Citrus Sinensis ID: 038273

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
Protein Sequence
FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRACM
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccEEccHHHHHccccccEEEcccccccEEccccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEccccEEEEcccccccccccccEEEccccccEEEcccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEccccEEcccccccccccccccEEEcccccccccccHHHHHHccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEccccccccccccHHHHccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcHccHHccccEEEEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccEccc
Coil and Loop (DISEMBL)
fqipfslepffnnsklkvfsgECNEIFVesesshsmtpkfqlesvklsgsgihatfpkflynqhdleyvdfsdsnlkgefpnwllenntnlntLVLRnnslsgpfrmpiqphwhldtlhvsknffqgnipleigvyfPRLVYLnlsrndfngsipssigdmnslkfldlshnqltgeipehlVIGCFNLEYLVLSenslhgqlfyKKIYLRKLARLHldanyctgeipkslsncspleglymsdnnlygnipawlgnlsSLNDIMMAINHlqgpiplefcqlnYLEIldlsennisgtlpscsshstiQQVHLsknmlygplkygtffnrssivtldlsynsfsgnipYWIERLTRLRYLILANnnlegevpnqlcrLKQLRLidlsnnnlfgqipgcldntslhnngdndgssaptrykgkplnkmygvdlscnkltgeippqigkltsiralnfshnnltgvipvsfsnlkqvESLDVSynnlngkippqlVELNVLAVFSVAHnnlsgkipewtAQFTtfkedsyegnpllcgkplpdcdvaavpeasneedgnslidmgsfyiTFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDnliptrfyracm
Flexible Loop (DISEMBL)
fqipfslepffnnsklkvFSGECNEIFVEsesshsmtpKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPeasneedgnsLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRACM
Low Complexity Region (SEG)
FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPnwllenntnlntlvlrnnslSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRACM
Disordered region (IsUnstruct)
********PFFNNSKLKVFSGECNEIFV****************VKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN**********************LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV**********SLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRA**
Disordered Region (DISOPRED)
FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN*******APTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK**************************SFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRAC*
Disordered Region (DISEMBL)
FQIPFSLEPFFNNSKLKVFSGECNEIFVE********PKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRACM
Disordered Region (DISPRO)
FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRACM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNLIPTRFYRACM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	623	2.2.26 [Sep-21-2011]
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.881	0.498	0.320	8e-58
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.812	0.404	0.299	1e-57
Q9FL28	1173	LRR receptor-like serine/	no	no	0.789	0.419	0.324	3e-57
Q9LJF3	1164	Receptor-like protein kin	no	no	0.914	0.489	0.295	3e-57
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.853	0.456	0.301	8e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.735	0.384	0.320	2e-55
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.836	0.431	0.304	7e-55
P93194	1109	Receptor-like protein kin	N/A	no	0.751	0.422	0.334	8e-55
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.850	0.439	0.303	1e-54
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.759	0.395	0.315	2e-54

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  225 bits (573), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 189/590 (32%), Positives = 287/590 (48%), Gaps = 41/590 (6%)

Query: 35  SMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL 94
           SM    QL  ++   +G     P  +     L+ +  +++ L+G  P  L E   NL  L
Sbjct: 182 SMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDL 240

Query: 95  VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSI 154
           +L  N LSG     +     L+ L + +N+F G+IP EIG    ++  L L  N   G I
Sbjct: 241 ILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIG-KLTKMKRLYLYTNQLTGEI 299

Query: 155 PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLA 214
           P  IG++     +D S NQLTG IP+       NL+ L L EN L G +  +   L  L 
Sbjct: 300 PREIGNLIDAAEIDFSENQLTGFIPKEFG-HILNLKLLHLFENILLGPIPRELGELTLLE 358

Query: 215 RLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP 274
           +L L  N   G IP+ L     L  L + DN L G IP  +G  S+ + + M+ N L GP
Sbjct: 359 KLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGP 418

Query: 275 IPLEFCQLNYLEILDLSENNISGTLP-SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSI 333
           IP  FC+   L +L L  N +SG +P    +  ++ ++ L  N L G L     FN  ++
Sbjct: 419 IPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNLQNL 477

Query: 334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG 393
             L+L  N  SGNI   + +L  L  L LANNN  GE+P ++  L ++   ++S+N L G
Sbjct: 478 TALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTG 537

Query: 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD---LSCNKLTGEIP-------- 442
            IP  L +       D  G+   + Y  + L ++  ++   LS N+LTGEIP        
Sbjct: 538 HIPKELGSCVTIQRLDLSGNKF-SGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTR 596

Query: 443 ----------------PQIGKLTSIR-ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
                            ++GKLTS++ +LN SHNNL+G IP S  NL+ +E L ++ N L
Sbjct: 597 LMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKL 656

Query: 486 NGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVA 545
           +G+IP  +  L  L + ++++NNL G +P+ TA F      ++ GN  LC      C   
Sbjct: 657 SGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNSQRSHCQ-P 714

Query: 546 AVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHW--RRR 593
            VP + ++   N LI+ GS      +   IVI ++  + ++   W  +RR
Sbjct: 715 LVPHSDSKL--NWLIN-GSQRQKILTITCIVIGSVFLITFLGLCWTIKRR 761

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 175/585 (29%), Positives = 274/585 (46%), Gaps = 79/585 (13%)

Query: 36  MTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLV 95
           +T    L+++ LS + +     +  +  + LE++  + + L G  P  +  NNT+L  L 
Sbjct: 284 LTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLF 343

Query: 96  LRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 155
           L    LSG     I     L  L +S N   G IP  +      L  L L+ N   G++ 
Sbjct: 344 LSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSL-FQLVELTNLYLNNNSLEGTLS 402

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHL-----------------------VIGCFNLEYL 192
           SSI ++ +L+   L HN L G++P+ +                       +  C  L+ +
Sbjct: 403 SSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEI 462

Query: 193 VLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP 252
               N L G++      L+ L RLHL  N   G IP SL NC  +  + ++DN L G+IP
Sbjct: 463 DWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIP 522

Query: 253 AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL-PSCSSHS----- 306
           +  G L++L   M+  N LQG +P     L  L  ++ S N  +G++ P C S S     
Sbjct: 523 SSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFD 582

Query: 307 ------------------TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
                              + ++ L KN   G +   TF   S +  LD+S NS SG IP
Sbjct: 583 VTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIP 641

Query: 349 YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPG----------- 397
             +    +L ++ L NN L G +P  L +L  L  + LS+N   G +P            
Sbjct: 642 VELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTL 701

Query: 398 CLDNTSLHN---------------NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIP 442
            LD  SL+                N + +  S P       L+K++ + LS N LTGEIP
Sbjct: 702 FLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIP 761

Query: 443 PQIGKLTSIR-ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAV 501
            +IG+L  ++ AL+ S+NN TG IP + S L ++ESLD+S+N L G++P Q+ ++  L  
Sbjct: 762 VEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGY 821

Query: 502 FSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAA 546
            ++++NNL GK+ +   QF+ ++ D++ GN  LCG PL  C+ A 
Sbjct: 822 LNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  223 bits (569), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 181/558 (32%), Positives = 258/558 (46%), Gaps = 66/558 (11%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWL--LENNTNLNTLVLRN 98
           QL+++++  + + ++ P  L+    L ++  S+++L G     +  LE+   L  L L +
Sbjct: 289 QLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHS 345

Query: 99  NSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI 158
           N+ +G F   I    +L  L V  N   G +P ++G+    L  L+   N   G IPSSI
Sbjct: 346 NNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL-LTNLRNLSAHDNLLTGPIPSSI 404

Query: 159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHL 218
            +   LK LDLSHNQ+TGEIP     G  NL ++ +  N                     
Sbjct: 405 SNCTGLKLLDLSHNQMTGEIPRGF--GRMNLTFISIGRN--------------------- 441

Query: 219 DANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLE 278
              + TGEIP  + NCS LE L ++DNNL G +   +G L  L  + ++ N L GPIP E
Sbjct: 442 ---HFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPRE 498

Query: 279 FCQLNYLEILDLSENNISGTLPSCSSHSTI-QQVHLSKNMLYGPLKYGTFFNRSSIVTLD 337
              L  L IL L  N  +G +P   S+ T+ Q + +  N L GP+     F+   +  LD
Sbjct: 499 IGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLD 557

Query: 338 LSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPG 397
           LS N FSG IP    +L  L YL L  N   G +P  L  L  L   D+S+N L G IPG
Sbjct: 558 LSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPG 617

Query: 398 ----CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRA 453
                L N  L+ N  N+  +     +   L  +  +DLS N  +G IP  +    ++  
Sbjct: 618 ELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFT 677

Query: 454 LNFSHNNLTG-------------------------VIPVSFSNLKQVESLDVSYNNLNGK 488
           L+FS NNL+G                          IP SF N+  + SLD+S NNL G+
Sbjct: 678 LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGE 737

Query: 489 IPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG--KPLPDCDVAA 546
           IP  L  L+ L    +A NNL G +PE +  F         GN  LCG  KPL  C +  
Sbjct: 738 IPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPLKPCTIKQ 796

Query: 547 VPEASNEEDGNSLIDMGS 564
                ++     LI +GS
Sbjct: 797 KSSHFSKRTRVILIILGS 814

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  223 bits (568), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 194/657 (29%), Positives = 312/657 (47%), Gaps = 87/657 (13%)

Query: 24  NEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQ--HDLEYVDFSDSNLKGEFP 81
           N++  + +SS S + K ++ +V LS +      P+       + L+++D S +N+ G+F 
Sbjct: 160 NKLAGKLKSSPSASNK-RITTVDLSNNRFSDEIPETFIADFPNSLKHLDLSGNNVTGDFS 218

Query: 82  NWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPL-EIGVYFPR 139
                   NL    L  NS+SG  F + +     L+TL++S+N   G IP  +    F  
Sbjct: 219 RLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRNSLIGKIPGDDYWGNFQN 278

Query: 140 LVYLNLSRNDFNGSIPSSIGDM-NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
           L  L+L+ N ++G IP  +  +  +L+ LDLS N LTG++P+     C +L+ L L  N 
Sbjct: 279 LRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSFT-SCGSLQSLNLGNNK 337

Query: 199 LHGQLFYKKI-YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN 257
           L G      +  L ++  L+L  N  +G +P SL+NCS L  L +S N   G +P+   +
Sbjct: 338 LSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCS 397

Query: 258 LSS---LNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS------------- 301
           L S   L  +++A N+L G +P+E  +   L+ +DLS N ++G +P              
Sbjct: 398 LQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVM 457

Query: 302 -------------CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
                        C     ++ + L+ N+L G L   +    ++++ + LS N  +G IP
Sbjct: 458 WANNLTGGIPESICVDGGNLETLILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIP 516

Query: 349 YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS----- 403
             I +L +L  L L NN+L G +P++L   K L  +DL++NNL G +PG L + +     
Sbjct: 517 VGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMP 576

Query: 404 ----------LHNNGDND--GSSAPTRYKGK--------------PLNKMYG-------- 429
                     + N G  D  G+     ++G               P  ++Y         
Sbjct: 577 GSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFS 636

Query: 430 -------VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSY 482
                  +DLS N ++G IP   G +  ++ LN  HN LTG IP SF  LK +  LD+S+
Sbjct: 637 SNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSH 696

Query: 483 NNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDC 542
           N+L G +P  L  L+ L+   V++NNL+G IP +  Q TTF    Y  N  LCG PLP C
Sbjct: 697 NDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPC 755

Query: 543 DVAAVPEASNEEDGNSLIDMG-SFYITFT-SSYVIVILAIIGVLYVNPHWRRRWFYL 597
              + P  S+       I  G S  I F+    V++I+A+     V    ++R  Y+
Sbjct: 756 SSGSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  222 bits (565), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 188/624 (30%), Positives = 293/624 (46%), Gaps = 92/624 (14%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLHVSKNF 124
           L+Y+D + +NL G+F +       NL    L  N+LSG  F + +     L+TL++S+N 
Sbjct: 203 LKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDKFPITLPNCKFLETLNISRNN 262

Query: 125 FQGNIP-LEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM-NSLKFLDLSHNQLTGEIPEHL 182
             G IP  E    F  L  L+L+ N  +G IP  +  +  +L  LDLS N  +GE+P   
Sbjct: 263 LAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQF 322

Query: 183 VIGCFNLEYLVLSENSLHGQLFYKKI-YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLY 241
              C  L+ L L  N L G      +  +  +  L++  N  +G +P SL+NCS L  L 
Sbjct: 323 T-ACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLD 381

Query: 242 MSDNNLYGNIPAWLGNLSS---LNDIMMAINHLQGPIPLEFCQLNYLEILDLS------- 291
           +S N   GN+P+   +L S   L  I++A N+L G +P+E  +   L+ +DLS       
Sbjct: 382 LSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGP 441

Query: 292 -----------------ENNISGTLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
                             NN++GT+P   C     ++ + L+ N+L G +   +    ++
Sbjct: 442 IPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTN 500

Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392
           ++ + LS N  +G IP  I  L++L  L L NN+L G VP QL   K L  +DL++NNL 
Sbjct: 501 MIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLT 560

Query: 393 GQIPGCLDNTS---------------LHNNGDND--GSSAPTRYKGK------------- 422
           G +PG L + +               + N G  D  G+     ++G              
Sbjct: 561 GDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHS 620

Query: 423 -PLNKMYG---------------VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP 466
            P  ++Y                 D+S N ++G IPP  G +  ++ LN  HN +TG IP
Sbjct: 621 CPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIP 680

Query: 467 VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKED 526
            SF  LK +  LD+S+NNL G +P  L  L+ L+   V++NNL+G IP +  Q TTF   
Sbjct: 681 DSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVS 739

Query: 527 SYEGNPLLCGKPLPDCD------VAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAI 580
            Y  N  LCG PL  C       + +   A  +    ++I   +F       +V++++A+
Sbjct: 740 RYANNSGLCGVPLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFM---CFVMLVMAL 796

Query: 581 IGVLYVNPHWRRRWFYLIENWMTS 604
             V  V    ++R  Y IE+  TS
Sbjct: 797 YRVRKVQKKEQKREKY-IESLPTS 819

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 174/543 (32%), Positives = 260/543 (47%), Gaps = 85/543 (15%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L  + LS + +  + PK     H+L  ++   + L G  P  L  N  +L +L+L  NS
Sbjct: 235 HLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPEL-GNCKSLKSLMLSFNS 293

Query: 101 LSGPFRMPIQ------------------PHWH-----LDTLHVSKNFFQGNIPLEIGVYF 137
           LSGP  + +                   P W      LD+L ++ N F G IP EI    
Sbjct: 294 LSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEI-EDC 352

Query: 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
           P L +L+L+ N  +GSIP  +    SL+ +DLS N L+G I E +  GC +L  L+L+ N
Sbjct: 353 PMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTI-EEVFDGCSSLGELLLTNN 411

Query: 198 SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL------------------------SN 233
            ++G +  + ++   L  L LD+N  TGEIPKSL                         N
Sbjct: 412 QINGSI-PEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGN 470

Query: 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
            + L+ L +SDN L G IP  +G L+SL+ + +  N  QG IP+E      L  LDL  N
Sbjct: 471 AASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSN 530

Query: 294 NISGTLP-SCSSHSTIQQVHLSKNMLYG--PLKYGTFFNRSSIVTL---------DLSYN 341
           N+ G +P   ++ + +Q + LS N L G  P K   +F++  +  L         DLSYN
Sbjct: 531 NLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYN 590

Query: 342 SFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN 401
             SG IP  +     L  + L+NN+L GE+P  L RL  L ++DLS N L G IP  + N
Sbjct: 591 RLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGN 650

Query: 402 TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNL 461
           +                       K+ G++L+ N+L G IP   G L S+  LN + N L
Sbjct: 651 SL----------------------KLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKL 688

Query: 462 TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFT 521
            G +P S  NLK++  +D+S+NNL+G++  +L  +  L    +  N  +G+IP      T
Sbjct: 689 DGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLT 748

Query: 522 TFK 524
             +
Sbjct: 749 QLE 751

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  215 bits (548), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 287/624 (45%), Gaps = 103/624 (16%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
           L  + LS +     FP F  +  +L+++D S +   G+  + L  +   L+ L L NN  
Sbjct: 236 LSYLDLSANNFSTVFPSF-KDCSNLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQF 293

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM 161
            G   +P  P   L  L++  N FQG  P ++      +V L+LS N+F+G +P S+G+ 
Sbjct: 294 VG--LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGEC 351

Query: 162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
           +SL+ +D+S+N  +G++P   ++   N++ +VLS N   G L      L KL  L + +N
Sbjct: 352 SSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSN 411

Query: 222 YCTG--------------------------EIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255
             TG                           IP SLSNCS L  L +S N L G+IP+ L
Sbjct: 412 NLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSL 471

Query: 256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK 315
           G+LS L D+++ +N L G IP E   L  LE L L  N+++G +P+  S+ T        
Sbjct: 472 GSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCT-------- 523

Query: 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL 375
                            +  + LS N  SG IP  + RL+ L  L L NN++ G +P +L
Sbjct: 524 ----------------KLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAEL 567

Query: 376 CRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNGDNDGSSA----- 415
              + L  +DL+ N L G IP  L   S               + N+G  +   A     
Sbjct: 568 GNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLE 627

Query: 416 ------------PTR--------YKG--KPL----NKMYGVDLSCNKLTGEIPPQIGKLT 449
                        TR        Y+G  +P       M  +DLS NKL G IP ++G + 
Sbjct: 628 FGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMY 687

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
            +  LN  HN+L+G+IP     LK V  LD+SYN  NG IP  L  L +L    +++NNL
Sbjct: 688 YLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNL 747

Query: 510 SGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITF 569
           SG IPE +A F TF +  +  N  LCG PLP    ++ P++   +   S     S   + 
Sbjct: 748 SGMIPE-SAPFDTFPDYRFANNS-LCGYPLP-LPCSSGPKSDANQHQKSHRRQASLAGSV 804

Query: 570 TSSYVIVILAIIGVLYVNPHWRRR 593
               +  +  I G++ V    ++R
Sbjct: 805 AMGLLFSLFCIFGLIIVAIETKKR 828

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  215 bits (547), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 255/526 (48%), Gaps = 58/526 (11%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L+ V LSG+G   + P  L N   LE++D S ++  G  P+  L    NL  L L  NS
Sbjct: 93  HLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPD-TLGALQNLRNLSLFFNS 151

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           L GPF   +    HL+T++ + N   G+IP  IG     L  L L  N F+G +PSS+G+
Sbjct: 152 LIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIG-NMSELTTLWLDDNQFSGPVPSSLGN 210

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
           + +L+ L L+ N L G +P  L     NL YL +  NSL G +    +  +++  + L  
Sbjct: 211 ITTLQELYLNDNNLVGTLPVTLN-NLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSN 269

Query: 221 NYCTGEIPKSLSNC------------------------SPLEGLYMSDNNLYGNIPAWLG 256
           N  TG +P  L NC                        + L+ LY++ N+  G IP  LG
Sbjct: 270 NQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELG 329

Query: 257 NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP-SCSSHSTIQQVHLSK 315
              S+ D+ +  N L+G IP E   L+ L+ L L  NN+SG +P S     ++Q + L +
Sbjct: 330 KCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQ 389

Query: 316 NMLYGPLK--------------YGTFFN---------RSSIVTLDLSYNSFSGNIPYWIE 352
           N L G L               Y   F           SS+  LDL+ N F+G+IP  + 
Sbjct: 390 NNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLC 449

Query: 353 RLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSL---HNNGD 409
              +L+ L+L  N LEG VP+ L     L  + L  NNL G +P  ++  +L     +G+
Sbjct: 450 SQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGN 509

Query: 410 N-DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS 468
           N  G   P+    K +  +Y   LS N+L+G IPP++G L  +  LN SHN L G++P  
Sbjct: 510 NFTGPIPPSLGNLKNVTAIY---LSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSE 566

Query: 469 FSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514
            SN  ++  LD S+N LNG IP  L  L  L   S+  N+ SG IP
Sbjct: 567 LSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 290/636 (45%), Gaps = 106/636 (16%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
           L  + LS +     FP F  +  +L+++D S +   G+  + L  +   L+ L L NN  
Sbjct: 236 LSYLDLSANNFSTVFPSF-KDCSNLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQF 293

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM 161
            G   +P  P   L  L++  N FQG  P ++      +V L+LS N+F+G +P S+G+ 
Sbjct: 294 VG--LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGEC 351

Query: 162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
           +SL+ +D+S+N  +G++P   +    N++ +VLS N   G L      L KL  L + +N
Sbjct: 352 SSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSN 411

Query: 222 YCTG--------------------------EIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255
             TG                           IP SLSNCS L  L +S N L G+IP+ L
Sbjct: 412 NLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSL 471

Query: 256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK 315
           G+LS L D+++ +N L G IP E   L  LE L L  N+++G +P+  S+ T        
Sbjct: 472 GSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCT-------- 523

Query: 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL 375
                            +  + LS N  SG IP  + RL+ L  L L NN++ G +P +L
Sbjct: 524 ----------------KLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAEL 567

Query: 376 CRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNGDNDGSSA----- 415
              + L  +DL+ N L G IP  L   S               + N+G  +   A     
Sbjct: 568 GNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLE 627

Query: 416 ------------PTR--------YKG--KPL----NKMYGVDLSCNKLTGEIPPQIGKLT 449
                        TR        Y+G  +P       M  +DLS NKL G IP ++G + 
Sbjct: 628 FGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMY 687

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
            +  LN  HN+L+G+IP     LK V  LD+SYN  NG IP  L  L +L    +++NNL
Sbjct: 688 YLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNL 747

Query: 510 SGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITF 569
           SG IPE +A F TF +  +  N  LCG PLP    ++ P++   +   S     S   + 
Sbjct: 748 SGMIPE-SAPFDTFPDYRFANNS-LCGYPLP-IPCSSGPKSDANQHQKSHRRQASLAGSV 804

Query: 570 TSSYVIVILAIIGVLYV---NPHWRRRWFYLIENWM 602
               +  +  I G++ V       RR+    +E +M
Sbjct: 805 AMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  214 bits (545), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 182/577 (31%), Positives = 267/577 (46%), Gaps = 104/577 (18%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
           LE + +S +      P FL +   L+++D S + L G+F +  +   T L  L + +N  
Sbjct: 224 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQF 281

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-- 159
            GP  +P  P   L  L +++N F G IP  +      L  L+LS N F G++P   G  
Sbjct: 282 VGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 339

Query: 160 -----------------------DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
                                   M  LK LDLS N+ +GE+PE L     +L  L LS 
Sbjct: 340 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 399

Query: 197 NSLHGQLFYKKIYLRK--LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW 254
           N+  G +        K  L  L+L  N  TG+IP +LSNCS L  L++S N L G IP+ 
Sbjct: 400 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 459

Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314
           LG+LS L D+ + +N L+G IP E   +  LE L L  N+++G +PS  S+ T       
Sbjct: 460 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------- 512

Query: 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ 374
                            ++  + LS N  +G IP WI RL  L  L L+NN+  G +P +
Sbjct: 513 -----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 555

Query: 375 LCRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNG---DNDGSSAP 416
           L   + L  +DL+ N   G IP  +   S               + N+G   +  G+   
Sbjct: 556 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 615

Query: 417 TRYKG------------KPLN---KMYG---------------VDLSCNKLTGEIPPQIG 446
             ++G             P N   ++YG               +D+S N L+G IP +IG
Sbjct: 616 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 675

Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
            +  +  LN  HN+++G IP    +L+ +  LD+S N L+G+IP  +  L +L    +++
Sbjct: 676 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 735

Query: 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
           NNLSG IPE   QF TF    +  NP LCG PLP CD
Sbjct: 736 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD 771

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
255581263	912	serine-threonine protein kinase, plant-t	0.951	0.650	0.511	1e-167
224142481	781	predicted protein [Populus trichocarpa]	0.953	0.760	0.487	1e-155
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.971	0.413	0.458	1e-140
224112245	876	predicted protein [Populus trichocarpa]	0.878	0.624	0.462	1e-140
224098008	1097	predicted protein [Populus trichocarpa]	0.963	0.546	0.460	1e-135
224073452	710	predicted protein [Populus trichocarpa]	0.971	0.852	0.430	1e-132
224114135	664	predicted protein [Populus trichocarpa]	0.953	0.894	0.428	1e-131
224073382	1309	predicted protein [Populus trichocarpa]	0.963	0.458	0.423	1e-130
224073436	1014	predicted protein [Populus trichocarpa]	0.971	0.596	0.423	1e-130
224142501	561	predicted protein [Populus trichocarpa]	0.833	0.925	0.489	1e-130

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 325/635 (51%), Positives = 422/635 (66%), Gaps = 42/635 (6%)

Query: 1   FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFL 60
           FQ+PFSL PFFN+S LK   G+ N I++E+E  HS  P+FQL S+  SG GI  TFP FL
Sbjct: 288 FQVPFSLGPFFNHSNLKHIRGQNNAIYLEAEL-HS-APRFQLISIIFSGYGICGTFPNFL 345

Query: 61  YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120
           Y+Q++L++VD S  +LKGEFPNWLL NNT L  L L NNSLSG  ++P+ PH +L  L +
Sbjct: 346 YHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDI 405

Query: 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE 180
           S N    +IPLEIG + P+L  LN+S N F+GSIPSS G+MNSL+ LDLS+NQL+G IPE
Sbjct: 406 SNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPE 465

Query: 181 HLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240
           HL  GCF+L  L+LS NSL GQ+F K+  L  L  L LD N+ +G IPKSLS  S L  +
Sbjct: 466 HLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIM 524

Query: 241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP 300
            +SDN+L G IP W+GNLS L +++++ N L+GPIP+EFCQL+YLE+LDL+ N++SG LP
Sbjct: 525 DLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILP 584

Query: 301 SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL 360
           SC S S+I  VHLS+NM+ GP     F     +VTLDLS N  +G IP  I  +  LR L
Sbjct: 585 SCLSPSSIIHVHLSQNMIEGPWT-NAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRIL 643

Query: 361 ILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPT--- 417
            L +N  +GE+P Q+C L QL LI L++NNL G IP CL         D   S AP    
Sbjct: 644 NLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCLQ-------LDQSDSLAPDVPP 696

Query: 418 ------------------------RYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRA 453
                                    Y+GK L+ + G+D SCNKLTGEIPP++G  ++I +
Sbjct: 697 VPNPLNPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYS 756

Query: 454 LNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKI 513
           LN S+N  TG IP +FSNLKQ+ESLD+SYNNLNG IP QL+EL  L+ FSVAHNNL GK 
Sbjct: 757 LNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKT 816

Query: 514 PEWTAQFTTFKEDSYEGNPLLCGKPLP----DCDVAAVPEASNEEDGNSLIDMGSFYITF 569
           P+ T QF TF+  SYEGNP LCG PLP    + + ++ P AS  ++ ++ +DM +FY +F
Sbjct: 817 PKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDEESNFLDMNTFYGSF 876

Query: 570 TSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTS 604
             SY  VI+ +  VLY+NP WRR WF  ++  ++S
Sbjct: 877 IVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 325/666 (48%), Positives = 422/666 (63%), Gaps = 72/666 (10%)

Query: 1   FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFL 60
           FQIP SL PFFN S LK  +G+ NEI+  +E  H++ P+FQL+ + L+  G   TFPKFL
Sbjct: 137 FQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLIPRFQLQRLSLACHGFGGTFPKFL 196

Query: 61  YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120
           Y QHDL++VD S   + GEFP+WLL+NNT L  L L N+SLSG  ++P   H +L  L +
Sbjct: 197 YYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDI 256

Query: 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE 180
           S+N  Q  IP +IG YFP L +LNLSRN F+GSIPSSI +M+SL  LDLS+N L+G IPE
Sbjct: 257 SRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPE 316

Query: 181 HLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240
            LV GC +L  LVLS N L GQ F++   L  L  L L  N  TG +P SLSN S LE L
Sbjct: 317 QLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEAL 376

Query: 241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP 300
            +S NNL G IP W+G +SSL                        + LDLSENN+ G+LP
Sbjct: 377 DVSLNNLSGKIPRWIGYMSSL------------------------QYLDLSENNLYGSLP 412

Query: 301 S--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
           S  CSS  T+ +V+LSKN L G L  G      S+  LDLS+N F G IP  I  L  L 
Sbjct: 413 SSFCSSR-TMTEVYLSKNKLEGSL-IGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELS 470

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD---------NTSLHNNGD 409
           +L+L  NNLEG++P+QLC+L++L LIDLS+N+LFG I  CL           TSL+ +G+
Sbjct: 471 FLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGN 530

Query: 410 NDG----------------------------SSAPTRYKGKPLNKMYGVDLSCNKLTGEI 441
           + G                             S    +KG  L  + G+DLSCN LTGEI
Sbjct: 531 SLGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEI 590

Query: 442 PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAV 501
           P ++G L++I+ LN SHN+LTG IP +FSNLK++ESLD+SYNNLNG+IP QL++LN L+ 
Sbjct: 591 PVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSA 650

Query: 502 FSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA------SNEED 555
           FSVAHNNLSGK PE  AQF+TF +  YEGNPLLCG PL      A+P +      +++++
Sbjct: 651 FSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKE 710

Query: 556 GNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNL-I 614
            N +IDM +F +TF+ +Y++V+L I  VLY+NP WRR WFY I   + +C+YF+VDNL +
Sbjct: 711 ENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPV 770

Query: 615 PTRFYR 620
           P RF R
Sbjct: 771 PARFRR 776

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/659 (45%), Positives = 400/659 (60%), Gaps = 54/659 (8%)

Query: 1    FQIPFSLEPFFNNSKLKVFSGEC--NEIFVESESSHSMTPKFQLESVKLSGSGIH-ATFP 57
            FQ    +  F  +SKL+V    C  N + +ESE   +  P FQL+  +LS   +   + P
Sbjct: 803  FQTFPPISSFAKHSKLEVLDLICGNNTLLLESED-QTWVPSFQLKVFRLSSCILKTGSIP 861

Query: 58   KFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDT 117
             FL+ QHDL  VD S+S+L+ +FP WL++NNT L  L L+NNSL+G F +P +P+     
Sbjct: 862  SFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSA 921

Query: 118  LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE 177
            + +S N  QG +P  I V  P L++LN+SRN F GSIP S G M  L FLDLS+N  TG 
Sbjct: 922  IDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGMRKLLFLDLSNNLFTGG 980

Query: 178  IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPL 237
            IPE L +GC +LEYL+LS+N LHGQ+F +   L  L  L LD N+ +G+IP  LSN S L
Sbjct: 981  IPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIP-DLSNSSGL 1039

Query: 238  EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG 297
            E LY+S N++ G +P W+GN+S+L  ++M  N L+GPIP+EFC L+ LE+LDLS NN+SG
Sbjct: 1040 ERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSG 1099

Query: 298  TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS-SIVTLDLSYNSFSGNIPYWIERLTR 356
            +LPSC S S +  VHL +N L GPL     F RS  + TLD+  N+ SG IP WI   + 
Sbjct: 1100 SLPSCFSPSLLIHVHLQENHLTGPLTKA--FTRSMDLATLDIRNNNLSGGIPDWISMFSG 1157

Query: 357  LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN--------- 407
            L  L+L  N+ +G++P QLC+L ++ ++DLS N+L G IP CL+                
Sbjct: 1158 LSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSII 1217

Query: 408  -------------------------------GDNDGSSAPTR-----YKGKPLNKMYGVD 431
                                            D   +   T+     YKG  L  M G+D
Sbjct: 1218 SYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGID 1277

Query: 432  LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
            LS NKLTG IPP+IG L+ + ALN SHN LTG IP +FS LK +ESLD+SYNNL G IP 
Sbjct: 1278 LSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPG 1337

Query: 492  QLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 551
            +L EL  LAVFSVA+NNLSGKIPE TAQF TF E+SY GNP LCG  L      A  EA 
Sbjct: 1338 ELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAE 1397

Query: 552  NEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYFIV 610
             EE    L D   FY++F +SYV+V+L +  VLY+N  WR++WF++I+  +T C  F++
Sbjct: 1398 IEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/619 (46%), Positives = 384/619 (62%), Gaps = 72/619 (11%)

Query: 1   FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHA-TFPKF 59
            +IP SL P +N SKLK F G  NEI+ E E  H+++PKFQL+S+ LS  G  A  FP+F
Sbjct: 305 LKIPMSLSPLYNLSKLKSFHGLDNEIYAE-EDDHNLSPKFQLQSLYLSNHGQGARAFPRF 363

Query: 60  LYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH 119
           LY+Q +L+ +D ++  +KG+FPNWL+ENNT L  L L N SLSGPF +P   H +L  L 
Sbjct: 364 LYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNLSILS 423

Query: 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIP 179
           +S N+ QG IP EIG + PRL  L++S N FNGSIPSS+ +M+ L+ LDLS+N LTG IP
Sbjct: 424 ISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLTGRIP 483

Query: 180 EHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEG 239
           +HL        +L+LS NSL                         G IP S+SNCS L+ 
Sbjct: 484 KHLTTSLCLFNFLILSNNSLQ------------------------GAIPDSMSNCSSLQL 519

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
           L +S+NNL   IP W+ ++S                        +L+ LDLS NN SG L
Sbjct: 520 LDVSNNNLSPRIPGWIWSMS------------------------FLDFLDLSRNNFSGPL 555

Query: 300 -PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
            P+ S+ ST++ V+LS+N L G L    F+N S+++TLDLS+N+  G IP WI  L++LR
Sbjct: 556 PPTISTSSTLRYVYLSRNKLQG-LITKAFYNFSTLLTLDLSHNNLIGTIPEWIGSLSKLR 614

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN-NGDNDGSSAPT 417
           YL+L+ N LEGE+P QLC+L  L LIDLS+N+L G I  C+  TSL   +   D +   T
Sbjct: 615 YLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCM--TSLAPFSALTDATIVET 672

Query: 418 R--------------YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTG 463
                          Y+G  +    G+D SCN  TG+IPP+I  L+ I+ALN SHN+L G
Sbjct: 673 SQQYLEFTTKNVSLIYRGSIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIG 732

Query: 464 VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTF 523
            IP +FS LK++ESLD+S+N L+G+IPPQL EL  L +FSVAHNNLSGK P   AQF TF
Sbjct: 733 PIPPTFSRLKEIESLDLSHNKLDGEIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATF 792

Query: 524 KEDSYEGNPLLCGKPLPD-CDVAAVPEAS--NEEDGNSLIDMGSFYITFTSSYVIVILAI 580
           +E  Y+ NP LCG+PLP  C  + +P  +  N ED    IDM  FY++F  +Y++V++ I
Sbjct: 793 EESCYKDNPFLCGEPLPKICGASMLPSPTSMNNEDNGGFIDMEVFYVSFGIAYIMVLVVI 852

Query: 581 IGVLYVNPHWRRRWFYLIE 599
           + VLY+NP+WRR WF+  E
Sbjct: 853 VAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/626 (46%), Positives = 384/626 (61%), Gaps = 26/626 (4%)

Query: 1    FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGS----GIHATF 56
            F++P S++PF N+S LK FS E N +  ES +  ++ PKFQL   +LS S     ++   
Sbjct: 471  FEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLIPKFQLVFFRLSSSPTSEALNVEI 530

Query: 57   PKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD 116
              FLY Q+DL  +D S +N+ G FP+WLL+NNT +  L L  NS  G  ++   P+ ++ 
Sbjct: 531  LDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMT 590

Query: 117  TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG 176
             L +S N   G IP +I + FP L  L ++ N F G IPS +G+ +SL FLDLS+NQL+ 
Sbjct: 591  ELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLST 650

Query: 177  EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP 236
               E L      ++ L LS NSL GQ+            L+L  NY  G+I        P
Sbjct: 651  VKLEQLT----TIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDF-----P 701

Query: 237  LEG------LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL 290
            L G      L +S+N   G +P    N +    + ++ N  +GPIP +FC+L+ LE LDL
Sbjct: 702  LYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDL 761

Query: 291  SENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 350
            S+N +SG +PSC +   I  +HLSKN L GPL YG F+N SS+VT+DL  NSF G+IP W
Sbjct: 762  SDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNW 820

Query: 351  IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 410
            I  L+ L  L+L  NN +GE+  QLC L+QL ++D+S N L G +P CL N +L    +N
Sbjct: 821  IGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPEN 880

Query: 411  -DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSF 469
              GS       GK L+ MYG+DLS N   G IPP+ G L+ I +LN SHNNLTG IP +F
Sbjct: 881  ARGSRIWFSVMGKVLSYMYGIDLSNNNFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATF 940

Query: 470  SNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTF-KEDSY 528
            SNLKQ+ESLD+SYNNLNG IPPQL E+  L VFSVA+NNLSG+ PE   QF TF  E+ Y
Sbjct: 941  SNLKQIESLDLSYNNLNGAIPPQLTEITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCY 1000

Query: 529  EGNPLLCGKPLP-DCDVAAVP--EASNEEDG-NSLIDMGSFYITFTSSYVIVILAIIGVL 584
            EGNP LCG PL  +C   AVP     N+E G +  IDM  FYI+F   Y +V++ I  VL
Sbjct: 1001 EGNPFLCGPPLRNNCSEEAVPLQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVL 1060

Query: 585  YVNPHWRRRWFYLIENWMTSCFYFIV 610
            Y+NP+WRRRW Y IE+ + +C+YF+V
Sbjct: 1061 YINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 287/666 (43%), Positives = 385/666 (57%), Gaps = 61/666 (9%)

Query: 1   FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATF---P 57
           F++P S++PF N+S LK FS E N++  E  +  ++ PKFQL   +LS S         P
Sbjct: 39  FEVPISIKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSSSPTSEALNVIP 98

Query: 58  KFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDT 117
            FLY Q DL  +D S +N+ G FP+WLL+NNT L  L L +NS  G  ++    H ++  
Sbjct: 99  DFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTN 158

Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE 177
           L +S N   G IP +I + FP L  L +++N F G IPS +G+++SL FLDLS+NQL+  
Sbjct: 159 LDISNNNMNGQIPKDICLIFPNLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTV 218

Query: 178 IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK-SLSNCSP 236
             E L      +  L LS N+L G++        +L  L+L+ N   G+I    L   + 
Sbjct: 219 KLEQLT----TIWVLKLSNNNLGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNV 274

Query: 237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
              L +S+N   G +P    N S L  I ++ NH +GPIP +FC+ + LE LDLSENN+S
Sbjct: 275 WNVLDLSNNQFSGMLPRSFVNFSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLS 334

Query: 297 GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR 356
           G +PSC S   I  VHLSKN L GPL Y  FFN S +VT+DL  NSF+G+IP WI  L+ 
Sbjct: 335 GYIPSCFSPPQITHVHLSKNRLSGPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSS 393

Query: 357 LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN---------- 406
           L  L+L  N+ +GE+P QLC L+QL ++D+S+N L G +P CL N +             
Sbjct: 394 LSVLLLRANHFDGELPIQLCLLEQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVA 453

Query: 407 ---------------------------------NGDNDGSSAPTR--YKG---KPLNKMY 428
                                            N   + +   T+  Y G   K LN M+
Sbjct: 454 YGFISESIEKAYYEIMGPPLVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMF 513

Query: 429 GVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK 488
           G+DLS N   G IPP+ G L+ I ++N SHNNLTG IP +FSNL  +ESLD+SYNNLNG 
Sbjct: 514 GIDLSNNNFIGAIPPEFGNLSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGA 573

Query: 489 IPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAV 547
           IPPQ  E+  L VFSVAHNNLSGK PE   QF TF E  YEGNP LCG PLP +C   AV
Sbjct: 574 IPPQFTEVTTLEVFSVAHNNLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAV 633

Query: 548 ---PEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTS 604
              P  ++E+  +  IDM  FYI+F   Y +V++ I  VLY+NP+WRRRW Y IE+ + +
Sbjct: 634 VSQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDT 693

Query: 605 CFYFIV 610
           C+YF+V
Sbjct: 694 CYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114135|ref|XP_002332433.1| predicted protein [Populus trichocarpa] gi|222832402|gb|EEE70879.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/663 (42%), Positives = 383/663 (57%), Gaps = 69/663 (10%)

Query: 7   LEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGS--GIHATFPKFLYNQH 64
           ++PF N+S LK FS E N++  E  +  ++ PKFQL   +LS +   ++   P FLY Q+
Sbjct: 1   MKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSKTTKALNVEIPDFLYYQY 60

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
           DL  +D S +N+ G FP+WLL+NNT L  L L  NS  G  ++   P+ ++  L +S N 
Sbjct: 61  DLRVLDLSHNNITGMFPSWLLKNNTRLEELWLSENSFVGALQLQDHPYSNMIELDISNNN 120

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
             G IP +I + FP L  L +++N F G IPS +G+++S   LDLS+NQL+    E L  
Sbjct: 121 MNGQIPKDICLIFPNLWSLKMAKNGFTGGIPSCLGNISSFSVLDLSNNQLSIVKLEQLTA 180

Query: 185 GCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEG----- 239
               + +L LS N+L GQ+         L  L L  N   G+I        PL G     
Sbjct: 181 ----IMFLNLSNNNLGGQIPTSVFNSSSLDVLFLSGNNFWGQISD-----FPLNGWKEWV 231

Query: 240 -LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
            L +S+N   G +P W  N + L  I ++ NH +GPIP +FC+L+ L  LDLS+NN+SG 
Sbjct: 232 VLDLSNNQFSGKVPRWFVNSTFLRSIDLSKNHFKGPIPGDFCKLDQLLYLDLSKNNLSGY 291

Query: 299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
           +PSC S  T+  VHLS+N L GPL +G F+N SS+VT+DL  NSF+G+IP WI  L+ L 
Sbjct: 292 IPSCFSPRTLIHVHLSENRLSGPLTHG-FYNSSSLVTMDLRDNSFTGSIPNWIGNLSSLS 350

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN-------- 410
            L+L  N+ +GE+P QLC L++L ++D+S N LFG +P CL N +   +           
Sbjct: 351 VLLLKANHFDGELPVQLCLLEKLNILDVSQNQLFGPLPSCLGNLTFKESSQKAFVYLRYV 410

Query: 411 --DGSSAPTRYK--GKP-----------------------------------LNKMYGVD 431
               S     Y+  G P                                   LN MYG+D
Sbjct: 411 FLTKSIKEAYYETMGPPLVDSMYNLEKGFQLNFTEVIEFTTKNMYYSYMGKILNYMYGID 470

Query: 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
           LS N   G IPP+ G L++I +LN SHNNLTG IP +FSNLK +ESLD+SYNNLNG IPP
Sbjct: 471 LSNNNFVGAIPPEFGNLSAILSLNLSHNNLTGSIPATFSNLKHIESLDLSYNNLNGAIPP 530

Query: 492 QLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVP-- 548
           QL E+  L VFSVAHNNLSGK PE   QF TF    Y+GNP LCG PL  +C   AVP  
Sbjct: 531 QLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDASCYKGNPFLCGTPLQNNCSEEAVPLQ 590

Query: 549 EASNEEDG-NSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFY 607
              N+E G +  IDM  FYI+F   Y +V++ I  VLY+NP+WRRRW Y IE+ + +C+Y
Sbjct: 591 PVHNDEQGDDGFIDMEFFYISFGVCYTVVVMTIATVLYINPYWRRRWLYFIEDCIDTCYY 650

Query: 608 FIV 610
           F+V
Sbjct: 651 FVV 653

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 286/676 (42%), Positives = 389/676 (57%), Gaps = 76/676 (11%)

Query: 1    FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGS--GIHATFPK 58
            F++P S++PF N+S LK F  E N + +E  +   + PKFQL    LS +   ++   P 
Sbjct: 633  FEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPKFQLVFFSLSKTTEALNVEIPN 692

Query: 59   FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 118
            FLY Q+ L ++D S +N+ G FP+WLL+NNT L  L L  NS+ G  ++   P+  +  L
Sbjct: 693  FLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMTEL 752

Query: 119  HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEI 178
             +S N   G IP +I + FP L  L +++N F G IPS +G+M+SL  LDLS+NQL+   
Sbjct: 753  DISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLSTVK 812

Query: 179  PEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLE 238
             E L      + +L LS N+L GQ+            L+L  N   G+I       SPL 
Sbjct: 813  LELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISD-----SPLN 863

Query: 239  G------LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLE-FCQLNYLEILDLS 291
            G      L +S+N   G +P W  N ++L  I ++ NH +GPI    FC+L+ LE LDLS
Sbjct: 864  GWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLS 923

Query: 292  ENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI 351
            ENN+ G +PSC +   I  VHLSKN L GPLKY  F+N SS+VT+DL  NSF+G+IP W+
Sbjct: 924  ENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSIPNWV 982

Query: 352  ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN---- 407
              L+ L  L+L  N+L+GE+P QLC L+QL ++D+S N L G +P CL+N +   +    
Sbjct: 983  GNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQKA 1042

Query: 408  ---------------------GDNDGSSAPTRYKG-----------------------KP 423
                                 G    +S  T  KG                       K 
Sbjct: 1043 LMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGKI 1102

Query: 424  LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
            L+ M G+DLS N   G IPP+ G L+ I +LN SHNNLTG IP +FSNLK++ESLD+SYN
Sbjct: 1103 LSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSYN 1162

Query: 484  NLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DC 542
            N NG IPPQL E+  L VFSVAHNNLSGK PE   QF TF E  YEGNP LCG PL  +C
Sbjct: 1163 NFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNC 1222

Query: 543  D--------VAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRW 594
                     V + P  ++E++ +  IDM  FYI+F+  Y +V++ I  VLY+NP+WRRRW
Sbjct: 1223 SEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRRW 1282

Query: 595  FYLIENWMTSCFYFIV 610
             Y IE+ + +C+YF+V
Sbjct: 1283 LYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 286/675 (42%), Positives = 387/675 (57%), Gaps = 70/675 (10%)

Query: 1    FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGS--GIHATFPK 58
            F++P S++PF N+S LK FS E N++  E  +  ++ PKFQL   +LS +   ++   P 
Sbjct: 334  FEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPD 393

Query: 59   FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 118
            FLY Q+D+  +D S +N+   FP+WLL+NNT L  L L NNS  G  ++   P+ ++  L
Sbjct: 394  FLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTEL 453

Query: 119  HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEI 178
             +S N   G IP +I + FP +  L ++ N F G IPS +G+++SLK LDLS+NQL+   
Sbjct: 454  DISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVK 513

Query: 179  PEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKS-LSNCSPL 237
             E L      + +L LS N+L GQL         L  L+L  N   G+I    L      
Sbjct: 514  LEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMW 569

Query: 238  EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG 297
              L +SDN   G +P WL N + L  I ++ N+ +GPI  +FC+LN LE LDLSENN+SG
Sbjct: 570  STLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSG 629

Query: 298  TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRL 357
             +PSC S   I  VHLS+N L GPL YG F+N SS+VT+DL  N+F+G+ P WI  L+ L
Sbjct: 630  YIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSL 688

Query: 358  RYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDND----GS 413
              L+L  N+ +GE+P QLC L+QL ++D+S N L G +P CL N +   +        G+
Sbjct: 689  SVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGA 748

Query: 414  SAPTR--------------------------------------------YKGKPLNKMYG 429
               +R                                            YKGK L+ M G
Sbjct: 749  DVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSG 808

Query: 430  VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
            +DLS N   G IPP+ G L+ I +LN SHNNLTG IP +FSNLKQ+ESLD+SYNNLNG I
Sbjct: 809  IDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVI 868

Query: 490  PPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVP 548
            PPQL ++  L VFSVAHNNLSG  PE   QF TF E  YEGNP LCG PL  +C   AVP
Sbjct: 869  PPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVP 928

Query: 549  EAS-------------NEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWF 595
                            +E+  +  IDM  FYI F   Y +V++ I+ VLY++P+WRRRW 
Sbjct: 929  SQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWS 988

Query: 596  YLIENWMTSCFYFIV 610
            Y IE+ + +C+YF+V
Sbjct: 989  YFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142501|ref|XP_002324595.1| predicted protein [Populus trichocarpa] gi|222866029|gb|EEF03160.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 285/582 (48%), Positives = 366/582 (62%), Gaps = 63/582 (10%)

Query: 76  LKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV 135
           + GEFP+WLL+NNT L  L L NNSLSG F++       L  L +S+N  Q  IP+EIG 
Sbjct: 1   MTGEFPSWLLQNNTKLEKLYLVNNSLSGSFQLANHSLVRLSHLDISRNHIQNQIPIEIGA 60

Query: 136 YFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195
            FPRLV+LNLS+N+F+GSIPSSI +M+ L+ LDLS+N L+G IPE LV  C +L  L+LS
Sbjct: 61  CFPRLVFLNLSKNNFSGSIPSSISNMSLLEVLDLSNNGLSGNIPEQLVENCLSLGVLMLS 120

Query: 196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255
            N L GQLF+K   L  L  L L  N  TG +P SLSNCS L+ L +S NNL G IP W+
Sbjct: 121 NNYLKGQLFWKNFNLTYLTELILRGNQLTGILPNSLSNCSALQALDVSLNNLSGKIPRWI 180

Query: 256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHSTIQQVHL 313
           G +SS                        L+ LDLSENN+ G+LPS  CSS   I +V+L
Sbjct: 181 GYMSS------------------------LQYLDLSENNLFGSLPSNFCSSRMMI-EVYL 215

Query: 314 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373
           SKN L G L  G      S+  LDLS+N F G IP  I     L  L+L  NNLE E+P 
Sbjct: 216 SKNKLEGSL-IGALDGCLSLKRLDLSHNYFKGGIPESIGSSLELSVLLLGYNNLEAEIPR 274

Query: 374 QLCRLKQLRLIDLSNNNLFGQIPGC----------------------------LDNTSLH 405
           QLC LK+LRLIDLS+NNL G I  C                            L++ S++
Sbjct: 275 QLCELKKLRLIDLSHNNLCGHILPCLQPRSEWYREWDSAPGPSTMLLASAPMPLEDPSVN 334

Query: 406 NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI 465
            + +    S    +KG  LN + G+DLSCN LTGEIP ++G L +I  LN SHN+LTG I
Sbjct: 335 KSVEITIKSISYSFKGIILNLISGIDLSCNNLTGEIPFELGNLNNIELLNLSHNSLTGPI 394

Query: 466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKE 525
           P +FSNLK++E+LD+SYNNLNG+IPPQL+ LN L+ FSVAHNNLSGK PE  AQF+TF +
Sbjct: 395 PPTFSNLKKIETLDLSYNNLNGEIPPQLLNLNSLSAFSVAHNNLSGKTPEMVAQFSTFNK 454

Query: 526 DSYEGNPLLCGKPLPDCDVAAVPEA------SNEEDGNSLIDMGSFYITFTSSYVIVILA 579
             YEGNPLLCG PL      A+P +      +++++ N +IDM +FY+TF+ +Y++V+LA
Sbjct: 455 SCYEGNPLLCGPPLAKNCTGAIPPSPLPRSQTHKKEENGVIDMEAFYVTFSVAYIMVLLA 514

Query: 580 IIGVLYVNPHWRRRWFYLIENWMTSCFYFIVDNL-IPTRFYR 620
           I  VLY+NP WR+ WFY I   + +C+YF+VDNL +P RF R
Sbjct: 515 IGAVLYINPQWRQAWFYFIGQSINNCYYFLVDNLPVPARFRR 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.629	0.401	0.361	2.4e-91
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.638	0.446	0.342	2.6e-90
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.799	0.516	0.351	4.4e-68
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.884	0.551	0.332	4.1e-67
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.804	0.462	0.323	2.2e-63
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.935	0.642	0.319	3.8e-60
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.890	0.593	0.322	1.2e-57
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.760	0.427	0.332	5.6e-56
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.735	0.403	0.334	6e-56
TAIR|locus:2020457	1166	BRL1 "BRI1 like" [Arabidopsis	0.634	0.338	0.331	3.2e-35

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 2.4e-91, Sum P(2) = 2.4e-91
 Identities = 145/401 (36%), Positives = 204/401 (50%)

Query:     5 FSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQH 64
             FSL P  N +KLKVF        ++ E+  +  PKFQL    L    +    P FL  Q 
Sbjct:   324 FSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSL-GKIPNFLVYQT 382

Query:    65 DLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLHVSKNF 124
             +L  VD S + L G+ P                    +  F++P   H  L  L  S N 
Sbjct:   383 NLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVH-KLQVLDFSAND 440

Query:   125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
               G +P  IG   PRL+++N S N F G++PSS+G+MN + FLDLS+N  +GE+P  L+ 
Sbjct:   441 ITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLT 500

Query:   185 GCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244
             GCF+L  L LS NS  G +   +  L  L  L +  N  TGEI   L     L     S+
Sbjct:   501 GCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASN 560

Query:   245 NNLYGNIPAWLGNLSS-LNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303
             N L G I + +   SS L  ++++ N L+G +P     +++L  LDLS N +SG LPS  
Sbjct:   561 NRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSV 620

Query:   304 SHSTIQ-QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLIL 362
              +S    ++ L  N   GPL   T    + I  LDL  N  SG+IP ++    ++  L+L
Sbjct:   621 VNSMYGIKIFLHNNSFTGPLPV-TLLENAYI--LDLRNNKLSGSIPQFVNT-GKMITLLL 676

Query:   363 ANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS 403
               NNL G +P +LC L  +RL+DLS+N L G IP CL++ S
Sbjct:   677 RGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLS 717

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 2.6e-90, Sum P(2) = 2.6e-90
 Identities = 144/421 (34%), Positives = 218/421 (51%)

Query:     1 FQIPFSLEPFFNNSKLKVF--SGECNEI-FVESESSHSMTPKFQLESVKLSGSGIHATFP 57
             F+  FSL      ++LKVF  S     +  VE+  S  +  + QL S+ LS   +    P
Sbjct:   238 FEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGL--QSQLSSIMLSHCNL-GKIP 294

Query:    58 KFLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDT 117
              FL+ Q +L  +D S++ L G FP                         +P +    L  
Sbjct:   295 GFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-RTMRRLQI 352

Query:   118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE 177
             L +S N F   +P ++G+    L +LNLS N+F G++PSS+  M +++F+DLS+N  +G+
Sbjct:   353 LDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGK 412

Query:   178 IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPL 237
             +P +L  GC++L +L LS N   G +  K      L  L +D N  TG+IP++L N   L
Sbjct:   413 LPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRML 472

Query:   238 EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG 297
               + +S+N L G IP WLGN   L  + ++ N LQG IP     + YL +LDLS N +SG
Sbjct:   473 SVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSG 531

Query:   298 TLP--SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT 355
             +LP  S S +  I  +H   N L G +    ++    +  LDL  N  SGNIP +  R T
Sbjct:   532 SLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG---LRLLDLRNNKLSGNIPLF--RST 584

Query:   356 -RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSL----HNNGDN 410
               +  ++L  NNL G++P +LC L  +R++D ++N L   IP C+ N S     H+N D+
Sbjct:   585 PSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADS 644

Query:   411 D 411
             D
Sbjct:   645 D 645

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 188/535 (35%), Positives = 276/535 (51%)

Query:     1 FQIPFSLEPFFNNSKLKVFS--GECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPK 58
             F+  FS     N S L V     + + + V SESS    PKFQL  + L    +    P 
Sbjct:   304 FEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWK--PKFQLSVIALRSCNMEKV-PH 360

Query:    59 FLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTL 118
             FL +Q DL +VD SD+N+ G+ P                    +  F++P   H +L  L
Sbjct:   361 FLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIPKSAH-NLLFL 418

Query:   119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEI 178
              VS N F    P  IG  FP L YLN S+N+F  ++PSS+G+MN ++++DLS N   G +
Sbjct:   419 DVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNL 478

Query:   179 PEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLE 238
             P   V GC+++  L LS N L G++F +      +  L +D N  TG+I + L +   LE
Sbjct:   479 PRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLE 538

Query:   239 GLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
              L MS+NNL G IP+W+G L SL  ++++ N L+G IP+     + L++LDLS N++SG 
Sbjct:   539 LLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGV 598

Query:   299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
             +P          + L  N L G +   T    +++  LDL  N FSG IP +I  +  + 
Sbjct:   599 IPPQHDSRNGVVLLLQDNKLSGTIP-DTLL--ANVEILDLRNNRFSGKIPEFIN-IQNIS 654

Query:   359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLH-----NNGDND-G 412
              L+L  NN  G++P+QLC L  ++L+DLSNN L G IP CL NTS        + D D G
Sbjct:   655 ILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFG 714

Query:   413 SSAPTR-YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS- 470
              S P+  + G  L++    D S NK  G I      L ++  L+  +   T    + F+ 
Sbjct:   715 ISFPSDVFNGFSLHQ----DFSSNK-NGGI--YFKSLLTLDPLSMDYKAATQT-KIEFAT 766

Query:   471 ----------NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
                       NLK +  +D+S N L+G+IP +   L  L   +++HNNLSG IP+
Sbjct:   767 KHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPK 821

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 4.1e-67, P = 4.1e-67
 Identities = 192/578 (33%), Positives = 285/578 (49%)

Query:     5 FSLEPFFNNSKLKVF--SGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYN 62
             FSL    N SKLKV     + N + VE E+S    PKFQL  + L    +    P FL +
Sbjct:   322 FSLGLLANLSKLKVLRLDSQSNSLEVEFETSWK--PKFQLVVIALRSCNLEKV-PHFLLH 378

Query:    63 QHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLHVSK 122
             Q DL +VD SD+ + G FP                    +  F++P   H +L  L+VS 
Sbjct:   379 QKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH-NLLFLNVSV 436

Query:   123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL 182
             N F        G   P LV +NL+ N F G++PSS+ +M S++FLDLSHN+  G++P   
Sbjct:   437 NKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRF 496

Query:   183 VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYM 242
             + GC+NL  L LS N L G++F +     +L  + +D N  TG I K   +   L  L +
Sbjct:   497 LKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDI 556

Query:   243 SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS- 301
             S+N L G IP+W+G    L  + ++ N L+G IP     ++YL++LDLS N +SG +P  
Sbjct:   557 SNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPH 616

Query:   302 CSS--HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRY 359
              SS  H  +  + L  N L G +      N   ++ LDL  N  SGN+P +I     +  
Sbjct:   617 VSSIYHGAV--LLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEFINT-QNISI 670

Query:   360 LILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS--LHNNGDNDGSSAPT 417
             L+L  NN  G++P+Q C L  ++L+DLSNN   G IP CL NTS  L    D+     P+
Sbjct:   671 LLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPS 730

Query:   418 RYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVES 477
             R+ G   + +Y   L    +  E    + +  S   + F+  +          NLK +  
Sbjct:   731 RF-GTAKDPVYFESLL---MIDEFN-MVNETNSQTKIEFATKHRYDAY--MGGNLKLLFG 783

Query:   478 LDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537
             +D+S N L+G+IP +L  L  L   +++HNNLSG I E  +     +      N L    
Sbjct:   784 MDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPI 843

Query:   538 PLPDCDVAAVPEASNEEDGNS-LIDMGSFYITF-TSSY 573
             PL   D+ ++   +   +  S ++  G  + TF T SY
Sbjct:   844 PLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSY 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 2.2e-63, P = 2.2e-63
 Identities = 169/523 (32%), Positives = 269/523 (51%)

Query:     1 FQIPFSLEPFFNNSKLKVF--SGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPK 58
             F   F      N ++L VF  S +   I V++ESS +  P FQL+ + LS   + +T   
Sbjct:   418 FDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWA--PLFQLKMLYLSNCSLGSTMLG 475

Query:    59 FLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTL 118
             FL +Q DL +VD S + L G FP                    +   ++PI  H  L  L
Sbjct:   476 FLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVL 533

Query:   119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEI 178
              +S N    +I  +IG+ FP L ++N S N F G+IPSSIG+M SL+ LD+S N L G++
Sbjct:   534 DISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQL 593

Query:   179 PEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLE 238
             P   + GC++L  L LS N L G++F K   L  L  L LD N  TG + + L     L 
Sbjct:   594 PIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLT 653

Query:   239 GLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
              L +SDN   G +P W+G +S L+ + M+ N L+GP P    Q  ++E++D+S N+ SG+
Sbjct:   654 LLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGS 712

Query:   299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
             +P   +  +++++ L  N   G L  G  F  + +  LDL  N+FSG I   I++ ++LR
Sbjct:   713 IPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLR 771

Query:   359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTR 418
              L+L NN+ +  +P ++C+L ++ L+DLS+N   G IP C    S     ++   S    
Sbjct:   772 ILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVAD 831

Query:   419 YKGKPLNKM----YGVDLSCNK-LTGEIPPQIGKLTSIRALNFS-HNNLTGVIPVSFSNL 472
             +    +  +    YG  L+ +  +     P+    T +  L  S +    G I      L
Sbjct:   832 FDFSYITFLPHCQYGSHLNLDDGVRNGYQPK--PATVVDFLTKSRYEAYQGDI------L 883

Query:   473 KQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
             + +  LD+S N L+G+IP ++ +L  +   +++ N L+G IP+
Sbjct:   884 RYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPD 926

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 3.8e-60, P = 3.8e-60
 Identities = 203/636 (31%), Positives = 298/636 (46%)

Query:     5 FSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQH 64
             FSL P  N +KLKVF     +  V+ +   +  P FQL  + L    +    P FL  Q 
Sbjct:   284 FSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEK-IPNFLMYQK 342

Query:    65 DLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXXS-GPFRMPIQPHWHLD------- 116
             +L  VD S + + G  P                    +       +     LD       
Sbjct:   343 NLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIG 402

Query:   117 -------------TLHV--SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGD 160
                           +H+  S N FQGN P  +G  +  + +L+LS N+ +G +P S +  
Sbjct:   403 GLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMY-NISFLDLSYNNLSGELPQSFVSS 461

Query:   161 MNSLKFLDLSHNQLTGE-IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLD 219
               SL  L LSHN+ +G  +P        +L  L ++ N   G++    + L  L  L + 
Sbjct:   462 CFSLSILQLSHNKFSGHFLPRQT--NFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMS 519

Query:   220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
              N+  GE+P  L     L  L +S N L G +P+   ++S  N + +  N+  GPIP  F
Sbjct:   520 NNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPS---HVSLDNVLFLHNNNFTGPIPDTF 576

Query:   280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 339
               L  ++ILDL  N +SG +P       I  + L  N L G +   T    S +  LDLS
Sbjct:   577 --LGSIQILDLRNNKLSGNIPQFVDTQDISFLLLRGNSLTGYIP-STLCEFSKMRLLDLS 633

Query:   340 YNSFSGNIPYWIERLT--RLRYLILANNNLEGEVPN-QLCRLKQLRLID---LSNNNLFG 393
              N  +G IP     L+    R   + N  +   + +  L   K   +++   L  +N F 
Sbjct:   634 DNKLNGFIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYF- 692

Query:   394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRA 453
             +I     +         D      ++    LN MYG+DLS N+L+G IP ++G L  +RA
Sbjct:   693 EI-----DVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRA 747

Query:   454 LNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKI 513
             LN SHN L+  IP SFS L+ +ESLD+SYN L G IP QL  L  LA+F+V++NNLSG I
Sbjct:   748 LNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGII 807

Query:   514 PEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVPEAS---NEEDGNSL-IDMGSFYIT 568
             P+   QF TF E+SY GNPLLCG P    C+     E +    EED   + IDM  FY +
Sbjct:   808 PQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWS 866

Query:   569 FTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTS 604
                +YV  ++ I+ ++ V+  WRR W  L++ ++ S
Sbjct:   867 TAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 1.2e-57, P = 1.2e-57
 Identities = 187/580 (32%), Positives = 271/580 (46%)

Query:    36 MTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXX 95
             +T   +LE ++L  +     FP      H+L+  DFS +N+ G+FP              
Sbjct:   364 LTNNPELEVLQLQNNSF-TIFP-IPTMVHNLQIFDFSANNI-GKFPDKMDHALPNLVRLN 420

Query:    96 XXXXXXSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 155
                    G F   I    ++  L +S N F G +P         +++L LS N F+G   
Sbjct:   421 GSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFL 480

Query:   156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLAR 215
                 +  SL  L + +N  TG I   L      L  L +S N L G +         L  
Sbjct:   481 PRETNFPSLDVLRMDNNLFTGNIGGGLSNSTM-LRILDMSNNGLSGAIPRWLFEFPYLDY 539

Query:   216 LHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM-MAINHLQGP 274
             + +  N+  G IP SL     L  L +S N   G +P+ +   S L   M +  N+  GP
Sbjct:   540 VLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVD--SELGIYMFLHNNNFTGP 597

Query:   275 IPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 334
             IP     L  ++ILDL  N +SG++P      +I  + L  N L G +      + S++ 
Sbjct:   598 IPDTL--LKSVQILDLRNNKLSGSIPQFDDTQSINILLLKGNNLTGSIPR-ELCDLSNVR 654

Query:   335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
              LDLS N  +G IP  +  L+  R   L  + +   +P    +   L +    +  L  +
Sbjct:   655 LLDLSDNKLNGVIPSCLSNLSFGR---LQEDAMALNIPPSFLQTS-LEMELYKSTFLVDK 710

Query:   395 IP---GCLDNTSLHNNGDN--DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT 449
             I         T +        D  S  + +    L  MYG+DLS N+L+G IP ++G L 
Sbjct:   711 IEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLL 770

Query:   450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
              +R LN SHN+L G IP SFS L  VESLD+S+N L G IP  L  L  LAVF V+ NNL
Sbjct:   771 KLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNL 830

Query:   510 SGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVPE-ASN---EEDGNSLIDMGS 564
             SG IP+   QF TF+E+SY GNPLLCG P    C+    PE A N   EED  + IDM  
Sbjct:   831 SGIIPQGR-QFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMV 889

Query:   565 FYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTS 604
             FY +  S YV  ++ ++ ++  +  WRR W  +++ ++ S
Sbjct:   890 FYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 586 (211.3 bits), Expect = 5.6e-56, P = 5.6e-56
 Identities = 162/487 (33%), Positives = 251/487 (51%)

Query:   102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM 161
             SGP          LDTL+++ N F G IP E+G     ++ L L +N   G IP  +G +
Sbjct:   297 SGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKC-KSMIDLQLQQNQLEGEIPGELGML 355

Query:   162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
             + L++L L  N L+GE+P   +    +L+ L L +N+L G+L      L++L  L L  N
Sbjct:   356 SQLQYLHLYTNNLSGEVPLS-IWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYEN 414

Query:   222 YCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281
             + TG IP+ L   S LE L ++ N   G+IP  L +   L  +++  N+L+G +P +   
Sbjct:   415 HFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGG 474

Query:   282 LNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 341
              + LE L L ENN+ G LP       +    LS N   GP+   +  N  ++  + LS N
Sbjct:   475 CSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIP-PSLGNLKNVTAIYLSSN 533

Query:   342 SFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN 401
               SG+IP  +  L +L +L L++N L+G +P++L    +L  +D S+N L G IP  L +
Sbjct:   534 QLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGS 593

Query:   402 -TSLH--NNGDNDGSSA-PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFS 457
              T L   + G+N  S   PT       NK+  + L  N L G+IPP +G L ++R+LN S
Sbjct:   594 LTELTKLSLGENSFSGGIPTSLFQS--NKLLNLQLGGNLLAGDIPP-VGALQALRSLNLS 650

Query:   458 HNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWT 517
              N L G +P+    LK +E LDVS+NNL+G +   L  +  L   +++HN  SG +P   
Sbjct:   651 SNKLNGQLPIDLGKLKMLEELDVSHNNLSGTLRV-LSTIQSLTFINISHNLFSGPVPPSL 709

Query:   518 AQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVI 577
              +F      S+ GN  LC    P  D  A PE+S     N   + G   ++     +IV+
Sbjct:   710 TKFLNSSPTSFSGNSDLCIN-CP-ADGLACPESSILRPCNMQSNTGKGGLSTLGIAMIVL 767

Query:   578 LAIIGVL 584
              A++ ++
Sbjct:   768 GALLFII 774

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 6.0e-56, P = 6.0e-56
 Identities = 159/475 (33%), Positives = 244/475 (51%)

Query:   115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
             L  L + +N   G  PL +      L  L++S N F+G IP  IG++  L+ L L++N L
Sbjct:   310 LQVLDLQENRISGRFPLWL-TNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSL 368

Query:   175 TGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC 234
             TGEIP  +   C +L+ L    NSL GQ+     Y++ L  L L  N  +G +P S+ N 
Sbjct:   369 TGEIPVEIK-QCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNL 427

Query:   235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENN 294
               LE L + +NNL G+ P  L  L+SL+++ ++ N   G +P+    L+ L  L+LS N 
Sbjct:   428 QQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNG 487

Query:   295 ISGTLP-SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER 353
              SG +P S  +   +  + LSK  + G +         ++  + L  N+FSG +P     
Sbjct:   488 FSGEIPASVGNLFKLTALDLSKQNMSGEVPV-ELSGLPNVQVIALQGNNFSGVVPEGFSS 546

Query:   354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS----LHNNGD 409
             L  LRY+ L++N+  GE+P     L+ L  + LS+N++ G IP  + N S    L    +
Sbjct:   547 LVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSN 606

Query:   410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSF 469
                   P      P  K+  +DL  N L+GEIPP+I + +S+ +L+  HN+L+GVIP SF
Sbjct:   607 RLMGHIPADLSRLPRLKV--LDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSF 664

Query:   470 SNLKQVESLDVSYNNLNGKIPPQLVELNV-LAVFSVAHNNLSGKIPEWTAQFTTFKEDSY 528
             S L  +  +D+S NNL G+IP  L  ++  L  F+V+ NNL G+IP             +
Sbjct:   665 SGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEF 723

Query:   529 EGNPLLCGKPLPD-CDVAAVPEASNEEDGNSLIDM---GSFYIT-FTSSYVIVIL 578
              GN  LCGKPL   C+ +       +     +I M   G+F ++ F   YV  +L
Sbjct:   724 SGNTELCGKPLNRRCESSTAEGKKKKRKMILMIVMAAIGAFLLSLFCCFYVYTLL 778

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2020457 BRL1 "BRI1 like" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
 Identities = 139/419 (33%), Positives = 209/419 (49%)

Query:   114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGDMN-SLKFLDLSH 171
             +L ++++S N   G +          L  ++LS N  +  IP S I D   SLK+LDL+H
Sbjct:   152 NLVSVNISNNKLVGKLGFAPSS-LQSLTTVDLSYNILSDKIPESFISDFPASLKYLDLTH 210

Query:   172 NQLTGEIPEHLVIG-CFNLEYLVLSENSLHGQLFYKKIYLRK-LARLHLDANYCTGEIPK 229
             N L+G+  + L  G C NL +  LS+N+L G  F   +   K L  L++  N   G+IP 
Sbjct:   211 NNLSGDFSD-LSFGICGNLTFFSLSQNNLSGDKFPITLPNCKFLETLNISRNNLAGKIPN 269

Query:   230 S--LSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM-MAINHLQGPIPLEFCQLNYLE 286
                  +   L+ L ++ N L G IP  L  L     I+ ++ N   G +P +F    +L+
Sbjct:   270 GEYWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQ 329

Query:   287 ILDLSENNISGT-LPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 344
              L+L  N +SG  L +  S  T I  ++++ N + G +   +  N S++  LDLS N F+
Sbjct:   330 NLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPI-SLTNCSNLRVLDLSSNGFT 388

Query:   345 GNIPYWIERLTR---LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPG---C 398
             GN+P     L     L  +++ANN L G VP +L + K L+ IDLS N L G IP     
Sbjct:   389 GNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWM 448

Query:   399 LDNTS-LHNNGDNDGSSAPTRY--KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALN 455
             L N S L    +N   + P     KG  L  +    L+ N LTG IP  I + T++  ++
Sbjct:   449 LPNLSDLVMWANNLTGTIPEGVCVKGGNLETLI---LNNNLLTGSIPESISRCTNMIWIS 505

Query:   456 FSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514
              S N LTG IP    NL ++  L +  N+L+G +P QL     L    +  NNL+G +P
Sbjct:   506 LSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLP 564

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	623
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-38
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  217 bits (553), Expect = 2e-60
 Identities = 169/558 (30%), Positives = 252/558 (45%), Gaps = 86/558 (15%)

Query: 42  LESVKLSGSGIHATFPK-FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           ++++ LS + +    P         L Y++ S++N  G  P   +    NL TL L NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNM 151

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVY----------------FPR----- 139
           LSG     I     L  L +  N   G IP  +                    PR     
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 140 --LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
             L ++ L  N+ +G IP  IG + SL  LDL +N LTG IP  L     NL+YL L +N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQN 270

Query: 198 SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN 257
            L G +      L+KL  L L  N  +GEIP+ +     LE L++  NN  G IP  L +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 258 LSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHSTIQQVHLSK 315
           L  L  + +  N   G IP    + N L +LDLS NN++G +P   CSS +  + +  S 
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS- 389

Query: 316 NMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373
           N L G  P   G      S+  + L  NSFSG +P    +L  + +L ++NNNL+G + +
Sbjct: 390 NSLEGEIPKSLGAC---RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 374 QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLS 433
           +   +  L+++ L+ N  FG +P            D+ GS            ++  +DLS
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLP------------DSFGSK-----------RLENLDLS 483

Query: 434 CNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQL 493
            N+ +G +P ++G L+ +  L  S N L+G IP   S+ K++ SLD+S+N L+G+IP   
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 494 VELNVLAVFSVAHNNLSGKIPE-----------------------WTAQFTTFKEDSYEG 530
            E+ VL+   ++ N LSG+IP+                        T  F      +  G
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603

Query: 531 NPLLCG----KPLPDCDV 544
           N  LCG      LP C  
Sbjct: 604 NIDLCGGDTTSGLPPCKR 621

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  187 bits (477), Expect = 2e-50
 Identities = 133/426 (31%), Positives = 202/426 (47%), Gaps = 70/426 (16%)

Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
             R+V ++LS  + +G I S+I  +  ++ ++LS+NQL+G IP+ +     +L YL LS 
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 197 NSLHG-----------------QLFYKKIYLR-----KLARLHLDANYCTGEIPKSLSNC 234
           N+  G                  +   +I         L  L L  N   G+IP SL+N 
Sbjct: 128 NNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENN 294
           + LE L ++ N L G IP  LG + SL  I +  N+L G IP E   L  L  LDL  NN
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 295 ISGTLP-SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER 353
           ++G +P S  +   +Q + L +N L GP+   + F+   +++LDLS NS SG IP  + +
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGS 413
           L  L  L L +NN  G++P  L  L +L+++ L +N   G+IP    N   HNN      
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK---NLGKHNN------ 357

Query: 414 SAPTRYKGKPLNKMYGVDLSCNKLTGEI------------------------PPQIGKLT 449
                        +  +DLS N LTGEI                        P  +G   
Sbjct: 358 -------------LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
           S+R +    N+ +G +P  F+ L  V  LD+S NNL G+I  +  ++  L + S+A N  
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 510 SGKIPE 515
            G +P+
Sbjct: 465 FGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  151 bits (384), Expect = 2e-38
 Identities = 99/290 (34%), Positives = 149/290 (51%), Gaps = 31/290 (10%)

Query: 241 YMSDNNLYGNIPAWLG----NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
           Y+S+ N   ++  W G    N S +  I ++  ++ G I     +L Y++ ++LS N +S
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 297 GTLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL 354
           G +P    ++ S+++ ++LS N   G +  G+  N   + TLDLS N  SG IP  I   
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSF 163

Query: 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSS 414
           + L+ L L  N L G++PN L  L  L  + L++N L GQIP  L               
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-------------- 209

Query: 415 APTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQ 474
                + K L  +Y   L  N L+GEIP +IG LTS+  L+  +NNLTG IP S  NLK 
Sbjct: 210 -----QMKSLKWIY---LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 475 VESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFK 524
           ++ L +  N L+G IPP +  L  L    ++ N+LSG+IPE   Q    +
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  151 bits (382), Expect = 3e-38
 Identities = 99/287 (34%), Positives = 152/287 (52%), Gaps = 29/287 (10%)

Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY-LEILDL 290
           +N S +  + +S  N+ G I + +  L  +  I ++ N L GPIP +    +  L  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 291 SENNISGTLPSCSSHSTIQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
           S NN +G++P   S   ++ + LS NML G  P   G+F   SS+  LDL  N   G IP
Sbjct: 126 SNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSF---SSLKVLDLGGNVLVGKIP 181

Query: 349 YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG 408
             +  LT L +L LA+N L G++P +L ++K L+ I L  NNL G+IP            
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP------------ 229

Query: 409 DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS 468
                     Y+   L  +  +DL  N LTG IP  +G L +++ L    N L+G IP S
Sbjct: 230 ----------YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 469 FSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
             +L+++ SLD+S N+L+G+IP  +++L  L +  +  NN +GKIP 
Sbjct: 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.2 bits (198), Expect = 9e-16
 Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 25/170 (14%)

Query: 429 GVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK 488
           G+ L    L G IP  I KL  ++++N S N++ G IP S  ++  +E LD+SYN+ NG 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 489 IPPQLVELNVLAVFSVAHNNLSGKIPEWTA----QFTTFKEDSYEGNPLLCGKP-LPDCD 543
           IP  L +L  L + ++  N+LSG++P           +F   ++  N  LCG P L  C 
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLRAC- 537

Query: 544 VAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRR 593
                       G  L       I F  S   + L I  + +    W+RR
Sbjct: 538 ------------GPHLSVGAKIGIAFGVSVAFLFLVICAMCW----WKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 9e-13
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 94  LVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS 153
           L L N  L G     I    HL ++++S N  +GNIP  +G     L  L+LS N FNGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 154 IPSSIGDMNSLKFLDLSHNQLTGEIPEHL 182
           IP S+G + SL+ L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 26/120 (21%)

Query: 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH 171
            W +D L +     +G IP +I      L  +NLS N   G+IP S+G + SL+ LDLS+
Sbjct: 417 KWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 172 NQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
           N   G IPE L                  GQ       L  L  L+L+ N  +G +P +L
Sbjct: 476 NSFNGSIPESL------------------GQ-------LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 25/128 (19%)

Query: 271 LQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR 330
           L+G IP +  +L +L+ ++LS N+I G +P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL-CRLKQLRLIDLSNN 389
           +S+  LDLSYNSF+G+IP  + +LT LR L L  N+L G VP  L  RL      + ++N
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Query: 390 NLFGQIPG 397
                IPG
Sbjct: 526 AGLCGIPG 533

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 5e-10
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query: 216 LHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI 275
           L LD     G IP  +S    L+ + +S N++ GNIP  LG+++SL  + ++ N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 276 PLEFCQLNYLEILDLSENNISGTLPS 301
           P    QL  L IL+L+ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
           +++LS NS  GNIP  +  +T L  L L+ N+  G +P  L +L  LR+++L+ N+L G+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 395 IPGCLDNTSLH----NNGDNDG 412
           +P  L    LH    N  DN G
Sbjct: 506 VPAALGGRLLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 31/85 (36%), Positives = 43/85 (50%)

Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
           L L    L G +      LR L  ++L  N   G IP SL + + LE L +S N+  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 252 PAWLGNLSSLNDIMMAINHLQGPIP 276
           P  LG L+SL  + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 430 VDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
           +DLS N+LT  IP      L +++ L+ S NNLT + P +FS L  + SLD+S NNL
Sbjct: 5   LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 89/358 (24%), Positives = 137/358 (38%), Gaps = 71/358 (19%)

Query: 75  NLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIG 134
           NLK E P+  L   TNL TL L + S        IQ    L+ L +S+      +P   G
Sbjct: 646 NLK-EIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--TG 700

Query: 135 VYFPRLVYLNL---SRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191
           +    L  LNL   SR      I ++I       +LDL    +  E P +L +   NL+ 
Sbjct: 701 INLKSLYRLNLSGCSRLKSFPDISTNI------SWLDLDETAIE-EFPSNLRLE--NLDE 751

Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP-LEGLYMSDNNLYGN 250
           L+L E      +  +K++ R      L            ++  SP L  L++SD      
Sbjct: 752 LILCE------MKSEKLWERVQPLTPL------------MTMLSPSLTRLFLSDIPSLVE 793

Query: 251 IPAWLGNLSSLN--DIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTI 308
           +P+ + NL  L   +I   IN    P  +       LE LDLS  +   T P  S+    
Sbjct: 794 LPSSIQNLHKLEHLEIENCINLETLPTGINL---ESLESLDLSGCSRLRTFPDIST---- 846

Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN-NNL 367
                                  +I  L+LS       +P+WIE+ + L +L +   NNL
Sbjct: 847 -----------------------NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882

Query: 368 EGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN 425
           +    N + +LK L  +D S+     +       + +    DN  S  P+      +N
Sbjct: 883 QRVSLN-ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN 939

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           +LDLS N  +       + L  L+ L L+ NNL    P     L  LR +DLS NNL
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 25/126 (19%)

Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395
           L L      G IP  I +L  L+ + L+ N++ G +P  L  +  L ++DLS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 396 PGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRA- 453
           P  L   TSL                 + LN      L+ N L+G +P  +G     RA 
Sbjct: 483 PESLGQLTSL-----------------RILN------LNGNSLSGRVPAALGGRLLHRAS 519

Query: 454 LNFSHN 459
            NF+ N
Sbjct: 520 FNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
            L  L+LS N        +   + +LK LDLS N LT  I      G  +L  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 199 L 199
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ 173
           +L +L +S N     IP       P L  L+LS N+     P +   + SL+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 174 L 174
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 74/285 (25%), Positives = 110/285 (38%), Gaps = 34/285 (11%)

Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN-----LSSLNDIMMAINHLQGPIPLEFC 280
           +  ++L N  PL  L ++ N L  NI   L       L   N+ +  I  L G +     
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 281 QLNY-----------------LEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLK 323
           +L+                  L+ LDLS N++S      S+ S +  + LS N +     
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI--SDL 201

Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRL 383
                  S++  LDLS NS    +   +  L  L  L L+NN LE ++P  +  L  L  
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 384 IDLSNNNLFGQIP--GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI 441
           +DLSNN +   I   G L N    +   N  S+A        L       L    LT + 
Sbjct: 260 LDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL---ELLLNLLLTLKA 315

Query: 442 PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
                KL SI   N   +N     P + S L+ + +L    N L+
Sbjct: 316 LEL--KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
           ++++L+ S+N LT +   +F  L  ++ LD+S NNL    P     L  L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 37/185 (20%)

Query: 333 IVTLDLSYNSFSGNIPYWIERLTR---LRYLILANNNLEGEVPNQLCR-LKQ----LRLI 384
           +  LDLS N+   +    +E L R   L+ L L NN L       L + LK     L  +
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 385 DLSNNNLFGQIPGCLD-------NTSLH-----NNGDNDGSSAPTRYKGKPLNKMYGVDL 432
            L  N L G    C         N  L      NNG  D          K    +  +DL
Sbjct: 143 VLGRNRLEGA--SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 433 SCNKLT-------GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN-----LKQVESLDV 480
           + N LT        E       L S+  LN   NNLT     + ++        + +L +
Sbjct: 201 NNNGLTDEGASALAETLAS---LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 481 SYNNL 485
           S N++
Sbjct: 258 SCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	623
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.49
PLN03150	623	hypothetical protein; Provisional	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.07
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG4341	483	consensus F-box protein containing LRR [General fu	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG4341	483	consensus F-box protein containing LRR [General fu	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.72
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.04
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.33
KOG4308	478	consensus LRR-containing protein [Function unknown	92.98
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.81
smart00370	26	LRR Leucine-rich repeats, outliers.	92.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.51
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.64
smart00370	26	LRR Leucine-rich repeats, outliers.	91.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.55
KOG4308	478	consensus LRR-containing protein [Function unknown	89.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.42
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.01
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.1

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.1e-58  Score=527.51  Aligned_cols=522  Identities=32%  Similarity=0.487  Sum_probs=410.2

Q ss_pred             ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC
Q 038273            8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN   87 (623)
Q Consensus         8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~   87 (623)
                      +.+..+++|++|+|++|++.+..+... +..+.+|++|++++|.+++.+|.  +.+++|++|++++|.+++.+|..+ ..
T Consensus        87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~  162 (968)
T PLN00113         87 SAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GS  162 (968)
T ss_pred             hHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hc
Confidence            467788888888888888765444321 11334888888888888777664  467888888888888887777764 78


Q ss_pred             CCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEE
Q 038273           88 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFL  167 (623)
Q Consensus        88 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  167 (623)
                      +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..+.++++|++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            888888888888888888888888888888888888888778877766 6788888888888888888888888888888


Q ss_pred             EccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcC
Q 038273          168 DLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL  247 (623)
Q Consensus       168 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  247 (623)
                      ++++|.+++.+|..+ .++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       242 ~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        242 DLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             ECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            888888886677655 6788888888888888887888888888888888888888888888888888888888888888


Q ss_pred             ccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccccCCCCC
Q 038273          248 YGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKYGT  326 (623)
Q Consensus       248 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~  326 (623)
                      .+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|... ..++++.+++++|.+.+.++.. 
T Consensus       321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-  399 (968)
T PLN00113        321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-  399 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-
Confidence            88888888888888888888888888888888888888888888888887776654 5678888888888887777765 


Q ss_pred             ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273          327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  406 (623)
Q Consensus       327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  406 (623)
                      +..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+....+..
T Consensus       400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~  479 (968)
T PLN00113        400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN  479 (968)
T ss_pred             HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceE
Confidence            77788888888888888888888888888888888888888888887788888888888888888877777654433222


Q ss_pred             C--CCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273          407 N--GDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN  484 (623)
Q Consensus       407 ~--~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  484 (623)
                      +  ..+......+ .....+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|+.|+|++|+
T Consensus       480 L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        480 LDLSRNQFSGAVP-RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             EECcCCccCCccC-hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence            1  1111111111 112246678888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273          485 LNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  538 (623)
Q Consensus       485 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~  538 (623)
                      +++.+|..+..+++|+.+++++|++.+.+|.. ..+.++....+.|||.+|+.+
T Consensus       559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            88888888888888888888888888877764 356666777778888888643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-57  Score=517.86  Aligned_cols=495  Identities=30%  Similarity=0.429  Sum_probs=415.7

Q ss_pred             ccCCCccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCCh
Q 038273            3 IPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPN   82 (623)
Q Consensus         3 g~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (623)
                      |.++...+.++++|++|++++|++.+..+..    ...+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus       107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  182 (968)
T PLN00113        107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN  182 (968)
T ss_pred             CcCChHHhccCCCCCEEECcCCccccccCcc----ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence            4444334569999999999999987654432    233899999999999989999999999999999999999888888


Q ss_pred             HHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCC
Q 038273           83 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN  162 (623)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  162 (623)
                      .+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+.+++
T Consensus       183 ~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        183 SL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             hh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCC
Confidence            75 89999999999999999989999999999999999999999889988876 78999999999999988999999999


Q ss_pred             CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEEC
Q 038273          163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYM  242 (623)
Q Consensus       163 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  242 (623)
                      +|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            99999999999987788776 57999999999999999888888999999999999999999888988999999999999


Q ss_pred             cCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCcccccc
Q 038273          243 SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGP  321 (623)
Q Consensus       243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~  321 (623)
                      ++|.+.+..|..++.+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|... .+++|+.|++++|.+++.
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            9999998899999999999999999999988888888888899999999998887777654 578889999999888877


Q ss_pred             CCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCcccc
Q 038273          322 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN  401 (623)
Q Consensus       322 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  401 (623)
                      .+.. |..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+..
T Consensus       420 ~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        420 LPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             CChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence            7765 7788888888888888888888777788888888888888877666644 4577888888888888777766554


Q ss_pred             ccc-c--CCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEE
Q 038273          402 TSL-H--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL  478 (623)
Q Consensus       402 ~~l-~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  478 (623)
                      ..- .  ....+......+ .....+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+.++++|+.|
T Consensus       498 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhccCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            321 1  111111111111 112346799999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcccccCccccccCCCCCeeecccCc
Q 038273          479 DVSYNNLNGKIPPQLVELNVLAVFSVAHNN  508 (623)
Q Consensus       479 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~  508 (623)
                      ++++|++.+.+|.. ..+..+......+|+
T Consensus       577 ~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        577 NISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             eccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            99999999988865 334445555566665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-44  Score=348.37  Aligned_cols=380  Identities=23%  Similarity=0.271  Sum_probs=271.5

Q ss_pred             EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273          117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE  196 (623)
Q Consensus       117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  196 (623)
                      +|++++|++. .+....+..+++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+ ++.......++.|+.||++.
T Consensus        82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence            3455555444 333333333445555555555544 34444444444555555555554 44444334455555555555


Q ss_pred             CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273          197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP  276 (623)
Q Consensus       197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  276 (623)
                      |.|+......|..-.++++|+|++|.++....+.|.++.+|..|.|+.|+++...+..|..+++|+.|++..|++.-..-
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            55444433444444445555555555554444555555555555555555555555555555555555555555553334


Q ss_pred             ccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcccc
Q 038273          277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR  356 (623)
Q Consensus       277 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  356 (623)
                      ..|.++++|+.|.+..|++.                        .+..++|..+.++++|+|+.|++...-.+|+-+++.
T Consensus       239 ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccch
Confidence            44555555555555555443                        455667999999999999999999888889999999


Q ss_pred             CcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc
Q 038273          357 LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK  436 (623)
Q Consensus       357 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  436 (623)
                      |+.|++++|.|....++.+..+++|+.|++++|+++...++.+..++                      .|+.|.|++|.
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~----------------------~Le~LnLs~Ns  352 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS----------------------QLEELNLSHNS  352 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH----------------------Hhhhhcccccc
Confidence            99999999999988899999999999999999999988887776655                      89999999999


Q ss_pred             ccccCCccccccccCCeeeCCCCcccccCCc---cCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccC
Q 038273          437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPV---SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKI  513 (623)
Q Consensus       437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  513 (623)
                      +.......|..+++|+.|||++|.++..+.+   .|.++++|+.|++.+|++..+...+|..+++|+.|||.+|.+..+.
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence            9988888999999999999999999876664   5889999999999999999888899999999999999999999999


Q ss_pred             CCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 038273          514 PEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  551 (623)
Q Consensus       514 ~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~~  551 (623)
                      |..|.++ .|++|-+..-.++|     +|...|..+|.
T Consensus       433 ~nAFe~m-~Lk~Lv~nSssflC-----DCql~Wl~qWl  464 (873)
T KOG4194|consen  433 PNAFEPM-ELKELVMNSSSFLC-----DCQLKWLAQWL  464 (873)
T ss_pred             ccccccc-hhhhhhhcccceEE-----eccHHHHHHHH
Confidence            9999888 99999999999999     66666666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-41  Score=327.17  Aligned_cols=366  Identities=22%  Similarity=0.218  Sum_probs=197.7

Q ss_pred             EEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEeccc
Q 038273           68 YVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSR  147 (623)
Q Consensus        68 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~  147 (623)
                      .||+++|++. .+.-..|.++++|+.+++.+|.++. +|...+...+|+.|+|.+|.|+ ++..+-...++.|+.|||+.
T Consensus        82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccc-cCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence            3555555444 2333333445555555554444432 2333333334555555555444 33332222344455555555


Q ss_pred             CcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCcccc
Q 038273          148 NDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEI  227 (623)
Q Consensus       148 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  227 (623)
                      |.|+.+.-..|..-.++++|+|++|.|+ .+..+.|.++.+|..|.+++|+++...+..|.++++|+.|+|..|.+....
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            5544333334444444555555555554 444444444445555555555554444444444555555555555444332


Q ss_pred             CccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCc
Q 038273          228 PKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHST  307 (623)
Q Consensus       228 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  307 (623)
                      .-+|.++++|+.|.+..|.+.......|..|.++++|+++.|++......++.++++|+.|++++|.|...         
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri---------  308 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI---------  308 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee---------
Confidence            33455555555555555555544455555555555555555555555555555566666666666555311         


Q ss_pred             ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273          308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS  387 (623)
Q Consensus       308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  387 (623)
                                     ..+.+..+++|++|+|++|+++...++.|..+..|++|+|++|.+...-..+|.++++|+.||++
T Consensus       309 ---------------h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  309 ---------------HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             ---------------ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence                           11124445666666666666666666666667777777777777765556666777777777777


Q ss_pred             CCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCc
Q 038273          388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV  467 (623)
Q Consensus       388 ~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  467 (623)
                      +|.+.+.+.+.-..                 |  .++++|+.|++.+|++......+|.++.+|++|||.+|.|.++.|+
T Consensus       374 ~N~ls~~IEDaa~~-----------------f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  374 SNELSWCIEDAAVA-----------------F--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             CCeEEEEEecchhh-----------------h--ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence            77766544331111                 1  1245666666666666655556777777777777777777777777


Q ss_pred             cCCCCCCCcEEECC
Q 038273          468 SFSNLKQVESLDVS  481 (623)
Q Consensus       468 ~~~~l~~L~~L~Ls  481 (623)
                      +|..+ .|++|.++
T Consensus       435 AFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  435 AFEPM-ELKELVMN  447 (873)
T ss_pred             ccccc-hhhhhhhc
Confidence            77777 67777554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.5e-41  Score=313.20  Aligned_cols=455  Identities=27%  Similarity=0.341  Sum_probs=268.6

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      -++.+.++.|.+. .+...+.++..|.+|++++|++. +.|+.+ +.+..++.+++++|++.. +|..+..+.+|+.+++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhc
Confidence            4555555555543 22333455555555555555555 445444 445555555555555432 3444555555555555


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      +.|.+. ++|++++.. -.++.++..+|+++ ..|.++..+.+|..+++.+|++. ..|+.... ++.|++|+...|.+.
T Consensus       122 s~n~~~-el~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE  196 (565)
T ss_pred             ccccee-ecCchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh
Confidence            555555 455555542 25555555555555 34445555555555555555555 44444432 555555555554443


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                       .+|..++.+.+|..|++..|++. ..| .|.+|..|+++.++.|++.....+....++++..||+.+|++. ..|..++
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence             34445555555555555555554 333 3555555555555555554222222334555555555555555 3444455


Q ss_pred             CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCcccc-------------------------------------ccCC
Q 038273          281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLY-------------------------------------GPLK  323 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~-------------------------------------~~~~  323 (623)
                      .+++|+.||+++|.+++..+....+ .|+.|-+.+|.+.                                     +..+
T Consensus       273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~  351 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP  351 (565)
T ss_pred             HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence            5555555555555555333333333 4555555555430                                     0111


Q ss_pred             CCC---ccCCCceeEEeCCCCcCCCCCchhhhccc--cCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCc
Q 038273          324 YGT---FFNRSSIVTLDLSYNSFSGNIPYWIERLT--RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC  398 (623)
Q Consensus       324 ~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  398 (623)
                      ...   .....+.+.|++++-+++.+..+.|..-.  -.+..+++.|++. ++|..+..+..+.+.-+..|+..+.+|..
T Consensus       352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~  430 (565)
T KOG0472|consen  352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLE  430 (565)
T ss_pred             CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence            111   22334567777777777743333343321  2677788888877 66666655555544333334444455554


Q ss_pred             cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEE
Q 038273          399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL  478 (623)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  478 (623)
                      +..                      +++|..|++++|-+. .+|..++.+..|+.|+++.|.+. .+|.....+..++.+
T Consensus       431 l~~----------------------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtl  486 (565)
T KOG0472|consen  431 LSQ----------------------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETL  486 (565)
T ss_pred             HHh----------------------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHH
Confidence            444                      458999999999888 78888999999999999999988 788888888888888


Q ss_pred             ECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273          479 DVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       479 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      -.++|++....|+.+.++..|.+||+.+|.+. .+|..++.+++++.+.+.|||+.-
T Consensus       487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence            88889999777788999999999999999998 456668899999999999999973

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.6e-41  Score=313.11  Aligned_cols=450  Identities=24%  Similarity=0.340  Sum_probs=283.4

Q ss_pred             CcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEE
Q 038273           16 LKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLV   95 (623)
Q Consensus        16 L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (623)
                      |+.++++.|++....++.   -....+..|+++.|+++ ..|++++++..++.++.++|++. .+|+.+ ..+.+|+.++
T Consensus        47 l~~lils~N~l~~l~~dl---~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDL---KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhccHhh---hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhh
Confidence            455555555554433332   12224556666666554 44555566666666666666655 555554 4555566666


Q ss_pred             ccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCC
Q 038273           96 LRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLT  175 (623)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  175 (623)
                      +++|.+.. .++.++.+..|..++-.+|+++ +.|..++. +.++..+++.+|+++...|..+ +++.|++||...|.+.
T Consensus       121 ~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE  196 (565)
T ss_pred             ccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh
Confidence            66555533 3444555555555555555555 55555554 3355555555555553322222 2555555555555554


Q ss_pred             cccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhc
Q 038273          176 GEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL  255 (623)
Q Consensus       176 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  255 (623)
                       .+|+.+ +++.+|+-|++..|.+.. .| .|.++..|++++++.|.+.-...+...+++++..||+.+|+++ ..|+.+
T Consensus       197 -tlP~~l-g~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~  271 (565)
T KOG0472|consen  197 -TLPPEL-GGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI  271 (565)
T ss_pred             -cCChhh-cchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHH
Confidence             555555 345555555555555542 22 4555555555555555554222222335555555555555554 445555


Q ss_pred             cCCCCCCEEECccccccccccccccCCCCCcEEeCcCcccee--------------------------------------
Q 038273          256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG--------------------------------------  297 (623)
Q Consensus       256 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------------------------  297 (623)
                      ..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+..                                      
T Consensus       272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            55555555555555555 334445555 55555555554320                                      


Q ss_pred             ----eCCCCCCCCcccEEEccCccccccCCCCCccCCC--ceeEEeCCCCcCCCCCchhhhccccCc-EEEccccccccc
Q 038273          298 ----TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS--SIVTLDLSYNSFSGNIPYWIERLTRLR-YLILANNNLEGE  370 (623)
Q Consensus       298 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~  370 (623)
                          ..|......+.+.|++++-++ ..+|...|..-.  -++..++++|++. ..|..+..+..+. .+.+++|.+. .
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-f  426 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-F  426 (565)
T ss_pred             CCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-c
Confidence                111112345678888888777 456666554432  3788999999998 5777676665554 4556666665 8


Q ss_pred             CchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccccccc
Q 038273          371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS  450 (623)
Q Consensus       371 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  450 (623)
                      .|..++.+++|..|++++|.+. .+|..+..                      +..|+.|+++.|.+. ..|..+..+..
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~----------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~  482 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGS----------------------LVRLQTLNLSFNRFR-MLPECLYELQT  482 (565)
T ss_pred             chHHHHhhhcceeeecccchhh-hcchhhhh----------------------hhhhheecccccccc-cchHHHhhHHH
Confidence            8888999999999999988775 45554443                      337999999999998 88998888888


Q ss_pred             CCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccc
Q 038273          451 IRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS  510 (623)
Q Consensus       451 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  510 (623)
                      ++.+-.++|++..+.|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|++++|++.
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999999999888888999999999999999999 78889999999999999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=4.7e-35  Score=286.60  Aligned_cols=364  Identities=26%  Similarity=0.363  Sum_probs=241.7

Q ss_pred             cccEEEccCCCCCCC-CCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEE
Q 038273           41 QLESVKLSGSGIHAT-FPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH  119 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  119 (623)
                      -++-+++++|.++|. +|.....++.++.|.|....+. .+|+.+ +.+.+|++|.+++|++... -..+..++.|+.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence            467788888888854 8888888999999999888887 888886 7888999999999987653 34567788889999


Q ss_pred             ccCCCCC-CCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc
Q 038273          120 VSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS  198 (623)
Q Consensus       120 l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  198 (623)
                      +..|++. .-||..++. +..|..||||+|+++ ..|..+.+-.++-+|+|++|+|. +||..+|.++..|-.||+++|+
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            9888876 358888888 678999999999988 68888888899999999999998 9999999889999999999888


Q ss_pred             CccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc-cccchhccCCCCCCEEECccccccccccc
Q 038273          199 LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY-GNIPAWLGNLSSLNDIMMAINHLQGPIPL  277 (623)
Q Consensus       199 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  277 (623)
                      +. .+|..+..+.+|++|++++|.+.-.--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            76 45556666777777777777654322233445566666666665432 245555666666666666666665 5566


Q ss_pred             cccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccC
Q 038273          278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRL  357 (623)
Q Consensus       278 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  357 (623)
                      .+..+++|+.|++|+|.++..             .+           . .....+|++|+++.|+++ ..|+++..+++|
T Consensus       240 cly~l~~LrrLNLS~N~iteL-------------~~-----------~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL  293 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITEL-------------NM-----------T-EGEWENLETLNLSRNQLT-VLPDAVCKLTKL  293 (1255)
T ss_pred             HHhhhhhhheeccCcCceeee-------------ec-----------c-HHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence            666666666666666655410             00           0 111234455555555554 444444444555


Q ss_pred             cEEEcccccccc-cCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc
Q 038273          358 RYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK  436 (623)
Q Consensus       358 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  436 (623)
                      +.|.+.+|++.- -+|..++.+.+|+.+..++|.                                              
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~----------------------------------------------  327 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK----------------------------------------------  327 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhccc----------------------------------------------
Confidence            555444444431 123333333333333333333                                              


Q ss_pred             ccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                      +. ..|+.+..+..|+.|.|++|.+. .+|+++.-++.|+.||+..|.-.
T Consensus       328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            22 55666666666666666666665 45666666666666666666544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-34  Score=295.44  Aligned_cols=467  Identities=26%  Similarity=0.299  Sum_probs=295.5

Q ss_pred             CcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEE
Q 038273           16 LKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLV   95 (623)
Q Consensus        16 L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (623)
                      +..|+++.|-+.....+  ..-.+.+|+.|++++|+++ .+|..+..+.+|+.|.++.|.+. ..|... .++.+|+++.
T Consensus        23 ~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~ln   97 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLN   97 (1081)
T ss_pred             HHhhhccccccccCchH--HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhhe
Confidence            55666666544322111  1122336777788777764 66777777777788888777777 667554 6777778777


Q ss_pred             ccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccC-------------------cccccCCc
Q 038273           96 LRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN-------------------DFNGSIPS  156 (623)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n-------------------~i~~~~~~  156 (623)
                      |.+|++.. .|..+..+.+|++|+++.|.+. .+|.-+.. +..++.+..++|                   .+.+.++.
T Consensus        98 L~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~  174 (1081)
T KOG0618|consen   98 LKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI  174 (1081)
T ss_pred             eccchhhc-CchhHHhhhcccccccchhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence            77776643 5667777777777888777776 66655544 334444444444                   44444444


Q ss_pred             ccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCC
Q 038273          157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP  236 (623)
Q Consensus       157 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  236 (623)
                      ++..+++  .|++++|.+. .+.   ...+.+|+.+....|.+.....    .-++|+.|+.+.|.++...+.  ..-.+
T Consensus       175 ~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~n  242 (1081)
T KOG0618|consen  175 DIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLN  242 (1081)
T ss_pred             chhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--ccccc
Confidence            4444444  4555555553 222   1335555555555555442211    235666667777666633221  23356


Q ss_pred             CcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCc
Q 038273          237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN  316 (623)
Q Consensus       237 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  316 (623)
                      |++++++.|+++ ..|.++..+.+|+.+....|.+. ..|..+...++|+.|.+.+|.+....+......+|++|++..|
T Consensus       243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            777777777776 44577777778888887777775 5566666777777777777777755555556777777777777


Q ss_pred             cccccCCCCCccCCCc-eeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCC
Q 038273          317 MLYGPLKYGTFFNRSS-IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI  395 (623)
Q Consensus       317 ~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  395 (623)
                      ++ ...|...+.-... +..++.+.|++.......=...+.|+.|.+.+|.+++...+.+.+.+.|+.|++++|++....
T Consensus       321 ~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp  399 (1081)
T KOG0618|consen  321 NL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP  399 (1081)
T ss_pred             cc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence            77 3444443333322 566666666665322111223456788888888887766667778888888888888876444


Q ss_pred             CCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCC
Q 038273          396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQV  475 (623)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  475 (623)
                      ..++..                      ++.|+.|++|+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|
T Consensus       400 as~~~k----------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  400 ASKLRK----------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             HHHHhc----------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            444443                      347788888888888 67788888888888888888887 555 67778888


Q ss_pred             cEEECCCCccccc-CccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCC
Q 038273          476 ESLDVSYNNLNGK-IPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN  531 (623)
Q Consensus       476 ~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~N  531 (623)
                      +.+|++.|+++.. +|.... -+.|++||+++|.-.....+.+..+..+...++.-|
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            8888888888743 333322 278888888888755555555555555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-34  Score=293.79  Aligned_cols=448  Identities=24%  Similarity=0.318  Sum_probs=349.5

Q ss_pred             cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN   88 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l   88 (623)
                      ...+.-+|++|||++|.+.......   ....+|+.|+++.|.|. ..|....++.+|+++.|.+|.+. ..|.++ ..+
T Consensus        40 ~~~~~v~L~~l~lsnn~~~~fp~~i---t~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~l  113 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQISSFPIQI---TLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SEL  113 (1081)
T ss_pred             HhhheeeeEEeeccccccccCCchh---hhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhh
Confidence            3444556999999999876443332   33348999999999887 56788899999999999999988 889886 889


Q ss_pred             CCCCEEEccCCcCcCcCCCCCCCCCC-------------------CCEEEccCCCCCCCCChhhhhcCCCccEEecccCc
Q 038273           89 TNLNTLVLRNNSLSGPFRMPIQPHWH-------------------LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRND  149 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~-------------------L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  149 (623)
                      .+|+.|+++.|.+.. +|..+..++.                   .+.+++..|.+.+.++..+.. +..  .|+|++|.
T Consensus       114 knl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~  189 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNE  189 (1081)
T ss_pred             hcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh-hhe--eeecccch
Confidence            999999999998754 3443333332                   555666666666666666554 222  59999998


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCc
Q 038273          150 FNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK  229 (623)
Q Consensus       150 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  229 (623)
                      +.   -..+.++.+|+.+....|++. .+.    ...++|+.|+.+.|.+....+  .....+|+.++++.|+++ .+|+
T Consensus       190 ~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~  258 (1081)
T KOG0618|consen  190 ME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPE  258 (1081)
T ss_pred             hh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchH
Confidence            76   235778899999999999987 443    257889999999999873322  223468999999999999 4669


Q ss_pred             cCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC---CCC
Q 038273          230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS---SHS  306 (623)
Q Consensus       230 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~  306 (623)
                      ++..+.+|+.++..+|+++ ..|..+..+++|+.|.+..|.+. .+|....+++.|++|++..|++. ..|..+   ...
T Consensus       259 wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  259 WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA  335 (1081)
T ss_pred             HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH
Confidence            9999999999999999996 77888888999999999999998 45667788999999999999997 444433   234


Q ss_pred             cccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEc
Q 038273          307 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL  386 (623)
Q Consensus       307 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  386 (623)
                      +++.++.+.|++. ..+...-...+.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.++..|+.|++
T Consensus       336 ~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            5777777777773 333322345678999999999999887778889999999999999999777778899999999999


Q ss_pred             cCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCccccc-C
Q 038273          387 SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGV-I  465 (623)
Q Consensus       387 ~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~  465 (623)
                      ++|+++ .+|.++..+.                      .|++|...+|.+. ..| .+..++.|+.+|++.|+++.. +
T Consensus       415 SGNkL~-~Lp~tva~~~----------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLG----------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             ccchhh-hhhHHHHhhh----------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence            999997 4556666544                      8999999999998 667 789999999999999999754 3


Q ss_pred             CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccC
Q 038273          466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN  507 (623)
Q Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N  507 (623)
                      |.... -++|+.||+++|.=.......|..+.++...++.-|
T Consensus       470 ~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  470 PEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            33333 389999999999844455566666777777766666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7.1e-33  Score=271.41  Aligned_cols=369  Identities=22%  Similarity=0.267  Sum_probs=313.5

Q ss_pred             cCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCC
Q 038273           11 FNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTN   90 (623)
Q Consensus        11 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~   90 (623)
                      +=||-.|-.|+++|++++..-+... -...+++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~   79 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPR   79 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchh
Confidence            3466788899999999865432210 11128999999999885 68999999999999999999987 555554 78999


Q ss_pred             CCEEEccCCcCc-CcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEc
Q 038273           91 LNTLVLRNNSLS-GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDL  169 (623)
Q Consensus        91 L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  169 (623)
                      |+.+++..|++. +-+|..+..+..|..||||+|++. +.|..+-. -+++-+|+||+|+|..+....|.+++-|-+|||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            999999999885 457888889999999999999999 89998876 569999999999999665566889999999999


Q ss_pred             cCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc-cccCccCcCCCCCcEEECcCCcCc
Q 038273          170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT-GEIPKSLSNCSPLEGLYMSDNNLY  248 (623)
Q Consensus       170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~  248 (623)
                      ++|++. .+|+.+ ..+..|++|++++|.+.......+..+.+|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+.
T Consensus       158 S~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  158 SNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             ccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            999998 999988 67999999999999987766666667788899999987543 357888999999999999999998


Q ss_pred             cccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccc-cCCCCCc
Q 038273          249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTF  327 (623)
Q Consensus       249 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~  327 (623)
                       ..|+.+.++++|+.|++++|+++. .........+|++|++|+|+++........+++|+.|.+.+|+++- -+|.+ +
T Consensus       236 -~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-I  312 (1255)
T KOG0444|consen  236 -IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-I  312 (1255)
T ss_pred             -cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc-h
Confidence             789999999999999999999984 3445566789999999999998544445589999999999998853 34555 8


Q ss_pred             cCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCc
Q 038273          328 FNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF  392 (623)
Q Consensus       328 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  392 (623)
                      ..+.+|+.+...+|.+. .+|..+..|+.|+.|.|+.|++. .+|+++.-++.|+.||+..|+-.
T Consensus       313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            88899999999999988 89999999999999999999988 78999999999999999999754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-27  Score=223.15  Aligned_cols=276  Identities=19%  Similarity=0.148  Sum_probs=184.2

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC-CCCCCCCChhhhhcCCCccEE
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK-NFFQGNIPLEIGVYFPRLVYL  143 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~l~~L~~L  143 (623)
                      .-..++|..|.|+ .+|+..|+.+++|+.|+|++|.|+.+.|.+|.++++|.+|-+.+ |+|+ .+|...+..+..++.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            5677889999998 89999999999999999999999999999999999888777666 8888 8999988888899999


Q ss_pred             ecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc------------cccccccccCC
Q 038273          144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH------------GQLFYKKIYLR  211 (623)
Q Consensus       144 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~  211 (623)
                      .+.-|++.....++|..+++|..|.+.+|.+. .++...|..+.+++.+.+..|...            ...+..++...
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            99999998878888999999999999999998 888888888999999998887632            12233333333


Q ss_pred             CCCEEecccccCccccCccCcCC-CCCcEEECcCCcCccccc-hhccCCCCCCEEECccccccccccccccCCCCCcEEe
Q 038273          212 KLARLHLDANYCTGEIPKSLSNC-SPLEGLYMSDNNLYGNIP-AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD  289 (623)
Q Consensus       212 ~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  289 (623)
                      ......+.+.++..+.+..|... ..+..-..+.+...+..| ..|+++++|++|++++|+++.+.+.+|.+...+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            33333444444443333322211 111111112222222222 3456666666666666666666666666666666666


Q ss_pred             CcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccc
Q 038273          290 LSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL  367 (623)
Q Consensus       290 l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  367 (623)
                      +..|++.                        .+....|.++.+|+.|+|.+|+|+...|.+|..+..|.+|++-.|++
T Consensus       305 L~~N~l~------------------------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  305 LTRNKLE------------------------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cCcchHH------------------------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            6666554                        22223355555555555555555555555555555555555555544

>PLN03210 Resistant to P

Probab=99.92  E-value=9.9e-24  Score=241.84  Aligned_cols=340  Identities=21%  Similarity=0.227  Sum_probs=202.8

Q ss_pred             CCCCCCCCCEEEccCCCC------CCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchH
Q 038273          108 PIQPHWHLDTLHVSKNFF------QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEH  181 (623)
Q Consensus       108 ~~~~l~~L~~L~l~~n~l------~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  181 (623)
                      +|.++++|+.|.+..+..      ...+|..+....++|+.|++.++.++ .+|..| ...+|+.|++.+|.+. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            345555555555543321      11334444333334566666555554 344444 3455666666665555 45444


Q ss_pred             HhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCC
Q 038273          182 LVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSL  261 (623)
Q Consensus       182 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  261 (623)
                      + ..+++|+.|+++++......| .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus       630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            3 345566666665544333333 24455566666666554444555556666666666666554333444333 45666


Q ss_pred             CEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccc------cCCCCCccCCCceeE
Q 038273          262 NDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG------PLKYGTFFNRSSIVT  335 (623)
Q Consensus       262 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~~~~~L~~  335 (623)
                      +.|++++|......|.   ..++|+.|++++|.+. .+|....+++|++|.+.++....      ..+...+..+++|+.
T Consensus       707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            6666666544333332   1345666666666654 44444455666666665532110      011111334568888


Q ss_pred             EeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCC
Q 038273          336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA  415 (623)
Q Consensus       336 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~  415 (623)
                      |++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......|..                 
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------  844 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------  844 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence            9998887777788888888999999998886544666554 6888899999887654433321                 


Q ss_pred             CccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273          416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN  484 (623)
Q Consensus       416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  484 (623)
                              .++++.|++++|.++ .+|..+..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       845 --------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 --------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                    247888889888887 678888888889999988854333566677788888888888885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=5.6e-23  Score=235.67  Aligned_cols=342  Identities=20%  Similarity=0.234  Sum_probs=262.9

Q ss_pred             CChhhhhcCCCccEEecccCc------ccccCCcccCCCC-CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273          129 IPLEIGVYFPRLVYLNLSRND------FNGSIPSSIGDMN-SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       129 ~p~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      +....+..+++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+  ...+|++|++.++.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            344555668899999886553      2334667777764 5999999999987 888765  4789999999999876 


Q ss_pred             ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273          202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ  281 (623)
Q Consensus       202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  281 (623)
                      ..+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            4566778899999999998765445664 7788999999999987767888889999999999999976555666554 7


Q ss_pred             CCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCC-------CCCchhhhcc
Q 038273          282 LNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS-------GNIPYWIERL  354 (623)
Q Consensus       282 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l  354 (623)
                      +++|+.|++++|.....+|..  ..+|+.|++++|.+ ..+|..  ..+++|++|++.++...       ...+......
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc--ccccccccccccccchhhccccccccchhhhhcc
Confidence            889999999998765555543  46889999999987 345543  25678888888764321       1122223345


Q ss_pred             ccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccC
Q 038273          355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSC  434 (623)
Q Consensus       355 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  434 (623)
                      ++|+.|++++|.....+|..+.++++|+.|++++|...+.+|...                       .+++|+.|++++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------~L~sL~~L~Ls~  834 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----------------------NLESLESLDLSG  834 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------CccccCEEECCC
Confidence            789999999998777889999999999999999987555555432                       245899999999


Q ss_pred             CcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCc
Q 038273          435 NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN  508 (623)
Q Consensus       435 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~  508 (623)
                      |......|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       835 c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        835 CSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            8765555543   368999999999998 678889999999999999865544677788889999999999985

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=9.2e-27  Score=217.11  Aligned_cols=402  Identities=18%  Similarity=0.165  Sum_probs=254.1

Q ss_pred             CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccC-CcCCcccchHHhhCCCCCCEE
Q 038273          114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH-NQLTGEIPEHLVIGCFNLEYL  192 (623)
Q Consensus       114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L  192 (623)
                      .-..++|..|.|+ .+|...|..+++|+.|||++|+|+.+.|++|.++.+|..|-+.+ |+|+ .+|...|.++..|+.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            5567899999999 99999999999999999999999999999999999998887777 8998 9999999999999999


Q ss_pred             EcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCcc------------ccchhccCCCC
Q 038273          193 VLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG------------NIPAWLGNLSS  260 (623)
Q Consensus       193 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~  260 (623)
                      .+.-|.+.......|..+++|..|.+..|.+..+-..+|..+..++.+.+..|....            ..|-.++...-
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            999999998888999999999999999999886666689999999999988886321            11222222222


Q ss_pred             CCEEECccccccccccccccC-CCCCcEEeCcCccceeeCCCCC--CCCcccEEEccCccccccCCCCCccCCCceeEEe
Q 038273          261 LNDIMMAINHLQGPIPLEFCQ-LNYLEILDLSENNISGTLPSCS--SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLD  337 (623)
Q Consensus       261 L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  337 (623)
                      .....+.+.++..+.+..|.. +.++..--.+.+...+..|...  .+++|+++++++|++++ +...+|.....+++|.
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELY  304 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhh
Confidence            233333333333333332221 1111111112222322333221  56777777888877743 4444577777777777


Q ss_pred             CCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCc
Q 038273          338 LSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPT  417 (623)
Q Consensus       338 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~  417 (623)
                      |..|++..+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++-..-.-.+-...++...      ...
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~------~~~  378 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS------VVG  378 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC------CCC
Confidence            77777776666677777778888888888777777777777777777777776532111000000000000      000


Q ss_pred             cccCCCCCCccEEEccCCcccc---cCCcc---------ccccccCCe-eeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273          418 RYKGKPLNKMYGVDLSCNKLTG---EIPPQ---------IGKLTSIRA-LNFSHNNLTGVIPVSFSNLKQVESLDVSYNN  484 (623)
Q Consensus       418 ~~~~~~~~~L~~L~L~~n~l~~---~~~~~---------l~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  484 (623)
                      .-.-+.+..++.+++++..+.+   ..|++         -..++.+.+ ...|+..+. .+|..+.  ..-.+|++.+|.
T Consensus       379 ~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~  455 (498)
T KOG4237|consen  379 NPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNA  455 (498)
T ss_pred             CCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccch
Confidence            0111122344445554443321   11111         122233332 233333343 4443332  245677777777


Q ss_pred             ccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCC
Q 038273          485 LNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN  531 (623)
Q Consensus       485 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~N  531 (623)
                      +. .+|+.  .+.+| .+|+++|+++...-..|.+++.+..+.++.|
T Consensus       456 ~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  456 IT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            77 45554  45566 7778888777666666666666666666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=4.3e-20  Score=196.55  Aligned_cols=192  Identities=27%  Similarity=0.312  Sum_probs=81.9

Q ss_pred             CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcC
Q 038273          165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD  244 (623)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  244 (623)
                      ..|+++++.++ .+|..+.   .+|+.|++.+|.++. +|.   ..++|++|++++|+++. +|..   .++|+.|++++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            34444444444 4444331   244444554444442 111   12445555555554442 2221   23455555555


Q ss_pred             CcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC
Q 038273          245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY  324 (623)
Q Consensus       245 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  324 (623)
                      |.+.. +|..   .++|+.|++++|+++.. |.   ..++|+.|++++|.+.+ +|.  ....|+.|++++|.+.+ +|.
T Consensus       272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~--lp~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        272 NPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             Cchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCC--CcccccccccccCcccc-ccc
Confidence            55442 2221   13445555555555422 21   12445555555555542 222  12234444444444422 221


Q ss_pred             CCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCc
Q 038273          325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF  392 (623)
Q Consensus       325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  392 (623)
                      .    ..+|+.|++++|++++ +|..   .++|+.|++++|.+.. +|..   .++|+.|++++|++.
T Consensus       340 l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        340 L----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT  395 (788)
T ss_pred             c----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence            1    1345555555555553 2221   1345555555555542 3321   134555555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=8.9e-20  Score=194.12  Aligned_cols=264  Identities=28%  Similarity=0.311  Sum_probs=136.4

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN  144 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~  144 (623)
                      .-..|+++++.++ .+|..+.   ++|+.|++.+|+++.. |.   ..++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3455666666666 5665442   3566666666666542 22   1356666666666666 45531    34566666


Q ss_pred             cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273          145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +++|.++ .+|..+   .+|+.|++++|+++ .+|.    .+++|+.|++++|.+.+. |..   ..+|+.|++++|.++
T Consensus       269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        269 IFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             ccCCchh-hhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCccc
Confidence            6666655 233322   34556666666665 4543    134566666666655532 211   123455555555554


Q ss_pred             cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCC
Q 038273          225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS  304 (623)
Q Consensus       225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  304 (623)
                      + +|..   ..+|+.|++++|+++. +|..   ..+|+.|++++|.+..                         +|..  
T Consensus       336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-------------------------LP~l--  380 (788)
T PRK15387        336 S-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-------------------------LPAL--  380 (788)
T ss_pred             c-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-------------------------Cccc--
Confidence            2 2221   1345555555555542 2221   1234444455544442                         2221  


Q ss_pred             CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEE
Q 038273          305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI  384 (623)
Q Consensus       305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  384 (623)
                      ..+|+.|++++|.+.+ +|..    .++|+.|++++|+++. +|...   .+|+.|++++|+++ .+|..+..+++|+.|
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L  450 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV  450 (788)
T ss_pred             ccccceEEecCCcccC-CCCc----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence            1234444555444432 2221    2456666666666663 34322   35666777777776 556666777777777


Q ss_pred             EccCCcCcCCCCCcc
Q 038273          385 DLSNNNLFGQIPGCL  399 (623)
Q Consensus       385 ~l~~n~l~~~~~~~~  399 (623)
                      ++++|++++..+..+
T Consensus       451 dLs~N~Ls~~~~~~L  465 (788)
T PRK15387        451 NLEGNPLSERTLQAL  465 (788)
T ss_pred             ECCCCCCCchHHHHH
Confidence            777777766655544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=3.9e-18  Score=182.98  Aligned_cols=244  Identities=22%  Similarity=0.333  Sum_probs=111.1

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      +...|++++++++. +|..+.  ++|+.|++++|.++ .+|..++   .+|++|++++|++++. |..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence            34445555544442 333221  24555555555554 4444331   3455555555554432 22221  24555555


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .+|..+.   .+|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+   ..+|+.|++++|.+.
T Consensus       249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT  317 (754)
T ss_pred             cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc
Confidence            555554 4454433   24555555555554 2343332  34555555555554 444332   124555555555554


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                      .. |..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.+.. +|..+.
T Consensus       318 ~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~  387 (754)
T PRK15370        318 AL-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP  387 (754)
T ss_pred             cC-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH
Confidence            32 2211  1345555555555543 333332  45555555555554 2333332  455555555555552 232222


Q ss_pred             CCCCCcEEeCcCccceeeCCCCC-----CCCcccEEEccCccc
Q 038273          281 QLNYLEILDLSENNISGTLPSCS-----SHSTIQQVHLSKNML  318 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~L~l~~n~l  318 (623)
                        ..|+.|++++|++. .+|...     ..+.+..+++.+|.+
T Consensus       388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence              24555556665554 222211     234555666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=2.5e-18  Score=184.45  Aligned_cols=248  Identities=25%  Similarity=0.358  Sum_probs=179.3

Q ss_pred             CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEE
Q 038273           64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYL  143 (623)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L  143 (623)
                      .+...|+++++.++ .+|..+   .++|+.|++++|+++.. |..+.  ++|++|++++|.++ .+|..+.   ++|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence            45678888888888 678654   35788999999888764 43332  58899999998888 7887654   378899


Q ss_pred             ecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccC
Q 038273          144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYC  223 (623)
Q Consensus       144 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  223 (623)
                      ++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+   .++|+.|++++|.++. +|..+  .++|+.|++++|.+
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~L  316 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSL  316 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcc
Confidence            99999888 5666553  57889999998888 777755   3578899999888875 33333  24688888888888


Q ss_pred             ccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC
Q 038273          224 TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS  303 (623)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  303 (623)
                      +. +|..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|.+. .+|...
T Consensus       317 t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l  386 (754)
T PRK15370        317 TA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENL  386 (754)
T ss_pred             cc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhH
Confidence            74 44433  2678888998888874 555443  68889999998887 345444  358889999998887 344322


Q ss_pred             CCCcccEEEccCccccccCCCC---CccCCCceeEEeCCCCcCC
Q 038273          304 SHSTIQQVHLSKNMLYGPLKYG---TFFNRSSIVTLDLSYNSFS  344 (623)
Q Consensus       304 ~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~  344 (623)
                       ...|+.|++++|++. .+|..   .....+.+..+++.+|+++
T Consensus       387 -~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 -PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             246888888888885 44432   1233477888899888887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=3.4e-19  Score=178.24  Aligned_cols=61  Identities=13%  Similarity=0.180  Sum_probs=32.1

Q ss_pred             CCCcEEECCCCccc----ccCccccccCCCCCeeecccCccccc----CCCCcccc-CCCCCccccCCCC
Q 038273          473 KQVESLDVSYNNLN----GKIPPQLVELNVLAVFSVAHNNLSGK----IPEWTAQF-TTFKEDSYEGNPL  533 (623)
Q Consensus       473 ~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~~-~~l~~l~l~~Np~  533 (623)
                      +.|++|++++|.++    ..+...+..+++|+++++++|.++..    ....+... +.++++++.+|||
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            45666666666554    11223344445666666666666532    22223333 4566677777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=3.8e-18  Score=170.69  Aligned_cols=277  Identities=22%  Similarity=0.233  Sum_probs=138.0

Q ss_pred             EEEccCCcCc-CcCCCCCCCCCCCCEEEccCCCCCCC----CChhhhhcCCCccEEecccCcccc------cCCcccCCC
Q 038273           93 TLVLRNNSLS-GPFRMPIQPHWHLDTLHVSKNFFQGN----IPLEIGVYFPRLVYLNLSRNDFNG------SIPSSIGDM  161 (623)
Q Consensus        93 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l  161 (623)
                      .|+|..+.++ ......+..+.+|++|+++++.+++.    ++..+. ..+++++++++++.+..      ..+..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3556666655 22233345556677777777776422    222222 24557777777766541      223345556


Q ss_pred             CCCCEEEccCCcCCcccchHHhhCCCC---CCEEEcccCcCcc----ccccccccC-CCCCEEecccccCccc----cCc
Q 038273          162 NSLKFLDLSHNQLTGEIPEHLVIGCFN---LEYLVLSENSLHG----QLFYKKIYL-RKLARLHLDANYCTGE----IPK  229 (623)
Q Consensus       162 ~~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~  229 (623)
                      ++|+.|++++|.+.+..+. .+..+.+   |++|++++|.+..    .....+..+ ++|+.|++++|.+++.    ...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            6777777777666532222 2222333   6666666666542    111223334 5556666666655521    122


Q ss_pred             cCcCCCCCcEEECcCCcCccc----cchhccCCCCCCEEECccccccccc----cccccCCCCCcEEeCcCccceeeCCC
Q 038273          230 SLSNCSPLEGLYMSDNNLYGN----IPAWLGNLSSLNDIMMAINHLQGPI----PLEFCQLNYLEILDLSENNISGTLPS  301 (623)
Q Consensus       230 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~  301 (623)
                      .+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+..    ...+..+++|+.|++++|.+......
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            334445555555555555421    1222333445555555555543221    12233444455555555443310000


Q ss_pred             CCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC----CchhhhccccCcEEEccccccccc----Cch
Q 038273          302 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN----IPYWIERLTRLRYLILANNNLEGE----VPN  373 (623)
Q Consensus       302 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~  373 (623)
                                         .+........+.|+.|++++|.+++.    ....+..+++|+.+++++|.+...    ...
T Consensus       240 -------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         240 -------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             -------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence                               00000011235677777777777532    223445556778888888877643    233


Q ss_pred             hhcCC-CCCCEEEccCCc
Q 038273          374 QLCRL-KQLRLIDLSNNN  390 (623)
Q Consensus       374 ~~~~l-~~L~~L~l~~n~  390 (623)
                      .+... +.|+.+++.+|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         301 SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhhcCCchhhcccCCCC
Confidence            34444 677777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.5e-18  Score=142.55  Aligned_cols=181  Identities=28%  Similarity=0.449  Sum_probs=135.0

Q ss_pred             ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273          327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  406 (623)
Q Consensus       327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  406 (623)
                      +..+..++.|.+++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|.+. ..|..|+.     
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-----  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-----  100 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence            334456666777777777 45556777777777777777777 56667777777777777766664 44444433     


Q ss_pred             CCCCCCCCCCccccCCCCCCccEEEccCCcccc-cCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcc
Q 038273          407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL  485 (623)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  485 (623)
                                       +|.|+.||+.+|++.. ..|..|..++.|+.|.+++|.+. .+|...+.+++|+.|.+.+|.+
T Consensus       101 -----------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  101 -----------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             -----------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence                             4577777777777753 57888999999999999999998 8888899999999999999999


Q ss_pred             cccCccccccCCCCCeeecccCcccccCCCCccccCC---CCCccccCCCCCC
Q 038273          486 NGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTT---FKEDSYEGNPLLC  535 (623)
Q Consensus       486 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l~~l~l~~Np~~C  535 (623)
                      . .+|..++.++.|+.|.+.+|+++...|+ ++++.-   -....+..|||.-
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            8 7889999999999999999999976664 333321   2334556666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3.9e-17  Score=135.53  Aligned_cols=157  Identities=22%  Similarity=0.328  Sum_probs=136.5

Q ss_pred             CCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCC
Q 038273           37 TPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD  116 (623)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  116 (623)
                      +...+++.|.++.|+++ .+|..+.++.+|+.|++++|++. .+|..+ +.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhh
Confidence            44448899999999997 56777999999999999999998 889887 89999999999999874 4788999999999


Q ss_pred             EEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273          117 TLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS  195 (623)
Q Consensus       117 ~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  195 (623)
                      .||++.|.+.. .+|-.++. +..|+.|.+++|.+. .+|..++++++|+.|.++.|.+. ++|..+ +.+..|++|++.
T Consensus       106 vldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiq  181 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQ  181 (264)
T ss_pred             hhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhcc
Confidence            99999998874 56777766 678999999999998 78899999999999999999998 899888 578899999999


Q ss_pred             cCcCcc
Q 038273          196 ENSLHG  201 (623)
Q Consensus       196 ~n~l~~  201 (623)
                      +|+++.
T Consensus       182 gnrl~v  187 (264)
T KOG0617|consen  182 GNRLTV  187 (264)
T ss_pred             cceeee
Confidence            988863

>PLN03150 hypothetical protein; Provisional

Probab=99.49  E-value=8.2e-14  Score=149.47  Aligned_cols=118  Identities=34%  Similarity=0.572  Sum_probs=107.5

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCcccc-CCCCCccccCCCCCCCCCC-CCCC
Q 038273          506 HNNLSGKIPEWTAQF-TTFKEDSYEGNPLLCGKPL-PDCD  543 (623)
Q Consensus       506 ~N~l~~~~~~~~~~~-~~l~~l~l~~Np~~C~~~l-~~C~  543 (623)
                      +|++++.+|..+... ..+..+++.+|+.+|+.+. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999877553 4567889999999998653 3464

>PLN03150 hypothetical protein; Provisional

Probab=99.15  E-value=1.6e-10  Score=124.39  Aligned_cols=113  Identities=31%  Similarity=0.507  Sum_probs=100.7

Q ss_pred             CCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCC
Q 038273          380 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN  459 (623)
Q Consensus       380 ~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  459 (623)
                      .++.|++++|.+.+.+|..+..+                      ++|+.|+|++|.+.+.+|..+..+++|+.|+|++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L----------------------~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N  476 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL----------------------RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN  476 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC----------------------CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC
Confidence            37889999999999888877654                      49999999999999999999999999999999999


Q ss_pred             cccccCCccCCCCCCCcEEECCCCcccccCccccccC-CCCCeeecccCcccccCC
Q 038273          460 NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       460 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~~  514 (623)
                      .+++.+|+.+.++++|+.|+|++|++++.+|..+... ..+..+++.+|...+..|
T Consensus       477 ~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999999999999999999988764 467889999998655444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.2e-11  Score=118.47  Aligned_cols=212  Identities=21%  Similarity=0.140  Sum_probs=128.1

Q ss_pred             cccEEEccCCCCCCCCC--cccCCCCCCcEEEccCCCCCCc-CChHHhhCCCCCCEEEccCCcCcCcCCC-CCCCCCCCC
Q 038273           41 QLESVKLSGSGIHATFP--KFLYNQHDLEYVDFSDSNLKGE-FPNWLLENNTNLNTLVLRNNSLSGPFRM-PIQPHWHLD  116 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~  116 (623)
                      +|+++.|+++.+. ..+  .....|++++.||+|+|-+..- .-..+...+|+|+.|+++.|++...... .-..+++|+
T Consensus       122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            7888889888765 323  4667889999999998876521 1224457889999999999987532211 122467888


Q ss_pred             EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccch-HHhhCCCCCCEEEcc
Q 038273          117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE-HLVIGCFNLEYLVLS  195 (623)
Q Consensus       117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~  195 (623)
                      .|.++.|.++-.--..+...+|+|+.|+|.+|............++.|+.|||++|.+. ..+. .....++.|+.|+++
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcc
Confidence            88888888874333444555788888888888533344444556777888888888776 4442 122456677777777


Q ss_pred             cCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc-cchhccCCCCCCEEECcccccc
Q 038273          196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN-IPAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       196 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      .+++.........                  .-+-...+++|++|++..|++.+. .-..+..+++|+.|.+..|.+.
T Consensus       280 ~tgi~si~~~d~~------------------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVE------------------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCcc------------------chhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            6666542211110                  000123345566666666655321 1123344455555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=9.4e-12  Score=119.18  Aligned_cols=186  Identities=22%  Similarity=0.173  Sum_probs=118.3

Q ss_pred             hCCCCCCEEEccCCcCcCcCC-CCCCCCCCCCEEEccCCCCCCC-CChhhhhcCCCccEEecccCcccccCCcc-cCCCC
Q 038273           86 ENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLHVSKNFFQGN-IPLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGDMN  162 (623)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~  162 (623)
                      +++.+|+...|.++.+..... .....+++++.|||++|-+..- .-..+...+|+|+.|+++.|.+....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            466788888888887643211 3566788888888888876521 12245566888999999888876322221 23577


Q ss_pred             CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCcccc-CccCcCCCCCcEEE
Q 038273          163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEI-PKSLSNCSPLEGLY  241 (623)
Q Consensus       163 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~  241 (623)
                      +|+.|.++.|.++..--..+...+|+|+.|++.+|............+..|++|+|++|++.... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            88888888888874333344457888888888888643344444555677888888888766322 13356777788887


Q ss_pred             CcCCcCcccc-chh-----ccCCCCCCEEECccccc
Q 038273          242 MSDNNLYGNI-PAW-----LGNLSSLNDIMMAINHL  271 (623)
Q Consensus       242 L~~n~l~~~~-~~~-----l~~l~~L~~L~l~~n~~  271 (623)
                      ++.+.+...- |+.     ...+++|+.|++..|++
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            7777765431 111     13345555555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=1.9e-12  Score=127.72  Aligned_cols=174  Identities=30%  Similarity=0.452  Sum_probs=121.3

Q ss_pred             CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273          306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID  385 (623)
Q Consensus       306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  385 (623)
                      .--...+++.|++ ..+|.. +..+..|+.+.+..|.+. .+|..+..+..|+.++|+.|++. ..|..++.+| |+.|-
T Consensus        75 tdt~~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             cchhhhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            3344556666666 445544 555566777777777776 56667777777777777777776 5666666666 67777


Q ss_pred             ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273          386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI  465 (623)
Q Consensus       386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  465 (623)
                      +++|+++ .+|..++.                      .+.|..||.+.|.+. .+|..+..+.+|+.|++..|++. ..
T Consensus       150 ~sNNkl~-~lp~~ig~----------------------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l  204 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGL----------------------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL  204 (722)
T ss_pred             EecCccc-cCCccccc----------------------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence            7777765 33433332                      347777888888887 66777888888888888888887 34


Q ss_pred             CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273          466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG  511 (623)
Q Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  511 (623)
                      |..+..++ |..||+|+|+++ .+|..|.++..|++|-|.+|++..
T Consensus       205 p~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  205 PEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             CHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            55555555 778888888888 778888888888888888888864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=1.1e-11  Score=112.71  Aligned_cols=86  Identities=24%  Similarity=0.310  Sum_probs=51.9

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccC-ccccccCCCCCeeec
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI-PPQLVELNVLAVFSV  504 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l  504 (623)
                      +|+.||+|+|.++ .+..+=..+.+.+.|.|++|.+.+.  ..+..+-+|..||+++|+|.... -..++++|-|+.+.+
T Consensus       330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            4555555555554 2223334455677777777776533  45566667777777777776332 235667777777778


Q ss_pred             ccCcccccCC
Q 038273          505 AHNNLSGKIP  514 (623)
Q Consensus       505 ~~N~l~~~~~  514 (623)
                      .+|++.+...
T Consensus       407 ~~NPl~~~vd  416 (490)
T KOG1259|consen  407 TGNPLAGSVD  416 (490)
T ss_pred             cCCCccccch
Confidence            8887775433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=9.9e-11  Score=102.59  Aligned_cols=129  Identities=21%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273           61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL  140 (623)
Q Consensus        61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  140 (623)
                      .+..++++|+|++|.|+ .+. .+-..+.+|+.|++++|.|+..  +.+..+++|++|++++|+++ .+...+...+|+|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            34456777777777776 443 2212466777777777777653  34666778888888888887 5655554447788


Q ss_pred             cEEecccCcccccC-CcccCCCCCCCEEEccCCcCCcccc---hHHhhCCCCCCEEEcc
Q 038273          141 VYLNLSRNDFNGSI-PSSIGDMNSLKFLDLSHNQLTGEIP---EHLVIGCFNLEYLVLS  195 (623)
Q Consensus       141 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~  195 (623)
                      ++|++++|+|.... -..++.+++|++|++.+|+++ .-+   ..++..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence            88888888876422 234667888888888888877 333   2344567777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=7.5e-12  Score=116.61  Aligned_cols=243  Identities=23%  Similarity=0.205  Sum_probs=139.7

Q ss_pred             cccEEEccCCCCCCC----CCcccCCCCCCcEEEccCCC---CCCcCChHH------hhCCCCCCEEEccCCcCcCcCCC
Q 038273           41 QLESVKLSGSGIHAT----FPKFLYNQHDLEYVDFSDSN---LKGEFPNWL------LENNTNLNTLVLRNNSLSGPFRM  107 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~------~~~l~~L~~L~L~~n~i~~~~~~  107 (623)
                      .++++++++|.+...    +...+.+.++|+..++|+-.   ....+|+.+      +..+++|++|+||.|-+....+.
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            677888888877543    33445666778888877532   122344322      23445666666666655322221


Q ss_pred             C----CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccc----
Q 038273          108 P----IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIP----  179 (623)
Q Consensus       108 ~----~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  179 (623)
                      .    +.++..|++|.+.+|.+.-..-..++.   -|..|.         .....+.-+.|+++...+|++. .-+    
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~  177 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLE-NGGATAL  177 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccc-cccHHHH
Confidence            1    233455555555555443100001111   111111         0112333456777777777665 332    


Q ss_pred             hHHhhCCCCCCEEEcccCcCcc----ccccccccCCCCCEEecccccCcc----ccCccCcCCCCCcEEECcCCcCcccc
Q 038273          180 EHLVIGCFNLEYLVLSENSLHG----QLFYKKIYLRKLARLHLDANYCTG----EIPKSLSNCSPLEGLYMSDNNLYGNI  251 (623)
Q Consensus       180 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~  251 (623)
                      ...|...+.|+.+.+..|.|..    .....+..+++|+.||+..|-++.    .+.+.++.+++|+.|++++|.+....
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            2344556777777777776653    233556677888888888876653    23456777888888888888876544


Q ss_pred             chhc-----cCCCCCCEEECcccccccc----ccccccCCCCCcEEeCcCccce
Q 038273          252 PAWL-----GNLSSLNDIMMAINHLQGP----IPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       252 ~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      ...+     ...++|+.+.+.+|.++..    +.......+.|..|++++|++.
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            4333     2367888888888887632    2223445788999999999883

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.3e-10  Score=119.62  Aligned_cols=155  Identities=31%  Similarity=0.474  Sum_probs=87.6

Q ss_pred             ceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCC
Q 038273          332 SIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDND  411 (623)
Q Consensus       332 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~  411 (623)
                      +|+.|++++|++. .+|..+..+++|+.|++++|++. .++......+.|+.|++++|++....+. ..           
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~-----------  206 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IE-----------  206 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchh-hh-----------
Confidence            4555555555555 33344555566666666666665 3333333555666666666665422221 10           


Q ss_pred             CCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcc
Q 038273          412 GSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP  491 (623)
Q Consensus       412 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  491 (623)
                                 .+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..+++++.|++++|+++...+ 
T Consensus       207 -----------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         207 -----------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             -----------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc-
Confidence                       1124666666666433 44555666666676777777665 235566666667777777777764322 


Q ss_pred             ccccCCCCCeeecccCcccccCCC
Q 038273          492 QLVELNVLAVFSVAHNNLSGKIPE  515 (623)
Q Consensus       492 ~~~~l~~L~~L~l~~N~l~~~~~~  515 (623)
                       +..+.+++.|++++|.++...|.
T Consensus       273 -~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         273 -LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -ccccCccCEEeccCccccccchh
Confidence             56667777777777766655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=9e-11  Score=102.85  Aligned_cols=108  Identities=30%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY  191 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  191 (623)
                      ..++++|+|++|.++ .+ +.+...+.+|+.|++++|.++..  ..+..+++|+.|++++|.++ .+.+.+...+++|++
T Consensus        18 ~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            334566666666555 33 23333345677777777776632  23666777777777777776 665544345677777


Q ss_pred             EEcccCcCcccc-ccccccCCCCCEEecccccCc
Q 038273          192 LVLSENSLHGQL-FYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       192 L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      |++++|.+.... ...+..+++|+.|++.+|.+.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777765421 123334444444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=2.4e-10  Score=117.58  Aligned_cols=200  Identities=26%  Similarity=0.325  Sum_probs=133.6

Q ss_pred             EEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCC-CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273           44 SVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNT-NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK  122 (623)
Q Consensus        44 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  122 (623)
                      .+++..+.+... ...+...+.++.|++.+|.++ .++... .... +|+.|++++|++.. ++..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence            466666665322 233445577788888887777 666554 3443 78888888887754 335567778888888888


Q ss_pred             CCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccc
Q 038273          123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ  202 (623)
Q Consensus       123 n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  202 (623)
                      |.+. .+|..... .+.|+.|++++|+++ .+|.......+|+++.+++|++. ..+..+ ..+.++..+.+.+|.+...
T Consensus       173 N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~-~~~~~l~~l~l~~n~~~~~  247 (394)
T COG4886         173 NDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL-SNLKNLSGLELSNNKLEDL  247 (394)
T ss_pred             chhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhh-hhcccccccccCCceeeec
Confidence            8877 66665533 467888888888877 45555556666888888887544 444444 4577777777777766532


Q ss_pred             cccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhc
Q 038273          203 LFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL  255 (623)
Q Consensus       203 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  255 (623)
                       +..+..+++++.|++++|.++...+  ++.+.+++.|+++++.+....+...
T Consensus       248 -~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         248 -PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             -cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence             4556667778888888888774433  7777888888888887765554433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=6.6e-12  Score=123.99  Aligned_cols=172  Identities=30%  Similarity=0.442  Sum_probs=138.8

Q ss_pred             CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEE
Q 038273          114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLV  193 (623)
Q Consensus       114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  193 (623)
                      --...|++.|++. ++|..+.. +-.|+.+.|..|.+. .+|.++.++..|.+++++.|+++ .+|..++  .--|+.|.
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli  149 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLI  149 (722)
T ss_pred             chhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEE
Confidence            3446788888888 88888776 558888888888888 68888889999999999999988 8888885  34588888


Q ss_pred             cccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccc
Q 038273          194 LSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG  273 (623)
Q Consensus       194 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  273 (623)
                      +++|+++ .+|..+...++|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+.. -.|..||++.|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence            8888886 56677777888888999988887 56677888888888888888887 45555664 45788899988888 


Q ss_pred             cccccccCCCCCcEEeCcCccce
Q 038273          274 PIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       274 ~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      .+|..|..++.|++|.|.+|.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC
Confidence            67888888889999999888876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=3.6e-11  Score=112.13  Aligned_cols=134  Identities=20%  Similarity=0.248  Sum_probs=102.7

Q ss_pred             CCCCCCEEEcccCcCcccc----ccccccCCCCCEEecccccCccc----cCccCcCCCCCcEEECcCCcCccc----cc
Q 038273          185 GCFNLEYLVLSENSLHGQL----FYKKIYLRKLARLHLDANYCTGE----IPKSLSNCSPLEGLYMSDNNLYGN----IP  252 (623)
Q Consensus       185 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~  252 (623)
                      .-+.|+++..++|++....    ...++..+.|+.+.++.|.+...    ....+..+++|++|||.+|-++..    ..
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            4678999999999986533    34566788999999999987532    235678999999999999987643    34


Q ss_pred             hhccCCCCCCEEECccccccccccccc-----cCCCCCcEEeCcCccceeeCC-----CCCCCCcccEEEccCccc
Q 038273          253 AWLGNLSSLNDIMMAINHLQGPIPLEF-----CQLNYLEILDLSENNISGTLP-----SCSSHSTIQQVHLSKNML  318 (623)
Q Consensus       253 ~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l  318 (623)
                      ..+..+++|+.|++++|.+......++     ...++|+++.+.+|.++..-.     .....+.|..|++++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            556778999999999999875544333     347899999999998863211     111478899999999998

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=3.6e-11  Score=109.51  Aligned_cols=105  Identities=19%  Similarity=0.265  Sum_probs=81.5

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      .++.|++|+|.+. .+ +.++.+++|+.||||+|.++ ....+-..+.+.++|.|+.|.+...  ..++.+-+|..||++
T Consensus       308 kir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  308 KLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLS  382 (490)
T ss_pred             ceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccc
Confidence            4444444444444 22 34788999999999999998 4555666788999999999998743  567889999999999


Q ss_pred             cCcccccCC-CCccccCCCCCccccCCCCCC
Q 038273          506 HNNLSGKIP-EWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       506 ~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      +|++..... ..++.+|.|+.+.+.+||..-
T Consensus       383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999876433 457789999999999999865

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=4e-10  Score=123.77  Aligned_cols=128  Identities=23%  Similarity=0.288  Sum_probs=96.8

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCC--CCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEE
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSN--LKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL  118 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  118 (623)
                      ..++..+.++.+. .++.. ..++.|++|-+.+|.  +. .++..+|..++.|++|||++|.--+.+|..++.+-+||+|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            5777777777764 22332 244578888888875  44 6777778888888888888876666788888888888888


Q ss_pred             EccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCc
Q 038273          119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ  173 (623)
Q Consensus       119 ~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  173 (623)
                      +++++.+. .+|..+.+ +..|.+|++..+.....+|.....+++|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            88888888 88888887 6688888888877655566666778888888887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=5.7e-10  Score=80.26  Aligned_cols=60  Identities=40%  Similarity=0.598  Sum_probs=34.5

Q ss_pred             cCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcc
Q 038273          450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL  509 (623)
Q Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l  509 (623)
                      +|++|++++|.++.+.++.|.++++|++|++++|++....|+.|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555555555555556666666666665555555555556666666655543

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=7e-10  Score=121.85  Aligned_cols=128  Identities=23%  Similarity=0.343  Sum_probs=66.4

Q ss_pred             CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCc--CcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273           64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS--LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV  141 (623)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  141 (623)
                      ...+...+-+|.+. .++..  ..+++|++|-+..|.  +.......|..++.|++||+++|.--+++|..++. +-+|+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR  598 (889)
T ss_pred             hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence            44555555555544 33332  234456666665554  33333334555666666666655443456666655 33666


Q ss_pred             EEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccC
Q 038273          142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN  197 (623)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  197 (623)
                      +|+++++.+. .+|..+.++..|.+|++..+.-...+ ..+...+.+|++|.+...
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            6666666655 45555666666666666555443222 333334555666555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=9.7e-10  Score=79.05  Aligned_cols=61  Identities=43%  Similarity=0.599  Sum_probs=57.6

Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcc
Q 038273          425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL  485 (623)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  485 (623)
                      |+|++|++++|+++...+..|..+++|++|++++|.++.+.++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4799999999999988778999999999999999999999999999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=5.7e-10  Score=114.87  Aligned_cols=247  Identities=23%  Similarity=0.252  Sum_probs=149.1

Q ss_pred             cCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEE
Q 038273          232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQV  311 (623)
Q Consensus       232 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  311 (623)
                      ..+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|++|++++|.|+ .+.....++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccc-cccchhhccchhhh
Confidence            355667777777777763 23346677888888888888874432 2566788888888888887 55555556667777


Q ss_pred             EccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCc
Q 038273          312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNN  390 (623)
Q Consensus       312 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  390 (623)
                      ++.+|.+...-.   +..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.
T Consensus       146 ~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLISDISG---LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             eeccCcchhccC---CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence            777777743221   4446777777777777775443 2 45666777777777776522  223333344444666666


Q ss_pred             CcCCCCCccccccccCCCCCCCCCCCccccCCCCC--CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCcc
Q 038273          391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN--KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS  468 (623)
Q Consensus       391 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  468 (623)
                      +...-+-.                        ...  .|+.+++++|.+. ..+..+..+..+..|++.+|.+...  ..
T Consensus       220 i~~~~~l~------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~  272 (414)
T KOG0531|consen  220 ISKLEGLN------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EG  272 (414)
T ss_pred             ceeccCcc------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cc
Confidence            54221100                        011  2667777777776 3334556667777777777776643  33


Q ss_pred             CCCCCCCcEEECCCCccccc---Cccc-cccCCCCCeeecccCcccccCC
Q 038273          469 FSNLKQVESLDVSYNNLNGK---IPPQ-LVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       469 ~~~l~~L~~L~Ls~n~l~~~---~p~~-~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      +...+.+..+....|++...   .... ....+.++..++..|+.....+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            45566666677777766521   1111 3445666677777776665444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=8.3e-10  Score=113.66  Aligned_cols=247  Identities=24%  Similarity=0.226  Sum_probs=155.0

Q ss_pred             cCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEE
Q 038273          209 YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL  288 (623)
Q Consensus       209 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  288 (623)
                      .+..++.+++..|.+.. .-..+..+++|+.|++.+|.+.... ..+..+++|++|++++|.+..+.  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhh
Confidence            45566666777777664 2233667788888888888876432 22667788888888888887543  34566668888


Q ss_pred             eCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccccc
Q 038273          289 DLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE  368 (623)
Q Consensus       289 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  368 (623)
                      ++++|.+. .+.....+..|+.+++++|.+...-... ...+.+++.+++.+|.+...  .++..+..+..+++..|.+.
T Consensus       146 ~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  146 NLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eeccCcch-hccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence            88888876 5555555778888888888774332211 24567778888888877633  33444455566677777776


Q ss_pred             ccCchhhcCCCC--CCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccc
Q 038273          369 GEVPNQLCRLKQ--LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG  446 (623)
Q Consensus       369 ~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  446 (623)
                      ...+  +..+..  |+.+++++|++.... ..                      ...+..+..+++.+|.+...  ..+.
T Consensus       222 ~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~----------------------~~~~~~l~~l~~~~n~~~~~--~~~~  274 (414)
T KOG0531|consen  222 KLEG--LNELVMLHLRELYLSGNRISRSP-EG----------------------LENLKNLPVLDLSSNRISNL--EGLE  274 (414)
T ss_pred             eccC--cccchhHHHHHHhcccCcccccc-cc----------------------ccccccccccchhhcccccc--cccc
Confidence            3321  222232  778888888775321 00                      11244677778887777633  2345


Q ss_pred             ccccCCeeeCCCCccccc---CCc-cCCCCCCCcEEECCCCcccccCc
Q 038273          447 KLTSIRALNFSHNNLTGV---IPV-SFSNLKQVESLDVSYNNLNGKIP  490 (623)
Q Consensus       447 ~l~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~Ls~n~l~~~~p  490 (623)
                      ..+.+..+....|.+...   ... .....+.++...+..|.+....+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            556666777777765421   111 14556778888888887775444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.1e-10  Score=103.48  Aligned_cols=224  Identities=21%  Similarity=0.163  Sum_probs=133.8

Q ss_pred             cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCC-CCcccCCC-CCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273           17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHAT-FPKFLYNQ-HDLEYVDFSDSNLKGEFPNWLLENNTNLNTL   94 (623)
Q Consensus        17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (623)
                      +.+|+.+-++.-+...   .+....+..+.+........ +.+.+.-+ +.|++||||...++..--..+++.|.+|+.|
T Consensus       139 ~~lDl~~r~i~p~~l~---~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l  215 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLG---RLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL  215 (419)
T ss_pred             eeeccCCCccChhHHH---HHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence            4567766655422111   12222455555543322211 22222222 3599999998888754445667888999999


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCCC-CCCCCChhhhhcCCCccEEecccCcccccCCcc-cCC-CCCCCEEEccC
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGD-MNSLKFLDLSH  171 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~-l~~L~~L~l~~  171 (623)
                      .+.++++.+.+...+++-.+|+.|+++.+. ++......++..+++|..|+++.|......-.. ++. -+.|+.|++++
T Consensus       216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG  295 (419)
T KOG2120|consen  216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG  295 (419)
T ss_pred             cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence            999999887777778888999999998865 443334456666888999999998765332221 111 25677788877


Q ss_pred             CcCC--cccchHHhhCCCCCCEEEcccCc-CccccccccccCCCCCEEecccccCccccCcc---CcCCCCCcEEECcCC
Q 038273          172 NQLT--GEIPEHLVIGCFNLEYLVLSENS-LHGQLFYKKIYLRKLARLHLDANYCTGEIPKS---LSNCSPLEGLYMSDN  245 (623)
Q Consensus       172 n~l~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n  245 (623)
                      +.-.  ..--+.+...+++|.+||++.|. ++......+.+++.|++|.++.|..  ++|..   +...|.|.+|++.++
T Consensus       296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            6421  01112233567888888887654 4444444555666777777766643  23322   344555666665544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=2.8e-10  Score=115.75  Aligned_cols=179  Identities=23%  Similarity=0.200  Sum_probs=120.7

Q ss_pred             cccCCCCCcEEECcCCccccccccccCCCCCC-cccEEEccCCCCC---CCCCcccCC------CCCCcEEEccCCCCCC
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKF-QLESVKLSGSGIH---ATFPKFLYN------QHDLEYVDFSDSNLKG   78 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~---~~~~~~~~~------~~~L~~L~ls~n~l~~   78 (623)
                      ++..+.+||+|.+.++++....    +..+.. .|++|..++. ..   ..+....+.      .-.|.+.++++|.+. 
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~----GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAK----GLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             eeccccceeeEEecCcchhhhh----hhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            3566677777777777765321    112221 4555433221 11   011112221      235788888888887 


Q ss_pred             cCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCccc
Q 038273           79 EFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI  158 (623)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~  158 (623)
                      .+..++ .-++.|+.|+|++|+++...  .+..+++|++|||+.|.+. .+|..-...+ .|+.|++++|.++.  -..+
T Consensus       178 ~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gi  250 (1096)
T KOG1859|consen  178 LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGI  250 (1096)
T ss_pred             hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh--hhhH
Confidence            555554 77889999999999998753  6788999999999999988 7776544445 59999999998873  2458


Q ss_pred             CCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      .++.+|+.||+++|-+.+.-.-.....+..|+.|.|.+|.+-
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            889999999999998874433333445778899999998764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=5e-09  Score=106.88  Aligned_cols=109  Identities=27%  Similarity=0.302  Sum_probs=86.3

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeee
Q 038273          424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS  503 (623)
Q Consensus       424 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  503 (623)
                      ++.++.|+|++|+++...  .+..++.|++|||++|.+..+..-...++. |+.|.+++|.++..  ..+.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            578899999999998543  788899999999999999855444455555 99999999998844  4567899999999


Q ss_pred             cccCcccccCC-CCccccCCCCCccccCCCCCCCC
Q 038273          504 VAHNNLSGKIP-EWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       504 l~~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +++|-+.+... ..+..+..|+.|.+.|||.-|.+
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99998775322 22335677889999999999964

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.2e-09  Score=96.21  Aligned_cols=87  Identities=24%  Similarity=0.222  Sum_probs=41.8

Q ss_pred             CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCc-CCcccchHHhhCCCCCCEE
Q 038273          114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ-LTGEIPEHLVIGCFNLEYL  192 (623)
Q Consensus       114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L  192 (623)
                      .|+++||++..++..-...+...|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..--..++.++..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            355555555544422222333334555555555555554444455555555555555542 2212222334455555555


Q ss_pred             EcccCcCc
Q 038273          193 VLSENSLH  200 (623)
Q Consensus       193 ~l~~n~l~  200 (623)
                      ++++|.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            55555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.34  E-value=9.4e-08  Score=86.41  Aligned_cols=243  Identities=24%  Similarity=0.242  Sum_probs=121.7

Q ss_pred             cccEEEccCCCCCCC----CCcccCCCCCCcEEEccCCCC---CCcCChH------HhhCCCCCCEEEccCCcCcCcCCC
Q 038273           41 QLESVKLSGSGIHAT----FPKFLYNQHDLEYVDFSDSNL---KGEFPNW------LLENNTNLNTLVLRNNSLSGPFRM  107 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~l---~~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~  107 (623)
                      .+++++||+|.|...    +...+.+-.+|+..++|.-..   .+.+++.      .+-+||+|+..+|+.|.+....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            567777777776544    223344456677777764321   1122221      123566677777766666544333


Q ss_pred             C----CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHH-
Q 038273          108 P----IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL-  182 (623)
Q Consensus       108 ~----~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  182 (623)
                      .    +.+.+.|++|.+++|.+.-..-..++.   .|.+|  ..|       .-.+.-|.|++....+|++. ..+... 
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~l--a~n-------KKaa~kp~Le~vicgrNRle-ngs~~~~  177 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHL--AYN-------KKAADKPKLEVVICGRNRLE-NGSKELS  177 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHH--HHH-------hhhccCCCceEEEeccchhc-cCcHHHH
Confidence            2    334556666666666543100011111   01100  000       11233456666666666655 333322 


Q ss_pred             ---hhCCCCCCEEEcccCcCccc-----cccccccCCCCCEEecccccCcc----ccCccCcCCCCCcEEECcCCcCccc
Q 038273          183 ---VIGCFNLEYLVLSENSLHGQ-----LFYKKIYLRKLARLHLDANYCTG----EIPKSLSNCSPLEGLYMSDNNLYGN  250 (623)
Q Consensus       183 ---~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~  250 (623)
                         +..-.+|+++.+..|.|...     ....+..+++|+.|++..|.++-    .+..++..++.|+.|.+.+|-++..
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence               22224667777777665432     22334456677777777776552    2334556667778888887766543


Q ss_pred             cchhc------cCCCCCCEEECcccccccccccc-----c--cCCCCCcEEeCcCccce
Q 038273          251 IPAWL------GNLSSLNDIMMAINHLQGPIPLE-----F--CQLNYLEILDLSENNIS  296 (623)
Q Consensus       251 ~~~~l------~~l~~L~~L~l~~n~~~~~~~~~-----~--~~l~~L~~L~l~~n~~~  296 (623)
                      ...++      ...++|..|-..+|.+.+.....     +  ..+|-|..|.+.+|++.
T Consensus       258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            33222      12456666666666554322111     1  23455555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.9e-07  Score=85.60  Aligned_cols=84  Identities=19%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             CCCCCEEECccccccc--cccccccCCCCCcEEeCcCccceeeCCCC-CCCCcccEEEccCccccccCCCCCccCCCcee
Q 038273          258 LSSLNDIMMAINHLQG--PIPLEFCQLNYLEILDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV  334 (623)
Q Consensus       258 l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  334 (623)
                      ++.++++++.+|.++.  .+...+.++|.|+.|+++.|.+...+... ....+|+.+.+.+..+.-.........+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4566666666666652  22334556677777777777666555444 24555666666555543222222244455555


Q ss_pred             EEeCCCC
Q 038273          335 TLDLSYN  341 (623)
Q Consensus       335 ~L~L~~n  341 (623)
                      +|.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            6655555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=3.2e-07  Score=84.21  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC-CchhhhccccCcEEEcccccccccCch------hhcC
Q 038273          305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN-IPYWIERLTRLRYLILANNNLEGEVPN------QLCR  377 (623)
Q Consensus       305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~  377 (623)
                      ++++..+.+..|.+...-....+..++.+-.|+|+.+++.+- .-+.+.+++.|..|.++++++......      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            456666777777665444444455566677788888877642 124566778888888888887643321      2355


Q ss_pred             CCCCCEEEc
Q 038273          378 LKQLRLIDL  386 (623)
Q Consensus       378 l~~L~~L~l  386 (623)
                      +++++.|+=
T Consensus       278 L~~v~vLNG  286 (418)
T KOG2982|consen  278 LTKVQVLNG  286 (418)
T ss_pred             ccceEEecC
Confidence            667776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=3.5e-07  Score=74.01  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=18.5

Q ss_pred             cCcEEEcccccccccCchh---hcCCCCCCEEEccCCcCc
Q 038273          356 RLRYLILANNNLEGEVPNQ---LCRLKQLRLIDLSNNNLF  392 (623)
Q Consensus       356 ~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~  392 (623)
                      .+..++|++|++. .++..   +.....|..+++++|.+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk   66 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK   66 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh
Confidence            3455666666654 22332   233344555566666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.07  E-value=1.9e-06  Score=78.24  Aligned_cols=214  Identities=22%  Similarity=0.138  Sum_probs=127.5

Q ss_pred             cccCCCCCcEEECcCCccccccccccC-CC-CCCcccEEEccCCCCCCC----------CCcccCCCCCCcEEEccCCCC
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHS-MT-PKFQLESVKLSGSGIHAT----------FPKFLYNQHDLEYVDFSDSNL   76 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~ls~n~l   76 (623)
                      .+..+..++.+|||+|.+......... .+ ...+|+..+++.-...-.          +..++.+|++|+.++||.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            345577899999999987543222110 01 112788888876532211          224567999999999999998


Q ss_pred             CCcCChH---HhhCCCCCCEEEccCCcCcCcCCC-------------CCCCCCCCCEEEccCCCCCCCCChhhhh----c
Q 038273           77 KGEFPNW---LLENNTNLNTLVLRNNSLSGPFRM-------------PIQPHWHLDTLHVSKNFFQGNIPLEIGV----Y  136 (623)
Q Consensus        77 ~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~----~  136 (623)
                      ....|+.   +.++-..|.+|.+++|.+-...-.             ....-|.|++....+|++. ..|.....    .
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence            7666663   346678999999999976321111             1234567888888888876 44443321    1


Q ss_pred             CCCccEEecccCcccccC-----CcccCCCCCCCEEEccCCcCCccc---chHHhhCCCCCCEEEcccCcCcccccccc-
Q 038273          137 FPRLVYLNLSRNDFNGSI-----PSSIGDMNSLKFLDLSHNQLTGEI---PEHLVIGCFNLEYLVLSENSLHGQLFYKK-  207 (623)
Q Consensus       137 l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  207 (623)
                      -.+|+.+.+..|.|....     -..+..+.+|++||+..|-++-..   -..+...-+.|+.|.+..|-++......+ 
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            246777777777765221     112345677888888777665111   11222334456777777776654333221 


Q ss_pred             -----ccCCCCCEEecccccC
Q 038273          208 -----IYLRKLARLHLDANYC  223 (623)
Q Consensus       208 -----~~~~~L~~L~l~~n~~  223 (623)
                           ...++|+.|...+|.+
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHhhhhcCCCccccccchhhh
Confidence                 1245555555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.00  E-value=1.3e-05  Score=67.83  Aligned_cols=60  Identities=22%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             ccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273           59 FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS  121 (623)
Q Consensus        59 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (623)
                      +|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|.++++++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344444455444442 233 344444444444444444442 333333344444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=9.5e-06  Score=70.61  Aligned_cols=59  Identities=27%  Similarity=0.324  Sum_probs=28.5

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCC
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQ  126 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  126 (623)
                      +...+||++|.+. .++.  |..++.|++|.+.+|+|+.+.|.--.-+++|+.|.+++|++.
T Consensus        43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            4455555555544 2221  344555555555555555444433333444555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=1.1e-05  Score=70.13  Aligned_cols=104  Identities=22%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273          116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS  195 (623)
Q Consensus       116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  195 (623)
                      +.+++.+.++. . ...++....+...+||++|.+.  ....|..++.|..|.+.+|+|+ .+.+.+-.-+++|+.|.+.
T Consensus        22 ~e~~LR~lkip-~-ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP-V-IENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc-c-hhhccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            34455544433 1 1224444567778888888776  2345777788888888888887 7777766667778888888


Q ss_pred             cCcCcccc-ccccccCCCCCEEecccccCc
Q 038273          196 ENSLHGQL-FYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       196 ~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +|++.... ...+..+++|+.|.+-+|.++
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchh
Confidence            77765321 122334445555555444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=4.3e-07  Score=73.53  Aligned_cols=112  Identities=29%  Similarity=0.390  Sum_probs=52.0

Q ss_pred             ccEEEccCCCCCCC--CCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEE
Q 038273           42 LESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH  119 (623)
Q Consensus        42 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  119 (623)
                      +..++|++|.+...  .+..+....+|+..++++|.++ .+|..+-...+-+++|++.+|.+                  
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei------------------   89 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI------------------   89 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh------------------
Confidence            44555555554311  1222334445555555555555 45555444444444444444444                  


Q ss_pred             ccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHH
Q 038273          120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL  182 (623)
Q Consensus       120 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  182 (623)
                            + .+|.++.. ++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+
T Consensus        90 ------s-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl  142 (177)
T KOG4579|consen   90 ------S-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL  142 (177)
T ss_pred             ------h-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence                  3 34444322 344444444444444 34444444445555555555544 454443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.98  E-value=1.9e-05  Score=66.85  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             cCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCccc
Q 038273           79 EFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI  158 (623)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~  158 (623)
                      .+++..|.++.+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......|
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccc
Confidence            34556677777788777764 466666667777777888877764 55 66666666666777777765 4444555667


Q ss_pred             CCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCC
Q 038273          159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKL  213 (623)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  213 (623)
                      ..+++|+.+++..+ +. .++...|.++ +++.+.+.. .+.......|.++++|
T Consensus        78 ~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77778888877664 55 6777777666 777777765 3444445566666555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.96  E-value=2.8e-06  Score=91.49  Aligned_cols=151  Identities=22%  Similarity=0.248  Sum_probs=89.1

Q ss_pred             cccEEEccCCCCCCC-CCcccC-CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEE
Q 038273           41 QLESVKLSGSGIHAT-FPKFLY-NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL  118 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  118 (623)
                      +|++|+++|...... =|..++ .+|.|+.|.+++-.+...--..+..++|+|..||++++.++..  ..+..+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            677777777543211 122233 4677777777765554221223446677777777777777653  456667777777


Q ss_pred             EccCCCCCC-CCChhhhhcCCCccEEecccCcccccC------CcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273          119 HVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSI------PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY  191 (623)
Q Consensus       119 ~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  191 (623)
                      .+.+-.+.. ..-..++. +++|+.||+|........      -+.-..+|+|+.||.+++.+...+-+.+...-++|+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            776655541 12234555 667888887765433111      1122347889999999888776665655555556655


Q ss_pred             EEc
Q 038273          192 LVL  194 (623)
Q Consensus       192 L~l  194 (623)
                      +-+
T Consensus       280 i~~  282 (699)
T KOG3665|consen  280 IAA  282 (699)
T ss_pred             hhh
Confidence            543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=8.7e-06  Score=53.28  Aligned_cols=36  Identities=33%  Similarity=0.637  Sum_probs=14.5

Q ss_pred             cCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                      +|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2223444444444444444444

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.86  E-value=4.7e-07  Score=87.13  Aligned_cols=277  Identities=19%  Similarity=0.157  Sum_probs=117.4

Q ss_pred             cccEEEccCCCCCCC--CCcccCCCCCCcEEEccCCC-CCCcCChHHhhCCCCCCEEEccCC-cCcCcCCC-CCCCCCCC
Q 038273           41 QLESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSDSN-LKGEFPNWLLENNTNLNTLVLRNN-SLSGPFRM-PIQPHWHL  115 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L  115 (623)
                      .|+.|.+++|.-.+.  +-..-.++++++.|++.++. +++..-.++-..+++|+.|++..| .++..... .-..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            456666666654332  12233455666666665554 232222233345566666666553 22221111 12345566


Q ss_pred             CEEEccCCC-CCCCCChhhhhcCCCccEEecccCcccc--cCCcccCCCCCCCEEEccCCc-CCcccchHHhhCCCCCCE
Q 038273          116 DTLHVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNG--SIPSSIGDMNSLKFLDLSHNQ-LTGEIPEHLVIGCFNLEY  191 (623)
Q Consensus       116 ~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~  191 (623)
                      ++++++.+. +++.--..+...++.++.+.+.+|.-.+  .+-..-+.+..+..+++..|. +++.--..+..++..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            666665553 2222222223333444555444432110  000011223334444444432 221111122234555566


Q ss_pred             EEcccCcC-cccccc-ccccCCCCCEEeccccc-CccccCccC-cCCCCCcEEECcCCcCccc--cchhccCCCCCCEEE
Q 038273          192 LVLSENSL-HGQLFY-KKIYLRKLARLHLDANY-CTGEIPKSL-SNCSPLEGLYMSDNNLYGN--IPAWLGNLSSLNDIM  265 (623)
Q Consensus       192 L~l~~n~l-~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~  265 (623)
                      |..+++.- +..... --.+.++|+.+-++.++ ++..-...+ .+++.|+.+++..+.....  +...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            65555432 111111 12244566666665553 221111111 2455666666665543211  111123456666666


Q ss_pred             Cccccccccc-----cccccCCCCCcEEeCcCccceee--CCCCCCCCcccEEEccCcc
Q 038273          266 MAINHLQGPI-----PLEFCQLNYLEILDLSENNISGT--LPSCSSHSTIQQVHLSKNM  317 (623)
Q Consensus       266 l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~  317 (623)
                      ++.+......     ...-..+..|..+.++++.....  ......+++|+.+++.++.
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            6655432111     11123455666677776654321  2222345667766666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.3e-05  Score=52.46  Aligned_cols=38  Identities=34%  Similarity=0.637  Sum_probs=32.2

Q ss_pred             CCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273          473 KQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG  511 (623)
Q Consensus       473 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  511 (623)
                      ++|++|++++|+|+ .+|..+.+++.|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 466678999999999999999984

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=3.7e-05  Score=76.20  Aligned_cols=72  Identities=10%  Similarity=0.176  Sum_probs=39.7

Q ss_pred             CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccc-cccccCchhhcCCCCCCE
Q 038273          305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN-NLEGEVPNQLCRLKQLRL  383 (623)
Q Consensus       305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  383 (623)
                      +..++.|++++|.+. .+|.    -..+|++|++++|.--...|+.+.  ++|+.|++++| .+. .+|      ++|+.
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccce
Confidence            456777777777553 2331    134577777776543334554442  46777777776 333 233      24666


Q ss_pred             EEccCCc
Q 038273          384 IDLSNNN  390 (623)
Q Consensus       384 L~l~~n~  390 (623)
                      |+++.+.
T Consensus       117 L~L~~n~  123 (426)
T PRK15386        117 LEIKGSA  123 (426)
T ss_pred             EEeCCCC
Confidence            6665544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=4.3e-06  Score=90.07  Aligned_cols=150  Identities=17%  Similarity=0.255  Sum_probs=104.3

Q ss_pred             CCCcEEEccCCC-CCCcCChHHhhCCCCCCEEEccCCcCcC-cCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273           64 HDLEYVDFSDSN-LKGEFPNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV  141 (623)
Q Consensus        64 ~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  141 (623)
                      .+|++||++|.. +...-|..+...+|+|++|.+.+-.+.. .......++++|..||+|++.++ .+ ..+.. +++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHH
Confidence            689999999865 3334455666789999999998866643 22334567899999999999988 44 45555 78999


Q ss_pred             EEecccCcccc-cCCcccCCCCCCCEEEccCCcCCcccchHH------hhCCCCCCEEEcccCcCccccccccc-cCCCC
Q 038273          142 YLNLSRNDFNG-SIPSSIGDMNSLKFLDLSHNQLTGEIPEHL------VIGCFNLEYLVLSENSLHGQLFYKKI-YLRKL  213 (623)
Q Consensus       142 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L  213 (623)
                      .|.+.+=.+.. ..-..+.++++|++||+|..... ..+..+      ...+|+|+.||.+++.+.......+. .-++|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            99888766553 22235778999999999987655 333111      13588999999999887764444332 23445


Q ss_pred             CEEe
Q 038273          214 ARLH  217 (623)
Q Consensus       214 ~~L~  217 (623)
                      +.+.
T Consensus       278 ~~i~  281 (699)
T KOG3665|consen  278 QQIA  281 (699)
T ss_pred             hhhh
Confidence            4443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.77  E-value=5.1e-07  Score=86.89  Aligned_cols=278  Identities=19%  Similarity=0.136  Sum_probs=171.6

Q ss_pred             CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCC--CCcccCCCCCCcEEEccCC-CCCCcCChHHhhCCCC
Q 038273           14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSDS-NLKGEFPNWLLENNTN   90 (623)
Q Consensus        14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~   90 (623)
                      ..||.|.+.++.-....+.......++++++|.+.+|.....  ....-..|++|++|++..| .++...-..+...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            378999999987555444443345566999999999974322  2222346899999999985 4554334445678999


Q ss_pred             CCEEEccCCc-CcCcC-CCCCCCCCCCCEEEccCCCCCCCCChh----hhhcCCCccEEecccCc-ccccCCcc-cCCCC
Q 038273           91 LNTLVLRNNS-LSGPF-RMPIQPHWHLDTLHVSKNFFQGNIPLE----IGVYFPRLVYLNLSRND-FNGSIPSS-IGDMN  162 (623)
Q Consensus        91 L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~----~~~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~  162 (623)
                      |++|+++.|. |++.. .....++..++.+.+.+|.   ..+..    +...++-+..+++..|. +++..-.. -..+.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            9999999984 44311 1224556667777777653   22222    22334456677766663 33221111 23577


Q ss_pred             CCCEEEccCCc-CCcccchHHhhCCCCCCEEEcccCcC-cccccccc-ccCCCCCEEecccccCcc--ccCccCcCCCCC
Q 038273          163 SLKFLDLSHNQ-LTGEIPEHLVIGCFNLEYLVLSENSL-HGQLFYKK-IYLRKLARLHLDANYCTG--EIPKSLSNCSPL  237 (623)
Q Consensus       163 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L  237 (623)
                      .|++|+.+++. ++..+-..+..++.+|+.+-++.+.. +......+ .+++.|+.+++..+....  .+...-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            88888888764 33233334446788999999988863 32222222 357788888888875431  122223577889


Q ss_pred             cEEECcCCcC-cccc----chhccCCCCCCEEECcccccc-ccccccccCCCCCcEEeCcCcc
Q 038273          238 EGLYMSDNNL-YGNI----PAWLGNLSSLNDIMMAINHLQ-GPIPLEFCQLNYLEILDLSENN  294 (623)
Q Consensus       238 ~~L~L~~n~l-~~~~----~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~  294 (623)
                      +++.++.+.. ++..    ...-..+..|+.+.++++... ...-+.+..+++|+.+++-.+.
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            9999987753 2221    111234677888888888654 2334456678888888887765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=0.00013  Score=72.39  Aligned_cols=55  Identities=15%  Similarity=0.170  Sum_probs=27.1

Q ss_pred             CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCC
Q 038273           62 NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN  123 (623)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  123 (623)
                      .+.++++|++++|.++ .+|.    -..+|++|.+++|.--...|..+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3455666666666555 4451    12346666665543222233322  135666666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.27  E-value=2.4e-05  Score=83.19  Aligned_cols=63  Identities=32%  Similarity=0.192  Sum_probs=27.5

Q ss_pred             CCCCCCEEEccCCc-CCcccchHHhhCCCCCCEEEcccCc-Ccccccc-ccccCCCCCEEeccccc
Q 038273          160 DMNSLKFLDLSHNQ-LTGEIPEHLVIGCFNLEYLVLSENS-LHGQLFY-KKIYLRKLARLHLDANY  222 (623)
Q Consensus       160 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~~L~~L~l~~n~  222 (623)
                      .+++|+.|+++.+. ++...-..+...+++|++|.+.++. ++..... ....++.|++|+++++.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34555555555554 3322222232335555555554444 3322221 12234555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00035  Score=63.84  Aligned_cols=101  Identities=27%  Similarity=0.294  Sum_probs=51.1

Q ss_pred             CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCC--CCCCCCChhhhhcCCCccEEecccCcccccCCcc---cCCCCC
Q 038273           89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN--FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS---IGDMNS  163 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~  163 (623)
                      ..|+.|++.+..++..  ..+..+++|++|.++.|  ++.+.++.-.-. +|+|++|++++|+|..  ++.   +..+.+
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccc--ccccchhhhhcc
Confidence            3444444444444321  23344555666666665  444333333333 3677777777776652  222   345566


Q ss_pred             CCEEEccCCcCCc--ccchHHhhCCCCCCEEEc
Q 038273          164 LKFLDLSHNQLTG--EIPEHLVIGCFNLEYLVL  194 (623)
Q Consensus       164 L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l  194 (623)
                      |..|++.+|..+.  .--..+|.-+++|++|+-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            6677777766552  112344555666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.96  E-value=6.1e-05  Score=80.06  Aligned_cols=189  Identities=20%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             CCCCCcEEEccCCCCCCcC-ChHHhhCCCCCCEEEccCC-cCcCcC----CCCCCCCCCCCEEEccCCC-CCCCCChhhh
Q 038273           62 NQHDLEYVDFSDSNLKGEF-PNWLLENNTNLNTLVLRNN-SLSGPF----RMPIQPHWHLDTLHVSKNF-FQGNIPLEIG  134 (623)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~  134 (623)
                      .++.|+.|.+.++.-.... -..+...+++|+.|+++++ ......    ......+++|+.|+++.+. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4688888888876432121 1234467888888888863 211111    1234456788888888887 5544445555


Q ss_pred             hcCCCccEEecccCc-ccccCC-cccCCCCCCCEEEccCCcCCc-c-cchHHhhCCCCCCEEEcccCcCccccccccccC
Q 038273          135 VYFPRLVYLNLSRND-FNGSIP-SSIGDMNSLKFLDLSHNQLTG-E-IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYL  210 (623)
Q Consensus       135 ~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  210 (623)
                      ..+++|+.|.+.+|. +++..- .....+++|++|+++.+.... . +... ..++++++.|.+....-          +
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~----------c  334 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG----------C  334 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------C
Confidence            557889998877776 443222 223567889999998876531 1 2222 34577777765543321          3


Q ss_pred             CCCCEEecccccCc---cccCccCcCCCCCcEEECcCCcCcccc-chhccCCCCC
Q 038273          211 RKLARLHLDANYCT---GEIPKSLSNCSPLEGLYMSDNNLYGNI-PAWLGNLSSL  261 (623)
Q Consensus       211 ~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L  261 (623)
                      +.++.+.+.+....   .........+++++.+.+..+...... ...+.+++.|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            33444444332211   111223456677777777666533222 2334444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.64  E-value=0.0015  Score=59.83  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeeCCCC--cccccCCccCCCCCCCcEEECCCCccccc-CccccccCCCCC
Q 038273          424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN--NLTGVIPVSFSNLKQVESLDVSYNNLNGK-IPPQLVELNVLA  500 (623)
Q Consensus       424 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  500 (623)
                      +..++.+.+.+..++..  ..+..+++|+.|.++.|  .+.+-.+-....+|+|++|++++|+|... --..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            45666666777666532  35677889999999999  55555555556679999999999988731 112345677788


Q ss_pred             eeecccCcccccCC---CCccccCCCCCccc
Q 038273          501 VFSVAHNNLSGKIP---EWTAQFTTFKEDSY  528 (623)
Q Consensus       501 ~L~l~~N~l~~~~~---~~~~~~~~l~~l~l  528 (623)
                      .|++.+|.-+....   ..+.-+++|+.++-
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            89999987765322   12333556665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=8e-05  Score=68.18  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=16.2

Q ss_pred             CCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcC
Q 038273          159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL  199 (623)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  199 (623)
                      .+++.|++|.|+-|.|+ ++..  +..|++|++|+|..|.|
T Consensus        38 ~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCI   75 (388)
T ss_pred             HhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhccc
Confidence            34444444444444444 3322  22344444444444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.00019  Score=65.77  Aligned_cols=84  Identities=24%  Similarity=0.216  Sum_probs=61.8

Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchH-HhhCCCCCC
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEH-LVIGCFNLE  190 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~  190 (623)
                      +.+.+.|++.++.+. .  .++...++.|++|.|+-|+|+..  ..+..|++|+.|.|+.|.|. .+.+- -+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            345667788888776 2  35666678899999999998843  45788999999999999987 55543 235778888


Q ss_pred             EEEcccCcCcc
Q 038273          191 YLVLSENSLHG  201 (623)
Q Consensus       191 ~L~l~~n~l~~  201 (623)
                      .|.|..|.-.+
T Consensus        92 ~LWL~ENPCc~  102 (388)
T KOG2123|consen   92 TLWLDENPCCG  102 (388)
T ss_pred             hHhhccCCccc
Confidence            88887776544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.04  E-value=0.011  Score=32.03  Aligned_cols=12  Identities=58%  Similarity=0.675  Sum_probs=5.7

Q ss_pred             CcEEECCCCccc
Q 038273          475 VESLDVSYNNLN  486 (623)
Q Consensus       475 L~~L~Ls~n~l~  486 (623)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.33  E-value=0.016  Score=31.32  Aligned_cols=19  Identities=58%  Similarity=0.791  Sum_probs=9.9

Q ss_pred             CCeeeCCCCcccccCCccCC
Q 038273          451 IRALNFSHNNLTGVIPVSFS  470 (623)
Q Consensus       451 L~~L~L~~n~l~~~~~~~~~  470 (623)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555666666665 3333344

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.98  E-value=0.001  Score=68.80  Aligned_cols=90  Identities=29%  Similarity=0.285  Sum_probs=47.1

Q ss_pred             CCCCCCEEEccCCcCCcccc---hHHhhCCCC-CCEEEcccCcCccc----cccccccC-CCCCEEecccccCcccc---
Q 038273          160 DMNSLKFLDLSHNQLTGEIP---EHLVIGCFN-LEYLVLSENSLHGQ----LFYKKIYL-RKLARLHLDANYCTGEI---  227 (623)
Q Consensus       160 ~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~-L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~l~~n~~~~~~---  227 (623)
                      ...++++|++.+|.++...-   ...+...+. +..+++..|.+...    ....+..+ ..++.++++.|.++...   
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            34555666666655441111   111122223 44566666655432    12223333 46677777777766432   


Q ss_pred             -CccCcCCCCCcEEECcCCcCcc
Q 038273          228 -PKSLSNCSPLEGLYMSDNNLYG  249 (623)
Q Consensus       228 -~~~~~~l~~L~~L~L~~n~l~~  249 (623)
                       ...+..++.++.+.+++|.+..
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCcccc
Confidence             2445566788888888887754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.81  E-value=0.066  Score=26.76  Aligned_cols=13  Identities=31%  Similarity=0.588  Sum_probs=4.6

Q ss_pred             CCcEEEccCCCCC
Q 038273           65 DLEYVDFSDSNLK   77 (623)
Q Consensus        65 ~L~~L~ls~n~l~   77 (623)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.51  E-value=0.13  Score=28.99  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=15.2

Q ss_pred             CCCCcEEEccCCCCCCcCChHHh
Q 038273           63 QHDLEYVDFSDSNLKGEFPNWLL   85 (623)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~   85 (623)
                      +++|++|++++|.++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 6776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.51  E-value=0.13  Score=28.99  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=15.2

Q ss_pred             CCCCcEEEccCCCCCCcCChHHh
Q 038273           63 QHDLEYVDFSDSNLKGEFPNWLL   85 (623)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~   85 (623)
                      +++|++|++++|.++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 6776654

>TIGR00864 PCC polycystin cation channel protein

Probab=92.17  E-value=0.032  Score=67.63  Aligned_cols=43  Identities=28%  Similarity=0.532  Sum_probs=31.5

Q ss_pred             ecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 038273          503 SVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA  550 (623)
Q Consensus       503 ~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~  550 (623)
                      ||++|+|+.+.+..|..+++|+.|++++|||.|     +|+..|+..|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C-----DC~L~WL~~W   43 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC-----DCGLARLPRW   43 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccc-----ccccHHHHHH
Confidence            567777777777777777888888888899999     5555554444

Note: this model has been restricted to the amino half because for technical reasons.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.64  E-value=0.18  Score=28.44  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=16.5

Q ss_pred             CCCCCEEEccCCcCCcccchHHhh
Q 038273          161 MNSLKFLDLSHNQLTGEIPEHLVI  184 (623)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~  184 (623)
                      +++|++|++++|++. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356777888888777 77777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.64  E-value=0.18  Score=28.44  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=16.5

Q ss_pred             CCCCCEEEccCCcCCcccchHHhh
Q 038273          161 MNSLKFLDLSHNQLTGEIPEHLVI  184 (623)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~  184 (623)
                      +++|++|++++|++. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356777888888777 77777653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.55  E-value=0.0091  Score=53.62  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273          425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV  504 (623)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  504 (623)
                      ...+.||++.|.+. .....+.-++.+..|+++.|++. ..|..+.+...+..+++.+|..+ ..|-++...+.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34555666666554 33344555566666666666665 45555666666666666666655 45556666666666666


Q ss_pred             ccCcc
Q 038273          505 AHNNL  509 (623)
Q Consensus       505 ~~N~l  509 (623)
                      -.|.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.97  E-value=0.0022  Score=66.46  Aligned_cols=185  Identities=24%  Similarity=0.233  Sum_probs=104.7

Q ss_pred             CcEEECcCCccccccccccC--CCCCCcccEEEccCCCCCCCC----CcccCCC-CCCcEEEccCCCCCCc----CChHH
Q 038273           16 LKVFSGECNEIFVESESSHS--MTPKFQLESVKLSGSGIHATF----PKFLYNQ-HDLEYVDFSDSNLKGE----FPNWL   84 (623)
Q Consensus        16 L~~L~ls~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~ls~n~l~~~----~~~~~   84 (623)
                      +..|+|..|.+.........  .-...+|..|++++|.+...-    -..+... ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            67777777776543222111  112227778888888776331    1222222 4567777777776633    22232


Q ss_pred             hhCCCCCCEEEccCCcCcC----cCCCC----CCCCCCCCEEEccCCCCCCCCChhh---hhcCCC-ccEEecccCcccc
Q 038273           85 LENNTNLNTLVLRNNSLSG----PFRMP----IQPHWHLDTLHVSKNFFQGNIPLEI---GVYFPR-LVYLNLSRNDFNG  152 (623)
Q Consensus        85 ~~~l~~L~~L~L~~n~i~~----~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~---~~~l~~-L~~L~L~~n~i~~  152 (623)
                       .....++.++++.|.+..    ..+..    +....++++|.+++|.++...-..+   ....+. ++.+++..|++.+
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence             346777777777776531    11222    3346778888888887662111111   111233 6668888887664


Q ss_pred             c----CCcccCCC-CCCCEEEccCCcCCcccchHH---hhCCCCCCEEEcccCcCcc
Q 038273          153 S----IPSSIGDM-NSLKFLDLSHNQLTGEIPEHL---VIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       153 ~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~  201 (623)
                      .    ....+..+ ..+++++++.|.++..-...+   ...++.++.+.+++|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3    22234445 677888998888874333222   2356688888888888765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.42  E-value=0.023  Score=50.10  Aligned_cols=81  Identities=14%  Similarity=0.102  Sum_probs=39.1

Q ss_pred             CCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCC-CCCChhhhhcCCCccEEecccC-cccccCCcccCCCCCCCEEE
Q 038273           91 LNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRN-DFNGSIPSSIGDMNSLKFLD  168 (623)
Q Consensus        91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~  168 (623)
                      ++.++-+++.|.++.-+.+..++.++.|.+.+|.-- +.--..+....++|+.|++++| .|+...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455555555554444444445555555555554311 0011112223456777777765 34443344455556666665


Q ss_pred             ccC
Q 038273          169 LSH  171 (623)
Q Consensus       169 l~~  171 (623)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.01  E-value=0.016  Score=52.04  Aligned_cols=86  Identities=21%  Similarity=0.261  Sum_probs=43.9

Q ss_pred             ccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCC
Q 038273          445 IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFK  524 (623)
Q Consensus       445 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  524 (623)
                      +......+.||++.|++. -....|+-++.|..||++.|++. ..|..+.....+..+++.+|..+ -.|.++...+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344445555555555544 22334444555555555555555 44555555555555555555554 3444455555555


Q ss_pred             CccccCCCC
Q 038273          525 EDSYEGNPL  533 (623)
Q Consensus       525 ~l~l~~Np~  533 (623)
                      +.+.-+||+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            555555553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.96  E-value=0.25  Score=27.24  Aligned_cols=14  Identities=36%  Similarity=0.622  Sum_probs=6.5

Q ss_pred             CCCcEEECCCCccc
Q 038273          473 KQVESLDVSYNNLN  486 (623)
Q Consensus       473 ~~L~~L~Ls~n~l~  486 (623)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            44555555555554

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.10  E-value=0.15  Score=45.10  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=18.4

Q ss_pred             CccEEecccCcccccCCcccCCCCCCCEEEccCCc
Q 038273          139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ  173 (623)
Q Consensus       139 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  173 (623)
                      .++.+|-+++.|..+.-..+.+++.++.|.+.+|.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            35555555555554444445555555555555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	623
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-52
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-31
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-52
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-31
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-12
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 178/577 (30%), Positives = 259/577 (44%), Gaps = 104/577 (18%)
Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXX 101
           LE + +S +      P FL +   L+++D S + L G+F                     
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-- 159
            GP  +P  P   L  L +++N F G IP  +      L  L+LS N F G++P   G  
Sbjct: 261 -GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 160 -----------------------DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
                                   M  LK LDLS N+ +GE+PE L     +L  L LS 
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 197 NSLHGQLFYKKIYLRK--LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW 254
           N+  G +        K  L  L+L  N  TG+IP +LSNCS L  L++S N L G IP+ 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314
           LG+LS L D+ + +N L+G IP E   +  LE L L  N+++G +PS  S+ T       
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------- 490
Query: 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ 374
                            ++  + LS N  +G IP WI RL  L  L L+NN+  G +P +
Sbjct: 491 -----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 375 LCRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNG---DNDGSSAP 416
           L   + L  +DL+ N   G IP  +   S               + N+G   +  G+   
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 417 TRYKG------------KPLN---KMYG---------------VDLSCNKLTGEIPPQIG 446
             ++G             P N   ++YG               +D+S N L+G IP +IG
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
            +  +  LN  HN+++G IP    +L+ +  LD+S N L+G+IP  +  L +L    +++
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
           NNLSG IPE   QF TF    +  NP LCG PLP CD
Sbjct: 714 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD 749

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 205/456 (44%), Gaps = 67/456 (14%)
Query: 115 LDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSH 171
           L +L +S+N   G +     +     L +LN+S N  DF G +   +  +NSL+ LDLS 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 172 NQLTGE--IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229
           N ++G   +   L  GC  L++L +S N + G +   +     L  L + +N  +  IP 
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP- 217
Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
            L +CS L+ L +S N L G+    +   + L  + ++ N   GPIP     L  L+ L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLS 275
Query: 290 LSENNISGTLPSCSSHS--TIQQVHLSKNMLYGP------------------------LK 323
           L+EN  +G +P   S +  T+  + LS N  YG                         L 
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT-RLRYLILANNNLEGEVPNQLCR--LKQ 380
             T      +  LDLS+N FSG +P  +  L+  L  L L++NN  G +   LC+     
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440
           L+ + L NN   G+IP  L N S                      ++  + LS N L+G 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCS----------------------ELVSLHLSFNYLSGT 433
Query: 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLA 500
           IP  +G L+ +R L    N L G IP     +K +E+L + +N+L G+IP  L     L 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 501 VFSVAHNNLSGKIPEWTAQFT-----TFKEDSYEGN 531
             S+++N L+G+IP+W  +           +S+ GN
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 178/577 (30%), Positives = 259/577 (44%), Gaps = 104/577 (18%)
Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXX 101
           LE + +S +      P FL +   L+++D S + L G+F                     
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-- 159
            GP  +P  P   L  L +++N F G IP  +      L  L+LS N F G++P   G  
Sbjct: 258 -GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 160 -----------------------DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
                                   M  LK LDLS N+ +GE+PE L     +L  L LS 
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 197 NSLHGQLFYKKIYLRK--LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW 254
           N+  G +        K  L  L+L  N  TG+IP +LSNCS L  L++S N L G IP+ 
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314
           LG+LS L D+ + +N L+G IP E   +  LE L L  N+++G +PS  S+ T       
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------- 487
Query: 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ 374
                            ++  + LS N  +G IP WI RL  L  L L+NN+  G +P +
Sbjct: 488 -----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 375 LCRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNG---DNDGSSAP 416
           L   + L  +DL+ N   G IP  +   S               + N+G   +  G+   
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 417 TRYKG------------KPLN---KMYG---------------VDLSCNKLTGEIPPQIG 446
             ++G             P N   ++YG               +D+S N L+G IP +IG
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
            +  +  LN  HN+++G IP    +L+ +  LD+S N L+G+IP  +  L +L    +++
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
           NNLSG IPE   QF TF    +  NP LCG PLP CD
Sbjct: 711 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD 746

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 205/456 (44%), Gaps = 67/456 (14%)
Query: 115 LDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSH 171
           L +L +S+N   G +     +     L +LN+S N  DF G +   +  +NSL+ LDLS 
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 172 NQLTGE--IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229
           N ++G   +   L  GC  L++L +S N + G +   +     L  L + +N  +  IP 
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP- 214
Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
            L +CS L+ L +S N L G+    +   + L  + ++ N   GPIP     L  L+ L 
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLS 272
Query: 290 LSENNISGTLPSCSSHS--TIQQVHLSKNMLYGP------------------------LK 323
           L+EN  +G +P   S +  T+  + LS N  YG                         L 
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT-RLRYLILANNNLEGEVPNQLCR--LKQ 380
             T      +  LDLS+N FSG +P  +  L+  L  L L++NN  G +   LC+     
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440
           L+ + L NN   G+IP  L N S                      ++  + LS N L+G 
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCS----------------------ELVSLHLSFNYLSGT 430
Query: 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLA 500
           IP  +G L+ +R L    N L G IP     +K +E+L + +N+L G+IP  L     L 
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 501 VFSVAHNNLSGKIPEWTAQFT-----TFKEDSYEGN 531
             S+++N L+G+IP+W  +           +S+ GN
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 36/232 (15%)
Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD 400
           N+  G IP  I +LT+L YL + + N+ G +P+ L ++K L  +D S N L G +P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 401 NTSLHN------NGDNDGSSAPTRYKGKPLNKMY-GVDLSCNKLTGEIPPQIGKLTSIRA 453
            +SL N      +G+    + P  Y     +K++  + +S N+LTG+IPP    L ++  
Sbjct: 146 -SSLPNLVGITFDGNRISGAIPDSYGS--FSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 454 LNFSHNNLTGVIPVSFSNLKQVE-----------------------SLDVSYNNLNGKIP 490
           ++ S N L G   V F + K  +                        LD+  N + G +P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 491 PQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDC 542
             L +L  L   +V+ NNL G+IP+       F   +Y  N  LCG PLP C
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 435 NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLV 494
           N L G IPP I KLT +  L  +H N++G IP   S +K + +LD SYN L+G +PP + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 495 ELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP---DCDVAAVPEAS 551
            L  L   +   N +SG IP+    F+            L GK  P   + ++A V  + 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 552 NEEDGNSLIDMGS 564
           N  +G++ +  GS
Sbjct: 207 NMLEGDASVLFGS 219

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 21/245 (8%)
Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIY--L 210
           ++P  I    +L  LDL +N ++ E+ +    G  +L  LVL  N +     ++K +  L
Sbjct: 47  AVPKEISPDTTL--LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPL 101
Query: 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH 270
           RKL +L++  N+   EIP +L   S L  L + DN +          L ++N I M  N 
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 271 LQG----PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326
           L+     P   +  +LNYL I +     I   LP      T+ ++HL  N +   ++   
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-----TLNELHLDHNKIQA-IELED 212
Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386
               S +  L L +N         +  L  LR L L NN L   VP  L  LK L+++ L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYL 271
Query: 387 SNNNL 391
             NN+
Sbjct: 272 HTNNI 276

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 288 LDLSENNISGTLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
           L+L EN+I         H   ++ + LSKN++   ++ G F    S+ TL+L  N  +  
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK-IEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC----LDNT 402
                E L++LR L L NN +E        R+  LR +DL        I       L N 
Sbjct: 99  PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462
              N G  +    P       L ++  ++LS N+L    P     LTS+R L   H  + 
Sbjct: 159 RYLNLGMCNLKDIPNL---TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 463 GVIPVSFSNLKQVESLDVSYNNL 485
            +   +F +LK +E L++S+NNL
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNL 238

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 288 LDLSENNISGTLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
           L+L EN+I         H   ++ + LSKN++   ++ G F    S+ TL+L  N  +  
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC----LDNT 402
                E L++LR L L NN +E        R+  LR +DL        I       L N 
Sbjct: 99  PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462
              N G  +    P       L ++  ++LS N+L    P     LTS+R L   H  + 
Sbjct: 159 RYLNLGMCNLKDIPNL---TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 463 GVIPVSFSNLKQVESLDVSYNNL 485
            +   +F +LK +E L++S+NNL
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNL 238

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 11/247 (4%)
Query: 135 VYFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
           V  P L +L+LSRN   F G    S     SLK+LDLS N +       L  G   LE+L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHL 401
Query: 193 VLSENSL-HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN- 250
               ++L     F   + LR L  L +   +         +  S LE L M+ N+   N 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG--TLPSCSSHSTI 308
           +P     L +L  + ++   L+   P  F  L+ L++L++S NN     T P     +++
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL 520
Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY--WIERLTRLRYLILANNN 366
           Q +  S N +    K       SS+  L+L+ N F+    +  +++ +   R L++    
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 367 LEGEVPN 373
           +E   P+
Sbjct: 581 MECATPS 587

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 11/247 (4%)
Query: 135 VYFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
           V  P L +L+LSRN   F G    S     SLK+LDLS N +       L  G   LE+L
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL--GLEQLEHL 425
Query: 193 VLSENSL-HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN- 250
               ++L     F   + LR L  L +   +         +  S LE L M+ N+   N 
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG--TLPSCSSHSTI 308
           +P     L +L  + ++   L+   P  F  L+ L++L++S NN     T P     +++
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL 544
Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY--WIERLTRLRYLILANNN 366
           Q +  S N +    K       SS+  L+L+ N F+    +  +++ +   R L++    
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 604
Query: 367 LEGEVPN 373
           +E   P+
Sbjct: 605 MECATPS 611

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 30/252 (11%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
           FP L  L L+ N  +   P +  ++ +L+ L L  N+L   IP  +  G  NL  L +SE
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113
Query: 197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLG 256
           N +   L Y    L  L  L +  N       ++ S  + LE L +   NL  +IP    
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPT--- 169
Query: 257 NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316
                     A++HL G I L    LN   I D S   +        SH       ++ N
Sbjct: 170 ---------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-MTPN 219
Query: 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-LTRLRYLILANN---NLEGEVP 372
            LYG           ++ +L +++ + +  +PY   R L  LR+L L+ N    +EG + 
Sbjct: 220 CLYG----------LNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 373 NQLCRLKQLRLI 384
           ++L RL++++L+
Sbjct: 269 HELLRLQEIQLV 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	623
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-132
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  406 bits (1045), Expect = e-132
 Identities = 160/540 (29%), Positives = 230/540 (42%), Gaps = 61/540 (11%)

Query: 9   PFFNNSKLKVFSGECNEI--FVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDL 66
           P      L+  S   N+    +    S +      L  + LSG+  +   P F  +   L
Sbjct: 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 67  EYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPI-QPHWHLDTLHVSKNFF 125
           E +  S +N  GE P   L     L  L L  N  SG     +      L TL +S N F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 126 QGNIPLEIG-VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
            G I   +       L  L L  N F G IP ++ + + L  L LS N L+G IP  L  
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-G 439

Query: 185 GCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244
               L  L L  N L G++  + +Y++ L  L LD N  TGEIP  LSNC+ L  + +S+
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS 304
           N L G IP W+G L +L  + ++ N   G IP E      L  LDL+ N  +GT+P+   
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-- 557

Query: 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN 364
                                  F +S      ++ N  +G    +I+     +    A 
Sbjct: 558 ----------------------MFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 365 N--NLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGK 422
           N    +G    QL RL      ++++    G      DN                     
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN--------------------- 630

Query: 423 PLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSY 482
               M  +D+S N L+G IP +IG +  +  LN  HN+++G IP    +L+ +  LD+S 
Sbjct: 631 -NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 483 NNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDC 542
           N L+G+IP  +  L +L    +++NNLSG IPE   QF TF    +  NP LCG PLP C
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  316 bits (813), Expect = 1e-98
 Identities = 131/487 (26%), Positives = 214/487 (43%), Gaps = 67/487 (13%)

Query: 42  LESVKLSGSGIHATF---PKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRN 98
           + S+ LS   ++  F      L +   LE +  S+S++ G       + + +L +L L  
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSR 109

Query: 99  NSLSG--PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS 156
           NSLSG       +     L  L+VS N       +  G+    L  L+LS N  +G+   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 157 SI---GDMNSLKFLDLSHNQLTGEIPEHLVIG-CFNLEYLVLSENSLHGQLFYKKIYLRK 212
                     LK L +S N+++G++     +  C NLE+L +S N+              
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNF------------- 212

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
                      +  IP  L +CS L+ L +S N L G+    +   + L  + ++ N   
Sbjct: 213 -----------STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 273 GPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNR 330
           GPIP     L  L+ L L+EN  +G +P     +  T+  + LS N  YG +    F + 
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSC 317

Query: 331 SSIVTLDLSYNSFSGNIPY-WIERLTRLRYLILANNNLEGEVPNQLCRLK-QLRLIDLSN 388
           S + +L LS N+FSG +P   + ++  L+ L L+ N   GE+P  L  L   L  +DLS+
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 389 NNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL 448
           NN  G I   L     +                     +  + L  N  TG+IPP +   
Sbjct: 378 NNFSGPILPNLCQNPKNT--------------------LQELYLQNNGFTGKIPPTLSNC 417

Query: 449 TSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
           + + +L+ S N L+G IP S  +L ++  L +  N L G+IP +L+ +  L    +  N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 509 LSGKIPE 515
           L+G+IP 
Sbjct: 478 LTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  202 bits (517), Expect = 2e-56
 Identities = 86/386 (22%), Positives = 143/386 (37%), Gaps = 105/386 (27%)

Query: 139 RLVYLNLSRNDFN---GSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195
           ++  ++LS    N    ++ SS+  +  L+ L LS++ + G +         +L  L LS
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLS 108

Query: 196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIP--KSLSNCSPLEGLYMSDNNLYGNIPA 253
            NSL                        +G +    SL +CS L+ L +S N L      
Sbjct: 109 RNSL------------------------SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144

Query: 254 -WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
                L+SL                        E+LDLS N+ISG        S      
Sbjct: 145 SGGLKLNSL------------------------EVLDLSANSISGANVVGWVLSD----- 175

Query: 313 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP 372
                               +  L +S N  SG++   + R   L +L +++NN    +P
Sbjct: 176 ----------------GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

Query: 373 NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDL 432
             L     L+ +D+S N L G     +                          ++  +++
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAIST----------------------CTELKLLNI 254

Query: 433 SCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS-FSNLKQVESLDVSYNNLNGKIPP 491
           S N+  G IPP    L S++ L+ + N  TG IP         +  LD+S N+  G +PP
Sbjct: 255 SSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 492 QLVELNVLAVFSVAHNNLSGKIPEWT 517
                ++L   +++ NN SG++P  T
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 4e-15
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 29/147 (19%)

Query: 376 CRLKQLRLIDLSNNNL---FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDL 432
           CR  ++  IDLS+  L   F  +   L +                      L  +  + L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLS----------------------LTGLESLFL 84

Query: 433 SCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP--VSFSNLKQVESLDVSYNNLNGKIP 490
           S + + G +        S+ +L+ S N+L+G +    S  +   ++ L+VS N L+    
Sbjct: 85  SNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

Query: 491 -PQLVELNVLAVFSVAHNNLSGKIPEW 516
               ++LN L V  ++ N++SG     
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVG 170

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  232 bits (593), Expect = 1e-67
 Identities = 100/517 (19%), Positives = 173/517 (33%), Gaps = 61/517 (11%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHD--LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRN 98
            L+ + LS + I A   + L    +  L+ ++ S + +K   P         L  L L N
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNN 204

Query: 99  NSLSGPFRMPIQPHW---HLDTLHVSKNFFQGNIPLEI-GVYFPRLVYLNLSRNDFNGSI 154
             L       +        +  L +S +           G+ +  L  L+LS N+ N   
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 155 PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLA 214
             S   +  L++  L +N +       L  G FN+ YL L  +                 
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRS---------------FT 308

Query: 215 RLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP 274
           +  +           S      LE L M DN++ G        L +L  + ++ +     
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 275 IP----LEFCQLNYLEILDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFN 329
                       + L IL+L++N IS       S    ++ + L  N +   L    +  
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 330 RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG--EVPNQLCRLKQLRLIDLS 387
             +I  + LSYN +          +  L+ L+L    L+     P+    L+ L ++DLS
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT--------G 439
           NNN+       L+                       L K+  +DL  N L         G
Sbjct: 489 NNNIANINDDMLEG----------------------LEKLEILDLQHNNLARLWKHANPG 526

Query: 440 EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVL 499
                +  L+ +  LN   N    +    F +L +++ +D+  NNLN            L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 500 AVFSVAHNNLSGKIPEW-TAQFTTFKEDSYEGNPLLC 535
              ++  N ++    +     F    E     NP  C
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (551), Expect = 1e-61
 Identities = 97/493 (19%), Positives = 160/493 (32%), Gaps = 48/493 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           QL S+ +  + I    P+       L+ ++   + L            TNL  L L +NS
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNS 108

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           +      P     +L TL +S N                L  L LS N         +  
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDI 167

Query: 161 MN--SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQL---FYKKIYLRKLAR 215
               SLK L+LS NQ+    P         L  L L+   L   L      ++    +  
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 216 LHLDANYCTGEIPKSLSNC--SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG 273
           L L  +  +     +      + L  L +S NNL          L  L    +  N++Q 
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSH----------STIQQVHLSKNMLYGPLK 323
                   L  +  L+L  +    ++   S              ++ +++  N + G +K
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IK 345

Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPY----WIERLTRLRYLILANNNLEGEVPNQLCRLK 379
              F    ++  L LS +  S              + L  L L  N +     +    L 
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 380 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG 439
            L ++DL  N +  ++ G                          L  ++ + LS NK   
Sbjct: 406 HLEVLDLGLNEIGQELTG----QEWRG-----------------LENIFEIYLSYNKYLQ 444

Query: 440 EIPPQIGKLTSIRALNFSHNNLTGV--IPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN 497
                   + S++ L      L  V   P  F  L+ +  LD+S NN+       L  L 
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 498 VLAVFSVAHNNLS 510
            L +  + HNNL+
Sbjct: 505 KLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  215 bits (549), Expect = 2e-61
 Identities = 105/559 (18%), Positives = 189/559 (33%), Gaps = 60/559 (10%)

Query: 5   FSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQH 64
             L        L+      N+I         +     L+ ++LS + I    P   +   
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 65  DLEYVDFSDSNLKGEFPNWLLE--NNTNLNTLVLRNNSLSGPFRMPIQ--PHWHLDTLHV 120
            L  +  ++  L       L     NT++  L L N+ LS             +L  L +
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG---- 176
           S N            + P+L Y  L  N+       S+  + ++++L+L  +        
Sbjct: 256 SYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 177 ----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY-----CTGEI 227
               +I +        LE+L + +N + G        L  L  L L  ++      T E 
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 228 PKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP-LEFCQLNYLE 286
             SL++ SPL  L ++ N +          L  L  + + +N +   +   E+  L  + 
Sbjct: 375 FVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 287 ILDLSENNISGTLP-SCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTLDLSYNSFS 344
            + LS N        S +   ++Q++ L +  L         F    ++  LDLS N+ +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 345 GNIPYWIERLTRLRYLILANNNLE--------GEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
                 +E L +L  L L +NNL         G     L  L  L +++L +N       
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNF 456
               +                      L ++  +DL  N L            S+++LN 
Sbjct: 554 EVFKD----------------------LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 457 SHNNLTGVIPVSFS-NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
             N +T V    F    + +  LD+ +N  +         +N +       N     IPE
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI-------NETHTNIPE 644

Query: 516 WTAQFTTFKEDSYEGNPLL 534
            ++ +       Y G P+ 
Sbjct: 645 LSSHYLCNTPPHYHGFPVR 663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  200 bits (510), Expect = 6e-56
 Identities = 90/468 (19%), Positives = 170/468 (36%), Gaps = 64/468 (13%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
            E  D S   L  + P+ L    TN+  L L +N L                  +    F
Sbjct: 6   HEVADCSHLKLT-QVPDDLP---TNITVLNLTHNQLR----------------RLPAANF 45

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG 185
                      + +L  L++  N  +   P     +  LK L+L HN+L+  + +     
Sbjct: 46  TR---------YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAF 95

Query: 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
           C NL  L L  NS+        +  + L  L L  N  +     +      L+ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 246 NLYGNIPAWLG--NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS-- 301
            +       L     SSL  + ++ N ++   P  F  +  L  L L+   +  +L    
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 302 --CSSHSTIQQVHLSKNMLYGPLKYGTFFN--RSSIVTLDLSYNSFSGNIPYWIERLTRL 357
               ++++I+ + LS + L       TF     +++  LDLSYN+ +         L +L
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 358 RYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC----LDNTSLHNNGDNDGS 413
            Y  L  NN++    + L  L  +R ++L  +     I       +D+ S          
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW------- 327

Query: 414 SAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN--NLTGVIPVSFSN 471
                     L  +  +++  N + G        L +++ L+ S++  +L  +   +F +
Sbjct: 328 ----------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 472 LKQV--ESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWT 517
           L       L+++ N ++         L  L V  +  N +  ++    
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (481), Expect = 7e-52
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 71/422 (16%)

Query: 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH 171
               +    S       +P ++      +  LNL+ N       ++    + L  LD+  
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 172 NQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
           N ++   PE        L+ L L  N L                        +    K+ 
Sbjct: 59  NTISKLEPELCQ-KLPMLKVLNLQHNEL------------------------SQLSDKTF 93

Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLS 291
           + C+ L  L++  N++            +L  + ++ N L         QL  L+ L LS
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 292 ENNISGTLP---SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
            N I           ++S+++++ LS N +      G F     +  L L+      ++ 
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 349 YWI---ERLTRLRYLILANNNLEGEVPNQL--CRLKQLRLIDLSNNNLFGQIPGCLDN-T 402
             +      T +R L L+N+ L           +   L ++DLS NNL            
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN--- 459
            L                           L  N +       +  L ++R LN   +   
Sbjct: 273 QLEY-----------------------FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 460 ------NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKI 513
                 +L  +   SF  LK +E L++  N++ G        L  L   S++++  S + 
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 514 PE 515
             
Sbjct: 370 LT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  161 bits (410), Expect = 2e-42
 Identities = 76/460 (16%), Positives = 138/460 (30%), Gaps = 58/460 (12%)

Query: 1   FQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFL 60
             +   L     N+ ++  S   +++   S ++        L  + LS + ++       
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 61  YNQHDLEYVDFSDSNLKGEFPNWL--------------------------------LENN 88
                LEY     +N++  F + L                                 +  
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQ-GNIPLEI--GVYFPRLVYLNL 145
             L  L + +N + G          +L  L +S +F     +  E    +    L  LNL
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 146 SRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG---Q 202
           ++N  +     +   +  L+ LDL  N++  E+      G  N+  + LS N        
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 203 LFYKKIYLRKLARLHLDANYCTG--EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSS 260
            F     +  L RL L           P        L  L +S+NN+       L  L  
Sbjct: 449 SFAL---VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 261 LNDIMMAINHLQ--------GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHST-IQQV 311
           L  + +  N+L         G        L++L IL+L  N               ++ +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-LTRLRYLILANNNLEGE 370
            L  N L   L    F N+ S+ +L+L  N  +             L  L +  N  +  
Sbjct: 566 DLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 371 VPNQLCRLKQLRLIDLSNNNLFGQI----PGCLDNTSLHN 406
             +    +  +     +   L        P       +  
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRL 664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 27/163 (16%)

Query: 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNDGS 413
                   ++  L  +VP+ L     + +++L++N L           + L +       
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTS------- 53

Query: 414 SAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLK 473
                           +D+  N ++   P    KL  ++ LN  HN L+ +   +F+   
Sbjct: 54  ----------------LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 474 QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEW 516
            +  L +  N++        V+   L    ++HN LS      
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (567), Expect = 2e-67
 Identities = 79/402 (19%), Positives = 130/402 (32%), Gaps = 122/402 (30%)

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG-CFNLEYLVLSENSLHG 201
            +     + G +  +      +  LDLS   L    P    +     L +L +       
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG------ 84

Query: 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSL 261
                              N   G IP +++  + L  LY++  N+ G IP +L  + +L
Sbjct: 85  -----------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 262 NDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGP 321
             +  + N L G +P     L  L  +    N ISG +P                     
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS------------------- 168

Query: 322 LKYGTFFNRSSIVT-LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQ 380
                + + S + T + +S N  +G IP     L  L ++ L+ N LEG+        K 
Sbjct: 169 -----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222

Query: 381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440
            + I L+ N+L   +                                             
Sbjct: 223 TQKIHLAKNSLAFDLG-------------------------------------------- 238

Query: 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLA 500
              ++G   ++  L+  +N + G +P   + LK + SL+VS+NNL G+IP          
Sbjct: 239 ---KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--------- 286

Query: 501 VFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDC 542
                                 F   +Y  N  LCG PLP C
Sbjct: 287 ----------------GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (445), Expect = 5e-50
 Identities = 74/317 (23%), Positives = 116/317 (36%), Gaps = 70/317 (22%)

Query: 60  LYNQHDLEYVDFSDSNLKGEFP-NWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHW---- 113
               + +  +D S  NL   +P    L N   LN L +   N+L GP    I P      
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLT 101

Query: 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ 173
            L  L+++     G IP  +      LV L+ S N  +G++P SI  + +L  +    N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 174 LTGEIPEHLVIGCFNL----EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229
           ++G IP+       +       + +S N L                        TG+IP 
Sbjct: 161 ISGAIPDSY----GSFSKLFTSMTISRNRL------------------------TGKIPP 192

Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
           + +N + L  + +S N L G+     G+  +   I +A N L   +  +      L  LD
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250

Query: 290 LSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY 349
           L  N I GTLP                                + +L++S+N+  G IP 
Sbjct: 251 LRNNRIYGTLPQ------------------------GLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 350 WIERLTRLRYLILANNN 366
               L R      ANN 
Sbjct: 287 -GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (416), Expect = 8e-46
 Identities = 60/277 (21%), Positives = 105/277 (37%), Gaps = 55/277 (19%)

Query: 42  LESVKLSGS-GIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           L  + + G   +    P  +     L Y+  + +N+ G  P++ L     L TL    N+
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNA 136

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           LSG                         +P  I    P LV +    N  +G+IP S G 
Sbjct: 137 LSGT------------------------LPPSIS-SLPNLVGITFDGNRISGAIPDSYGS 171

Query: 161 MNSL-KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLD 219
            + L   + +S N+LTG+IP        NL ++ LS N L                    
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSRNML-------------------- 209

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
                G+      +    + ++++ N+L  ++   +G   +LN + +  N + G +P   
Sbjct: 210 ----EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316
            QL +L  L++S NN+ G +P   +         + N
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (367), Expect = 4e-39
 Identities = 60/265 (22%), Positives = 100/265 (37%), Gaps = 55/265 (20%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           QL  + ++ + +    P FL     L  +DFS + L G  P   + +  NL  +    N 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR 160

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           +SG                         IP   G +      + +SRN   G IP +  +
Sbjct: 161 ISGA------------------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
           +N L F+DLS N L G+          N + + L++NSL                     
Sbjct: 197 LN-LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSL--------------------- 233

Query: 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
                ++   +     L GL + +N +YG +P  L  L  L+ + ++ N+L G IP    
Sbjct: 234 ---AFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG- 288

Query: 281 QLNYLEILDLSENNI--SGTLPSCS 303
            L   ++   + N       LP+C+
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (335), Expect = 1e-34
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE--VPNQLCRLKQLRLIDLSN-NNL 391
           T D    ++ G +     +  R+  L L+  NL     +P+ L  L  L  + +   NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSI 451
            G IP  +                        L +++ + ++   ++G IP  + ++ ++
Sbjct: 90  VGPIPPAIAK----------------------LTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVF-SVAHNNLS 510
             L+FS+N L+G +P S S+L  +  +    N ++G IP      + L    +++ N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 511 GKIPE 515
           GKIP 
Sbjct: 188 GKIPP 192

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (560), Expect = 3e-63
 Identities = 63/511 (12%), Positives = 145/511 (28%), Gaps = 87/511 (17%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L    ++      +  K          +    +N+       ++   T L    + N+ 
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVM-RLTKLRQFYMGNSP 217

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
                      + + +              L+       L  + +        +P+ +  
Sbjct: 218 FVAENICEAWENENSEYAQ-----QYKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 161 MNSLKFLDLSHNQLTG--EIPEHLVI-----GCFNLEYLVLSENSLHGQLFYKKIYLRKL 213
           +  ++ ++++ N+     ++ +             ++ + +  N+L              
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK------------- 318

Query: 214 ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG 273
                     T  +  SL     L  L    N L G +PA  G+   L  + +A N +  
Sbjct: 319 ----------TFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367

Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQ---VHLSKNMLYGPLKYG----- 325
                      +E L  + N +   +P+     ++     +  S N +            
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 326 -TFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG-------EVPNQLCR 377
            T F   ++ +++LS N  S          + L  + L  N L         +       
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 378 LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKL 437
              L  IDL  N L  ++      T+L                      + G+DLS N  
Sbjct: 487 TYLLTSIDLRFNKL-TKLSDDFRATTLPY--------------------LVGIDLSYNSF 525

Query: 438 TGEIPPQIGKLTSIRAL------NFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
           +   P Q    ++++        +   N      P   +    +  L +  N++   +  
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

Query: 492 QLVELNVLAVFSVAHNNLSGKIPEWTAQFTT 522
           ++     ++V  +  N        +   +  
Sbjct: 584 KI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  201 bits (513), Expect = 1e-56
 Identities = 62/478 (12%), Positives = 133/478 (27%), Gaps = 82/478 (17%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPH----WHLDTLHVS 121
           +  +        G  P+  +   T L  L L ++      R+            +     
Sbjct: 83  VTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 122 KNFFQGNIPLEIG-VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE 180
           +  +Q           F  L+   ++ +    SI  S         +    N +T  + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 181 HLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240
            + +    L    +  +    +   +                          N   L  +
Sbjct: 201 AV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDV 254

Query: 241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHL--------QGPIPLEFCQLNYLEILDLSE 292
            + +      +P +L  L  +  I +A N                +      ++I+ +  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 293 NNI-SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI 351
           NN+ +  + +                        +      +  L+  YN   G +P   
Sbjct: 315 NNLKTFPVET------------------------SLQKMKKLGMLECLYNQLEGKLPA-F 349

Query: 352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDND 411
               +L  L LA N +     N     +Q+  +  ++N L   IP   D  S+       
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSV----- 403

Query: 412 GSSAPTRYKGKPLNKMYGVDLSCNKLTG-------EIPPQIGKLTSIRALNFSHNNLTGV 464
                          M  +D S N++          + P   K  ++ ++N S+N ++  
Sbjct: 404 ---------------MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 465 IPVSFSNLKQVESLDVSYNNLNG-------KIPPQLVELNVLAVFSVAHNNLSGKIPE 515
               FS    + S+++  N L                   +L    +  N L+    +
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  195 bits (497), Expect = 2e-54
 Identities = 66/487 (13%), Positives = 135/487 (27%), Gaps = 99/487 (20%)

Query: 38  PKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLR 97
                E+     +  + T      N  DL  V+  +     + P +L +    +  + + 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVA 281

Query: 98  NNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDF-NGSIPS 156
            N                      +         +  V   ++  + +  N+     + +
Sbjct: 282 CNRGIS----------------GEQLKDDWQALADAPV-GEKIQIIYIGYNNLKTFPVET 324

Query: 157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG---QLFYKKIYLRKL 213
           S+  M  L  L+  +NQL G++P         L  L L+ N +               ++
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGF---TEQV 379

Query: 214 ARLHLDANYCTGEIPKSLS--NCSPLEGLYMSDNNLYG-------NIPAWLGNLSSLNDI 264
             L    N     IP      + S +  +  S N +          +        +++ I
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 265 MMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
            ++ N +       F   + L  ++L  N ++                + KN L      
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---------------IPKNSLKDEN-- 481

Query: 325 GTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRL 383
             F N   + ++DL +N  +     +    L  L  + L+ N+     P Q      L+ 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540

Query: 384 IDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPP 443
             + N                                          D   N+   E P 
Sbjct: 541 FGIRNQR----------------------------------------DAQGNRTLREWPE 560

Query: 444 QIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS 503
            I    S+  L    N++  V      N+     LD+  N         +       ++ 
Sbjct: 561 GITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 504 VAHNNLS 510
           + ++   
Sbjct: 618 LFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  180 bits (458), Expect = 5e-49
 Identities = 54/382 (14%), Positives = 108/382 (28%), Gaps = 72/382 (18%)

Query: 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
           R+  L+L     +G +P +IG +  L+ L L  +            G          +  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 199 LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLS--NCSPLEGLYMSDNNLYGNIPAWLG 256
                                  +            + S L    ++ +    +I     
Sbjct: 142 R---------------------MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 257 NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316
                  I    N++   +     +L  L    +  +                       
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC--------------- 224

Query: 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC 376
                          +    +  Y           + L  L  + + N     ++P  L 
Sbjct: 225 --------------EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 377 RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK 436
            L +++LI+++ N          D  +L +                   K+  + +  N 
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPV--------------GEKIQIIYIGYNN 316

Query: 437 L-TGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495
           L T  +   + K+  +  L   +N L G +P +F +  ++ SL+++YN +   IP     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCG 374

Query: 496 -LNVLAVFSVAHNNLSGKIPEW 516
               +   S AHN L   IP  
Sbjct: 375 FTEQVENLSFAHNKLKY-IPNI 395

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 20/220 (9%), Positives = 57/220 (25%), Gaps = 28/220 (12%)

Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRL 383
            G      +    +   + +       +    R+  L L      G VP+ + +L +L +
Sbjct: 50  QGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEV 109

Query: 384 IDLSNNNLFG--------QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCN 435
           + L ++             I   + +        +   +       +  + +    ++ +
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

Query: 436 KLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495
                I            +    NN+T  +  +   L ++    +  +    +   +  E
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 496 LNVLAV-------------------FSVAHNNLSGKIPEW 516
                                      V +     K+P +
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (521), Expect = 5e-58
 Identities = 90/493 (18%), Positives = 161/493 (32%), Gaps = 49/493 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           +L+ + LS   I         +   L  +  + + ++           ++L  LV    +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETN 111

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           L+     PI     L  L+V+ N  Q     E       L +L+LS N       + +  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 161 MNSLKF----LDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIY-LRKLAR 215
           ++ +      LDLS N +    P         L  L L  N     +    I  L  L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 216 LHLDANYCTGEI---PKSLSNCSPLEGLYMSDNNL------YGNIPAWLGNLSSLNDIMM 266
             L       E        S    L  L + +  L        +I      L++++   +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 267 AINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326
               ++      +      + L+L         P+    S ++++  + N         +
Sbjct: 290 VSVTIERVKDFSY--NFGWQHLELVNCKFGQ-FPTLKLKS-LKRLTFTSNKGGNAF---S 342

Query: 327 FFNRSSIVTLDLSYN--SFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI 384
             +  S+  LDLS N  SF G         T L+YL L+ N +   + +    L+QL  +
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 385 DLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ 444
           D  ++NL       +                        L  +  +D+S           
Sbjct: 402 DFQHSNLKQMSEFSV---------------------FLSLRNLIYLDISHTHTRVAFNGI 440

Query: 445 IGKLTSIRALNFSHNNLTGVI-PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS 503
              L+S+  L  + N+      P  F+ L+ +  LD+S   L    P     L+ L V +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 504 VAHNNLSGKIPEW 516
           ++HNN        
Sbjct: 501 MSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (516), Expect = 3e-57
 Identities = 85/512 (16%), Positives = 170/512 (33%), Gaps = 48/512 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L ++ L+G+ I +           L+ +   ++NL        + +   L  L + +N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNL 135

Query: 101 L-SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYF---PRLVYLNLSRNDFNGSIPS 156
           + S           +L+ L +S N  Q     ++ V        + L+LS N  N   P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI------YL 210
           +  ++  L  L L +N  +  + +  + G   LE   L       +   +K        L
Sbjct: 196 AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 211 RKLARLHLDANYC---TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMA 267
             L        Y      +I    +  + +    +    +                + + 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312

Query: 268 INHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGT 326
                    L+   L  L        N      S     +++ + LS+N L        +
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ-LCRLKQLRLID 385
            F  +S+  LDLS+N     +      L +L +L   ++NL+          L+ L  +D
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI 445
           +S+ +      G  +                       L+ +  + ++ N       P I
Sbjct: 428 ISHTHTRVAFNGIFNG----------------------LSSLEVLKMAGNSFQENFLPDI 465

Query: 446 -GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV 504
             +L ++  L+ S   L  + P +F++L  ++ L++S+NN           LN L V   
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 505 AHNNLSGKIPEWTAQFTTF-KEDSYEGNPLLC 535
           + N++     +    F +     +   N   C
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (500), Expect = 5e-55
 Identities = 85/450 (18%), Positives = 158/450 (35%), Gaps = 31/450 (6%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144
           +E   N+    +  N    P  +P         L +S N  +          FP L  L+
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPLRHLGSYSFF-SFPELQVLD 58

Query: 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLF 204
           LSR +       +   ++ L  L L+ N +          G  +L+ LV  E +L     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLEN 117

Query: 205 YKKIYLRKLARLHLDANY-CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLND 263
           +   +L+ L  L++  N   + ++P+  SN + LE L +S N +       L  L  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 264 IMMAI----NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS----SHSTIQQVHLSK 315
           + +++    N +    P  F ++  L  L L  N  S  +        +   + ++ L +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFS------GNIPYWIERLTRLRYLILANNNLEG 369
               G L+         +  L +     +       +I      LT +    L +  +E 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 370 EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYG 429
                       + ++L N          L +        N G +A +      L  +  
Sbjct: 297 VKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEF 351

Query: 430 VDLSCNKLT--GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG 487
           +DLS N L+  G         TS++ L+ S N +   +  +F  L+Q+E LD  ++NL  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 488 KIPPQ-LVELNVLAVFSVAHNNLSGKIPEW 516
                  + L  L    ++H +        
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (481), Expect = 2e-52
 Identities = 86/457 (18%), Positives = 151/457 (33%), Gaps = 30/457 (6%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
             + +D S + L+    ++   +   L  L L    +        Q   HL TL ++ N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
            Q             L  L     +        IG + +LK L+++HN +          
Sbjct: 88  IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 185 GCFNLEYLVLSENSLHGQLFYKKIYLRKL----ARLHLDANYCTGEIPKSLSNCSPLEGL 240
              NLE+L LS N +          L ++      L L  N      P +      L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKL 205

Query: 241 YMSDNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
            + +N    N+    +  L+ L    + +   +    LE    + LE L           
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL----------- 254

Query: 300 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRY 359
                + TI++  L+    Y       F   +++ +  L   +               ++
Sbjct: 255 ----CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQH 308

Query: 360 LILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-GCLDNTSLHNNGDNDGSSAPTR 418
           L L N         +L  LK+L        N F ++    L+   L  NG +        
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 419 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS-FSNLKQVES 477
             G     +  +DLS N +   +      L  +  L+F H+NL  +   S F +L+ +  
Sbjct: 369 DFG--TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 478 LDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514
           LD+S+ +           L+ L V  +A N+      
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (481), Expect = 2e-52
 Identities = 83/525 (15%), Positives = 168/525 (32%), Gaps = 50/525 (9%)

Query: 10  FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHAT-FPKFLYNQHDLEY 68
           F   S L+        +   S  +  +     L+ + ++ + I +   P++  N  +LE+
Sbjct: 96  FSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 69  VDFSDSNLKGEFPNWL--LENNTNLN-TLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           +D S + ++  +   L  L     LN +L L  N ++       +    L  L +  NF 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFD 212

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK--------FLDLSHNQLTGE 177
             N+          L    L   +F         D ++L+           L++     +
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 178 IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPL 237
               L     N+    L   ++         Y      L L            L +   L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 238 EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ--GPIPLEFCQLNYLEILDLSENNI 295
                +  +  G       +L SL  + ++ N L   G           L+ LDLS N +
Sbjct: 331 -----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 296 SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT 355
                +      ++ +    + L    ++  F +  +++ LD+S+             L+
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 356 RLRYLILANNNLEGEV-PNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSS 414
            L  L +A N+ +    P+    L+ L  +DLS   L    P   ++             
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------- 492

Query: 415 APTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNL-K 473
                    L+ +  +++S N            L S++ L++S N++         +   
Sbjct: 493 ---------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 474 QVESLDVSYNNLNGKIPPQ--LVELNVLAVFSVAHNNLSGKIPEW 516
            +  L+++ N+       Q  L  +       V    +    P  
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (476), Expect = 1e-51
 Identities = 92/482 (19%), Positives = 151/482 (31%), Gaps = 55/482 (11%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYV----DFSDSNLKGEFPNWLLENNTNLNTLVL 96
            LE + LS + I + +   L   H +  +    D S + +    P         L+ L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTL 207

Query: 97  RNNSLSGPF-RMPIQPHWHLDTLHVSKNFFQGNIPLE--IGVYFPRLVYLNLSRNDFN-- 151
           RNN  S    +  IQ    L+   +    F+    LE         L  L +        
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 152 ----GSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK 207
                 I      + ++    L    +            F  ++L L           K 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKL 324

Query: 208 IYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY--GNIPAWLGNLSSLNDIM 265
             L+      L      G    S  +   LE L +S N L   G         +SL  + 
Sbjct: 325 KSLK-----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 266 MAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHSTIQQVHLSKNMLYGPLK 323
           ++ N +   +   F  L  LE LD   +N+          S   +  + +S         
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AF 437

Query: 324 YGTFFNRSSIVTLDLSYNSFSGNI-PYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLR 382
            G F   SS+  L ++ NSF  N  P     L  L +L L+   LE   P     L  L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 383 LIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIP 442
           ++++S+NN F                               LN +  +D S N +     
Sbjct: 498 VLNMSHNNFFSLDTFPYKC----------------------LNSLQVLDYSLNHIMTSKK 535

Query: 443 PQIGKL-TSIRALNFSHNNLTGVIPVS--FSNLKQVESLDVSYNNLNGKIPPQLVELNVL 499
            ++    +S+  LN + N+             +K    L V    +    P     + VL
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

Query: 500 AV 501
           ++
Sbjct: 596 SL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (284), Expect = 2e-26
 Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 29/277 (10%)

Query: 6   SLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHD 65
           +     +   L+      N +  +   S S      L+ + LS +G+      FL  +  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ- 397

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           LE++DF  SNLK      +  +  NL  L + +      F         L+ L ++ N F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG 185
           Q N   +I      L +L+LS+       P++   ++SL+ L++SHN             
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-C 516

Query: 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP-LEGLYMSD 244
             +L+ L  S N +                             + L +    L  L ++ 
Sbjct: 517 LNSLQVLDYSLNHI------------------------MTSKKQELQHFPSSLAFLNLTQ 552

Query: 245 NNLYGNIPA--WLGNLSSLNDIMMAINHLQGPIPLEF 279
           N+         +L  +     +++ +  ++   P + 
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  206 bits (525), Expect = 4e-57
 Identities = 71/516 (13%), Positives = 146/516 (28%), Gaps = 92/516 (17%)

Query: 59  FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 118
            L N   +  +  +    KG  P+  +   T L  L    +S +   R+        D  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-------------------------- 152
              K+  + +       Y  RL   +L ++  N                           
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 153 --SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYL 210
              I  +I  +  L+ +  +++  T +          + E         +         L
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNL 490

Query: 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG---------NIPAWLGNLSSL 261
           + L  + L       ++P  L +   L+ L ++ N              +         +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 262 NDIMMAINHLQG-PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG 320
               M  N+L+  P      ++  L +LD   N +   L +  ++  +  + L  N +  
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE 609

Query: 321 PLKYGTFFNRSSIVTLDLSYNSFSGNIP--YWIERLTRLRYLILANNNLEGEVPNQLC-- 376
            +          +  L  S+N     IP  +  + +  +  +  + N +  E  N  C  
Sbjct: 610 -IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 377 ---RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLS 433
              +      + LS N +                                 + +  + LS
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFAT----------------------GSPISTIILS 705

Query: 434 CNKLT-------GEIPPQIGKLTSIRALNFSHNNLTGVIP-VSFSNLKQVESLDVSYNNL 485
            N +T                   +  ++   N LT +      + L  + ++DVSYN  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

Query: 486 NGKIPP------QLVELNVLAVFSVAHNNLSGKIPE 515
           +   P       QL    +        N +  + P 
Sbjct: 766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  196 bits (500), Expect = 7e-54
 Identities = 70/477 (14%), Positives = 132/477 (27%), Gaps = 85/477 (17%)

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 148
           T L  +   N+  +             +  +        N  L        L  + L   
Sbjct: 448 TKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWS-NLKDLTDVELYNC 501

Query: 149 DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI--------GCFNLEYLVLSENSLH 200
                +P  + D+  L+ L+++ N+                       ++   +  N+L 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 201 GQLFYKKI-YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLG-NL 258
                  +  + KL  L    N     +  +      L  L +  N +   IP       
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI-EEIPEDFCAFT 618

Query: 259 SSLNDIMMAINHLQG-PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNM 317
             +  +  + N L+  P       +  +  +D S N I     + S              
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD--------- 669

Query: 318 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE-------GE 370
                     +   +  T+ LSYN             + +  +IL+NN +          
Sbjct: 670 ----------YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV 430
                     L  IDL  N L          TSL ++                L  +  +
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKL----------TSLSDDFRATT-----------LPYLSNM 758

Query: 431 DLSCNKLTGEIPPQIGKLTSIRALNFSH------NNLTGVIPVSFSNLKQVESLDVSYNN 484
           D+S N  +   P Q    + ++A    H      N +    P   +    +  L +  N+
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 485 LNGKIPPQLVELNVLAVFSVAHNNL-----SGKIPEWTAQFTTFKEDSYEGNPLLCG 536
           +  K+  +L     L +  +A N       +   P   A         Y+    + G
Sbjct: 818 IR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL---LYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (454), Expect = 9e-48
 Identities = 76/517 (14%), Positives = 158/517 (30%), Gaps = 87/517 (16%)

Query: 72  SDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPL 131
            + ++ G+ P   L+NN  +  L L      G                         +P 
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR------------------------VPD 341

Query: 132 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191
            IG     L  L+   +    S      +  +    +   +++     +  +     L  
Sbjct: 342 AIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANY------CTGEIPKSLSNCSPLEGLYMSDN 245
             L +++++     +   ++K +R+ L              I K++   + L+ +Y +++
Sbjct: 401 SDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 246 NL-------------------YGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLE 286
                                Y N      NL  L D+ +        +P     L  L+
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 287 ILDLSENNISGTLPSCSSHSTI----------QQVHLSKNMLYGPLKYGTFFNRSSIVTL 336
            L+++ N         +  + +          Q  ++  N L       +      +  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCR-LKQLRLIDLSNNNLFGQI 395
           D  +N    ++        +L  L L  N +E E+P   C    Q+  +  S+N L   I
Sbjct: 579 DCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYI 634

Query: 396 PGCLDNTSL---------HNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG 446
           P   +  S+         +N   ++G +               V LS N++         
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 447 KLTSIRALNFSHNNLT-------GVIPVSFSNLKQVESLDVSYNNLNGKIPPQLV--ELN 497
             + I  +  S+N +T            ++ N   + ++D+ +N L   +        L 
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLP 753

Query: 498 VLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLL 534
            L+   V++N  S   P      +  K          
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  153 bits (387), Expect = 4e-39
 Identities = 64/376 (17%), Positives = 120/376 (31%), Gaps = 53/376 (14%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWL--------LENNTNLN 92
            L  V+L         P FLY+  +L+ ++ + +                   +    + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 93  TLVLRNNSLSG-PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN 151
              +  N+L   P    +Q    L  L    N  + ++    G    +L  L L  N   
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE 608

Query: 152 GSIPSSIG-DMNSLKFLDLSHNQLTGEIPEHLVIG-CFNLEYLVLSENSLHGQ-----LF 204
             IP       + ++ L  SHN+L   IP        + +  +  S N +  +       
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 205 YKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL-------YGNIPAWLGN 257
                    + + L  N       +  +  SP+  + +S+N +                N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 258 LSSLNDIMMAINHLQG-PIPLEFCQLNYLEILDLSENNISGTLPSCSSHST-IQQVHLSK 315
              L  I +  N L           L YL  +D+S N  S + P+   +S+ ++   +  
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH 785

Query: 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL 375
                                D   N      P  I     L  L + +N++  +V  +L
Sbjct: 786 Q-------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

Query: 376 CRLKQLRLIDLSNNNL 391
               QL ++D+++N  
Sbjct: 826 --TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (255), Expect = 9e-23
 Identities = 43/281 (15%), Positives = 89/281 (31%), Gaps = 29/281 (10%)

Query: 258 LSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNM 317
           L+   ++ + +      I          E LD           + + HS     +   +M
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDM 310

Query: 318 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCR 377
                      N   +  L L+     G +P  I +LT L+ L    ++           
Sbjct: 311 WGDQPGV-DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 378 LKQLRLIDLSNN-------NLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN-KMYG 429
                + +   +        +F      L+ + L  +  N         K   ++ K   
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGV-------------------IPVSFS 470
           +    N++T  I   I +LT ++ + F+++  T                       +S+S
Sbjct: 430 IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 471 NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511
           NLK +  +++       ++P  L +L  L   ++A N    
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.0 bits (231), Expect = 9e-20
 Identities = 24/212 (11%), Positives = 59/212 (27%), Gaps = 36/212 (16%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
             +   + +       ++   R+  L LA    +G VP+ + +L +L+++    ++    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 395 IPGCLDNTSLHNNGDNDGSSAPTRYK---GKPLNKMYGVDLSCNKLTG------------ 439
                D     +  +         YK        ++   DL  + +              
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 440 ----------------EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
                            I   I +LT ++ + F+++  T                +  Y 
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYA 477

Query: 484 NLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
                       L  L    + +     ++P+
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (515), Expect = 4e-57
 Identities = 89/514 (17%), Positives = 180/514 (35%), Gaps = 42/514 (8%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           +L+++ L+ + +       L     L+++ F  + +        L N   L +L L +N 
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNH 140

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIG 159
           +S        P   L  L    N        ++        + LNL+ ND    I     
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAF 199

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLV-IGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARL 216
           D    + L+    Q    I + L      +L      +          ++ +    +  +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276
           +L  +Y       +    S L+ L ++  +L   +P+ L  LS+L  ++++ N  +    
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 277 LEFCQLNYLEILDLSENNISGTLPSCSSH--STIQQVHLSKNMLYG-PLKYGTFFNRSSI 333
           +       L  L +  N     L +        ++++ LS + +           N S +
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLF 392
            +L+LSYN          +   +L  L LA   L+  +  +    L  L++++LS++ L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 393 GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI---PPQIGKLT 449
                  D                       L  +  ++L  N            +  L 
Sbjct: 439 ISSEQLFDG----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
            +  L  S  +L+ +   +F++LK +  +D+S+N L       L  L  +   ++A N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

Query: 510 SGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
           S  +P      +  +  +   NPL C      C 
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC-----TCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (468), Expect = 1e-50
 Identities = 82/466 (17%), Positives = 151/466 (32%), Gaps = 33/466 (7%)

Query: 64  HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN 123
           +  E ++FS + L     N       NL  L L    +        Q    LDTL ++ N
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 124 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV 183
                +          L +L   +   +      + +  +L+ L L  N ++  I     
Sbjct: 92  PLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKG 149

Query: 184 IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT-GEIPKSLSNCSPLEGLYM 242
                L+ L    N++H         L++   L L+ N      I     + +  + L  
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 243 SDNNLYGNIPAWLGN--LSSLNDIMMAINHLQGPIPLEF--CQLNYLEILDLSENNISGT 298
                   I   L N  + SL          +   P  F       +E ++L ++     
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 299 LPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRL 357
             +     S +Q++ L+   L            S++  L LS N F             L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 358 RYLILANNNLEGEV-PNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAP 416
            +L +  N    E+    L  L+ LR +DLS++++         N  L N          
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD---CCNLQLRN---------- 374

Query: 417 TRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS-FSNLKQV 475
                  L+ +  ++LS N+          +   +  L+ +   L      S F NL  +
Sbjct: 375 -------LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 476 ESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFT 521
           + L++S++ L+         L  L   ++  N+      + T    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 4e-43
 Identities = 68/381 (17%), Positives = 129/381 (33%), Gaps = 45/381 (11%)

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG- 201
            N      N  IP ++   NS + L+ S N L   I         NL +L L+   ++  
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 202 --QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLS 259
               F       +L  L L AN        +LS    L+ L+     +       L N  
Sbjct: 73  HEDTFQS---QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 260 SLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC---SSHSTIQQVHLSKN 316
           +L  + +  NH+      +      L++LD   N I             +T   ++L+ N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE--RLTRLRYLILANNNLEGEVPNQ 374
            + G       F+ +   +L+         I   ++   +  L      + + E   P  
Sbjct: 190 DIAGIEP--GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 375 LCRLKQLRL--IDLSNNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVD 431
              L ++ +  I+L  +  F          + L                         +D
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE-----------------------LD 284

Query: 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
           L+   L+ E+P  +  L++++ L  S N    +  +S SN   +  L +  N    ++  
Sbjct: 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 492 QLVE-LNVLAVFSVAHNNLSG 511
             +E L  L    ++H+++  
Sbjct: 344 GCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (342), Expect = 9e-34
 Identities = 71/396 (17%), Positives = 131/396 (33%), Gaps = 16/396 (4%)

Query: 3   IPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYN 62
           + F          L + + E  +    S +      +  +ES+ L             + 
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 63  QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK 122
              L+ +D + ++L  E P+  L   + L  LVL  N      ++       L  L +  
Sbjct: 277 FSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS--IPSSIGDMNSLKFLDLSHNQLTGEIPE 180
           N  +  +          L  L+LS +D   S      + +++ L+ L+LS+N+    +  
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKT 393

Query: 181 HLVIGCFNLEYLVLSENSLHGQLFYKKI-YLRKLARLHLDANYCTGEIPKSLSNCSPLEG 239
                C  LE L L+   L  +        L  L  L+L  +       +       L+ 
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 240 LYMSDNNLYGNI---PAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
           L +  N+           L  L  L  ++++   L       F  L  +  +DLS N ++
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 297 GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR 356
            +     SH     ++L+ N +   +        S   T++L  N               
Sbjct: 514 SSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTC-----SNIY 567

Query: 357 LRYLILANNNLEGEVPNQLCR-LKQLRLIDLSNNNL 391
                  N     +  + LC     LR + LS+  L
Sbjct: 568 FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 25/181 (13%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
           T +      +  IP  +        L  + N L         RL  L  +DL+   ++  
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRAL 454
                 +                       +++  + L+ N L       +    +++ L
Sbjct: 73  HEDTFQS----------------------QHRLDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 455 NFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514
            F    ++ +  +   N K +ESL +  N+++    P+      L V    +N +     
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 515 E 515
           E
Sbjct: 171 E 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
            +     L  EIP  +    S   L FS N L  +   +FS L  +  LD++   +    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 490 PPQLVELNVLAVFSVAHNNLSGKIPEW 516
                  + L    +  N L       
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETA 100

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  185 bits (472), Expect = 3e-51
 Identities = 85/514 (16%), Positives = 165/514 (32%), Gaps = 56/514 (10%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           +L+ + LS   I     K  +  H L  +  + + ++  F        T+L  LV     
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETK 115

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-------- 152
           L+     PI     L  L+V+ NF               LV+++LS N            
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 153 -------------------SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLV 193
                               I         L  L L  N  +  I +  +     L    
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 194 LSENSLHGQLFYKKI------YLRKLARLHLDANY--CTGEIPKSLSNCSPLEGLYMSDN 245
           L       +   +         L  +        Y     +        + +  + ++  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 246 NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSH 305
           ++       +        + +    L+         L +L+ L L+ N  S       + 
Sbjct: 296 SI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS-ISFKKVAL 349

Query: 306 STIQQVHLSKNMLYGPLKYGTFFNR--SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILA 363
            ++  + LS+N L       ++ +   +S+  LDLS+N     +      L  L++L   
Sbjct: 350 PSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQ 407

Query: 364 NNNLEGEVPNQ-LCRLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNGDNDGSSAP 416
           ++ L+          L++L  +D+S  N      G     +      +  N   D + + 
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 417 TRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVE 476
                     +  +DLS  +L          L  ++ LN SHNNL  +    ++ L  + 
Sbjct: 468 VF---ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 477 SLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
           +LD S+N +             LA F++ +N+++
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  166 bits (423), Expect = 2e-44
 Identities = 89/492 (18%), Positives = 153/492 (31%), Gaps = 50/492 (10%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
             + +D S + LK    ++   N + L  L L    +            HL  L ++ N 
Sbjct: 33  STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
            Q             L  L              IG + +LK L+++HN +          
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 185 GCFNLEYLVLSENSLHG----------QLFYKKIYLR-----------------KLARLH 217
              NL ++ LS N +            +     + L                  KL  L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 218 LDANYCTGEIPK-SLSNCSPLEGLYMSDNNLYGNI------PAWLGNLSSLNDIMMAINH 270
           L  N+ +  I K  L N + L    +               P+ +  L  +      + +
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 271 LQ--GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 328
                   ++F  L  +  + L+  +I   L     H   Q + + +      LK     
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQ----LKQFPTL 325

Query: 329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN--QLCRLKQLRLIDL 386
           +   + +L L+ N  S  I +    L  L YL L+ N L               LR +DL
Sbjct: 326 DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 387 SNNNLFGQIPGCLDNTSLH--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ 444
           S N         +    L   +   +             L K+  +D+S      +    
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 445 IGKLTSIRALNFSHNNLTGVIPVS-FSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS 503
              LTS+  L  + N+       + F+N   +  LD+S   L          L+ L + +
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 504 VAHNNLSGKIPE 515
           ++HNNL      
Sbjct: 504 MSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (396), Expect = 7e-41
 Identities = 71/406 (17%), Positives = 137/406 (33%), Gaps = 35/406 (8%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P +I         ++LS N        S  + + L++LDLS  ++     +    G  +
Sbjct: 26  VPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHH 81

Query: 189 LEYLVLSENSLHG---QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
           L  L+L+ N +       F     L  L  L              +     L+ L ++ N
Sbjct: 82  LSNLILTGNPIQSFSPGSFSG---LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 246 NLYG-NIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQL----NYLEILDLSENNISGTLP 300
            ++   +PA+  NL++L  + ++ N++Q     +   L         LD+S N I     
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 301 SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI------PYWIERL 354
                  + ++ L  N     +      N + +    L    F          P  +E L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 355 TRLRYLIL--ANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLH--NNGDN 410
             +          N   +   +   L  +  + L+  ++   +     +      +    
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRC 317

Query: 411 DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS 470
                PT      L  +  + L+ NK +  I  +   L S+  L+ S N L+     S+S
Sbjct: 318 QLKQFPT----LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 471 NLK--QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514
           +L    +  LD+S+N     +    + L  L      H+ L     
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  147 bits (373), Expect = 7e-38
 Identities = 61/375 (16%), Positives = 117/375 (31%), Gaps = 23/375 (6%)

Query: 39  KFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRN 98
                S+ +S + I     +       L  +    +          L+N   L+   L  
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 99  NSLSGPFRMPIQPHWHLD--------TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDF 150
                   + I     ++           ++      +  ++       +  ++L+    
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH-CLANVSAMSLAGVSI 297

Query: 151 NGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYL 210
                  +      + L +   QL       L      L+ L L+ N     + +KK+ L
Sbjct: 298 KY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNKG--SISFKKVAL 349

Query: 211 RKLARLHLDANYCTGEIPKSLSN--CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAI 268
             L+ L L  N  +     S S+   + L  L +S N     + A    L  L  +    
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH 408

Query: 269 NHLQGPIPLE-FCQLNYLEILDLSENNISGTLP-SCSSHSTIQQVHLSKNMLYGPLKYGT 326
           + L+       F  L  L  LD+S  N            +++  + ++ N          
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386
           F N +++  LDLS            + L RL+ L +++NNL     +   +L  L  +D 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 387 SNNNLFGQIPGCLDN 401
           S N +          
Sbjct: 529 SFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  124 bits (314), Expect = 3e-30
 Identities = 59/375 (15%), Positives = 128/375 (34%), Gaps = 51/375 (13%)

Query: 152 GSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLR 211
           GS+   I  + ++        +L+ ++P+ +     + + + LS N L            
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDI---PSSTKNIDLSFNPL------------ 44

Query: 212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
                             S SN S L+ L +S   +          L  L+++++  N +
Sbjct: 45  ------------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 272 QGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNR 330
           Q   P  F  L  LE L   E  ++            +++++++ N ++       F N 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLR----YLILANNNLEGEVPNQLCRLKQLRLIDL 386
           +++V +DLSYN         ++ L         L ++ N ++  + +Q  +  +L  + L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 387 SNNNLFGQIPGC----LDNTSLHNNGDNDGSS-------APTRYKGKPLNKMYGVDLSCN 435
             N     I       L    +H     +           P+  +G     +    L+  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 436 KLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495
               +   +   L ++ A++ +  ++  +         + +SL +    L       L  
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 496 LNVLAVFSVAHNNLS 510
           L  L   ++  N  S
Sbjct: 330 LKSL---TLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 34/249 (13%)

Query: 273 GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
           G +      +  +      +  +S  +P     S+ + + LS N L   LK  +F N S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPD-DIPSSTKNIDLSFNPLKI-LKSYSFSNFSE 57

Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392
           +  LDLS              L  L  LIL  N ++   P     L  L  +      L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 393 GQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTS 450
                 +    +L                         ++++ N +   ++P     LT+
Sbjct: 118 SLESFPIGQLITLKK-----------------------LNVAHNFIHSCKLPAYFSNLTN 154

Query: 451 IRALNFSHNNLTGVIPVSFSNLKQ----VESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
           +  ++ S+N +  +       L++      SLD+S N ++  I  Q  +   L   ++  
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213

Query: 507 NNLSGKIPE 515
           N  S  I +
Sbjct: 214 NFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 42/216 (19%), Positives = 73/216 (33%), Gaps = 2/216 (0%)

Query: 6   SLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHD 65
                     L       N +      S+S      L  + LS +G             +
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE 400

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           L+++DF  S LK         +   L  L +   +    F         L+TL ++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG 185
           + N    +      L +L+LS+             ++ L+ L++SHN L      H    
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-Q 519

Query: 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
            ++L  L  S N +       + + + LA  +L  N
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
                 KL+ ++P  I   +S + ++ S N L  +   SFSN  +++ LD+S   +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 490 PPQLVELNVLAVFSVAHNNLSGKIPEW 516
                 L+ L+   +  N +    P  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (376), Expect = 1e-37
 Identities = 106/633 (16%), Positives = 210/633 (33%), Gaps = 68/633 (10%)

Query: 2   QIPFSLEP--FFNNSKLKVFSGECNEI-FVESESSHSMTPKFQLESVKLSGSGIHATF-- 56
             P +++   F N   L++     ++I F+  ++   +     L  ++L   G+      
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF---HLFELRLYFCGLSDAVLK 115

Query: 57  PKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQP--HWH 114
             +  N   L  +D S + ++  + +       +L ++   +N +       ++P     
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 115 LDTLHVSKNFFQGNIPLEIGVYF-----PRLVYLNLSRNDFN------------GSIPSS 157
           L    ++ N     + ++ G          L  L++S N +              S   S
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 158 IGDMNSLKFLDLSHNQLTGEIPEHLVIGCF--NLEYLVLSENSLHGQLFYKKIYLRKLAR 215
           +   + +       + +  +  ++   G    ++ +L LS   +          L+ L  
Sbjct: 236 LILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 216 LHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI 275
           L+L  N       ++      L+ L +S N L     +    L  +  I +  NH+    
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 276 PLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 335
              F  L  L+ LDL +N ++    +     +I  + LS N L   L             
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVT-LPKINLTAN----L 405

Query: 336 LDLSYNSFSG-NIPYWIERLTRLRYLILANNNLEGEVPNQLCR-LKQLRLIDLSNNNLFG 393
           + LS N     +I Y++ R+  L+ LIL  N       +Q       L  + L  N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIR 452
                L                        L+ +  + L+ N L   +PP +   LT++R
Sbjct: 466 AWETELCWDVFEG-----------------LSHLQVLYLNHNYLN-SLPPGVFSHLTALR 507

Query: 453 ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGK 512
            L+ + N LT +          +E LD+S N L    P   V L+V     + HN    +
Sbjct: 508 GLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSV---LDITHNKFICE 562

Query: 513 IP-EWTAQFTTFKEDSYEGNP--LLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITF 569
                   +      +  G P  + C  P     V+    ++   D   ++    F +  
Sbjct: 563 CELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFI 622

Query: 570 TSSYVIVILAIIGVLYVNPHWRRRWFYLIENWM 602
             +  + +  +  +            Y     +
Sbjct: 623 VCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (369), Expect = 8e-37
 Identities = 91/505 (18%), Positives = 168/505 (33%), Gaps = 49/505 (9%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
            E + LS + I             L+ ++                N  NL  L L ++ +
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIG 159
                   Q  +HL  L +         +          L  L+LS+N      +  S G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 160 DMNSLKFLDLSHNQLTGEIPEHL-VIGCFNLEYLVLSENSLHGQLFY------KKIYLRK 212
            +NSLK +D S NQ+       L  +    L +  L+ NSL+ ++               
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
           L  L +  N  T +I  + SN             +  +    L     +       ++++
Sbjct: 206 LEILDVSGNGWTVDITGNFSN------------AISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 273 GPIPLEFCQL--NYLEILDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFN 329
            P    F  L  + +  LDLS   +         +   ++ ++L+ N +   +    F+ 
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYG 312

Query: 330 RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
             ++  L+LSYN            L ++ Y+ L  N++          L++L+ +DL +N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372

Query: 390 NL-FGQIPGCLDNTSLHNNG-----------------DNDGSSAPTRYKGKPLNKMYGVD 431
            L        + +  L  N                  +N   +    Y    +  +  + 
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 432 LSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVS-----FSNLKQVESLDVSYNNL 485
           L+ N+ +     Q   +  S+  L    N L            F  L  ++ L +++N L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 486 NGKIPPQLVELNVLAVFSVAHNNLS 510
           N   P     L  L   S+  N L+
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (322), Expect = 5e-31
 Identities = 69/387 (17%), Positives = 123/387 (31%), Gaps = 47/387 (12%)

Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
                 L LS N       SS   +  L+ L+L        I +       NL  L L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 197 N---SLHGQLFYKKIYLRKLARLHLDANYCTGEI--PKSLSNCSPLEGLYMSDNNLYG-N 250
           +    LH   F     L  L  L L     +  +       N   L  L +S N +    
Sbjct: 83  SKIYFLHPDAFQG---LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQL--NYLEILDLSENNISGTLPSC--SSHS 306
           +    G L+SL  I  + N +      E   L    L    L+ N++   +        +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 307 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNN 366
             + + L    + G        N  ++       N+ S +  + +     +       +N
Sbjct: 200 PFRNMVLEILDVSG--------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 367 LEGEVPNQLCRLKQ--LRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKP 423
           ++    N    L +  +R +DLS+  +F       +    L                   
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV----------------- 294

Query: 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
                 ++L+ NK+          L +++ LN S+N L  +   +F  L +V  +D+  N
Sbjct: 295 ------LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 484 NLNGKIPPQLVELNVLAVFSVAHNNLS 510
           ++          L  L    +  N L+
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 57/300 (19%), Positives = 104/300 (34%), Gaps = 34/300 (11%)

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
            +    NL   +P  L     L    ++ N+++      F  L  L++L+L       T+
Sbjct: 9   AFYRFCNLT-QVPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 300 P--SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI--PYWIERLT 355
              +  +   ++ + L  + +Y  L    F     +  L L +   S  +    +   L 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 356 RLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN--------TSLHN 406
            L  L L+ N +    +     +L  L+ ID S+N +F      L+          SL  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 407 NGDNDGSSAPTRYKGKPLNKMY--GVDLSCNKLTGEIP------------PQIGKLTSIR 452
           N      S        P   M    +D+S N  T +I               +     I 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 453 ALNFSHNNLTGVIPVSFSNLKQ--VESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
              F  +N+      +F+ L +  V  LD+S+  +          L  L V ++A+N ++
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 30/180 (16%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
                + + +  +P   + L     L+L+ N +     +    L+QL+L++L +      
Sbjct: 8   IAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRA 453
           I       +  N                 L  +  +DL  +K+   + P     L  +  
Sbjct: 64  ID----KEAFRN-----------------LPNLRILDLGSSKIY-FLHPDAFQGLFHLFE 101

Query: 454 LNFSHNNLTGVI--PVSFSNLKQVESLDVSYNNLNG-KIPPQLVELNVLAVFSVAHNNLS 510
           L      L+  +     F NLK +  LD+S N +    + P   +LN L     + N + 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (364), Expect = 2e-37
 Identities = 88/441 (19%), Positives = 163/441 (36%), Gaps = 60/441 (13%)

Query: 60  LYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH 119
                +        +N+          +   + TL      +       ++   +L  ++
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQIN 74

Query: 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIP 179
            S N      PL+      +LV + ++ N      P  + ++ +L  L L +NQ+T   P
Sbjct: 75  FSNNQLTDITPLK---NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 180 -EHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLE 238
            ++L     NL  L LS N++          L  L +L    N  T   P  L+N + LE
Sbjct: 130 LKNLT----NLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLE 180

Query: 239 GLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
            L +S N +  +  + L  L++L  ++   N +    PL    L  L+ L L+ N +   
Sbjct: 181 RLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD- 235

Query: 299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
           + + +S + +  + L+ N +            + +  L L  N  S   P  +  LT L 
Sbjct: 236 IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTR 418
            L L  N LE   P  +  LK L  + L  NN+    P  + +                 
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS----------------- 329

Query: 419 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL 478
                L K+  +    NK++      +  LT+I  L+  HN ++ + P   +NL ++  L
Sbjct: 330 -----LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 479 DVSYNNLNGKIPPQLVELNVL 499
            ++              +++ 
Sbjct: 381 GLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 4e-35
 Identities = 84/444 (18%), Positives = 157/444 (35%), Gaps = 75/444 (16%)

Query: 92  NTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN 151
           +  + ++  ++  F              + K      +         ++  L   R    
Sbjct: 5   SATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL--G 57

Query: 152 GSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG---------- 201
                 +  +N+L  ++ S+NQLT   P   +     L  ++++ N +            
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNL 114

Query: 202 ---QLFYKKI-------YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
               LF  +I        L  L RL L +N  +     +LS  + L+ L    N +    
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK 171

Query: 252 PAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQV 311
           P  L NL++L  + ++ N +     L   +L  LE L  + N IS  +      + + ++
Sbjct: 172 P--LANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISD-ITPLGILTNLDEL 226

Query: 312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEV 371
            L+ N L      GT  + +++  LDL+ N  S   P  +  LT+L  L L  N +    
Sbjct: 227 SLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281

Query: 372 PNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD 431
           P  L  L  L  ++L+ N L   I    +  +L                         + 
Sbjct: 282 P--LAGLTALTNLELNENQLED-ISPISNLKNLTY-----------------------LT 315

Query: 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
           L  N ++   P  +  LT ++ L F +N ++ V     +NL  +  L   +N ++   P 
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP- 370

Query: 492 QLVELNVLAVFSVAHNNLSGKIPE 515
            L  L  +    +     +     
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (292), Expect = 7e-28
 Identities = 86/429 (20%), Positives = 142/429 (33%), Gaps = 85/429 (19%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           L  +   ++ +    P   L+N TNLN L L +N++S      +     L  L       
Sbjct: 114 LTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQV- 167

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG 185
               PL        L  L++S N    S  S +  + +L+ L  ++NQ++   P   +  
Sbjct: 168 TDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP---LGI 219

Query: 186 CFNLEYLVLSENSLHGQLFYKKI----YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLY 241
             NL+ L L+ N L      K I     L  L  L L  N  +   P  LS  + L  L 
Sbjct: 220 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271

Query: 242 MSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS 301
           +  N +    P  L  L++L ++ +  N L+   P+    L  L  L L  NNIS  +  
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISD-ISP 326

Query: 302 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLI 361
            SS + +Q++    N +       +  N ++I  L   +N  S   P  +  LTR+  L 
Sbjct: 327 VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 362 LANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKG 421
           L +        N    +     +      L                              
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALI----------------------------- 412

Query: 422 KPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVS 481
                               P  I    S    + + N  +    VS+    Q  ++   
Sbjct: 413 -------------------APATISDGGSYTEPDITWNLPSYTNEVSY-TFSQPVTIGKG 452

Query: 482 YNNLNGKIP 490
               +G + 
Sbjct: 453 TTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 57/335 (17%), Positives = 105/335 (31%), Gaps = 44/335 (13%)

Query: 6   SLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHD 65
            +      + L+  S       ++  ++ +      LE + +S + +  +    L    +
Sbjct: 148 DISALSGLTSLQQLSFGNQVTDLKPLANLT-----TLERLDISSNKV--SDISVLAKLTN 200

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           LE +  +++ +    P   L   TNL+ L L  N L       +    +L  L ++ N  
Sbjct: 201 LESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIP--------------------SSIGDMNSLK 165
               PL       +L  L L  N  +   P                    S I ++ +L 
Sbjct: 256 SNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 312

Query: 166 FLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTG 225
           +L L  N ++   P   V     L+ L    N +          L  +  L    N  + 
Sbjct: 313 YLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYL 285
             P  L+N + +  L ++D         +  N+S  N +      L  P           
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSY 423

Query: 286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG 320
              D++ N  S T     + S    +        G
Sbjct: 424 TEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  140 bits (355), Expect = 4e-37
 Identities = 70/387 (18%), Positives = 144/387 (37%), Gaps = 53/387 (13%)

Query: 129 IPLEIGVYFP-----RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV 183
           +P  I   FP       +   L +      +     ++ S+  L ++  ++   I    +
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 184 IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMS 243
               NLEYL L+ N +          L KL  L++  N  T     +L N + L  LY++
Sbjct: 63  EYLTNLEYLNLNGNQITDISPLSN--LVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118

Query: 244 DNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303
           ++N+    P  L NL+ +  + +  NH    +      +  L  L ++E+ +   +   +
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTPIA 174

Query: 304 SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILA 363
           + + +  + L+ N +          + +S+       N  +   P  +  +TRL  L + 
Sbjct: 175 NLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKP 423
           NN +    P  L  L QL  +++  N +   I    D T L                   
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQI-SDINAVKDLTKLKM----------------- 269

Query: 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
                 +++  N+++      +  L+ + +L  ++N L          L  + +L +S N
Sbjct: 270 ------LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 484 NLNGKIPPQLVELNVLAVFSVAHNNLS 510
           ++    P  L  L+ +     A+  + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 4e-36
 Identities = 76/401 (18%), Positives = 155/401 (38%), Gaps = 73/401 (18%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144
             +       VL+  S++    +  +    +  L V+         +E   Y   L YLN
Sbjct: 18  DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASIQGIE---YLTNLEYLN 72

Query: 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLF 204
           L+ N      P  + ++  L  L +  N++T +I    +    NL  L L+E+++     
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISP 127

Query: 205 YKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDI 264
                L K+  L+L AN+        LSN + L  L ++++ +    P  + NL+ L  +
Sbjct: 128 LAN--LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 265 MMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
            +  N ++   PL    L  L       N I+   P                        
Sbjct: 183 SLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP------------------------ 216

Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI 384
               N + + +L +  N  +   P  +  L++L +L +  N +     N +  L +L+++
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 385 DLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ 444
           ++ +N +          + +    +              L+++  + L+ N+L  E    
Sbjct: 271 NVGSNQI----------SDISVLNN--------------LSQLNSLFLNNNQLGNEDMEV 306

Query: 445 IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
           IG LT++  L  S N++T + P   ++L +++S D +   +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 2e-31
 Identities = 64/351 (18%), Positives = 133/351 (37%), Gaps = 50/351 (14%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            +  + ++G  +     + +    +LEY++ + + +    P   L N   L  L +  N 
Sbjct: 45  SITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK 99

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           ++      +Q   +L  L+++++      PL       ++  LNL  N  N S  S + +
Sbjct: 100 ITDI--SALQNLTNLRELYLNEDNISDISPLA---NLTKMYSLNLGAN-HNLSDLSPLSN 153

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
           M  L +L ++ +++    P   +    +L  L L+ N +                     
Sbjct: 154 MTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIED------------------- 191

Query: 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
                     L++ + L       N +    P  + N++ LN + +  N +    PL   
Sbjct: 192 -------ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA-- 240

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
            L+ L  L++  N IS  + +    + ++ +++  N +          N S + +L L+ 
Sbjct: 241 NLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNN 296

Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           N         I  LT L  L L+ N++    P  L  L ++   D +N  +
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 2e-22
 Identities = 61/295 (20%), Positives = 113/295 (38%), Gaps = 32/295 (10%)

Query: 6   SLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHD 65
            + P  N  KL       N+I  +  +  ++T    L  + L+   I  +    L N   
Sbjct: 80  DISPLSNLVKLTNLYIGTNKI-TDISALQNLT---NLRELYLNEDNI--SDISPLANLTK 133

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           +  ++   ++   +     L N T LN L +  + +      PI     L +L ++ N  
Sbjct: 134 MYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG 185
           +   PL        L Y     N      P  + +M  L  L + +N++T   P   +  
Sbjct: 190 EDISPLA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LAN 241

Query: 186 CFNLEYLVLSENSLHGQLFYKKI----YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLY 241
              L +L +  N +        I     L KL  L++ +N  +      L+N S L  L+
Sbjct: 242 LSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 242 MSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
           +++N L       +G L++L  + ++ NH+    PL    L+ ++  D +   I 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (365), Expect = 4e-37
 Identities = 82/473 (17%), Positives = 160/473 (33%), Gaps = 40/473 (8%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L+ + L  S I+       Y+   LE++D SD++L     +      ++L  L L  N 
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNP 109

Query: 101 LSG-PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG 159
                         +L TL +        I          L  L +           S+ 
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL---HGQLFYKKIYLRKLARL 216
            +  +  L L  ++    + E       ++ YL L + +L                + +L
Sbjct: 170 SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 217 HLDANYCT----GEIPKSLSNCSPLEGLYMSDNNLYG------NIPAWLGNLSSLNDIMM 266
               +  T     E+ K L     L  +   D  L G      +    +  L  +  + +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 267 AINHLQG-----PIPLEFCQLNYLEILDLSENNISGTLPSCSSH-STIQQVHLSKNML-Y 319
              H+        +   +  L  ++ + +  + +     S S H  +++ + LS+N++  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 320 GPLKYGTFFNR-SSIVTLDLSYNSFS--GNIPYWIERLTRLRYLILANNNLEGEVPNQLC 376
             LK         S+ TL LS N           +  L  L  L ++ N     +P+   
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 377 RLKQLRLIDLSNNNL---FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLS 433
             +++R ++LS+  +      IP  L+   + NN  +  S          L ++  + +S
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL--------FLPRLQELYIS 459

Query: 434 CNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
            NKL   +P        +  +  S N L  V    F  L  ++ + +  N  +
Sbjct: 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 4e-33
 Identities = 75/449 (16%), Positives = 146/449 (32%), Gaps = 61/449 (13%)

Query: 91  LNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDF 150
                 R+ S +    +P      + +L +S N     I          L  L L  +  
Sbjct: 7   SGVCDGRSRSFT---SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 151 NGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH----GQLFYK 206
           N     +   + SL+ LDLS N L+  +         +L+YL L  N         LF  
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 207 KIYLRKLARLHLDANYCTGEIPK-SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM 265
              L  L  L +       EI +   +  + L  L +   +L       L ++  ++ + 
Sbjct: 122 ---LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 266 MAINHLQGPIPLEFCQLNYLEILDLSENNIS----GTLPSCSSHSTIQQVHLSKNMLYG- 320
           + ++     + +    L+ +  L+L + N++      LP     S ++++    ++L   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 321 -----PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE--------RLTRLRYLILANNNL 367
                          S +   D + N      P   +            +R L +    L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 368 EGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNK 426
             ++      L++++ I + N+ +F        +  SL                      
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF-------------------- 338

Query: 427 MYGVDLSCNKLTGEIPPQ---IGKLTSIRALNFSHNNLT--GVIPVSFSNLKQVESLDVS 481
              +DLS N +  E        G   S++ L  S N+L            LK + SLD+S
Sbjct: 339 ---LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 482 YNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
            N  +  +P        +   +++   + 
Sbjct: 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 6e-27
 Identities = 67/407 (16%), Positives = 134/407 (32%), Gaps = 72/407 (17%)

Query: 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
                 +     F  SIPS +    ++K LDLS N++T  I    +  C NL+ L+L  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 198 SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN 257
                         ++  +             +  +   LE L +SDN+L     +W G 
Sbjct: 61  --------------RINTIE----------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 258 LSSLNDIMMAINHLQG-PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316
           LSSL  + +  N  Q   +   F  L  L+ L +        +                 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--------------- 141

Query: 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC 376
                     F   +S+  L++   S        ++ +  + +L L  +     +     
Sbjct: 142 --------IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 377 RLKQLRLIDLSNNNLFG---------QIPGCLDNTSLHNNGDNDGSSAP---TRYKGKPL 424
            L  +R ++L + NL           ++   +   +   +   D S             L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 425 NKMYGVDLSCNKLTGEIPPQIG--------KLTSIRALNFSHNNLTGVIPVSFSNLKQVE 476
           +++   D + N L    P +          +  +IR L+     L   +   +S L++V+
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 477 SLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTF 523
            + V  + +          L  L    ++ N +  +  + +A    +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (361), Expect = 2e-36
 Identities = 83/472 (17%), Positives = 163/472 (34%), Gaps = 43/472 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L ++ L+G+ I +           L+ +   ++NL     N+ + +   L  L + +N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 101 L-SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL----VYLNLSRNDFNGSIP 155
           + S           +L+ L +S N  Q +I         ++    + L+LS N  N  I 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI------Y 209
                   L  L L +N  +  + +  + G   LE   L       +   +K        
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 210 LRKLARLHLDANYCTG---EIPKSLSNCSPLEGLYMSDNNLYGNIP-AWLGNLSSLNDIM 265
           L  L        Y      +I    +  + +    +    +      ++      L  + 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 266 MAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKY 324
                          +L  L+ L  + N       S     +++ + LS+N L       
Sbjct: 314 CKFGQFP------TLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRL 383
            + F  +S+  LDLS+N     +      L +L +L   ++NL+     +    L+ L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 384 IDLSNNNLFGQIPGCLDNTS------LHNNG--DNDGSSAPTRYKGKPLNKMYGVDLSCN 435
           +D+S+ +      G  +  S      +  N   +N             L  +  +DLS  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-----TELRNLTFLDLSQC 480

Query: 436 KLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
           +L  ++ P     L+S++ LN + N L  V    F  L  ++ + +  N  +
Sbjct: 481 QLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (356), Expect = 1e-35
 Identities = 95/513 (18%), Positives = 162/513 (31%), Gaps = 51/513 (9%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
             + +D S + L+    ++   +   L  L L    +        Q   HL TL ++ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
            Q ++ L        L  L     +        IG + +LK L+++HN +          
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 185 GCFNLEYLVLSENSLHG------------QLFYKKIYLR---------------KLARLH 217
              NLE+L LS N +               L    + L                +L +L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 218 LDANYCTGEIPK-------SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH 270
           L  N+ +  + K        L     + G + ++ NL     + L  L +L      + +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 271 LQG---PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTF 327
           L      I   F  L  +    L    I   +   S +   Q + L              
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF----PT 321

Query: 328 FNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE--GEVPNQLCRLKQLRLID 385
               S+  L  + N            L  L +L L+ N L   G           L+ +D
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 386 LSNNNLFGQIPGCLDNTSLH--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPP 443
           LS N +       L    L   +   ++            L  +  +D+S          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 444 QIGKLTSIRALNFSHNNLTGVI-PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVF 502
               L+S+  L  + N+      P  F+ L+ +  LD+S   L    P     L+ L V 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 503 SVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535
           ++A N L         + T+ ++     NP  C
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (255), Expect = 6e-23
 Identities = 69/385 (17%), Positives = 115/385 (29%), Gaps = 55/385 (14%)

Query: 144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQL 203
                +F   IP ++    S K LDLS N L   +  +       L+ L LS   +    
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI---- 64

Query: 204 FYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLND 263
                                     +  + S L  L ++ N +          LSSL  
Sbjct: 65  --------------------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 264 IMMAINHLQGPIPLEFCQLNYLEILDLSENNI-SGTLPSCSSHST-IQQVHLSKNMLYGP 321
           ++    +L          L  L+ L+++ N I S  LP   S+ T ++ + LS N +   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS- 163

Query: 322 LKYGTFFN----RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCR 377
           +               ++LDLS N  +  I     +  RL  L L NN     V     +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 378 -LKQLRLIDL------SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKP-----LN 425
            L  L +  L      +  NL       L+        +   +               L 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
            +    L    +   +          + L   +        +   +LK    L  + N  
Sbjct: 283 NVSSFSLVSVTIE-RVKDFSY-NFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNKG 337

Query: 486 NGKIPPQLVELNVLAVFSVAHNNLS 510
                   V+L  L    ++ N LS
Sbjct: 338 GN--AFSEVDLPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 11/218 (5%)

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSR 147
            +L  L   +N     F         L+ L +S+N         +       L YL+LS 
Sbjct: 325 KSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 148 NDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG---QLF 204
           N    ++ S+   +  L+ LD  H+ L       + +   NL YL +S          +F
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 205 YKKIYLRKLARLHLDANYCTGEIPK-SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLND 263
                L  L  L +  N           +    L  L +S   L    P    +LSSL  
Sbjct: 442 NG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 264 IMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS 301
           + MA N L+      F +L  L+ + L  N    + P 
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (352), Expect = 1e-35
 Identities = 68/498 (13%), Positives = 151/498 (30%), Gaps = 27/498 (5%)

Query: 10  FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYV 69
             N ++ K+     + +  +   +      + ++ + LSG+ +       L     LE +
Sbjct: 6   KQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 70  DFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNI 129
           + S + L        LE+ + L TL L NN +       +     ++TLH + N     +
Sbjct: 64  NLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 130 PLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL 189
                        + L+ N          G  + +++LDL  N++       L      L
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 190 EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG 249
           E+L L  N ++      ++   KL  L L +N     +     + + +  + + +N L  
Sbjct: 172 EHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-V 227

Query: 250 NIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG-TLPSCSSHSTI 308
            I   L    +L    +  N        +F       +  +++  +   T  +    +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 309 QQVHLSKNML----YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN 364
              H                     R     L    +     +    E   R R +    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALK 345

Query: 365 NNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD-NTSLHNNGDNDGSSAPTRYKGKP 423
                 +     R +    ++     L  Q+      +  L             ++  + 
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 424 LNKMYGVDLSCNKLT-GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSY 482
            + +  +     +     +  Q  +  +IR  +   +  T +   +    K     D++ 
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

Query: 483 NNLNGKIPPQLVELNVLA 500
            + N  +   +V    LA
Sbjct: 466 ASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 6e-33
 Identities = 76/400 (19%), Positives = 137/400 (34%), Gaps = 49/400 (12%)

Query: 132 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191
           EI     R     ++ +    ++ S      ++K LDLS N L+ +I    +     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
           L LS N L+  L  +   L  L  L L+ NY        L     +E L+ ++NN+   +
Sbjct: 63  LNLSSNVLYETLDLES--LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRV 114

Query: 252 PAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHS--TIQ 309
                      +I +A N +     L+    + ++ LDL  N I     +  + S  T++
Sbjct: 115 SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 310 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG 369
            ++L  N +Y  +K    F  + + TLDLS N  +  +    +    + ++ L NN L  
Sbjct: 173 HLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 370 EVPNQLCRLKQLRLIDLSNN--------------------------NLFGQIPGCLDNTS 403
            +   L   + L   DL  N                           L GQ        +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 404 LHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG----EIPPQIGKLTSIRALNFSHN 459
           L + G       P  +  + L  +   + +     G     +  +       R ++    
Sbjct: 288 LGHYGAYCCEDLPAPFADR-LIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 460 NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVL 499
               VI       +   +L+     L+ ++         L
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 9e-28
 Identities = 61/359 (16%), Positives = 113/359 (31%), Gaps = 87/359 (24%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK 212
           +I     + N  K   ++ + L  +    L    +N++ L LS N L             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL------------- 46

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
                      +      L+  + LE L +S N LY      L +LS+L  + +  N++Q
Sbjct: 47  -----------SQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

Query: 273 GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
                E      +E L  + NNIS                +S +                
Sbjct: 94  -----ELLVGPSIETLHAANNNIS---------------RVSCSRG------------QG 121

Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNL 391
              + L+ N  +          +R++YL L  N ++             L  ++L  N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSI 451
           +  + G +    L                         +DLS NKL   + P+      +
Sbjct: 182 Y-DVKGQVVFAKLKT-----------------------LDLSSNKLA-FMGPEFQSAAGV 216

Query: 452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
             ++  +N L  +I  +    + +E  D+  N  +              V +VA   + 
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 25/194 (12%), Positives = 70/194 (36%), Gaps = 14/194 (7%)

Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386
             N +      ++ +S    +    +    ++ L L+ N L       L    +L L++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 387 SNNNLFGQIPGCLDNTSLH--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ 444
           S+N L+ +       ++L   +  +N                +  +  + N ++  +   
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYVQELL------VGPSIETLHAANNNIS-RVSC- 116

Query: 445 IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE-LNVLAVFS 503
             +    + +  ++N +T +  +      +V+ LD+  N ++     +L    + L   +
Sbjct: 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 504 VAHNNLSGKIPEWT 517
           + +N +   +    
Sbjct: 176 LQYNFIY-DVKGQV 188

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 8e-33
 Identities = 62/367 (16%), Positives = 106/367 (28%), Gaps = 84/367 (22%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
            E++   GS     +   L         D +  +      N       N         +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRAL 68

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIGD 160
                                          +     P  V L L         P     
Sbjct: 69  K-------------------------ATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCF-NLEYLVLSENSLH------GQLFYKKIYLRKL 213
           ++ L+ + +    L  E+P+   +  F  LE L L+ N L                L +L
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDT--MQQFAGLETLTLARNPLRALPASIAS-------LNRL 152

Query: 214 ARLHLDANYCTGEIPKSLSNCSP---------LEGLYMSDNNLYGNIPAWLGNLSSLNDI 264
             L + A     E+P+ L++            L+ L +    +  ++PA + NL +L  +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 265 MMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
            +  + L   +      L  LE LDL         P                        
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP----------------------- 247

Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI 384
             F  R+ +  L L   S    +P  I RLT+L  L L        +P+ + +L    +I
Sbjct: 248 -IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 385 DLSNNNL 391
            +  +  
Sbjct: 307 LVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 3e-32
 Identities = 52/352 (14%), Positives = 102/352 (28%), Gaps = 73/352 (20%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
            E + F  S     + + L    +        + +         Q + +   +       
Sbjct: 14  RENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSA--WRQANSNNPQIETRTGRA 67

Query: 126 QGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
                  +     P  V L L         P     ++ L+ + +    L  E+P+   +
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT--M 123

Query: 185 GCF-NLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMS 243
             F  LE L L+ N L                           +P S+++ + L  L + 
Sbjct: 124 QQFAGLETLTLARNPLR-------------------------ALPASIASLNRLRELSIR 158

Query: 244 DNNLYGNIPAWLGN---------LSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENN 294
                  +P  L +         L +L  + +    ++  +P     L  L+ L +  + 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSP 217

Query: 295 ISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL 354
           +S  L                             +   +  LDL   +   N P      
Sbjct: 218 LS-ALGP------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN-TSLH 405
             L+ LIL + +    +P  + RL QL  +DL       ++P  +    +  
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (316), Expect = 6e-32
 Identities = 53/377 (14%), Positives = 102/377 (27%), Gaps = 73/377 (19%)

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199
              L    +         +         D +                 N +    +  +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRAL 68

Query: 200 HGQL-FYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNL 258
                  +         L L +     + P      S L+ + +    L   +P  +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQF 126

Query: 259 SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNML 318
           + L  + +A N L+  +P     LN L  L +        LP                 L
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEP---------------L 170

Query: 319 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL 378
                 G      ++ +L L +     ++P  I  L  L+ L + N+ L   +   +  L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 379 KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT 438
            +L  +DL                                               C  L 
Sbjct: 229 PKLEELDLRG---------------------------------------------CTALR 243

Query: 439 GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNV 498
              PP  G    ++ L     +    +P+    L Q+E LD+       ++P  + +L  
Sbjct: 244 -NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 499 LAVFSVAHNNLSGKIPE 515
             +  V   +L  ++ +
Sbjct: 303 NCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L+S+K+  S +       +++   LE +D         +P         L  L+L++ S
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCS 264

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
                        +L TL           PL+I     +L  L+L        +PS I  
Sbjct: 265 -------------NLLTL-----------PLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 161 MNSLKFLDLSHNQLTGEIPEHL 182
           + +   + +  +    ++ +H 
Sbjct: 300 LPANCIILVPPHLQA-QLDQHR 320

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (324), Expect = 4e-32
 Identities = 87/448 (19%), Positives = 161/448 (35%), Gaps = 68/448 (15%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           Q   ++L+  G+  + P+   +   LE +  S ++L  E P  L ++  +L        +
Sbjct: 72  QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPE-LPQSLKSLLVDNNNLKA 125

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           LS            L+ L VS N  +  +P E+      L  +++  N     +P     
Sbjct: 126 LSDLPP-------LLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLK-KLPDLPP- 173

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
             SL+F+   +NQL  E+PE  +     L  +    NSL  +L         L  +    
Sbjct: 174 --SLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGN 224

Query: 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
           N         L N   L  +Y  +N L   +P    +L +LN     +  L    P    
Sbjct: 225 NILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDL----PELPQ 277

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
            L +L++ +   + +S   P+      +  ++ S N +             S+  L++S 
Sbjct: 278 SLTFLDVSENIFSGLSELPPN------LYYLNASSNEIRSL-----CDLPPSLEELNVSN 326

Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL--FGQIPGC 398
           N     +P       RL  LI + N+L  EVP     LKQL    +  N L  F  IP  
Sbjct: 327 NKLI-ELP---ALPPRLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLREFPDIPES 378

Query: 399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSH 458
           +++  ++++                   +  + +  N L  E P     +     L  + 
Sbjct: 379 VEDLRMNSHLAEVPEL---------PQNLKQLHVETNPLR-EFPDIPESVED---LRMNS 425

Query: 459 NNLTGVIPVSFSNLKQVESLDVSYNNLN 486
             +      +     ++E     +++ +
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (288), Expect = 2e-27
 Identities = 88/474 (18%), Positives = 150/474 (31%), Gaps = 116/474 (24%)

Query: 55  TFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN------------NTNLNTLVLRNNSLS 102
             P    N         + S  +   P    E             +   + L L N  LS
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 103 GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN 162
                                    ++P         L  L  S N     +P     + 
Sbjct: 85  -------------------------SLPELPP----HLESLVASCNSLT-ELPELPQSLK 114

Query: 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY 222
           SL   + +   L+   P         LEYL +S N L                       
Sbjct: 115 SLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE---------------------- 144

Query: 223 CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQL 282
              ++P  L N S L+ + + +N+L   +P    +L  +       N L+  +P E   L
Sbjct: 145 ---KLP-ELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIA---AGNNQLEE-LP-ELQNL 194

Query: 283 NYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
            +L  +    N++   LP      +++ +    N+L          N   + T+    N 
Sbjct: 195 PFLTAIYADNNSLK-KLP--DLPLSLESIVAGNNILEEL---PELQNLPFLTTIYADNNL 248

Query: 343 FSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNT 402
               +P   +    L  L + +N L  ++P     L  L + +   + L  ++P  L   
Sbjct: 249 LK-TLP---DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYL 302

Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462
           +  +N        P          +  +++S NKL  E+P    +L     L  S N+L 
Sbjct: 303 NASSNEIRSLCDLPP--------SLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA 350

Query: 463 GVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEW 516
             +P    NLK    L V YN L  + P     +  L +     N+   ++PE 
Sbjct: 351 -EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 60/311 (19%), Positives = 107/311 (34%), Gaps = 65/311 (20%)

Query: 208 IYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMA 267
           +    L      ++  T E+P    N       Y + +    N P   G    +      
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM------ 60

Query: 268 INHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGT 326
                    L  C       L+L+   +S +LP    H  ++ +  S N L   P     
Sbjct: 61  -----AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLTELP---EL 109

Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386
             +  S++  + +  + S   P        L YL ++NN LE ++P  L     L++ID+
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV 160

Query: 387 SNNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI 445
            NN+L  ++P    +   +                              N+L     P++
Sbjct: 161 DNNSL-KKLPDLPPSLEFI--------------------------AAGNNQLE--ELPEL 191

Query: 446 GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505
             L  + A+   +N+L   +P    +L   ES+    N L  +  P+L  L  L      
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYAD 245

Query: 506 HNNLSGKIPEW 516
           +N L   +P+ 
Sbjct: 246 NNLLK-TLPDL 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNL-------------KQVES 477
               + LT E+P +   + S      + +      P                   +Q   
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 478 LDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPL 533
           L+++   L+  +P     L  L     + N+L+ ++PE      +   D+     L
Sbjct: 76  LELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (323), Expect = 6e-32
 Identities = 70/363 (19%), Positives = 123/363 (33%), Gaps = 60/363 (16%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P  I         L+L +N               L+ L+L+ N ++  +        FN
Sbjct: 26  VPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81

Query: 189 LEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
           L  L L  N    +   +F     L  L +L +  N     +     +   L+ L + DN
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTG---LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 246 NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSH 305
           +L          L+SL  + +   +L          L+ L +L L   NI+  +      
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRD---- 193

Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365
                               +F     +  L++S+  +   +         L  L + + 
Sbjct: 194 -------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 366 NLEGEVPNQLCR-LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL 424
           NL   VP    R L  LR ++LS N +       ++ + LH                  L
Sbjct: 235 NLT-AVPYLAVRHLVYLRFLNLSYNPI-----STIEGSMLHE-----------------L 271

Query: 425 NKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
            ++  + L   +L   + P     L  +R LN S N LT +    F ++  +E+L +  N
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

Query: 484 NLN 486
            L 
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 4e-28
 Identities = 71/387 (18%), Positives = 136/387 (35%), Gaps = 71/387 (18%)

Query: 167 LDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYC 223
           +     +    +PE +         L L +N   +L+   F        L  L L+ N  
Sbjct: 16  VLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIKTLNQDEF---ASFPHLEELELNENIV 68

Query: 224 TGEIPKSLSNCSPLEGLYMSDNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQL 282
           +   P + +N   L  L +  N L   IP      LS+L  + ++ N +   +   F  L
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 283 NYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
             L+ L++ +N++   +                           F   +S+  L L   +
Sbjct: 128 YNLKSLEVGDNDLV-YISH-----------------------RAFSGLNSLEQLTLEKCN 163

Query: 343 FSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI-PGCLDN 401
            +      +  L  L  L L + N+         RL +L+++++S+      + P CL  
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 402 TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ-IGKLTSIRALNFSHNN 460
            +L +                       + ++   LT  +P   +  L  +R LN S+N 
Sbjct: 224 LNLTS-----------------------LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ-LVELNVLAVFSVAHNNLSGKIPEWT-A 518
           ++ +       L +++ + +    L   + P     LN L V +V+ N L+  + E    
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317

Query: 519 QFTTFKEDSYEGNPLLCGKPLPDCDVA 545
                +    + NPL C     DC + 
Sbjct: 318 SVGNLETLILDSNPLAC-----DCRLL 339

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (292), Expect = 7e-28
 Identities = 66/336 (19%), Positives = 110/336 (32%), Gaps = 45/336 (13%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHW-----HLDTLH 119
           +   +D   + +K         +  +L  L L  N +S      ++P       +L TL 
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-----VEPGAFNNLFNLRTLG 86

Query: 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEI 178
           +  N  +  IPL +      L  L++S N     +   +  D+ +LK L++  N L   I
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YI 143

Query: 179 PEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCS 235
                 G  +LE L L +    S+  +      +L  L  L L           S     
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 236 PLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295
            L+ L +S       +        +L  + +   +L     L    L YL  L+LS N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 296 SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT 355
           S T+                                 +  + L     +   PY    L 
Sbjct: 261 S-TIEG-----------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 356 RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
            LR L ++ N L     +    +  L  + L +N L
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 49/274 (17%), Positives = 99/274 (36%), Gaps = 29/274 (10%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L  + +S + I         + ++L+ ++  D++L     +       +L  L L   +
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN 163

Query: 101 LSGPFRMPIQPHW-----HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 155
           L+      I          L  L +        I         RL  L +S   +  ++ 
Sbjct: 164 LTS-----IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRK 212
            +     +L  L ++H  LT  +P   V     L +L LS N   ++ G + ++   L +
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---LLR 273

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPA-WLGNLSSLNDIMMAINHL 271
           L  + L         P +    + L  L +S N L   +      ++ +L  +++  N  
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSN-- 330

Query: 272 QGPIPLEF-CQLNYLEILDLSENNISGTLPSCSS 304
               PL   C+L ++        N +   P+C++
Sbjct: 331 ----PLACDCRLLWV-FRRRWRLNFNRQQPTCAT 359

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 4e-31
 Identities = 63/356 (17%), Positives = 134/356 (37%), Gaps = 49/356 (13%)

Query: 135 VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL 194
           +       +    +       + +     ++ L+L+  Q+  EI  +       ++ L +
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 100

Query: 195 SEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
             N    L   +F     +  L  L L+ N  +        N   L  L MS+NNL   I
Sbjct: 101 GFNAIRYLPPHVFQN---VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERI 156

Query: 252 PA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQ 310
                   +SL ++ ++ N L     ++   +  L   ++S N +S TL    +   +++
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPIA---VEE 209

Query: 311 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE 370
           +  S N +   ++         +  L L +N+ + +   W+     L  + L+ N LE  
Sbjct: 210 LDASHNSI-NVVRGPVN---VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKI 263

Query: 371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV 430
           + +   ++++L  + +SNN L           +L+  G               +  +  +
Sbjct: 264 MYHPFVKMQRLERLYISNNRL----------VALNLYGQP-------------IPTLKVL 300

Query: 431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
           DLS N L   +     +   +  L   HN++  +   +   LK   +L +S+N+ +
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (281), Expect = 6e-27
 Identities = 67/352 (19%), Positives = 125/352 (35%), Gaps = 68/352 (19%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
             + V    S +       L +   +E ++ +D  ++ E   +       +  L +  N+
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 104

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-G 159
           +                           +P  +    P L  L L RND + S+P  I  
Sbjct: 105 IR-------------------------YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 138

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLD 219
           +   L  L +S+N L   I +       +L+ L LS N L          +  L   ++ 
Sbjct: 139 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVS 194

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
            N  +     +L+    +E L  S N+                     IN ++GP+    
Sbjct: 195 YNLLS-----TLAIPIAVEELDASHNS---------------------INVVRGPV---- 224

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 339
                L IL L  NN++       ++  + +V LS N L   + Y  F     +  L +S
Sbjct: 225 --NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYIS 280

Query: 340 YNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
            N     +  + + +  L+ L L++N+L   V     +  +L  + L +N++
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (262), Expect = 2e-24
 Identities = 58/380 (15%), Positives = 124/380 (32%), Gaps = 88/380 (23%)

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ 202
           +++     +         +N+ K +   ++ +  ++P  L+     +E L L++  +   
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-- 82

Query: 203 LFYKKIYLRKLARLHLDANYCTGEIPK-SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSL 261
                                  EI   + +    ++ LYM  N +    P    N+  L
Sbjct: 83  -----------------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 262 NDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGP 321
             +++  N L       F     L  L +S NN+   +                      
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED-------------------- 158

Query: 322 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQL 381
               TF   +S+  L LS N  + ++   +  +  L +  ++ N L       L     +
Sbjct: 159 ---DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAV 207

Query: 382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI 441
             +D S+N++            +                     ++  + L  N LT   
Sbjct: 208 EELDASHNSI----------NVVRGPV---------------NVELTILKLQHNNLTD-- 240

Query: 442 PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAV 501
              +     +  ++ S+N L  ++   F  ++++E L +S N L   +      +  L V
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 502 FSVAHNNLSGKIPEWTAQFT 521
             ++HN+L   +     QF 
Sbjct: 300 LDLSHNHLL-HVERNQPQFD 318

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 53/262 (20%), Positives = 101/262 (38%), Gaps = 37/262 (14%)

Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC--SSHSTI 308
           I + L       D+ + +         E   LN  +I+    + +   LP+    S   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE 368
           + ++L+   +   +    F    +I  L + +N+     P+  + +  L  L+L  N+L 
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 369 GEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMY 428
                      +L  + +SNNNL            + ++              +    + 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNL----------ERIEDDT------------FQATTSLQ 168

Query: 429 GVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK 488
            + LS N+LT  +      + S+   N S+N L+     + +    VE LD S+N++N  
Sbjct: 169 NLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV 220

Query: 489 IPPQLVELNVLAVFSVAHNNLS 510
             P  VEL +L    + HNNL+
Sbjct: 221 RGPVNVELTIL---KLQHNNLT 239

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (313), Expect = 4e-30
 Identities = 82/473 (17%), Positives = 145/473 (30%), Gaps = 102/473 (21%)

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199
              LN+  +    ++P  +     +  L +  N LT  +P         L  L +S N L
Sbjct: 42  NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALP----PELRTLEVSGNQL 93

Query: 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLS 259
              L      L +L+            +P   S    L  L++  N L  ++P     L 
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQL-TSLPVLPPGLQ 144

Query: 260 SLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLY 319
            L+   ++ N L   +P    +L  L       N ++ +LP                   
Sbjct: 145 ELS---VSDNQLAS-LPALPSELCKL---WAYNNQLT-SLPM------------------ 178

Query: 320 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLK 379
                      S +  L +S N  + ++P     L +L      NN L   +P     LK
Sbjct: 179 ---------LPSGLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLK 224

Query: 380 QLRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT 438
           +L    +S N L   +P        L                           +S N+LT
Sbjct: 225 EL---IVSGNRL-TSLPVLPSELKEL--------------------------MVSGNRLT 254

Query: 439 GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNV 498
             +P     L S   L+   N LT  +P S  +L    ++++  N L+ +    L E+  
Sbjct: 255 -SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 499 LAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNS 558
              +S               +       +      L      +   A       +ED   
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALHLAA---ADWLVPAREGEPAPADRWHMFGQEDNAD 366

Query: 559 LIDMGSFYITFTSSYVIV------ILAIIGVLYVNPHWRRRWFYLIENWMTSC 605
              +    ++ T +++        I + +  L  +   R   F +     +SC
Sbjct: 367 AFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSC 419

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (295), Expect = 6e-28
 Identities = 73/400 (18%), Positives = 127/400 (31%), Gaps = 121/400 (30%)

Query: 88  NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSR 147
           N     L +  + L+                          +P  +      +  L +  
Sbjct: 39  NNGNAVLNVGESGLT-------------------------TLPDCLP---AHITTLVIPD 70

Query: 148 NDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK 207
           N+   S+P+       L+ L++S NQLT  +P     G   L         L        
Sbjct: 71  NNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPAL----- 119

Query: 208 IYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMA 267
                L +L +  N  T  +P        L+ L +SDN L  ++PA    L  L      
Sbjct: 120 --PSGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQL-ASLPALPSELCKLW---AY 169

Query: 268 INHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTF 327
            N L   +P+       L+ L +S+N ++ +LP     +                     
Sbjct: 170 NNQLTS-LPMLPSG---LQELSVSDNQLA-SLP-----TLP------------------- 200

Query: 328 FNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS 387
              S +  L    N  + ++P      + L+ LI++ N L   +P     LK+L    +S
Sbjct: 201 ---SELYKLWAYNNRLT-SLP---ALPSGLKELIVSGNRLT-SLPVLPSELKEL---MVS 249

Query: 388 NNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG 446
            N L   +P       SL                           +  N+LT  +P  + 
Sbjct: 250 GNRL-TSLPMLPSGLLSL--------------------------SVYRNQLT-RLPESLI 281

Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
            L+S   +N   N L+     +   L+++ S       + 
Sbjct: 282 HLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (269), Expect = 1e-24
 Identities = 70/341 (20%), Positives = 120/341 (35%), Gaps = 76/341 (22%)

Query: 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
                 L + E+ L                           +P  L     +  L + DN
Sbjct: 39  NNGNAVLNVGESGLT-------------------------TLPDCLPAH--ITTLVIPDN 71

Query: 246 NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSH 305
           NL  ++PA    L +L    ++ N L   +P+    L  L I      ++          
Sbjct: 72  NL-TSLPALPPELRTLE---VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG---- 122

Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRS--SIVTLDLSYNSFSGNIPYWIERLTRLRYLILA 363
             + ++ +  N L       T        +  L +S N  + ++P     L +L      
Sbjct: 123 --LCKLWIFGNQL-------TSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLW---AY 169

Query: 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP---GCLDNTSLHNNGDNDGSSAPTRYK 420
           NN L   +P     L++L    +S+N L   +P     L     +NN      + P+   
Sbjct: 170 NNQLT-SLPMLPSGLQEL---SVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSG-- 222

Query: 421 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDV 480
              L ++    +S N+LT  +P    +L     L  S N LT  +P+  S L    SL V
Sbjct: 223 ---LKELI---VSGNRLT-SLPVLPSELKE---LMVSGNRLTS-LPMLPSGL---LSLSV 268

Query: 481 SYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFT 521
             N L  ++P  L+ L+     ++  N LS +  +   + T
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 7e-18
 Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 54/239 (22%)

Query: 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 336
           +  C  N   +L++ E+ ++ TLP C                            + I TL
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLP--------------------------AHITTL 66

Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
            +  N+ + ++P        LR L ++ N L   +P     L +L +      +L   +P
Sbjct: 67  VIPDNNLT-SLP---ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL-PALP 120

Query: 397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNF 456
             L    L     N  +S P          +  + +S N+L   +P    +L     L  
Sbjct: 121 SGL--CKL-WIFGNQLTSLPVL-----PPGLQELSVSDNQLA-SLPALPSELCK---LWA 168

Query: 457 SHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
            +N LT  +P+  S L+    L VS N L   +P    EL  L      +N L+  +P 
Sbjct: 169 YNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT-SLPA 218

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 82  NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV 141
             L    + L  L++  N L+    +P+ P   L  L VS N    ++P+        L+
Sbjct: 214 TSLPALPSGLKELIVSGNRLT---SLPVLPS-ELKELMVSGNRLT-SLPMLPS----GLL 264

Query: 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201
            L++ RN     +P S+  ++S   ++L  N L+ E           +         +  
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQA---LREITSAPGYSGPIIR 319

Query: 202 QLFYKKIYLRKLARLHLD-ANYCTGEIPKSLSNCSPLEGLYMSDNN 246
                    R+   LHL  A++         +           DN 
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (293), Expect = 6e-29
 Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 18/262 (6%)

Query: 132 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191
           EI     R     ++ +    ++ S      ++K LDLS N L+ +I    +     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
           L LS N L+  L  +   L  L  L L+ NY        L     +E L+ ++NN+   +
Sbjct: 63  LNLSSNVLYETLDLES--LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRV 114

Query: 252 PAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG-TLPSCSSHST-IQ 309
                      +I +A N +     L+    + ++ LDL  N I        ++ S  ++
Sbjct: 115 SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 310 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG 369
            ++L  N +Y  +K    F  + + TLDLS N  +  +    +    + ++ L NN L  
Sbjct: 173 HLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 370 EVPNQLCRLKQLRLIDLSNNNL 391
            +   L   + L   DL  N  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (290), Expect = 1e-28
 Identities = 71/390 (18%), Positives = 126/390 (32%), Gaps = 90/390 (23%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK 212
           +I     + N  K   ++ + L  +    L    +N++ L LS N L             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL------------- 46

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
                      +      L+  + LE L +S N LY      L +LS+L  + +  N++Q
Sbjct: 47  -----------SQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

Query: 273 GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
                E      +E L  + NNIS  +   S     + ++L+ N +   L+      RS 
Sbjct: 94  -----ELLVGPSIETLHAANNNIS-RVSC-SRGQGKKNIYLANNKITM-LRDLDEGCRSR 145

Query: 333 IVTLDLSYNSFSG-NIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           +  LDL  N     N          L +L L  N +  +V  Q+    +L+ +DLS+N L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL 203

Query: 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSI 451
                                                            + P+      +
Sbjct: 204 -----------------------------------------------AFMGPEFQSAAGV 216

Query: 452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511
             ++  +N L  +I  +    + +E  D+  N  +              V +VA   +  
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK- 273

Query: 512 KIPEWTAQFTTFKEDSYEGNPLLCGKPLPD 541
           K+     +  T     + G    C + LP 
Sbjct: 274 KLTGQNEEECTVPTLGHYGA--YCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 3e-25
 Identities = 48/287 (16%), Positives = 101/287 (35%), Gaps = 19/287 (6%)

Query: 10  FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYV 69
             N ++ K+     + +  +   +      + ++ + LSG+ +       L     LE +
Sbjct: 6   KQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 70  DFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNI 129
           + S + L  E  +  LE+ + L TL L NN +       +     ++TLH + N     +
Sbjct: 64  NLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 130 PLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL 189
                        + L+ N          G  + +++LDL  N++       L      L
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 190 EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG 249
           E+L L  N ++      ++   KL  L L +N     +     + + +  + + +N L  
Sbjct: 172 EHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-V 227

Query: 250 NIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
            I   L    +L    +  N       L         +  +++  + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 44/294 (14%), Positives = 92/294 (31%), Gaps = 34/294 (11%)

Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
                V+ +  +      +      +  L+LS N  +    + +     L+ L+LS N L
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC 234
             E  +  +     L  L L+ N +  +L         +  LH   N  +          
Sbjct: 71  Y-ETLD--LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNISRVSCSRGQG- 121

Query: 235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG-PIPLEFCQLNYLEILDLSEN 293
              + +Y+++N +        G  S +  + + +N +            + LE L+L  N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 294 NISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE 352
            I   +      + ++ + LS N L         F + + +  + L  N     I   + 
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 353 RLTRLRYLIL---------------ANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
               L +  L                N  ++      + +L      + +   L
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 1e-28
 Identities = 77/435 (17%), Positives = 149/435 (34%), Gaps = 75/435 (17%)

Query: 63  QHDLEYVDFS-DSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121
           Q+D  + D   D   +  +  +      N   +  +N+++                  + 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR----------------KLP 67

Query: 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEH 181
                          F ++  LNL+          +    ++++ L +  N +   +P H
Sbjct: 68  AALLDS---------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPH 117

Query: 182 LVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLE 238
           +      L  LVL  N   SL   +F+      KL  L +  N        +    + L+
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 239 GLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
            L +S N L  ++   L  + SL    ++ N L             +E LD S N+I+  
Sbjct: 175 NLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 225

Query: 299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLR 358
           +    +   +  + L  N L          N   +V +DLSYN     + +   ++ RL 
Sbjct: 226 VRGPVNVE-LTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTR 418
            L ++NN L   +      +  L+++DLS+N+L            +  N           
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL----------LHVERNQPQ-------- 322

Query: 419 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL 478
                 +++  + L  N +   +        +++ L  SHN+       +    + V   
Sbjct: 323 -----FDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRAL--FRNVARP 372

Query: 479 DVSYNNLNGKIPPQL 493
            V   + + KI  QL
Sbjct: 373 AVDDADQHCKIDYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (283), Expect = 2e-26
 Identities = 76/463 (16%), Positives = 152/463 (32%), Gaps = 61/463 (13%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
             + V    S +       L +   +E ++ +D  ++ E   +       +  L +  N+
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 110

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-G 159
           +                           +P  +    P L  L L RND + S+P  I  
Sbjct: 111 IR-------------------------YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLD 219
           +   L  L +S+N L   I +       +L+ L LS N L          +  L   ++ 
Sbjct: 145 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVS 200

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
            N  +     +L+    +E L  S N++          L+ L    +  N+L        
Sbjct: 201 YNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLT-DTA-WL 250

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHST--IQQVHLSKNMLYGPLKYGTFFNRSSIVTLD 337
                L  +DLS N +   +          ++++++S N L             ++  LD
Sbjct: 251 LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLD 307

Query: 338 LSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL-FGQIP 396
           LS+N    ++     +  RL  L L +N++   +         L+ + LS+N+     + 
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLR 363

Query: 397 GCLDNTSLHNNGDNDGSSAPTRYKG---------KPLNKMYGVDLSCNKLTGEIPPQIGK 447
               N +     D D                   KP        ++   +  ++    G+
Sbjct: 364 ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGR 423

Query: 448 LTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIP 490
            ++   +N   +    +       L+  E L+   N L  ++ 
Sbjct: 424 CSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 5e-23
 Identities = 57/382 (14%), Positives = 122/382 (31%), Gaps = 92/382 (24%)

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SL 199
           +++     +         +N+ K +   ++ +  ++P  L+     +E L L++     +
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLS 259
               F        + +L++  N      P    N   L  L +  N+             
Sbjct: 91  DTYAFAY---AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND------------- 134

Query: 260 SLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLY 319
                   ++ L   I   F     L  L +S NN+   +                    
Sbjct: 135 --------LSSLPRGI---FHNTPKLTTLSMSNNNLE-RIED------------------ 164

Query: 320 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLK 379
                 TF   +S+  L LS N  + ++   +  +  L +  ++ N L       L    
Sbjct: 165 -----DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPI 211

Query: 380 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG 439
            +  +D S+N++            +                     ++  + L  N LT 
Sbjct: 212 AVEELDASHNSI----------NVVRGP---------------VNVELTILKLQHNNLTD 246

Query: 440 EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVL 499
                +     +  ++ S+N L  ++   F  ++++E L +S N L   +      +  L
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 500 AVFSVAHNNLSGKIPEWTAQFT 521
            V  ++HN+L   +     QF 
Sbjct: 304 KVLDLSHNHLL-HVERNQPQFD 324

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.8 bits (207), Expect = 5e-17
 Identities = 53/262 (20%), Positives = 101/262 (38%), Gaps = 37/262 (14%)

Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC--SSHSTI 308
           I + L       D+ + +         E   LN  +I+    + +   LP+    S   +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE 368
           + ++L+   +   +    F    +I  L + +N+     P+  + +  L  L+L  N+L 
Sbjct: 78  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 369 GEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMY 428
                      +L  + +SNNNL            + ++              +    + 
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNL----------ERIEDDT------------FQATTSLQ 174

Query: 429 GVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK 488
            + LS N+LT  +      + S+   N S+N L+     + +    VE LD S+N++N  
Sbjct: 175 NLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV 226

Query: 489 IPPQLVELNVLAVFSVAHNNLS 510
             P  VEL +L    + HNNL+
Sbjct: 227 RGPVNVELTIL---KLQHNNLT 245

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 7e-25
 Identities = 66/410 (16%), Positives = 132/410 (32%), Gaps = 55/410 (13%)

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 148
           + L  L L    L    +  + P  HL+   V     +     E           +L   
Sbjct: 115 SQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 149 DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI 208
                    I D++     +L  + +   + ++      ++                K  
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI--------------LAKLQ 217

Query: 209 YLRKLARLHLDANYCTGEIPKSLSNC---SPLEGLYMSDNNLYGNI-----PAWLGNLSS 260
              KL+ L L+    T      +      + +    +S+  L G +          +L +
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 261 LNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSH-STIQQVHLSKNMLY 319
           L+   +  +    P    +   + + I + + +        C S  S    +  S N+L 
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 320 GPLKYGTFFNRSSIVTLDLSYNSFS--GNIPYWIERLTRLRYLILANNNLEGEVPNQLC- 376
               +    + + + TL L  N       I     ++  L+ L ++ N++  +     C 
Sbjct: 338 D-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 377 RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK 436
             K L  +++S+N L   I  CL    +                         +DL  NK
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLP-PRIKV-----------------------LDLHSNK 432

Query: 437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
           +   IP Q+ KL +++ LN + N L  V    F  L  ++ + +  N  +
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 44/362 (12%)

Query: 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201
            LN+S+N  +    S I  ++ L+ L +SHN++   +   +      LEYL LS N L  
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83

Query: 202 QLFYKKIYLRKLARLHLDAN-YCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSS 260
              +       L  L L  N +    I K   N S L+ L +S  +L  +    + +L+ 
Sbjct: 84  ISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 261 LNDIMMAINHLQGPIP---LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNM 317
              +++             L+      L I+  +       L          ++   K +
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 318 LYGPLKYGTFFNRSSIVT------LDLSYNSFSGNIPYWIERL---TRLRYLILANNNLE 368
           L            + + T      L L+    + N    I +L   T + Y  ++N  L+
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 369 GEVPNQL-----CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKP 423
           G++  +        LK L +  + ++          +                       
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI---------------------- 298

Query: 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
            + M   + + +           K++    L+FS+N LT  +  +  +L ++E+L +  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 484 NL 485
            L
Sbjct: 359 QL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIP 490
           ++S N ++      I  L+ +R L  SHN +  +    F   +++E LD+S+N L     
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86

Query: 491 PQLVELNVLAVFSVAHNNLS 510
              V L  L    ++ N   
Sbjct: 87  HPTVNLKHL---DLSFNAFD 103

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 63/322 (19%), Positives = 108/322 (33%), Gaps = 53/322 (16%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLT-GEIPEHLVIGCF 187
           +P  I         L L  N            +  L  L LS N L+          G  
Sbjct: 22  VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 188 NLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL-SNCSPLEGLYMSDNN 246
           +L+YL LS N +   +    + L +L  L    +        S+  +   L  L +S  +
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 247 LYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLE-FCQLNYLEILDLSENNISGTLPSCSS 304
                       LSSL  + MA N  Q     + F +L  L  LDLS+  +   L     
Sbjct: 138 T-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP--- 192

Query: 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN 364
                                 F + SS+  L++S+N+F     +  + L  L+ L  + 
Sbjct: 193 --------------------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 365 NNLEGEVPNQLCRL-KQLRLIDLSNNNLFGQIPGC-----------LDNTSLHNNGDNDG 412
           N++      +L      L  ++L+ N+       C            D   L    +   
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFA-----CTCEHQSFLQWIKDQRQLLVEVERME 287

Query: 413 SSAPTRYKGKPLNKMYGVDLSC 434
            + P+  +G P+     ++++C
Sbjct: 288 CATPSDKQGMPVLS---LNITC 306

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 51/273 (18%), Positives = 92/273 (33%), Gaps = 59/273 (21%)

Query: 222 YCTG----EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL--QGPI 275
            C       +P  +   S    L +  N L          L+ L  + ++ N L  +G  
Sbjct: 13  RCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 276 PLEFCQLNYLEILDLSENNISGTLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIV 334
                    L+ LDLS N +  T+ S       ++ +    + L    ++  F +  +++
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNN-LEGEVPNQLCRLKQLRLIDLSNNNLFG 393
            LD+S+             L+ L  L +A N+  E  +P+    L+ L  +DLS   L  
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-- 187

Query: 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIR 452
                                                         ++ P     L+S++
Sbjct: 188 ---------------------------------------------EQLSPTAFNSLSSLQ 202

Query: 453 ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
            LN SHNN   +    +  L  ++ LD S N++
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLK-GEFPNWLLENNTNLNTLVLRNN- 99
              ++L  + + +           L  +  S + L      +      T+L  L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 100 --SLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS 157
             ++S  F         L+ L    +  +      + +    L+YL++S         + 
Sbjct: 90  VITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNG 144

Query: 158 I-GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKL 213
           I   ++SL+ L ++ N         +     NL +L LS+     L    F     L  L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS---LSSL 201

Query: 214 ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
             L++  N             + L+ L  S N++
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 27/161 (16%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L  + +S +     F         LE +  + ++ +  F   +     NL  L L    
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           L                  +S   F              L  LN+S N+F          
Sbjct: 187 LE----------------QLSPTAFNS---------LSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCF-NLEYLVLSENSLH 200
           +NSL+ LD S N +     +  +     +L +L L++N   
Sbjct: 222 LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (255), Expect = 3e-23
 Identities = 66/382 (17%), Positives = 132/382 (34%), Gaps = 60/382 (15%)

Query: 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
             + Y++LS N       +S   +  L+FL +        I  +   G  +L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 198 SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI--PAWL 255
                         +  +L             + +  + LE L ++  NL G +    + 
Sbjct: 90  --------------QFLQLE----------TGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

Query: 256 GNLSSLNDIMMAINHLQGPIPLE-FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314
             L+SL  +++  N+++   P   F  +    +LDL+ N +                 + 
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---------------SIC 170

Query: 315 KNMLYG-PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373
           +  L     K+ T    SSI   D++             + T +  L L+ N  +  +  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 374 QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLS 433
           +         I     +    +     +T+  +            +KG   + +   DLS
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD-------PDNFTFKGLEASGVKTCDLS 283

Query: 434 CNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP- 491
            +K+   +   +    T +  L  + N +  +   +F  L  +  L++S N L G I   
Sbjct: 284 KSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSR 341

Query: 492 ---QLVELNVLAVFSVAHNNLS 510
               L +L VL    +++N++ 
Sbjct: 342 MFENLDKLEVL---DLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 73/453 (16%), Positives = 134/453 (29%), Gaps = 84/453 (18%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
           +  V LS + I            DL+++            N      ++L  L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-IPSSI-G 159
                             +    F G            L  L L++ + +G+ +  +   
Sbjct: 92  L----------------QLETGAFNG---------LANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARL 216
            + SL+ L L  N +    P    +       L L+ N   S+  +        +    L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLL 185

Query: 217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276
            L +                     M++  L           +S+  + ++ N  +  + 
Sbjct: 186 RLSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 336
             F        +     + S  + S   H+  +          G          S + T 
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK--DPDNFTFKG-------LEASGVKTC 280

Query: 337 DLSYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395
           DLS +     +   +    T L  L LA N +     N    L  L  ++LS N L    
Sbjct: 281 DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL---- 335

Query: 396 PGCLDNTSLHNNG-DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRA 453
                  S+ +   +N             L+K+  +DLS N +   +  Q    L +++ 
Sbjct: 336 ------GSIDSRMFEN-------------LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKE 375

Query: 454 LNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
           L    N L  V    F  L  ++ + +  N  +
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (250), Expect = 4e-23
 Identities = 64/336 (19%), Positives = 119/336 (35%), Gaps = 57/336 (16%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P ++    P    L+L  N           ++ +L  L L +N+++ +I          
Sbjct: 46  VPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVK 101

Query: 189 LEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
           LE L LS+N    L  ++       + L  L +  N  T       +  + +  + +  N
Sbjct: 102 LERLYLSKNQLKELPEKMP------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 246 NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSH 305
            L           S + +               F  +  L  + +++ NI+ T+P     
Sbjct: 156 PL---------KSSGIENGA-------------FQGMKKLSYIRIADTNIT-TIPQ-GLP 191

Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365
            ++ ++HL  N +   +   +    +++  L LS+NS S      +     LR L L NN
Sbjct: 192 PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 366 NLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN 425
            L  +VP  L   K ++++ L NNN+       + +      G N               
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNI-----SAIGSNDFCPPGYNTK-----------KA 293

Query: 426 KMYGVDLSCNKLT-GEIPPQI-GKLTSIRALNFSHN 459
              GV L  N +   EI P     +    A+   + 
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 61/339 (17%), Positives = 116/339 (34%), Gaps = 68/339 (20%)

Query: 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLD 219
            L+ +  S   L  ++P+ L     +   L L  N    +    F     L+ L  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDF---KNLKNLHTLILI 84

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
            N  +   P + +    LE LY+S N L   +P       +L ++ +  N +       F
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVF 141

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 339
             LN + +++L  N +  +                       ++ G F     +  + ++
Sbjct: 142 NGLNQMIVVELGTNPLKSS----------------------GIENGAFQGMKKLSYIRIA 179

Query: 340 YNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCL 399
             + +  IP  +     L  L L  N +       L  L  L  + LS N++       +
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-----SAV 231

Query: 400 DNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN 459
           DN SL N                    +  + L+ NKL  ++P  +     I+ +   +N
Sbjct: 232 DNGSLAN-----------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 460 NLTGV------IPVSFSNLKQVESLDVSYNNLN-GKIPP 491
           N++ +       P   +       + +  N +   +I P
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 55/309 (17%), Positives = 100/309 (32%), Gaps = 52/309 (16%)

Query: 47  LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFR 106
           L  + I         N  +L  +   ++ +  +           L  L L  N L     
Sbjct: 59  LQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK---- 113

Query: 107 MPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLK 165
                                 +P ++      L  L +  N+    +  S+   +N + 
Sbjct: 114 ---------------------ELPEKM---PKTLQELRVHENEIT-KVRKSVFNGLNQMI 148

Query: 166 FLDLSHNQLT-GEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDAN 221
            ++L  N L    I      G   L Y+ +++    ++   L         L  LHLD N
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP------PSLTELHLDGN 202

Query: 222 YCTGEIPK-SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
             T ++   SL   + L  L +S N++       L N   L ++ +  N L   +P    
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLA 260

Query: 281 QLNYLEILDLSENNIS-------GTLPSCSSHSTIQQVHLSKNML-YGPLKYGTFFNRSS 332
              Y++++ L  NNIS             +  ++   V L  N + Y  ++  TF     
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 333 IVTLDLSYN 341
              + L   
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 60/289 (20%), Positives = 105/289 (36%), Gaps = 49/289 (16%)

Query: 232 SNCS-PLEGLYMSDNNLY---GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEI 287
             C   L  +  SD  L     ++P     L       +  N +      +F  L  L  
Sbjct: 27  FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHT 80

Query: 288 LDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
           L L  N IS   P   +    +++++LSKN L   L         ++  L +  N  +  
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP---KTLQELRVHENEITKV 136

Query: 347 IPYWIERLTRLRYLILANNNLEGEV--PNQLCRLKQLRLIDLSNNNLFGQIP-GCLDN-T 402
                  L ++  + L  N L+           +K+L  I +++ N+   IP G   + T
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLT 195

Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNL 461
            LH                          L  NK+T ++       L ++  L  S N++
Sbjct: 196 ELH--------------------------LDGNKIT-KVDAASLKGLNNLAKLGLSFNSI 228

Query: 462 TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
           + V   S +N   +  L ++ N L  K+P  L +   + V  + +NN+S
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 58/277 (20%), Positives = 95/277 (34%), Gaps = 32/277 (11%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P EI    P    L+L  ND +         +  L  L L +N+++ +I E        
Sbjct: 48  VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103

Query: 189 LEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
           L+ L +S+N    +   L         L  L +  N          S    +  + M  N
Sbjct: 104 LQKLYISKNHLVEIPPNLP------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 246 NLY-GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS----GTLP 300
            L          +   LN + ++   L G IP +      L  L L  N I       L 
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLL 214

Query: 301 SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL 360
             S    + ++ L  N +   ++ G+     ++  L L  N  S  +P  +  L  L+ +
Sbjct: 215 RYSK---LYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 361 ILANNNLEGEVPNQLCRLK------QLRLIDLSNNNL 391
            L  NN+     N  C +           I L NN +
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 75/350 (21%), Positives = 122/350 (34%), Gaps = 60/350 (17%)

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN-- 197
           L  +  S      ++P  I        LDL +N ++ E+ +    G  +L  LVL  N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 198 -SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLG 256
             +H + F     LRKL +L++  N+   EIP +L   S L  L + DN +         
Sbjct: 91  SKIHEKAFSP---LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFS 144

Query: 257 NLSSLNDIMMAINHLQ-GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK 315
            L ++N I M  N L+             L  L +SE  ++  +P      T+ ++HL  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK-DLPETLNELHLDH 202

Query: 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL 375
           N +   ++       S +  L L +N         +  L  LR L L NN L   VP  L
Sbjct: 203 NKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 376 CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCN 435
             LK L+++ L  NN+          T +  N                            
Sbjct: 261 PDLKLLQVVYLHTNNI----------TKVGVN---------------------------- 282

Query: 436 KLTGEIPPQIGKLTSIRALNFSHNNLT--GVIPVSFSNLKQVESLDVSYN 483
                      K      ++  +N +    V P +F  +    ++     
Sbjct: 283 --DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 62/296 (20%), Positives = 104/296 (35%), Gaps = 39/296 (13%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPH-----WHLDTLH 119
           D   +D  ++++  E      +   +L  LVL NN +S      I          L  L+
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-----IHEKAFSPLRKLQKLY 108

Query: 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEI 178
           +SKN     IP  +      LV L +  N     +P  +   + ++  +++  N L    
Sbjct: 109 ISKNHLV-EIPPNL---PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 179 PEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPK-SLSNC 234
            E        L YL +SE     +   L         L  LHLD N     I    L   
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLP------ETLNELHLDHNKIQ-AIELEDLLRY 216

Query: 235 SPLEGLYMSDNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
           S L  L +  N +   I    L  L +L ++ +  N L   +P     L  L+++ L  N
Sbjct: 217 SKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTN 274

Query: 294 NIS-------GTLPSCSSHSTIQQVHLSKNML-YGPLKYGTFFNRSSIVTLDLSYN 341
           NI+         +      +    + L  N + Y  ++  TF   +  + +     
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 57/287 (19%), Positives = 99/287 (34%), Gaps = 46/287 (16%)

Query: 232 SNCSP-LEGLYMSDNNLY---GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEI 287
             C   L  +  SD  L      I      L       +  N +      +F  L +L  
Sbjct: 29  FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLD------LQNNDISELRKDDFKGLQHLYA 82

Query: 288 LDLSENNISGTLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 345
           L L  N IS  +     S    +Q++++SKN L   +        SS+V L +  N    
Sbjct: 83  LVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRK 137

Query: 346 NIPYWIERLTRLRYLILANNNL-EGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSL 404
                   L  +  + +  N L             +L  + +S   L          T +
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL----------TGI 187

Query: 405 HNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTG 463
             +        P       LN+++   L  NK+   I  +   + + +  L   HN +  
Sbjct: 188 PKD-------LPET-----LNELH---LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 464 VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
           +   S S L  +  L +  N L+ ++P  L +L +L V  +  NN++
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 59/309 (19%), Positives = 111/309 (35%), Gaps = 53/309 (17%)

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 148
             + +L L NN ++                ++S +  Q             L  L L+ N
Sbjct: 52  EAVKSLDLSNNRIT----------------YISNSDLQR---------CVNLQALVLTSN 86

Query: 149 DFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL----HGQL 203
             N +I       + SL+ LDLS+N L+  +         +L +L L  N         L
Sbjct: 87  GIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 204 FYKKIYLRKLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262
           F     L KL  L +       +I  K  +  + LE L +  ++L    P  L ++ +++
Sbjct: 145 FSH---LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 263 DIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPL 322
            +++ +      + +     + +E L+L + ++           T     LS       +
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDL----------DTFHFSELSTGETNSLI 251

Query: 323 KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLR 382
           K  TF N      + ++  S    +   + +++ L  L  + N L+        RL  L+
Sbjct: 252 KKFTFRN------VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 383 LIDLSNNNL 391
            I L  N  
Sbjct: 305 KIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.8 bits (236), Expect = 3e-21
 Identities = 57/340 (16%), Positives = 112/340 (32%), Gaps = 76/340 (22%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIY 209
           SIPS + +  ++K LDLS+N++T  I    +  C NL+ LVL+ N   ++    F     
Sbjct: 45  SIPSGLTE--AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSS--- 98

Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPA-WLGNLSSLNDIMMAI 268
           L  L  L L  NY +          S L  L +  N            +L+ L  + +  
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 269 NHLQGPIPLE-FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTF 327
                 I  + F  L +LE L++  +++  +                           + 
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEP-----------------------KSL 194

Query: 328 FNRSSIVTLDLSYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386
            +  ++  L L        +     +  + +  L L + +L+    ++L   +   LI  
Sbjct: 195 KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 387 SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG 446
                           +  N                         ++   L  ++   + 
Sbjct: 254 ---------------FTFRNV-----------------------KITDESLF-QVMKLLN 274

Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
           +++ +  L FS N L  V    F  L  ++ + +  N  +
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 14/242 (5%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L+++ L+ +GI+        +   LE++D S + L     +   +  ++L  L L  N 
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135

Query: 101 LSG-PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG 159
                          L  L V        I  +       L  L +  +D     P S+ 
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ--------LFYKKIYLR 211
            + ++  L L   Q    + E  V    ++E L L +  L                I   
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMAINH 270
               + +       ++ K L+  S L  L  S N L  ++P      L+SL  I +  N 
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312

Query: 271 LQ 272
             
Sbjct: 313 WD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 30/214 (14%)

Query: 285 LEILDLSENNISGTLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
           ++ LDLS N I+  + +        +Q + L+ N +   ++  +F +  S+  LDLSYN 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY 111

Query: 343 FSGNIPYWIERLTRLRYLILANNNLEGEVPNQL-CRLKQLRLIDLSNNNLFGQIP-GCLD 400
            S     W + L+ L +L L  N  +      L   L +L+++ + N + F +I      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHN 459
                                  L  +  +++  + L     P+    + ++  L     
Sbjct: 172 G----------------------LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMK 208

Query: 460 NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQL 493
               ++ +       VE L++   +L+     +L
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 62/407 (15%), Positives = 131/407 (32%), Gaps = 52/407 (12%)

Query: 123 NFFQGNIPLEIGVYFP--RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE 180
           N  +         +FP         +  +   +   S   + +L  LD  ++ +T ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 181 HLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240
             +     L  L+ + N++      +      L  L  D+N  T  +   ++  + L  L
Sbjct: 60  --IEKLTGLTKLICTSNNITTLDLSQ---NTNLTYLACDSNKLT-NLD--VTPLTKLTYL 111

Query: 241 YMSDNNLYGNIPAWLGNLSSLN---------DI-------MMAINHLQGPIPLEFCQLNY 284
               N L     +    L+ LN         D+        +  +  +    L+      
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ 171

Query: 285 LEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 344
           L  LD S N I+  L   S +  + +++   N +              +  LD S N  +
Sbjct: 172 LTTLDCSFNKIT-ELDV-SQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLT 225

Query: 345 GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG-QIPGCLDNTS 403
             I   +  LT+L Y   + N L  E+   +  L +L  +     +L    +        
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279

Query: 404 LHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTG 463
               G          +      ++Y +D     +T E+   + +   +  L  ++  LT 
Sbjct: 280 FQAEGCRKIKELDVTH----NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE 332

Query: 464 VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
              +  S+  +++SL     ++       + ++  L     A     
Sbjct: 333 ---LDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 79/451 (17%), Positives = 146/451 (32%), Gaps = 64/451 (14%)

Query: 85  LENNTNLNTLVLRNN---SLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV 141
            E    L +L   N+    ++G  ++       L  L  + N     + L        L 
Sbjct: 38  EEQLATLTSLDCHNSSITDMTGIEKLT-----GLTKLICTSNNIT-TLDLSQ---NTNLT 88

Query: 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201
           YL    N    ++   +  +  L +L+   N+LT ++          L YL  + N+L  
Sbjct: 89  YLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS---QNPLLTYLNCARNTL-- 139

Query: 202 QLFYKKIYLRKLARL-HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSS 260
                +I +    +L  LD +         ++  + L  L  S N +   +   +     
Sbjct: 140 ----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKL 192

Query: 261 LNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG 320
           LN +    N++     L+  Q   L  LD S N ++  +   +  + +     S N    
Sbjct: 193 LNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDV-TPLTQLTYFDCSVN---- 243

Query: 321 PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQ 380
           PL        S + TL          I   +   T+L Y          E+   +    Q
Sbjct: 244 PLTELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQ 298

Query: 381 LRLIDLSNNNL----FGQIPGCLDNTSLHNNG--DNDGSSAPTRYKGKPLNKMYGVDLSC 434
           L L+D     +      Q P  L    L+N    + D S            K+  +    
Sbjct: 299 LYLLDCQAAGITELDLSQNPK-LVYLYLNNTELTELDVSH---------NTKLKSLSCVN 348

Query: 435 NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG---KIPP 491
             +  +    +GK+ ++     +      +   + +N     ++     +  G    I P
Sbjct: 349 AHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

Query: 492 QLVELNVLAVFSVAHNNLSGKIPEWTAQFTT 522
               +   A  ++   NLS   P  T  FT+
Sbjct: 407 GDGGVYDQATNTITWENLSTDNPAVTYTFTS 437

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 61/331 (18%)

Query: 128 NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD--MNSLKFLDLSHNQLTGEIPEHLVIG 185
               +    + +     L   + N    S + +  +N    L L+   L+  +P++L   
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLNLS-SLPDNL--- 78

Query: 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
              +  L +++N+L                           +P+  ++   LE L   DN
Sbjct: 79  PPQITVLEITQNALI-------------------------SLPELPAS---LEYLDACDN 110

Query: 246 NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSH 305
            L   +P    +L  L+   +  N L   +P     L   E ++   N ++  LP   + 
Sbjct: 111 RL-STLPELPASLKHLD---VDNNQLTM-LPELPALL---EYINADNNQLT-MLPELPTS 161

Query: 306 STIQQVHLSKNMLYGPLKYGTFF--NRSSIVTLDLSYNSFSGNIPYWIERLTRLR----Y 359
             ++ + +  N L       TF      S+  LD+S N    ++P    R         +
Sbjct: 162 --LEVLSVRNNQL-------TFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 360 LILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRY 419
                N +   +P  +  L     I L +N L  +I   L   +   +            
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 420 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450
             +        D             + ++  
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.7 bits (235), Expect = 2e-20
 Identities = 67/360 (18%), Positives = 115/360 (31%), Gaps = 39/360 (10%)

Query: 50  SGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPI 109
           SG +A +               + +         L+      + L L   +LS    +P 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI---NQFSELQLNRLNLS---SLPD 76

Query: 110 QPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDL 169
                +  L +++N    ++P         L YL+   N  + ++P       SLK LD+
Sbjct: 77  NLPPQITVLEITQNALI-SLPELPA----SLEYLDACDNRLS-TLPELPA---SLKHLDV 127

Query: 170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229
            +NQLT  +PE        LEY+    N L   L         L  L +  N  T  +P+
Sbjct: 128 DNNQLT-MLPELPA----LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPE 177

Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAI----NHLQGPIPLEFCQLNYL 285
              +   LE L +S N L  ++PA         +  +      N +   IP     L+  
Sbjct: 178 LPES---LEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPT 232

Query: 286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 345
             + L +N +S +    S      Q       +Y  +  G   N       D     F  
Sbjct: 233 CTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDG-QQNTLHRPLADAVTAWFPE 290

Query: 346 NIPYWIERLT-RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSL 404
           N    + ++     +   AN        ++L      R        +   +     +  L
Sbjct: 291 NKQSDVSQIWHAFEHEEHANTFS--AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.6 bits (227), Expect = 1e-19
 Identities = 60/380 (15%), Positives = 112/380 (29%), Gaps = 104/380 (27%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFY-KKIYLR 211
           SI   I +  SL   +  +N ++              E   L   + +  +   K+  + 
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
           + + L L+    +  +P +L     +  L ++ N L  ++P    +L             
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNAL-ISLPELPASL------------- 102

Query: 272 QGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS 331
                         E LD  +N +S TLP                              +
Sbjct: 103 --------------EYLDACDNRLS-TLPE-----LP----------------------A 120

Query: 332 SIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           S+  LD+  N  +  +P   E    L Y+   NN L   +P     L+ L    + NN L
Sbjct: 121 SLKHLDVDNNQLT-MLP---ELPALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQL 172

Query: 392 FGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450
              +P   ++  +L                          D+S N L   +P    +   
Sbjct: 173 -TFLPELPESLEAL--------------------------DVSTNLLE-SLPAVPVRNHH 204

Query: 451 IR----ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
                       N +T  IP +  +L    ++ +  N L+ +I   L +      +    
Sbjct: 205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 507 NNLSGKIPEWTAQFTTFKED 526
              S    +         + 
Sbjct: 264 IYFSMSDGQQNTLHRPLADA 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 3e-21
 Identities = 54/267 (20%), Positives = 87/267 (32%), Gaps = 61/267 (22%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P  I        YLNL  N+       +   ++ L+ L L  N +  +I      G  +
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 189 LEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPK-SLSNCSPLEGLYMSD 244
           L  L L +N    +    F    YL KL  L L  N     IP  + +    L  L + +
Sbjct: 125 LNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180

Query: 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS 304
                        L  +++               F  L  L+ L+L   NI   +P    
Sbjct: 181 LK----------KLEYISEGA-------------FEGLFNLKYLNLGMCNIK-DMP---- 212

Query: 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN 364
                                       +  L++S N F    P     L+ L+ L + N
Sbjct: 213 ---------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 365 NNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           + +     N    L  L  ++L++NNL
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 36/263 (13%)

Query: 285 LEILDLSENNISGTLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
              L+L ENNI   + +        ++ + L +N +   ++ G F   +S+ TL+L  N 
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNW 134

Query: 343 FSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNT 402
            +       E L++LR L L NN +E        R+  L  +DL        I       
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS----EG 190

Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462
           +                    L  +  ++L    +     P +  L  +  L  S N+  
Sbjct: 191 AFEG-----------------LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

Query: 463 GVIPVSFSNLKQVESLDVSYNNLNGKIPPQ-LVELNVLAVFSVAHNNLSGKIPEWT-AQF 520
            + P SF  L  ++ L V  + ++  I       L  L   ++AHNNLS  +P       
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPL 289

Query: 521 TTFKEDSYEGNPLLCGKPLPDCD 543
               E     NP  C     DCD
Sbjct: 290 RYLVELHLHHNPWNC-----DCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 57/261 (21%), Positives = 94/261 (36%), Gaps = 41/261 (15%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
           +  Y++  ++N++         +  +L  L L  NS+                  +    
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR----------------QIEVGA 118

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLV 183
           F G            L  L L  N     IPS     ++ L+ L L +N +   IP +  
Sbjct: 119 FNG---------LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 184 IGCFNLEYLVLSEN----SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEG 239
               +L  L L E      +    F     L  L  L+L       ++P +L+    LE 
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEG---LFNLKYLNLGMCNIK-DMP-NLTPLVGLEE 222

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
           L MS N+     P     LSSL  + +  + +       F  L  L  L+L+ NN+S +L
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 300 PS--CSSHSTIQQVHLSKNML 318
           P    +    + ++HL  N  
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 43/215 (20%), Positives = 73/215 (33%), Gaps = 20/215 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            LE ++L  + I             L  ++  D+ L    P+   E  + L  L LRNN 
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP 158

Query: 101 LSGPFRMPIQPHW-----HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 155
           +       I  +       L  L + +      I          L YLNL   +    +P
Sbjct: 159 IES-----IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRK 212
            ++  +  L+ L++S N    EI      G  +L+ L +  +    +    F     L  
Sbjct: 213 -NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LAS 267

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
           L  L+L  N  +       +    L  L++  N  
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMP-IQPHWHLDTLHVSKNF 124
           L  +D  +            E   NL  L L   ++     MP + P   L+ L +S N 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNH 229

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
           F   I          L  L +  +  +    ++   + SL  L+L+HN L+  +P  L  
Sbjct: 230 FP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT 287

Query: 185 GCFNLEYLVLSENSLH 200
               L  L L  N  +
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 4e-21
 Identities = 61/268 (22%), Positives = 91/268 (33%), Gaps = 63/268 (23%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P  I         LNL  N       +S   +  L+ L LS N +   I      G  N
Sbjct: 58  VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 189 LEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL-SNCSPLEGLYMSD 244
           L  L L +N   ++    F    YL KL  L L  N     IP    +    L  L + +
Sbjct: 114 LNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169

Query: 245 NNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303
                 I       LS+L  + +A+ +L+  IP     L  L+ LDLS N++S  +    
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-AIRP-- 224

Query: 304 SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILA 363
                                                 SF G        L  L+ L + 
Sbjct: 225 -------------------------------------GSFQG--------LMHLQKLWMI 239

Query: 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
            + ++    N    L+ L  I+L++NNL
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 13/232 (5%)

Query: 285 LEILDLSENNISGTLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 343
             +L+L EN I     +   H   ++ + LS+N +   ++ G F   +++ TL+L  N  
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL 124

Query: 344 SGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-GCLDN- 401
           +         L++L+ L L NN +E        R+  LR +DL        I  G  +  
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 402 TSLH--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSH 458
           ++L   N    +    P      PL K+  +DLS N L+  I P     L  ++ L    
Sbjct: 185 SNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

Query: 459 NNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE-LNVLAVFSVAHNNL 509
           + +  +   +F NL+ +  +++++NNL   +P  L   L+ L    + HN  
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 6e-17
 Identities = 65/331 (19%), Positives = 107/331 (32%), Gaps = 87/331 (26%)

Query: 162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHL 218
           N    +      L  E+P+ +     N   L L EN    +    F    +LR L  L L
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQIIKVNSF---KHLRHLEILQL 95

Query: 219 DANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPL 277
             N+       + +  + L  L + DN L   IP      LS L ++ +  N ++  IP 
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIES-IPS 153

Query: 278 E-FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 336
             F ++  L  LDL E      +                         G F   S++  L
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISE-----------------------GAFEGLSNLRYL 190

Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
           +L+  +    IP  +  L +L  L L+ N+L    P     L  L+ + +  + +     
Sbjct: 191 NLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI----- 243

Query: 397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ-IGKLTSIRALN 455
                                                       I       L S+  +N
Sbjct: 244 ------------------------------------------QVIERNAFDNLQSLVEIN 261

Query: 456 FSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
            +HNNLT +    F+ L  +E + + +N  N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 53/261 (20%), Positives = 93/261 (35%), Gaps = 41/261 (15%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
           +   ++  ++ ++        ++  +L  L L  N +                  +    
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR----------------TIEIGA 107

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLV 183
           F G            L  L L  N    +IP+     ++ LK L L +N +   IP +  
Sbjct: 108 FNG---------LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 184 IGCFNLEYLVLSEN----SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEG 239
               +L  L L E      +    F     L  L  L+L       EIP +L+    L+ 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEG---LSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
           L +S N+L    P     L  L  + M  + +Q      F  L  L  ++L+ NN++  L
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 300 PS--CSSHSTIQQVHLSKNML 318
           P    +    ++++HL  N  
Sbjct: 271 PHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 20/215 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            LE ++LS + I            +L  ++  D+ L    PN      + L  L LRNN 
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP 147

Query: 101 LSGPFRMPIQPHW-----HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 155
           +       I  +       L  L + +      I          L YLNL+  +    IP
Sbjct: 148 IES-----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRK 212
            ++  +  L  LDLS N L+  I      G  +L+ L + ++    +    F     L+ 
Sbjct: 202 -NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---LQS 256

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
           L  ++L  N  T       +    LE +++  N  
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 41  QLESVKLSG---SGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLR 97
           +L+ + L       I +     + +   L  +D  +            E  +NL  L L 
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPS---LRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 98  NNSLSGPFRMP-IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS 156
             +L     +P + P   LD L +S N     I          L  L + ++       +
Sbjct: 194 MCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

Query: 157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200
           +  ++ SL  ++L+HN LT  +P  L     +LE + L  N  +
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 29/185 (15%), Positives = 52/185 (28%), Gaps = 57/185 (30%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
            +     +    +P  I   T  R L L  N ++    N    L+ L ++ LS N++   
Sbjct: 47  KVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRAL 454
             G  +                                               L ++  L
Sbjct: 104 EIGAFNG----------------------------------------------LANLNTL 117

Query: 455 NFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP----QLVELNVLAVFSVAHNNLS 510
               N LT +   +F  L +++ L +  N +   IP     ++  L  L    +      
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL---DLGELKRL 173

Query: 511 GKIPE 515
             I E
Sbjct: 174 SYISE 178

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 83/450 (18%), Positives = 151/450 (33%), Gaps = 71/450 (15%)

Query: 89  TNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144
           + L  L L +N +       F      +  L+ L VS N  Q NI          L +L+
Sbjct: 76  SELRVLRLSHNRIRSLDFHVF----LFNQDLEYLDVSHNRLQ-NISCCP---MASLRHLD 127

Query: 145 LSRNDFNGSIPSS--IGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ 202
           LS NDF+  +P     G++  L FL LS  +        +     +   L L    + G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 203 LFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN----- 257
              + + +     LHL  +  +    +   + + L  L +S+  L       L       
Sbjct: 187 ET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 258 -----LSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP------SCSSHS 306
                L ++    +           +F     +E L++    I+  +       S ++  
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 307 TIQQVHLSKNMLYGP-----------------------LKYGTFFNRSSIVTLDLSYNSF 343
           ++   H+   +                           +      + SS   L+ + N F
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 344 SGNIPYWIERLTRLRYLILANNNLE--GEVPNQLCRLKQLRLIDLSNNNL-------FGQ 394
           + ++      L RL+ LIL  N L+   +V      +  L  +D+S N+L          
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRAL 454
               +   +L +N            K K L      DL  N++   IP  +  L +++ L
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVL------DLHNNRIM-SIPKDVTHLQALQEL 478

Query: 455 NFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
           N + N L  V    F  L  ++ + +  N 
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.3 bits (211), Expect = 1e-17
 Identities = 67/428 (15%), Positives = 138/428 (32%), Gaps = 57/428 (13%)

Query: 81  PNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL 140
              +   N +L  L + +N L                          NI          L
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQ-------------------------NISCCP---MASL 123

Query: 141 VYLNLSRNDFNGSIPSS--IGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
            +L+LS NDF+  +P     G++  L FL LS  +        +     +   L L    
Sbjct: 124 RHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 199 LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN- 257
           + G    + + +     LHL  +  +    +   + + L  L +S+  L       L   
Sbjct: 183 IKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 258 ---------LSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP------SC 302
                    L ++    +           +F     +E L++    I+  +       S 
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 303 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLIL 362
           ++  ++   H+   +     +   +   + +    LS +             +   +L  
Sbjct: 302 TALKSLMIEHVKNQVFLFSKE-ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 363 ANNNLEGEVPNQLCRLKQLRLIDLSNNNL-----FGQIPGCLDNTSLHNNGDNDGSSAPT 417
             N     V      LK+L+ + L  N L        +   + +    +   N  +S   
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 418 RYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVES 477
                    +  ++LS N LTG +   +     ++ L+  +N +   IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 478 LDVSYNNL 485
           L+V+ N L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 64/367 (17%), Positives = 120/367 (32%), Gaps = 35/367 (9%)

Query: 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---S 198
            ++ S  +    +P  +      K L LS N ++ E+    +     L  L LS N   S
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS 90

Query: 199 LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP--AWLG 256
           L   +F      + L  L +  N         +++   L  L +S  N +  +P     G
Sbjct: 91  LDFHVFLF---NQDLEYLDVSHNRLQNISCCPMAS---LRHLDLS-FNDFDVLPVCKEFG 143

Query: 257 NLSSLNDIMMAINHLQGPIPLEFCQLN-YLEILDLSENNISGTLPSCSSHSTIQQVHLSK 315
           NL+ L  + ++    +    L    L+    +LDL   +I G             +HL  
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSG-------NIPYWIERLTRLRYLILANNNLE 368
           +            + +++  L LS    +             + R   L  + L +    
Sbjct: 204 HPNS-LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 369 GEVPNQL------CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG----DNDGSSAPTR 418
            +   +L        ++ L + +L+      +       T+L +       N        
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 419 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL 478
                  +M    LS +             +S   LNF+ N  T  +    S LK++++L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 479 DVSYNNL 485
            +  N L
Sbjct: 383 ILQRNGL 389

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 50/274 (18%), Positives = 85/274 (31%), Gaps = 42/274 (15%)

Query: 62  NQHDLEYVDFSDSNLKGEFPNWLLE--NNTNLNTLVLRNNSLSGPFRMPIQP--HWHLDT 117
               L+ +    + +        L     + L  L L N  ++G    P+       L+ 
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 118 LHVSKNFFQGNIPLEIGVYF---PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
           L++    +         +     P L  L++++          +    +L  LDLS N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 175 TGEIP--EHLVIGCF-NLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
            GE      L    F  L+ L L    +                        +G      
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGM---------------------ETPSGVCSALA 224

Query: 232 SNCSPLEGLYMSDNNLYGNIPA----WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEI 287
           +    L+GL +S N+L     A    W   L+SLN   ++   L+    +       L +
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN---LSFTGLKQ---VPKGLPAKLSV 278

Query: 288 LDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGP 321
           LDLS N +    PS      +  + L  N     
Sbjct: 279 LDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 47/268 (17%), Positives = 83/268 (30%), Gaps = 43/268 (16%)

Query: 139 RLVYLNLSRNDFNGSIPSS---IGDMNSLKFLDLSHNQLTGEIPEHLVIGCF-NLEYLVL 194
            L  L +        I      +  ++ L+ L L + ++TG  P  L+     +L  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 195 SENSLHGQLFY----KKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN 250
              S   +  +    ++     L  L +   +      + +     L  L +SDN   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 251 I-------PAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303
                   P     L  L      +    G           L+ LDLS N++     +  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-- 246

Query: 304 SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILA 363
                                 +    S + +L+LS+      +P  +    +L  L L+
Sbjct: 247 ---------------------PSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLS 282

Query: 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
            N L+   P     L Q+  + L  N  
Sbjct: 283 YNRLD-RNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 55/298 (18%), Positives = 91/298 (30%), Gaps = 29/298 (9%)

Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
           S  NC     + +            L  L    D    +      I     +   +    
Sbjct: 26  SAFNCLGAADVELYGGGRS------LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAAR 79

Query: 290 LSENNISGTLPSCSSHSTIQQVHLSKNMLYGP-LKYGTFFNRSSIVTLDLSYNSFSGNIP 348
           +    + G L      S +Q++ L    + G             +  L+L   S++    
Sbjct: 80  IPSRILFGAL-RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA 138

Query: 349 YWIE----RLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-------- 396
           +  E        L+ L +A  +       Q+     L  +DLS+N   G+          
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 397 --GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRA 453
               L   +L N G    S   +        ++ G+DLS N L            + + +
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 454 LNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511
           LN S   L  V     + L     LD+SYN L+    P   EL  +   S+  N    
Sbjct: 258 LNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 47/216 (21%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLE----NNTNLNTLVLR 97
           LE+++++G+      P       DL  ++  + +       WL E        L  L + 
Sbjct: 102 LENLEVTGTAP---PPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIA 157

Query: 98  NNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLE---IGVYFPRLVYLNLSRNDFN--- 151
                      ++    L TL +S N   G   L      + FP L  L L         
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 152 GSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLR 211
           G   +       L+ LDLSHN L              L  L LS   L  Q+   K    
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP--KGLPA 274

Query: 212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
           KL+ L L  N      P        +  L +  N  
Sbjct: 275 KLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 26/225 (11%)

Query: 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL---TRLRYLILAN 364
           ++ +    +      ++       S+  L +        I +   R+   + L+ L L N
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 365 NNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL 424
             + G  P  L       L  L+                L N       +     +    
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILN----------------LRNVSWATRDAWLAELQQWLK 148

Query: 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS----NLKQVESLDV 480
             +  + ++          Q+    ++  L+ S N   G   +  +        ++ L +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 481 SYNNLN---GKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTT 522
               +    G           L    ++HN+L       +  + +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 68/313 (21%), Positives = 106/313 (33%), Gaps = 62/313 (19%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P+ I         + L  N  +    +S     +L  L L  N L   I      G   
Sbjct: 26  VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 189 LEYLVLSEN----SLHGQLFYKKIYLRKLARLHLDANYCTGEIPK-SLSNCSPLEGLYMS 243
           LE L LS+N    S+    F+    L +L  LHLD      E+        + L+ LY+ 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHG---LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 244 DNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC 302
           DN L   +P     +L +L  + +  N +       F  L+ L+ L L +N ++  +   
Sbjct: 138 DNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP- 194

Query: 303 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLTRLRYLI 361
                                   F +   ++TL L  N+ S  +P      L  L+YL 
Sbjct: 195 ----------------------HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

Query: 362 LANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKG 421
           L +N    +     CR + L    L           C               S P R  G
Sbjct: 232 LNDNPWVCD-----CRARPLWA-WLQKFRGSSSEVPC---------------SLPQRLAG 270

Query: 422 KPLNKMYGVDLSC 434
           + L ++   DL  
Sbjct: 271 RDLKRLAANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 47/243 (19%), Positives = 74/243 (30%), Gaps = 58/243 (23%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIY 209
           ++P  I    + + + L  N+++  +P      C NL  L L  N    +    F     
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTG--- 78

Query: 210 LRKLARLHLDANYCTGEIPKS-LSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAI 268
           L  L +L L  N     +  +       L  L++    L   +   L             
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGL------------- 124

Query: 269 NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 328
                     F  L  L+ L L +N +   LP                         TF 
Sbjct: 125 ----------FRGLAALQYLYLQDNALQ-ALPD-----------------------DTFR 150

Query: 329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSN 388
           +  ++  L L  N  S         L  L  L+L  N +    P+    L +L  + L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 389 NNL 391
           NNL
Sbjct: 211 NNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 22/218 (10%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHW-----HLDTLH 119
             + +    + +    P        NL  L L +N L+      I          L+ L 
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-----IDAAAFTGLALLEQLD 86

Query: 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEI 178
           +S N    ++         RL  L+L R      +   +   + +L++L L  N L   +
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-AL 144

Query: 179 PEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCS 235
           P+       NL +L L  N   S+  + F     L  L RL L  N      P +  +  
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 236 PLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMAINHLQ 272
            L  LY+  NNL   +P   L  L +L  + +  N   
Sbjct: 202 RLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 37/242 (15%)

Query: 250 NIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC--SSHST 307
            IPA    +       +  N +       F     L IL L  N ++  + +   +  + 
Sbjct: 29  GIPAASQRIF------LHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILANNN 366
           ++Q+ LS N     +   TF     + TL L        +       L  L+YL L +N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 367 LEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNDGSSAPTRYKGKPLN 425
           L+    +    L  L  + L  N +            SL                     
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR------------------- 181

Query: 426 KMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
               + L  N++   + P     L  +  L    NNL+ +   + + L+ ++ L ++ N 
Sbjct: 182 ----LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 485 LN 486
             
Sbjct: 237 WV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 34/211 (16%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            L  + L  + +             LE +D SD+                L+TL L    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-G 159
           L                  +    F+G            L YL L  N    ++P     
Sbjct: 117 LQ----------------ELGPGLFRG---------LAALQYLYLQDNALQ-ALPDDTFR 150

Query: 160 DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARL 216
           D+ +L  L L  N+++  +PE    G  +L+ L+L +N    +H   F     L +L  L
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---LGRLMTL 206

Query: 217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
           +L AN  +    ++L+    L+ L ++DN  
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 7e-18
 Identities = 49/301 (16%), Positives = 99/301 (32%), Gaps = 29/301 (9%)

Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
           F   +  NL +     ++     ++NS+  +  +++ +   +    +    N+  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 74

Query: 197 NSLHGQLFYKKIY----LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP 252
           N L        I     L+ L  L LD N    ++  SL +   L+ L +  N +  +I 
Sbjct: 75  NKL------TDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGI-SDIN 125

Query: 253 AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
             L +L  L  + +  N +     L   +L  L+ L L +N IS  +   +  + +Q ++
Sbjct: 126 G-LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLY 181

Query: 313 LSKNML--YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE 370
           LSKN +     L         ++  L+L               L     +   + +L   
Sbjct: 182 LSKNHISDLRALA-----GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV 430
                    +   +         ++                     T+   +     Y V
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

Query: 431 D 431
           D
Sbjct: 297 D 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 7e-11
 Identities = 52/302 (17%), Positives = 103/302 (34%), Gaps = 33/302 (10%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           +     L    +  T        + ++ +  ++S++K       ++   N+  L L  N 
Sbjct: 22  ETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNK 76

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           L+     P+    +L  L + +N  +    L+      +L  L+L  N  +  I + +  
Sbjct: 77  LTDIK--PLTNLKNLGWLFLDENKIKDLSSLK---DLKKLKSLSLEHNGIS-DI-NGLVH 129

Query: 161 MNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLD 219
           +  L+ L L +N++T   +   L      L+ L L +N +   +      L KL  L+L 
Sbjct: 130 LPQLESLYLGNNKITDITVLSRLT----KLDTLSLEDNQISDIVPLAG--LTKLQNLYLS 183

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
            N+ + ++ ++L+    L+ L +              NL   N +      L  P  +  
Sbjct: 184 KNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 339
                    D  + N+   LP         +V           K    F+      L   
Sbjct: 242 DG-------DYEKPNVKWHLP-----EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEV 289

Query: 340 YN 341
           Y 
Sbjct: 290 YT 291

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 60/246 (24%), Positives = 91/246 (36%), Gaps = 41/246 (16%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIY 209
            IP ++    S K LDLS N L   +  +       L+ L LS     ++    +     
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--- 74

Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL-GNLSSLNDIMMAI 268
           L  L+ L L  N        + S  S L+ L   + NL  ++  +  G+L +L ++ +A 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAH 133

Query: 269 NHLQG-PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTF 327
           N +Q   +P  F  L  LE LDLS N I  ++                            
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC-----------------------TDL 169

Query: 328 FN----RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRL 383
                     ++LDLS N  +  I     +  RL+ L L  N L+        RL  L+ 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 384 IDLSNN 389
           I L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 30/237 (12%)

Query: 250 NIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHST 307
           N+P    NL  L+      N L+      F     L++LDLS   I  T+      S S 
Sbjct: 25  NLPFSTKNLD-LSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL 367
           +  + L+ N +   L  G F   SS+  L     + +    + I  L  L+ L +A+N +
Sbjct: 78  LSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 368 -EGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNK 426
              ++P     L  L  +DLS+N +       L    LH     + S             
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLS------------- 181

Query: 427 MYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
              +DLS N +   I P   K   ++ L    N L  V    F  L  ++ + +  N
Sbjct: 182 ---LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 20/192 (10%)

Query: 137 FPRLVYLNLSRNDFNGSIPSSIGD-MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195
           FP L  L+LSR +   +I       ++ L  L L+ N +   +      G  +L+ LV  
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 196 EN---SLHGQLFYKKIYLRKLARLHLDANYCTG-EIPKSLSNCSPLEGLYMSDNNLYGNI 251
           E    SL          L+ L  L++  N     ++P+  SN + LE L +S N +  +I
Sbjct: 109 ETNLASLENFPIGH---LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSI 164

Query: 252 PA----WLGNLSSLN-DIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSS 304
                  L  +  LN  + +++N +    P  F ++  L+ L L  N +  ++P      
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDR 222

Query: 305 HSTIQQVHLSKN 316
            +++Q++ L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 87  NNTNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY 142
           +   L  L L    +     G +    Q   HL TL ++ N  Q ++ L        L  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 143 LNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLV-IGCFNLEYLVLSEN--- 197
           L     +   S+ +   G + +LK L+++HN +              NLE+L LS N   
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 198 SLHGQLFYKKIYLRKLA-RLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPA-WL 255
           S++         +  L   L L  N     I         L+ L +  N L  ++P    
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIF 220

Query: 256 GNLSSLNDI 264
             L+SL  I
Sbjct: 221 DRLTSLQKI 229

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 39/171 (22%)

Query: 346 NIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLH 405
           N+P         + L L+ N L            +L+++DLS   +           ++ 
Sbjct: 25  NLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----------QTIE 68

Query: 406 NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGV 464
           +        A        L+ +  + L+ N +   +       L+S++ L     NL  +
Sbjct: 69  DG-------AYQS-----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 115

Query: 465 IPVSFSNLKQVESLDVSYNNLNGKIPP-----QLVELNVLAVFSVAHNNLS 510
                 +LK ++ L+V++N +            L  L  L    ++ N + 
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHL---DLSSNKIQ 162

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 83/501 (16%), Positives = 161/501 (32%), Gaps = 111/501 (22%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPI----QPHWHLDTLHV 120
           D++ +D     L       LL        + L +  L+      I    + +  L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 121 SKNFFQGN----IPLEIGVYFPRLVYLNLSRNDFN----GSIPSSIGDMNSLKFLDLSHN 172
             N         +   +     ++  L+L          G + S++  + +L+ L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 173 QLTGE----IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIP 228
            L       + E L+     LE L L   SL                           + 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--------------------SCEPLA 163

Query: 229 KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL 288
             L      + L +S+N++         N + +  +   +           CQ   LE L
Sbjct: 164 SVLRAKPDFKELTVSNNDI---------NEAGVRVLCQGLKDSP-------CQ---LEAL 204

Query: 289 DLSENNISGTLPSC-------SSHSTIQQVHLSKNMLYGP----LKYGTFFNRSSIVTLD 337
            L    ++    +C       +S ++++++ L  N L       L  G     S + TL 
Sbjct: 205 KLESCGVTSD--NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 338 LSYNSFS----GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL-----KQLRLIDLSN 388
           +     +    G++   +     L+ L LA N L  E    LC        QL  + + +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 389 NNLFGQIPGCLD-------NTSL------HNNGDNDGSSAPTRYKGKPLNKMYGVDLSCN 435
            +       C         N  L      +N  ++ G     +  G+P + +  + L+  
Sbjct: 323 CSFTAA--CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 436 KLTGE----IPPQIGKLTSIRALNFSHNNLT--GVIPVSFS---NLKQVESLDVSYNNLN 486
            ++      +   +    S+R L+ S+N L   G++ +  S       +E L +     +
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

Query: 487 G----------KIPPQLVELN 497
                      K  P L  ++
Sbjct: 441 EEMEDRLQALEKDKPSLRVIS 461

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 60/317 (18%), Positives = 109/317 (34%), Gaps = 42/317 (13%)

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI----YLRKLARL 216
           + +   +    + +T  + +        +  L      +        I    YL  L  L
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV------TTIEGVQYLNNLIGL 68

Query: 217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276
            L  N  T ++   L N + +  L +S N L  N+ A +  L S+  + +    +    P
Sbjct: 69  ELKDNQIT-DLA-PLKNLTKITELELSGNPL-KNVSA-IAGLQSIKTLDLTSTQITDVTP 124

Query: 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG--PLKYGTFFNRSSIV 334
           L    L+ L++L L  N I+  +   +  + +Q + +    +    PL      N S + 
Sbjct: 125 LA--GLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLA-----NLSKLT 176

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394
           TL    N  S +I   +  L  L  + L NN +    P  L     L ++ L+N  +  Q
Sbjct: 177 TLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232

Query: 395 IPGCLDNTSLHNN-GDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRA 453
                +N  + N      G+         P         +   LT  +   I  ++    
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIA------PATISDNGTYASPNLTWNLTSFINNVS---- 282

Query: 454 LNFSHNNLTGVIPVSFS 470
             F+ +       V FS
Sbjct: 283 YTFNQSVTFKNTTVPFS 299

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 44/282 (15%), Positives = 95/282 (33%), Gaps = 43/282 (15%)

Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAIN 269
           L    ++    +  T  +    ++   +  L      +   I   +  L++L  + +  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDN 73

Query: 270 HLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 329
            +    PL+   L  +  L+LS N +   + + +   +I+ + L+   +           
Sbjct: 74  QITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQI---TDVTPLAG 127

Query: 330 RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
            S++  L L  N  +   P  +  LT L+YL + N  +    P  L  L +L  +   +N
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 390 NLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT 449
            +   I       +L                         V L  N+++   P  +   +
Sbjct: 184 KI-SDISPLASLPNLIE-----------------------VHLKNNQISDVSP--LANTS 217

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
           ++  +  ++  +T       +NL      +V        I P
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 60/321 (18%), Positives = 115/321 (35%), Gaps = 40/321 (12%)

Query: 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ 173
           +   +   K+     +          +  L+        +I   +  +N+L  L+L  NQ
Sbjct: 20  NAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQ 74

Query: 174 LTGEIP-EHLVIGCFNLEYLVLSENSLHGQLFYKKI----YLRKLARLHLDANYCTGEIP 228
           +T   P ++L      +  L LS N L      K +     L+ +  L L +   T   P
Sbjct: 75  ITDLAPLKNLT----KITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 229 KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL 288
             L+  S L+ LY+  N +  NI   L  L++L  + +    +    PL    L+ L  L
Sbjct: 125 --LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTL 178

Query: 289 DLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
              +N IS  +   +S   + +VHL  N +          N S++  + L+  + +    
Sbjct: 179 KADDNKIS-DISPLASLPNLIEVHLKNNQI---SDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 349 YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG 408
           ++   L      ++   +     P  +           ++ NL   +   ++N S   N 
Sbjct: 235 FYNNNLVVP--NVVKGPSGAPIAPATI-----SDNGTYASPNLTWNLTSFINNVSYTFNQ 287

Query: 409 DNDGSSAPTRYKGK---PLNK 426
                +    + G    PL +
Sbjct: 288 SVTFKNTTVPFSGTVTQPLTE 308

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 36/230 (15%), Positives = 92/230 (40%), Gaps = 38/230 (16%)

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
            L     +   ++N++    + +    I  +      +            ++++ L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD 400
           N  + ++   ++ LT++  L L+ N L+    + +  L+ ++ +DL++  +   +     
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQI-TDVTPLAG 127

Query: 401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460
            ++L                         + L  N++T  I P +  LT+++ L+  +  
Sbjct: 128 LSNLQV-----------------------LYLDLNQIT-NISP-LAGLTNLQYLSIGNAQ 162

Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
           ++ + P   +NL ++ +L    N ++  I P L  L  L    + +N +S
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 50/302 (16%), Positives = 107/302 (35%), Gaps = 47/302 (15%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
               +    S +  T      +   +  +    + +        ++   NL  L L++N 
Sbjct: 20  NAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQ 74

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           ++     P++    +  L +S N  +    +        +  L+L+        P  +  
Sbjct: 75  ITDLA--PLKNLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQITDVTP--LAG 127

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
           +++L+ L L  NQ+T  I    + G  NL+YL +    +        +            
Sbjct: 128 LSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQV------SDL------------ 166

Query: 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
                     L+N S L  L   DN +  +I   L +L +L ++ +  N +    PL   
Sbjct: 167 --------TPLANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNNQISDVSPLA-- 214

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
             + L I+ L+   I  T      ++ +   ++ K     P+   T  +  +  + +L++
Sbjct: 215 NTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

Query: 341 NS 342
           N 
Sbjct: 273 NL 274

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 5e-14
 Identities = 47/267 (17%), Positives = 84/267 (31%), Gaps = 40/267 (14%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           IP ++       + L             +      L+ +++S N +   I   +      
Sbjct: 24  IPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 189 LEYLVLSEN----SLHGQLFYKKIYLRKLARLHLDANYCTGEIPK-SLSNCSPLEGLYMS 243
           L  + + +      ++ + F     L  L  L +        +P     +      L + 
Sbjct: 81  LHEIRIEKANNLLYINPEAFQN---LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQ 136

Query: 244 DNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC 302
           DN     I       LS                           IL L++N I     S 
Sbjct: 137 DNINIHTIERNSFVGLSFE-----------------------SVILWLNKNGIQEIHNSA 173

Query: 303 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLIL 362
            + + + +++LS N     L    F   S  V LD+S         Y +E L +LR    
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--AR 231

Query: 363 ANNNLEGEVPNQLCRLKQLRLIDLSNN 389
           +  NL+ ++P  L +L  L    L+  
Sbjct: 232 STYNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 61/327 (18%), Positives = 99/327 (30%), Gaps = 86/327 (26%)

Query: 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY 222
           S +      +++T EIP  L     N   L                   KL  +      
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPR---NAIELRFVLT--------------KLRVIQ----- 46

Query: 223 CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMA-INHLQGPIPLEFC 280
                  + S    LE + +S N++   I A    NL  L++I +   N+L    P  F 
Sbjct: 47  -----KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
            L  L+ L +S   I   LP                            +    V LD+  
Sbjct: 102 NLPNLQYLLISNTGIK-HLPD-----------------------VHKIHSLQKVLLDIQD 137

Query: 341 NSFSGNIPY-WIERLT-RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-G 397
           N     I       L+     L L  N ++ E+ N      QL  ++LS+NN   ++P  
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 398 CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNF 456
                                      +    +D+S  ++   +P      L  +RA   
Sbjct: 197 VFHG----------------------ASGPVILDISRTRIH-SLPSYGLENLKKLRAR-- 231

Query: 457 SHNNLTGVIPVSFSNLKQVESLDVSYN 483
           S  NL  +       L  +    ++Y 
Sbjct: 232 STYNLKKLPT--LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 29/212 (13%)

Query: 285 LEILDLSENNISGTLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
              L      +   +     S    ++++ +S+N +   ++   F N   +  + +   +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 343 FSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-GCLD 400
               I     + L  L+YL+++N  ++           Q  L+D+ +N     I      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460
             S                      +   + L+ N +  EI       T +  LN S NN
Sbjct: 151 GLS---------------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

Query: 461 -LTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
            L  +    F        LD+S   ++  +P 
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 42/255 (16%), Positives = 75/255 (29%), Gaps = 58/255 (22%)

Query: 64  HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHWHLDTLHVSK 122
            DLE ++ S +++       +  N   L+ + +   N+L                 +++ 
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL----------------YINP 97

Query: 123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEH 181
             FQ           P L YL +S       +P            LD+  N     I  +
Sbjct: 98  EAFQN---------LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 182 LVIGC-FNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240
             +G  F    L L++N +                          EI  S  N + L+ L
Sbjct: 148 SFVGLSFESVILWLNKNGIQ-------------------------EIHNSAFNGTQLDEL 182

Query: 241 YMSDNNLYGNIPA-WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
            +SDNN    +P       S    + ++   +          L  L             L
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KL 239

Query: 300 PSCSSHSTIQQVHLS 314
           P+      + +  L+
Sbjct: 240 PTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 35/187 (18%)

Query: 41  QLESVKLSGSGIHATFPKF-LYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNN 99
            LE +++S + +          N   L  +    +N          +N  NL  L++ N 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 100 SLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI- 158
            +                          ++P    ++  + V L++  N    +I  +  
Sbjct: 115 GIK-------------------------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 159 -GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLA 214
            G       L L+ N +  EI      G    E  +   N    L   +F+         
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG---ASGPV 205

Query: 215 RLHLDAN 221
            L +   
Sbjct: 206 ILDISRT 212

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 33/162 (20%)

Query: 335 TLDLSYNSFS---GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
                 +  +    ++P     L            L             L  I++S N++
Sbjct: 13  VFLCQESKVTEIPSDLPRNAIELR------FVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 392 FGQIP-GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLT 449
              I      N  L                   L+++       N L   I P+    L 
Sbjct: 67  LEVIEADVFSN--LPK-----------------LHEIR--IEKANNLL-YINPEAFQNLP 104

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
           +++ L  S+  +  +  V   +  Q   LD+  N     I  
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
                +K+T EIP  +    +   L F    L  +   +FS    +E +++S N++   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 490 PPQ----LVELNVL 499
                  L +L+ +
Sbjct: 71  EADVFSNLPKLHEI 84

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/258 (14%), Positives = 82/258 (31%), Gaps = 56/258 (21%)

Query: 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
           C   E   ++  ++   IP+   +  +L  I   +  +       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDI-QRIPSLPPSTQTLKLIETHLRTIP---SHAFSNLPNISRIYVSID 65

Query: 294 NISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIE 352
                L S                        +F+N S +  +++        I    ++
Sbjct: 66  VTLQQLES-----------------------HSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 353 RLTRLRYLILANNNLEGEVPNQ--LCRLKQLRLIDLSNNNLFGQIP-GCLDNTSLHNNGD 409
            L  L++L + N  L+   P+   +       ++++++N     IP              
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC------ 155

Query: 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN-LTGVIPVS 468
                          N+   + L  N  T  +       T + A+  + N  LT +   +
Sbjct: 156 ---------------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 469 FSNLKQV-ESLDVSYNNL 485
           F  +      LDVS  ++
Sbjct: 200 FGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 81/282 (28%)

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 148
            +  TL L    L                  +  + F            P +  + +S +
Sbjct: 31  PSTQTLKLIETHLR----------------TIPSHAFSN---------LPNISRIYVSID 65

Query: 149 DFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK 207
                + S    +++ +  +++ + +    I    +     L++L +    L        
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK------- 118

Query: 208 IYLRKLARLHLDANYCTGEIP--KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM 265
                               P    + +      L ++DN    +IP             
Sbjct: 119 ------------------MFPDLTKVYSTDIFFILEITDNPYMTSIPV------------ 148

Query: 266 MAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKY 324
            A   L           N    L L  N  + ++   + + + +  V+L+KN     +  
Sbjct: 149 NAFQGLC----------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 325 GTFFN-RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365
             F    S    LD+S  S +  +P     L  L+ LI  N 
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
             ++C  +   IP       S + L     +L  +   +FSNL  +  + VS +    ++
Sbjct: 16  FRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 490 PPQ----LVELNVLAVFSVAHNNLSGKIP 514
                  L ++  +    + +      I 
Sbjct: 72  ESHSFYNLSKVTHI---EIRNTRNLTYID 97

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 28/169 (16%)

Query: 354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-GCLDNTSLHNNGDNDG 412
               + L L   +L     +    L  +  I +S +    Q+      N           
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN----------- 78

Query: 413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSF-S 470
                      L+K+  +++   +    I P    +L  ++ L   +  L     ++   
Sbjct: 79  -----------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127

Query: 471 NLKQVESLDVSYNNLNGKIPPQLVE--LNVLAVFSVAHNNLSGKIPEWT 517
           +      L+++ N     IP    +   N      + +N  +  +  + 
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 34/212 (16%), Positives = 71/212 (33%), Gaps = 53/212 (25%)

Query: 276 PLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 335
            +   Q+N L  + L+  N++                L+       ++Y       +I  
Sbjct: 37  NITEAQMNSLTYITLANINVT---------------DLT------GIEYAH-----NIKD 70

Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395
           L ++    +   P  I  L+ L  L +   ++  +    L  L  L L+D+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALN 455
              ++                       L K+  +DLS N    +I P +  L  +++LN
Sbjct: 129 LTKINT----------------------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLN 165

Query: 456 FSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG 487
              + +         +  ++  L      + G
Sbjct: 166 IQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 33/160 (20%)

Query: 354 LTRLRYLILANNN---LEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 410
           +  L Y+ LAN N   L G     +     ++ + ++N +         +   +      
Sbjct: 43  MNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHA-------TNYNPISG---- 86

Query: 411 DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS 470
                        L+ +  + +    +T +  P +  LTS+  L+ SH+     I    +
Sbjct: 87  -------------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 471 NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510
            L +V S+D+SYN     I P L  L  L   ++  + + 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 58/221 (26%)

Query: 151 NGSIPSSIGDMNSLKFLDLSHNQLTGEIP-EHLVIGCFNLEYLVLSENSLHGQLFYKKIY 209
           + +   +   MNSL ++ L++  +T     E+      N++ L ++              
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDLTGIEYAH----NIKDLTINNIHA------TNY- 81

Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAIN 269
                                +S  S LE L +   ++  +    L  L+SL  + ++ +
Sbjct: 82  -------------------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 270 HLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 329
                I  +   L  +  +DLS N     +             L                
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMP-----------LKTL------------- 158

Query: 330 RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE 370
              + +L++ ++         IE   +L  L   +  + G+
Sbjct: 159 -PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 24/191 (12%)

Query: 69  VDFSDSNLKGEFPNWLLENN---------TNLNTLVLRNN---SLSGPFRMPIQPHWHLD 116
           V+  DS  K      L +++          +L  + L N     L+G     I+   ++ 
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIK 69

Query: 117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG 176
            L ++        P+        L  L +   D       ++  + SL  LD+SH+    
Sbjct: 70  DLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 177 EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP 236
            I   +      +  + LS N     +   K  L +L  L++  +         + +   
Sbjct: 127 SILTKIN-TLPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 237 LEGLYMSDNNL 247
           L  LY     +
Sbjct: 183 LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIP 490
            ++    T    P I  L+++  L     ++T     + S L  +  LD+S++  +  I 
Sbjct: 72  TINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 491 PQLVELNVLAVFSVAHNNLSGKI 513
            ++  L  +    +++N     I
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            ++ + ++      T    +    +LE +     ++  +     L   T+L  L + +++
Sbjct: 67  NIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSA 123

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNI-PLEIGVYFPRLVYLNLSRNDFNGSIPSSIG 159
                   I     ++++ +S N    +I PL+     P L  LN+  +  +      I 
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLK---TLPELKSLNIQFDGVHDY--RGIE 178

Query: 160 DMNSLKFLDLSHNQLTGE 177
           D   L  L      + G+
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483
           +N +  + L+   +T ++   I    +I+ L  ++ + T   P   S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 484 NLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515
           ++     P L  L  L +  ++H+     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
               +D S +NL      W     TNL++L+L +N L+                 +S   
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------------FISSEA 83

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLV 183
           F            P L YL+LS N  + ++   +  D+ +L+ L L +N +   +  +  
Sbjct: 84  FVP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 184 IGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPL--E 238
                L+ L LS+N       +L      L KL  L L +N         L         
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 239 GLYMSDNNL 247
           GLY+ +N L
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 25/180 (13%)

Query: 285 LEILDLSENNISGTLPSCSSH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
             +LDLS NN+S      +    + +  + LS N L   +    F    ++  LDLS N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH 99

Query: 343 FSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN 401
               +  ++   L  L  L+L NN++     N    + QL+ + LS N +          
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI---------- 148

Query: 402 TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFS-HNN 460
           +        DG+          L K+  +DLS NKL       + KL +        HNN
Sbjct: 149 SRFPVELIKDGNK---------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMAINHLQGPIPLE-FCQLN 283
            +P+SL   S    L +S NNL      W    L++L+ ++++ NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 284 YLEILDLSENNISGTLPSCSSHST--IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 341
            L  LDLS N++  TL          ++ + L  N +   +    F + + +  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQN 146

Query: 342 SFSGNIP----YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRL--IDLSNNNL 391
             S   P        +L +L  L L++N L+      L +L       + L NN L
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 46/219 (21%), Positives = 79/219 (36%), Gaps = 44/219 (20%)

Query: 335 TLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ-LCRLKQLRLIDLSNNNLFG 393
            L  S      N+P  +   T    L L++NNL          RL  L  + LS+N+L  
Sbjct: 22  ILSCSKQQLP-NVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-N 77

Query: 394 QIP-GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSI 451
            I                             +  +  +DLS N L   +   +   L ++
Sbjct: 78  FISSEAFVP----------------------VPNLRYLDLSSNHLH-TLDEFLFSDLQAL 114

Query: 452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ----LVELNVLAVFSVAHN 507
             L   +N++  V   +F ++ Q++ L +S N ++ + P +      +L  L +  ++ N
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

Query: 508 NLSGKIPEWTAQFTTFKEDSY---EGNPLLCGKPLPDCD 543
            L  K+P    Q       +      NPL C     DC 
Sbjct: 174 KLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC-----DCK 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 14/185 (7%)

Query: 89  TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 148
            +   L L  N L       + P+  L  L++ +        L++    P L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 149 DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFY 205
               S+P     + +L  LD+S N+LT  +P   + G   L+ L L  N   +L   L  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 206 KKIYLRKLARLHLDANYCTGEIPKSL-SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDI 264
                 KL +L L  N  T E+P  L +    L+ L + +N+LY  IP        L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 265 MMAIN 269
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 29/191 (15%)

Query: 285 LEILDLSENNISGTLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 343
             IL LSEN +     +     T + Q++L +  L    K         + TLDLS+N  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQL 89

Query: 344 SGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS 403
             ++P   + L  L  L ++ N L       L  L +L+ + L  N L    PG L    
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--- 145

Query: 404 LHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLT 462
                              P  K+  + L+ N LT E+P  +   L ++  L    N+L 
Sbjct: 146 -------------------PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 463 GVIPVSFSNLK 473
            +    F +  
Sbjct: 186 TIPKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 42/193 (21%)

Query: 325 GTFFNRSSIVTLDLSYNSFS---GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQL 381
                 +S + ++    + +    ++P           L L+ N L       L    +L
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI 441
             ++L    L          T L  +G               L  +  +DLS N+L   +
Sbjct: 58  TQLNLDRAEL----------TKLQVDG--------------TLPVLGTLDLSHNQLQ-SL 92

Query: 442 PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP----QLVELN 497
           P     L ++  L+ S N LT +   +   L +++ L +  N L   +PP       +L 
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151

Query: 498 VLAVFSVAHNNLS 510
            L   S+A+NNL+
Sbjct: 152 KL---SLANNNLT 161

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 46/307 (14%), Positives = 95/307 (30%), Gaps = 68/307 (22%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144
            +         L+  S++                          +          +  + 
Sbjct: 20  DDAFAETIKDNLKKKSVTDA------------------------VTQN---ELNSIDQII 52

Query: 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLF 204
            + +D   S+   I  + ++  L L+ N+LT +I    +    NL +L L EN +     
Sbjct: 53  ANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKV----- 102

Query: 205 YKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDI 264
            K +                     SL +   L+ L +  N +  +I   L +L  L  +
Sbjct: 103 -KDL--------------------SSLKDLKKLKSLSLEHNGI-SDING-LVHLPQLESL 139

Query: 265 MMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
            +  N +     L   +L  L+ L L +N IS  +   +  + +Q ++LSKN +      
Sbjct: 140 YLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHI---SDL 193

Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI 384
                  ++  L+L               L     +   + +L    P  +         
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKP 251

Query: 385 DLSNNNL 391
           ++  +  
Sbjct: 252 NVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 39/255 (15%), Positives = 91/255 (35%), Gaps = 38/255 (14%)

Query: 231 LSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL 290
               +      +   ++   +      L+S++ I+   + ++    ++   L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 291 SENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 350
           + N ++  +   ++   +  + L +N +       +  +   + +L L +N  S +I   
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 351 IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 410
           +  L +L  L L NN +  ++   L RL +L  + L +N +   I      T L N    
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQN---- 182

Query: 411 DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS 470
                              + LS N ++ ++   +  L ++  L               S
Sbjct: 183 -------------------LYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 471 NLKQVESLDVSYNNL 485
           NL    ++  +  +L
Sbjct: 222 NLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 43/234 (18%), Positives = 90/234 (38%), Gaps = 21/234 (8%)

Query: 66  LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFF 125
           ++ +  ++S++K       ++   N+  L L  N L+     P+    +L  L + +N  
Sbjct: 48  IDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV 102

Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVI 184
           +    L+      +L  L+L  N  +  I + +  +  L+ L L +N++T   +   L  
Sbjct: 103 KDLSSLK---DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLT- 156

Query: 185 GCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244
               L+ L L +N +   +      L KL  L+L  N+ + ++ ++L+    L+ L +  
Sbjct: 157 ---KLDTLSLEDNQISDIVPLAG--LTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFS 209

Query: 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
                       NL   N +      L  P  +        E  ++  +    T
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPEFT 261

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 53/356 (14%), Positives = 107/356 (30%), Gaps = 87/356 (24%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPI----QPHWHLDTLHVSKNFFQGNIPLEIG------ 134
           L  + ++  +VL  N++       +         L+    S  F  G +  EI       
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLL 86

Query: 135 ----VYFPRLVYLNLSRNDFNGSIPSSIGDM----NSLKFLDLSHNQLTGEIPEHLVIGC 186
               +  P+L  + LS N F  +    + D       L+ L L +N L  +         
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-------AG 139

Query: 187 FNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGE----IPKSLSNCSPLEGLYM 242
                  ++       +  K      L  +    N           K+  +   L  + M
Sbjct: 140 -----AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 243 SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI------- 295
             N         +      + ++  + + Q            L++LDL +N         
Sbjct: 195 VQNG--------IRPEGIEHLLLEGLAYCQE-----------LKVLDLQDNTFTHLGSSA 235

Query: 296 -SGTLPSCSSHSTIQQVHLSKNMLYGP--------LKYGTFFNRSSIVTLDLSYNSFSGN 346
            +  L S      ++++ L+  +L                      + TL L YN    +
Sbjct: 236 LAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLEN---IGLQTLRLQYNEIELD 289

Query: 347 IPYWI-----ERLTRLRYLILANNNL--EGEVPNQLCRL----KQLRLIDLSNNNL 391
               +     E++  L +L L  N    E +V +++  +     +  L +L +   
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 51/295 (17%), Positives = 96/295 (32%), Gaps = 57/295 (19%)

Query: 140 LVYLNLSRNDFNG----SIPSSIGDMNSLKFLDLSHNQLTGE----IPEHLVIGCFNLEY 191
           +   +L  +        S+ + + + +S+K + LS N +  E    + E++     +LE 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-SKKDLEI 64

Query: 192 LVLSENSLHGQLFYKK-----------IYLRKLARLHLDANYCTGE----IPKSLSNCSP 236
              S+    G++  +            +   KL  + L  N         +   LS  +P
Sbjct: 65  AEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
           LE LY+ +N L G              I  A+  L      +      L  +    N + 
Sbjct: 124 LEHLYLHNNGL-GPQAG--------AKIARALQELAVNKKAKNAP--PLRSIICGRNRLE 172

Query: 297 --GTLPSCS---SHSTIQQVHLSKNMLY-----GPLKYGTFFNRSSIVTLDLSYNSFSGN 346
                       SH  +  V + +N +        L  G  +    +  LDL  N+F+  
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHL 231

Query: 347 ----IPYWIERLTRLRYLILANNNLEGEVPNQLCRL------KQLRLIDLSNNNL 391
               +   ++    LR L L +  L       +           L+ + L  N +
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 46/369 (12%), Positives = 107/369 (28%), Gaps = 104/369 (28%)

Query: 163 SLKFLDLSHNQLTGEIPEHLVIG---CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLD 219
           S++   L  + +T E  + +        +++ +VLS N++                    
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-------------------- 44

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
                  + +++++   LE    SD             L  L   +              
Sbjct: 45  GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL-------------- 90

Query: 280 CQLNYLEILDLSENNIS--GTLPSC---SSHSTIQQVHLSKN------------MLYGPL 322
            +   L  + LS+N        P     S H+ ++ ++L  N             L    
Sbjct: 91  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 323 KYGTFFNRSSIVTLDLSYNSF-SGNIPYWIERL---TRLRYLILANNNLEGE-VPNQLCR 377
                 N   + ++    N   +G++  W +       L  + +  N +  E + + L  
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 378 L----KQLRLIDLSNNNLFG-----QIPGCL-DNTSLHNNGDNDGSSAPTRYKGKPLNKM 427
                ++L+++DL +N  F       +   L    +L                       
Sbjct: 211 GLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRE--------------------- 248

Query: 428 YGVDLSCNKLTGEIPPQIGKL------TSIRALNFSHNNLT--GVIPVSFS---NLKQVE 476
             + L+   L+      +           ++ L   +N +    V  +       +  + 
Sbjct: 249 --LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306

Query: 477 SLDVSYNNL 485
            L+++ N  
Sbjct: 307 FLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 35/202 (17%), Positives = 56/202 (27%), Gaps = 41/202 (20%)

Query: 84  LLENNTNLNTLVLRNNSLS-------------GPFRMPIQPHWHLDTLHVSKNFFQGNIP 130
            L  +T L  L L NN L                     +    L ++   +N  +    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 131 LEIGVYF---PRLVYLNLSRNDFN-----GSIPSSIGDMNSLKFLDLSHNQLTGE----I 178
            E    F     L  + + +N          +   +     LK LDL  N  T      +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 179 PEHLVIGCFNLEYLVLSENSLHGQ--------LFYKKIYLRKLARLHLDANYCTGE---- 226
              L     NL  L L++  L  +            K+    L  L L  N    +    
Sbjct: 237 AIALK-SWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNEIELDAVRT 293

Query: 227 IPKSL-SNCSPLEGLYMSDNNL 247
           +   +      L  L ++ N  
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRF 315

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 26/217 (11%)

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIP-EHLVIGCFNLEYLVLSENSLHGQLFYKKI----YL 210
                + +    +L    +T  +  + L      ++      +++      + +    + 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELS----GVQNFNGDNSNI------QSLAGMQFF 62

Query: 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH 270
             L  LHL  N  + ++   L + + LE L ++ N L  N+       + L+ + +  N 
Sbjct: 63  TNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRL-KNLNG--IPSACLSRLFLDNNE 117

Query: 271 LQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR 330
           L+    L    L  LEIL +  N +  ++      S ++ + L  N +      G     
Sbjct: 118 LRDTDSLI--HLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRL 171

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL 367
             +  +DL+          +   L     +   +   
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 42/219 (19%), Positives = 79/219 (36%), Gaps = 37/219 (16%)

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
            L      +L + +++  L S    S +Q  +   + +            +++  L LS+
Sbjct: 17  GLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLSH 72

Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD 400
           N  S ++   ++ LT+L  L +  N L+         L +L    L NN L        D
Sbjct: 73  NQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNEL-------RD 120

Query: 401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460
             SL +                 L  +  + +  NKL   I   +G L+ +  L+   N 
Sbjct: 121 TDSLIH-----------------LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNE 161

Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVL 499
           +T       + LK+V  +D++      +      EL + 
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 39/237 (16%), Positives = 70/237 (29%), Gaps = 66/237 (27%)

Query: 60  LYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH 119
                +    +    ++         +  + +      N+++             L  + 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQ-----------SLAGMQ 60

Query: 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIP 179
                           +F  L  L+LS N    S  S + D+  L+ L ++ N+L   + 
Sbjct: 61  ----------------FFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNRLK-NLN 101

Query: 180 EHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEG 239
               I    L  L L  N L                              SL +   LE 
Sbjct: 102 G---IPSACLSRLFLDNNEL--------------------------RDTDSLIHLKNLEI 132

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
           L + +N L  +I   LG LS L  + +  N +     L   +L  +  +DL+     
Sbjct: 133 LSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 20/208 (9%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            +++     S I +     +    +L+ +  S + +  +     L++ T L  L +  N 
Sbjct: 42  GVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNR 96

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           L     +   P   L  L +  N  +    L    +   L  L++  N         +G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNN--KLKSIVMLGF 148

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH-LD 219
           ++ L+ LDL  N++T       +     + ++ L+      +    +  L     +   D
Sbjct: 149 LSKLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
             + +   P  +SN        +     
Sbjct: 206 GRWIS---PYYISNGGSYVDGCVLWELP 230

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 26/169 (15%)

Query: 89  TNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144
           T L  L L +N L     G F+        L+TL V+ N  Q  +P+ +      L  L 
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKN----LETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 145 LSRNDFNGSIPSSIGD-MNSLKFLDLSHNQLTGEIPEHLVIGCF----NLEYLVLSEN-- 197
           L RN    S+P  + D +  L +L L +N+L   +P+    G F    +L+ L L  N  
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK----GVFDKLTSLKELRLYNNQL 169

Query: 198 -SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
             +    F K   L +L  L LD N        +  +   L+ L + +N
Sbjct: 170 KRVPEGAFDK---LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 215 RLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL-GNLSSLNDIMMAINHLQG 273
           +L L +N  +    K+    + L  LY++DN L   +PA +   L +L  + +  N LQ 
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 274 PIPLE-FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
            +P+  F QL  L  L L  N +  +LP                          F + + 
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLK-SLPP-----------------------RVFDSLTK 134

Query: 333 IVTLDLSYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           +  L L YN    ++P  + ++LT L+ L L NN L+        +L +L+ + L NN L
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 392 FGQIPGCLDNTS------LHNN 407
                G  D+        L  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 30/203 (14%)

Query: 285 LEILDLSENNISGTLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 343
            + LDL  N +S          T ++ ++L+ N L   L  G F    ++ TL ++ N  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 344 SGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNT 402
              +P  + ++L  L  L L  N L+   P     L +L  + L  N L           
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL----------Q 146

Query: 403 SLHNNG-DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNN 460
           SL     D              L  +  + L  N+L   +P     KLT ++ L   +N 
Sbjct: 147 SLPKGVFDK-------------LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 461 LTGVIPVSFSNLKQVESLDVSYN 483
           L  V   +F +L++++ L +  N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 55/244 (22%), Positives = 86/244 (35%), Gaps = 65/244 (26%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIY 209
           +IPS+I      K LDL  N+L+  +P         L  L L++N   +L   +F +   
Sbjct: 30  AIPSNIPA--DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE--- 83

Query: 210 LRKLARLHLDANYCT---GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMM 266
           L+ L  L +  N        +   L N   L  L +  N L  ++P  +           
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQL-KSLPPRV----------- 128

Query: 267 AINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326
                       F  L  L  L L  N +  +LP                        G 
Sbjct: 129 ------------FDSLTKLTYLSLGYNELQ-SLPK-----------------------GV 152

Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID 385
           F   +S+  L L  N     +P    ++LT L+ L L NN L+         L++L+++ 
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 386 LSNN 389
           L  N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 34/168 (20%)

Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANN---NLEGEVPNQLCRLKQLRLIDLSNNNL- 391
           LDL  N  S        RLT+LR L L +N    L   +  +L  L+ L    +++N L 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL---WVTDNKLQ 98

Query: 392 ------FGQIPGCLDNTSLHNN-------GDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT 438
                 F Q    L    L  N          D            L K+  + L  N+L 
Sbjct: 99  ALPIGVFDQ-LVNLAELRLDRNQLKSLPPRVFDS-----------LTKLTYLSLGYNELQ 146

Query: 439 GEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
             +P  +  KLTS++ L   +N L  V   +F  L ++++L +  N L
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 62/399 (15%), Positives = 122/399 (30%), Gaps = 106/399 (26%)

Query: 84  LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYL 143
                  + +L L  N+L     + +     +     +                  +  L
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVEL-----IQAFANTP---------------ASVTSL 56

Query: 144 NLSRNDFNGSIPSSIGDM-----NSLKFLDLSHNQLTGE----IPEHLVIGCFNLEYLVL 194
           NLS N         +  +      ++  L+LS N L+ +    + + L    F +  L L
Sbjct: 57  NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC-SPLEGLYMSDNNLYGNIPA 253
             N    +                     + E  ++ SN  + +  L +  N+L G   +
Sbjct: 117 GWNDFSSK--------------------SSSEFKQAFSNLPASITSLNLRGNDL-GIKSS 155

Query: 254 WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI--------SGTLPSCSSH 305
                  L  I+ AI             +     L+L  NN+        +  L S    
Sbjct: 156 -----DELIQILAAIP----------ANV---NSLNLRGNNLASKNCAELAKFLASI--P 195

Query: 306 STIQQVHLSKNML----YGPLKYGTFFNRSSIVTLDLSYNSFSG----NIPYWIERLTRL 357
           +++  + LS N+L    Y  L Y      + +V+L+L  N   G    N+    + L  L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 358 RYLILANNNLEGEVPNQ-------LCRLKQLRLIDLSNNNLFG----------QIPGC-L 399
           + + L  + ++     Q          ++++ L+D +   +            +      
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 400 DNTSLHNNGDNDGSSAPTRYKGKPLNK-MYGVDLSCNKL 437
           D  SL N          T  +   +   +     +C  L
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 51/249 (20%)

Query: 284 YLEILDLSENNISGT--------LPSCSSHSTIQQVHLSKNMLYGP----LKYGTFFNRS 331
            +  L+LS N++           L +    + +  ++LS N L       L         
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 332 SIVTLDLSYNSFSGN-IPYWIERL----TRLRYLILANNNLEGEVPNQLCRL-----KQL 381
           +I  LDL +N FS      + +        +  L L  N+L  +  ++L ++       +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 382 RLIDLSNNNLFGQIPGCLD--------NTSL------HNNGDNDGSSAPTRYKGKPLNKM 427
             ++L  NNL      C +          S+       N       +          N +
Sbjct: 170 NSLNLRGNNL--ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 428 YGVDLSCNKLTGEIPPQIGKL----TSIRALNFSHNNLTGVIPV-------SFSNLKQVE 476
             ++L  N L G     +  L      ++ +   ++ +  +          +F N++++ 
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287

Query: 477 SLDVSYNNL 485
            +D +   +
Sbjct: 288 LVDKNGKEI 296

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 25/155 (16%)

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNN 390
            +I  + L  N+     P       +LR + L+NN +    P+    L+ L  + L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLT 449
           +          T L      +G           L  +  + L+ NK+   +       L 
Sbjct: 92  I----------TEL-PKSLFEG-----------LFSLQLLLLNANKIN-CLRVDAFQDLH 128

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
           ++  L+   N L  +   +FS L+ ++++ +   N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 30/141 (21%)

Query: 346 NIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLH 405
           N+P        +  + L  N ++   P      K+LR IDLSNN +    P       L 
Sbjct: 29  NLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLR 80

Query: 406 NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGV 464
           +                 LN +    L  NK+T E+P  +   L S++ L  + N +  +
Sbjct: 81  S-----------------LNSLV---LYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL 119

Query: 465 IPVSFSNLKQVESLDVSYNNL 485
              +F +L  +  L +  N L
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 138 PRLVYLNLSRNDFNGSIPSSIGD-MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
            +L  ++LS N  +  +       + SL  L L  N++T E+P+ L  G F+L+ L+L+ 
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 197 N---SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
           N    L    F     L  L  L L  N        + S    ++ ++++ N
Sbjct: 114 NKINCLRVDAFQD---LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 41/215 (19%)

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
           + +  N +    P        L  I ++ N +    P  F  L  L  L L  N I+  L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 300 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLTRLR 358
           P                          F    S+  L L+ N  +  +     + L  L 
Sbjct: 96  PK-----------------------SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLN 131

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP---GC----LDNTSLHNNGDND 411
            L L +N L+         L+ ++ + L+ N      P    C    L +    N  +  
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN------PFICDCHLKWLADYLHTNPIETS 185

Query: 412 GS--SAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ 444
           G+  ++P R   K + ++      C+         
Sbjct: 186 GARCTSPRRLANKRIGQIKSKKFRCSAAAHHHHHH 220

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 26/156 (16%)

Query: 331 SSIVTLDLSYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
                L L+ N F+      I ++L +LR +  +NN +             +  I L++N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 390 NLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKL 448
            L           ++ +     G           L  +  + L  N++T  +       L
Sbjct: 92  RL----------ENVQH-KMFKG-----------LESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 449 TSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
           +S+R L+   N +T V P +F  L  + +L++   N
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 53/188 (28%)

Query: 279 FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 338
           F +L  L  ++ S N I+  +                         G F   S +  + L
Sbjct: 53  FKKLPQLRKINFSNNKIT-DIEE-----------------------GAFEGASGVNEILL 88

Query: 339 SYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPG 397
           + N    N+ + + + L  L+ L+L +N +     +    L  +RL+ L +N +    PG
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 398 CLDNTS------LHNN---------------------GDNDGSSAPTRYKGKPLNKMYGV 430
             D         L  N                       N     P   K  P+  +   
Sbjct: 148 AFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQ 207

Query: 431 DLSCNKLT 438
           D +C+   
Sbjct: 208 DFTCDDAH 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 25/128 (19%)

Query: 360 LILANNNLEGEVPN-QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTR 418
           L L NN            +L QLR I+ SNN +     G  +                  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE------------------ 78

Query: 419 YKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRALNFSHNNLTGVIPVSFSNLKQVES 477
                 + +  + L+ N+L   +  ++   L S++ L    N +T V   SF  L  V  
Sbjct: 79  ----GASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133

Query: 478 LDVSYNNL 485
           L +  N +
Sbjct: 134 LSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLTRLRYLILAN 364
               ++ L+ N        G F     +  ++ S N  + +I     E  + +  ++L +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 365 NNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           N LE         L+ L+ + L +N +
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRI 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 38/163 (23%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
               +  +++         + +    L  +   NN ++                      
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--------------------- 71

Query: 125 FQGNIPLEIGVY--FPRLVYLNLSRNDFNGSIPSSIGD-MNSLKFLDLSHNQLTGEIPEH 181
                 +E G +     +  + L+ N    ++   +   + SLK L L  N++T  +   
Sbjct: 72  ------IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGND 123

Query: 182 LVIGCFNLEYLVLSEN---SLHGQLFYKKIYLRKLARLHLDAN 221
             IG  ++  L L +N   ++    F     L  L+ L+L AN
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFD---TLHSLSTLNLLAN 163

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 47/340 (13%), Positives = 104/340 (30%), Gaps = 20/340 (5%)

Query: 32  SSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNL 91
                        V    + +   F + L     +  +     +       W   +  N 
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMV-DEAPLSVEWRTPDGRNR 295

Query: 92  NTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPR-------LVYLN 144
            + V   +  +      +  H        S +  +  +  +    + R       L    
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLF 204
           LS       + S +     L+ L+  +      I   +      L+ L+  + +L     
Sbjct: 356 LSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR----ALDPLLYEKETLQYFST 410

Query: 205 YKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDI 264
            K +   + A L    +    E        + +  L+++  +L   +   L  L  +  +
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHL 468

Query: 265 MMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
            ++ N L+  +P     L  LE+L  S+N +   +   ++   +Q++ L  N L      
Sbjct: 469 DLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYW---IERLTRLRYLI 361
               +   +V L+L  NS            E L  +  ++
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 43/276 (15%), Positives = 82/276 (29%), Gaps = 44/276 (15%)

Query: 241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP 300
                  +     W G+ S    +++           +      L   +LS    +    
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR--DSATDEQLFRCELSVEKSTVLQS 366

Query: 301 SCSSHSTIQQVHL-----SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT 355
              S   +Q++          ++               +     +++     P     L 
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY---FSTLKAVDPMRAAYLD 423

Query: 356 RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA 415
            LR   L  N               +R++ L++ +L          T L +         
Sbjct: 424 DLRSKFLLEN------SVLKMEYADVRVLHLAHKDL----------TVLCHLEQ------ 461

Query: 416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQV 475
                   L  +  +DLS N+L   +PP +  L  +  L  S N L  V     +NL ++
Sbjct: 462 --------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRL 510

Query: 476 ESLDVSYNNLNG-KIPPQLVELNVLAVFSVAHNNLS 510
           + L +  N L        LV    L + ++  N+L 
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 30/152 (19%)

Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNL---EGEVPNQLCRLKQLRLIDLSNNNLF 392
           L L  N  +   P   + L  L+ L L +N L      V + L +L  L    L  N L 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD---LGTNQLT 101

Query: 393 GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIR 452
                  D                       L  +  + + CNKLT E+P  I +LT + 
Sbjct: 102 VLPSAVFDR----------------------LVHLKELFMCCNKLT-ELPRGIERLTHLT 138

Query: 453 ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
            L    N L  +   +F  L  +    + + N
Sbjct: 139 HLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLT---GEIPEHLVIGCFNLEYLVLSEN- 197
            L L  N      P     + +LK L L  NQL      + + L      L  L L  N 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----QLTVLDLGTNQ 99

Query: 198 --SLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255
              L   +F +   L  L  L +  N  T E+P+ +   + L  L +  N L        
Sbjct: 100 LTVLPSAVFDR---LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 256 GNLSSLNDI 264
             LSSL   
Sbjct: 156 DRLSSLTHA 164

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 300 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLR 358
            +C  H +   +  +++     L         ++  L +       ++    +  L  LR
Sbjct: 3   DACCPHGS-SGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 359 YLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406
            L +  + L    P+      +L  ++LS N L       +   SL  
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMAINHLQGPIPLEFCQLNY 284
           +    L     L  LY+ +     ++    L  L  L ++ +  + L+   P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 285 LEILDLSENNISGTLPSCSSHSTIQQVHLSKNML 318
           L  L+LS N +           ++Q++ LS N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN---SLHGQLFYKKIY 209
                +    +L  L + + Q    +    + G   L  L + ++    +    F+   +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247
             +L+RL+L  N     +         L+ L +S N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 431 DLSCNKLTGEIPPQ-IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
            +   +    +  + +  L  +R L    + L  V P +F    ++  L++S+N L   +
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95

Query: 490 PPQLVELNVLAVFSVAHNNL 509
             + V+   L    ++ N L
Sbjct: 96  SWKTVQGLSLQELVLSGNPL 115

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 16/128 (12%)

Query: 88  NTNLNTLVLRNNSLSGPFRMPIQPHW-----HLDTLHVSKNFFQGN-----IPLEIGVYF 137
             NL +L + +  L       I          L      +++          PL     F
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 138 PRLVYLNLSRNDFNGSIPSSIGD---MNSLKFLDLSHNQLTGEIPEHLVIGC---FNLEY 191
           P L +L +   +    +     +   +  L+ +D+S   LT E    L+       +L++
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 192 LVLSENSL 199
           + +  N L
Sbjct: 312 INMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 353 RLTRLRYLILANNNLEGEVPNQL--CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 410
               L+ L + +  L   V   +    L  L  + L                      D 
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG-------------VEDYGFDG 237

Query: 411 DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGK---LTSIRALNFSHNNLTGV--- 464
           D +     +       +  + +   +    +     +   L  +  ++ S   LT     
Sbjct: 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297

Query: 465 -IPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495
            +      +K ++ +++ YN L+ ++  +L +
Sbjct: 298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 83  WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV--YFPRL 140
           ++   +   +  +     L    R P     +L  L +     Q  +          P+L
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFP-----NLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 141 VYLNLSRNDFNGS----IPSSIGDMNSLKFLDLSHNQLTGEIPEHL 182
             +++S           +   +  +  LKF+++ +N L+ E+ + L
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 35/145 (24%)

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI----YLR 211
           +   +    + LDL   ++   I E+L       + +  S+N +      +K+     LR
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEI------RKLDGFPLLR 64

Query: 212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
           +L  L ++ N               L  L +++N           +L  L D    ++ L
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-----------SLVELGD----LDPL 109

Query: 272 QGPIPLEFCQLNYLEILDLSENNIS 296
                     L  L  L +  N ++
Sbjct: 110 AS--------LKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 287 ILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
           ++ L+   I       ++    +++ L    +  P+             +D S N     
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           +  +   L RL+ L++ NN +          L  L  + L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLD 337
           ++        LDL    I       ++      +  S N +    K   F     + TL 
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLL 70

Query: 338 LSYNSFSGNIPYWIERLTRLRYLILANNNLE--GEVPNQLCRLKQLRLIDLSNN 389
           ++ N          + L  L  LIL NN+L   G++ + L  LK L  + +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQ--GNIPLEIGVYFPRLVY 142
             N      L LR   +     +        D +  S N  +     P        RL  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDGFP-----LLRRLKT 68

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLT--GEIPEHLVIGCFNLEYLVLSENSLH 200
           L ++ N            +  L  L L++N L   G++ + L     +L YL +  N + 
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVT 126

Query: 201 GQLFYKKIYLRKLARL-HLD 219
            +  Y+   + K+ ++  LD
Sbjct: 127 NKKHYRLYVIYKVPQVRVLD 146

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 24/151 (15%)

Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395
           LDL     +         LT+L +L L  N L+         L +L  + L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL---- 95

Query: 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIRAL 454
                  SL                   L ++  + L  N+L   +P  +  +LT ++ L
Sbjct: 96  ------ASLP-------LGVFDH-----LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136

Query: 455 NFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
             + N L  +   +F  L  +++L +S N L
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 238 EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG 297
           E L +    L     A    L+ L  + +  N LQ      F  L  L  L L+ N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 298 TLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERL 354
           +LP       + + +++L  N L   L  G F   + +  L L+ N    +IP    ++L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
           T L+ L L+ N L+        RL +L+ I L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 336
                +  L  LD  ++N        +    ++ + L    L   +          +  L
Sbjct: 21  RTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKL 76

Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLE--GEVPNQLCRLKQLRLIDLSNN 389
           +LS N   G +    E+L  L +L L+ N L+    +   L +L+ L+ +DL N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 87  NNTNLNTLVLRNNSLSGPFRMPIQPH-WHLDTLHVSKNFFQ--GNIPLEIGVYFPRLVYL 143
               +  LVL N   +      +     +L+ L +         N+P       P+L  L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKL 76

Query: 144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCF-NLEYLVLSENSLHGQ 202
            LS N   G +      + +L  L+LS N+L  +I     +     L+ L L    +   
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 203 LFYKKIYLRKLARL-HLD 219
             Y++   + L +L +LD
Sbjct: 136 NDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 206 KKIYLRKLARLHLDANYCT-GEIPKSLSNCSPLEGLYMSDNNLY--GNIPAWLGNLSSLN 262
           +      +  L LD      G+I    +    LE L + +  L    N+P     L  L 
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLK 74

Query: 263 DIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
            + ++ N + G + +   +L  L  L+LS N + 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 48/151 (31%), Positives = 63/151 (41%), Gaps = 38/151 (25%)

Query: 89  TNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV--- 141
           TNL  L+L  N L     G F         L  L + +N  Q    L  GV F +L    
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKLTN----LKELVLVENQLQS---LPDGV-FDKLTNLT 136

Query: 142 YLNLSRNDFNGSIPSSIGD-MNSLKFLDLSHNQLTGEIPEHLVIGCF----NLEYLVLSE 196
           YLNL+ N    S+P  + D + +L  LDLS+NQL   +PE    G F     L+ L L +
Sbjct: 137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPE----GVFDKLTQLKDLRLYQ 190

Query: 197 NSLHGQLFYKKI------YLRKLARLHLDAN 221
           N L      K +       L  L  + L  N
Sbjct: 191 NQL------KSVPDGVFDRLTSLQYIWLHDN 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 69/498 (13%), Positives = 156/498 (31%), Gaps = 119/498 (23%)

Query: 3   IPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKF--L 60
           +    + F     +  F  +C ++    +   S+  K +++ + +S   +  T   F  L
Sbjct: 22  LSVFEDAF-----VDNF--DCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 61  YNQHDLEYVDFSDSNLKGEFPNWLLE------NNTNLNTLVL---RNNSLSGPFRMP--- 108
            ++ +     F +  L+  +  +L+          ++ T +    R+   +         
Sbjct: 72  LSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 109 ---IQPHW----HLDTLHVSKN-FFQG---------------NIPLEIGVYFPRLVY-LN 144
              +QP+      L  L  +KN    G               +  ++        ++ LN
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--MDFKIFWLN 188

Query: 145 LSRNDFNGSIPSSIGDMNSLKF-LDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQL 203
           L   +   ++   +  +  L + +D +         +H      N++  + S  +   +L
Sbjct: 189 LKNCNSPETV---LEMLQKLLYQIDPNWTSR----SDHS----SNIKLRIHSIQAELRRL 237

Query: 204 FYKKIYLRKLARLHLDANYCTGEIPKSLS-NCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262
              K Y   L  L L  N    +   + + +C  L  L      +   + A      SL+
Sbjct: 238 LKSKPYENCL--LVLL-NVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLD 292

Query: 263 DIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSH----STI-----QQV 311
              M +   +         L YL+            LP    +++    S I       +
Sbjct: 293 HHSMTLTPDEV---KSLL-LKYLDC-------RPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 312 HLSKNMLYGPLKYGTFFNRSSIVTLDLS-----YNSFS-----GNIPYWIERLTRLRYLI 361
               N  +      T    SS+  L+ +     ++  S      +IP     L+     +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLS-----L 394

Query: 362 LANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPG--------CLDNTSLHN---NGDN 410
           +  + ++ +V   + +L +  L++         IP           +  +LH    +  N
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 411 DGSSAPTRYKGKPLNKMY 428
              +  +     P    Y
Sbjct: 455 IPKTFDSDDLIPPYLDQY 472

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 86  ENNTNLNTLVLRNNSLSGPFRMPIQPH-WHLDTLHVSKNFFQ--GNIPLEIGVYFPRLVY 142
              +++  LVL N+  +      +      L+ L           N+P        +L  
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKK 68

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSLHG 201
           L LS N  +G +        +L  L+LS N++      E L     NL+ L L    +  
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTN 127

Query: 202 QLFYKKIYLRKLARL-HLD 219
              Y++   + L +L +LD
Sbjct: 128 LNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 212 KLARLHLDANYCT-GEIPKSLSNCSPLEGLYMSDNNLY--GNIPAWLGNLSSLNDIMMAI 268
            +  L LD +    G++         LE L   +  L    N+P     L+ L  + ++ 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSD 73

Query: 269 NHLQGPIPLEFCQLNYLEILDLSENNIS 296
           N + G + +   +   L  L+LS N I 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS--GNIPYWIERLTRLRYLILA 363
           S ++++ L  +        G       +  L       +   N+P    +L +L+ L L+
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELS 72

Query: 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
           +N + G +     +   L  ++LS N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
              V L+         + +++  + + K L LS N +  +I   L  G  NL  L L  N
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRN 80

Query: 198 SLHGQLFYKKI-----YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL--YGN 250
            +      KKI         L  L +  N     +   +     L  LYMS+N +  +G 
Sbjct: 81  LI------KKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGE 132

Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY 284
           I   L  L  L D+++A N L            Y
Sbjct: 133 I-DKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE----HLVIGCFNLEYLVLSEN- 197
           L L  N F   +P  + +   L  +DLS+N+++  +      ++      L  L+LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMT----QLLTLILSYNR 89

Query: 198 --SLHGQLFYKKIYLRKLARLHLDAN 221
              +  + F     L+ L  L L  N
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGN 112

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 53/282 (18%), Positives = 88/282 (31%), Gaps = 30/282 (10%)

Query: 136 YFPRLVYLNLSRNDFNGSIPSSIGDMNS----LKFLDLSHNQLTGEIPEHLVIGCFNLEY 191
             P     NL  + + G +   I  M+S    L+ + L    +T +  E +     N + 
Sbjct: 75  GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134

Query: 192 LVLSENSL---HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLS----NCSPLEGLYMS- 243
           LVLS        G L       R L  L L  +         LS      + L  L +S 
Sbjct: 135 LVLSSCEGFSTDG-LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193

Query: 244 ------DNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG 297
                  + L   +     NL SL  +  A+   +    L+      LE L         
Sbjct: 194 LASEVSFSAL-ERLVTRCPNLKSL-KLNRAVPLEKLATLLQRAP--QLEELGTGGYTAEV 249

Query: 298 TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF------NRSSIVTLDLSYNSFSGN-IPYW 350
                S  S           L G       +        S + TL+LSY +     +   
Sbjct: 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309

Query: 351 IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392
           + +  +L+ L + +   +  +       K LR + +  +  F
Sbjct: 310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 53/386 (13%), Positives = 117/386 (30%), Gaps = 60/386 (15%)

Query: 41  QLESVKLSGSGIHATFPKFLY----NQHDLEYVDFSDSNLKG---EFPNWLLENNTNLNT 93
           +++++ +  S       K+L+    +   LE ++F  +       +    +  N  +L +
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 94  LVLRNNSLSGPFR-MPIQPHW-HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN 151
           + + +  +           +        ++++       + + V+  +L  L LS    N
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRKLCRLGLSYMGPN 283

Query: 152 GSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLR 211
             +P        ++ LDL +  L  E    L+  C NLE L          L     Y +
Sbjct: 284 E-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 212 KLARLHLDANYCTGEIPKSLS--------------NCSPLEGLYMSDNNL----YGNIPA 253
           +L RL +       E                     C  LE + +  +++      +I  
Sbjct: 343 QLKRLRI--ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400

Query: 254 WLGNLSSLNDIMMAINHLQGPIPLE------FCQLNYLEILDLSENNISGTLPSCSSHST 307
           +L NL     +++        +PL+            L            T    S    
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS---- 456

Query: 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN-IPYWIERLTRLRYLILANNN 366
               ++ +                ++  + L Y   S   +  +      L+ L +    
Sbjct: 457 ----YIGQYS-------------PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499

Query: 367 L-EGEVPNQLCRLKQLRLIDLSNNNL 391
             E  +   + +L  LR + +     
Sbjct: 500 FSERAIAAAVTKLPSLRYLWVQGYRA 525

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 31/153 (20%)

Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANN---NLEGEVPNQLCRLKQLRLIDLSNNNLF 392
           LDL  NS         + LT L  L L  N   +L   V N+L  L  L L   S N L 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL---STNQLQ 89

Query: 393 GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSI 451
               G  D                       L ++  + L+ N+L   +P  +  KLT +
Sbjct: 90  SLPNGVFDK----------------------LTQLKELALNTNQLQ-SLPDGVFDKLTQL 126

Query: 452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
           + L    N L  V    F  L  ++ + + ++N
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWL-HDN 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	623
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.46

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-64  Score=561.41  Aligned_cols=508  Identities=32%  Similarity=0.481  Sum_probs=450.6

Q ss_pred             CCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEE
Q 038273           39 KFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL  118 (623)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  118 (623)
                      +.+|++|++++|++.+.+|. ++++++|++|++++|.+++.+|..+ ..+++|++|++++|++++..|..  .+++|++|
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            34899999999999887777 8999999999999999987777664 89999999999999998776654  88999999


Q ss_pred             EccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc
Q 038273          119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS  198 (623)
Q Consensus       119 ~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  198 (623)
                      ++++|.+.+.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|...+..+++|++|++++|.
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            99999999899999888778999999999999999999999999999999999999989999877899999999999999


Q ss_pred             CccccccccccCC-CCCEEecccccCccccCccCcC--CCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccc
Q 038273          199 LHGQLFYKKIYLR-KLARLHLDANYCTGEIPKSLSN--CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI  275 (623)
Q Consensus       199 l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  275 (623)
                      +.+..|..+..++ +|+.|++++|.+++..+..+..  +++|++|++++|.+++..|..+..+++|++|++++|.+.+..
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence            9988999998887 9999999999999888887776  889999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcc
Q 038273          276 PLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL  354 (623)
Q Consensus       276 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  354 (623)
                      |..+..+++|+.|++++|.+.+.+|... .+++|++|++++|.+.+.++.. +..+++|++|++++|++++..|.++..+
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcC
Confidence            9999999999999999999998777655 6899999999999998888876 8999999999999999999999999999


Q ss_pred             ccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCC-----------------------
Q 038273          355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDND-----------------------  411 (623)
Q Consensus       355 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~-----------------------  411 (623)
                      ++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+....-.......                       
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999876543211000000                       


Q ss_pred             -------------------CCCCCcc------ccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC
Q 038273          412 -------------------GSSAPTR------YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP  466 (623)
Q Consensus       412 -------------------~~~~~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  466 (623)
                                         .......      .....+++|+.||+++|++++.+|..++.+++|+.|+|++|.+++.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                               0000000      012346789999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCC
Q 038273          467 VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAA  546 (623)
Q Consensus       467 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~  546 (623)
                      ..++++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|+.. ++.++...++.|||.+||.+++.|....
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch-hhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence            999999999999999999999999999999999999999999999999864 7888899999999999999998899887


Q ss_pred             CCCCCC
Q 038273          547 VPEASN  552 (623)
Q Consensus       547 ~~~~~~  552 (623)
                      ..+|+.
T Consensus       753 ~~~~~~  758 (768)
T 3rgz_A          753 ADGYAH  758 (768)
T ss_dssp             ------
T ss_pred             cCCCCC
Confidence            777773

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.5e-60  Score=524.92  Aligned_cols=517  Identities=29%  Similarity=0.377  Sum_probs=376.7

Q ss_pred             cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcc---cCCCCCCcEEEccCCCCCCcCChHHh
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKF---LYNQHDLEYVDFSDSNLKGEFPNWLL   85 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (623)
                      .++++++|++||+++|.+.+..+... +..+.+|++|++++|++++..|..   +.++++|++|++++|.+++..+.   
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---  196 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSG-GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---  196 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCS-CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHH-hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---
Confidence            68999999999999998875544331 123348999999999988777766   77888888888888888765553   


Q ss_pred             hCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC
Q 038273           86 ENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK  165 (623)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  165 (623)
                      ..+++|++|++++|.+++..+. +.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..  .+++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~  272 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQ  272 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCC
Confidence            5788888888888888776665 788888888888888888766766655 678888888888877666554  677788


Q ss_pred             EEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCcc-CcCCCCCcEEECcC
Q 038273          166 FLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKS-LSNCSPLEGLYMSD  244 (623)
Q Consensus       166 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~  244 (623)
                      +|++++|.+++.+|..++..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            88888887777777766554577888888887777777777777777888888777777666644 67777777777777


Q ss_pred             CcCccccchhccCCC-CCCEEECccccccccccccccC--CCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccc
Q 038273          245 NNLYGNIPAWLGNLS-SLNDIMMAINHLQGPIPLEFCQ--LNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYG  320 (623)
Q Consensus       245 n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~  320 (623)
                      |.+++..|..+..++ +|++|++++|.+.+..+..+..  +++|+.|++++|.+.+.+|... .+++|+.|++++|.+.+
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            777767777666665 6777777777666655555544  5566666666666665555443 45666666666666655


Q ss_pred             cCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccc
Q 038273          321 PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD  400 (623)
Q Consensus       321 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  400 (623)
                      .++.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.
T Consensus       433 ~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  511 (768)
T 3rgz_A          433 TIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG  511 (768)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence            55544 55666666666666666666666666666666666666666666666666666666666666666666665554


Q ss_pred             ccc-ccC--CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcc---------------------------------
Q 038273          401 NTS-LHN--NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ---------------------------------  444 (623)
Q Consensus       401 ~~~-l~~--~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------------------------  444 (623)
                      ... +..  ...+...... ......+++|+.|++++|.+++.+|..                                 
T Consensus       512 ~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (768)
T 3rgz_A          512 RLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA  590 (768)
T ss_dssp             GCTTCCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred             cCCCCCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence            332 111  1111111000 011123568888888888887666643                                 


Q ss_pred             -------------------------------------ccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccc
Q 038273          445 -------------------------------------IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG  487 (623)
Q Consensus       445 -------------------------------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  487 (623)
                                                           +..+++|+.|++++|.+++.+|..++++++|+.|+|++|++++
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence                                                 3446789999999999999999999999999999999999999


Q ss_pred             cCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273          488 KIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       488 ~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      .+|+.+..+++|++|++++|++++.+|..+..+++|+.+++++|+...
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            999999999999999999999999999999999999999999998864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-55  Score=486.48  Aligned_cols=534  Identities=21%  Similarity=0.183  Sum_probs=330.8

Q ss_pred             cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN   88 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l   88 (623)
                      .|.++++|++|++++|.+....+...  ..+.+|++|++++|++++..+..++++++|++|++++|.++ .++...+.++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l  120 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELC--QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQ  120 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHH--HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTC
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHH--hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHcccc
Confidence            35555555555555555443322211  11225555555555555443444555555666666555555 3333333555


Q ss_pred             CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhh-cCCCccEEecccCcccccCCcccCCC------
Q 038273           89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIGDM------  161 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l------  161 (623)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. .+++|++|++++|.+++..|..+..+      
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  200 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL  200 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence            56666666665555555555555566666666665555322222211 13456666666665555544444333      


Q ss_pred             ---------------------CCCCEEEccCCcCCcccchHHhhCCC--CCCEEEcccCcCccccccccccCCCCCEEec
Q 038273          162 ---------------------NSLKFLDLSHNQLTGEIPEHLVIGCF--NLEYLVLSENSLHGQLFYKKIYLRKLARLHL  218 (623)
Q Consensus       162 ---------------------~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  218 (623)
                                           ++|+.|++++|.+. .++...+.+++  +|++|++++|.+.+..+..+..+++|+.|++
T Consensus       201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (680)
T 1ziw_A          201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL  279 (680)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC-EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hccccccChhhHHHHHHHhhhccccEEEccCCccc-ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence                                 33444444444444 22222223332  2666666666655555555555666666666


Q ss_pred             ccccCccccCccCcCCCCCcEEECcCCcCcc-----ccc----hhccCCCCCCEEECccccccccccccccCCCCCcEEe
Q 038273          219 DANYCTGEIPKSLSNCSPLEGLYMSDNNLYG-----NIP----AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD  289 (623)
Q Consensus       219 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  289 (623)
                      ++|.+.+..+..+..+++|+.|++++|...+     .+|    ..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  359 (680)
T 1ziw_A          280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS  359 (680)
T ss_dssp             CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred             CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence            6666655555555555666666655543221     111    2455666777777777777766666677777777777


Q ss_pred             CcCcccee-eCC-CCC---CCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcEEEcc
Q 038273          290 LSENNISG-TLP-SCS---SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILA  363 (623)
Q Consensus       290 l~~n~~~~-~~~-~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~  363 (623)
                      +++|.+.. .++ ..+   ..++|+.|++++|.+.+..+. +|..+++|+.|++++|.+.+.++ ..+..+++|++|+++
T Consensus       360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  438 (680)
T 1ziw_A          360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS  438 (680)
T ss_dssp             CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred             CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence            77765321 111 111   124677777777777554443 37777888888888888765444 567777888888888


Q ss_pred             cccccccCchhhcCCCCCCEEEccCCcCc--CCCCCcccccc-cc--CCCCCCCCCCCccccCCCCCCccEEEccCCccc
Q 038273          364 NNNLEGEVPNQLCRLKQLRLIDLSNNNLF--GQIPGCLDNTS-LH--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT  438 (623)
Q Consensus       364 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~-l~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  438 (623)
                      +|++.+..+..+..+++|+.|++++|.+.  +..|..+.... +.  ....+..... .......+++|++|++++|.++
T Consensus       439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC-ChhhhccccccCEEeCCCCCcc
Confidence            88877666777777777777777777765  34454443322 11  1111111111 1112245679999999999998


Q ss_pred             ccCC--------ccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccc
Q 038273          439 GEIP--------PQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS  510 (623)
Q Consensus       439 ~~~~--------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  510 (623)
                      +..+        ..+..+++|+.|++++|.++.+.+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|+++
T Consensus       518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            6422        23788999999999999999776678999999999999999999877788899999999999999999


Q ss_pred             ccCCCCcc-ccCCCCCccccCCCCCCCCCCCCCCC-CCCCCCCCc
Q 038273          511 GKIPEWTA-QFTTFKEDSYEGNPLLCGKPLPDCDV-AAVPEASNE  553 (623)
Q Consensus       511 ~~~~~~~~-~~~~l~~l~l~~Np~~C~~~l~~C~~-~~~~~~~~~  553 (623)
                      +..+..+. .+++|+.+++++|||.|     +|+. .|+..|...
T Consensus       598 ~~~~~~~~~~~~~L~~l~l~~N~~~c-----~c~~~~~~~~~~~~  637 (680)
T 1ziw_A          598 SVEKKVFGPAFRNLTELDMRFNPFDC-----TCESIAWFVNWINE  637 (680)
T ss_dssp             BCCHHHHHHHHTTCSEEECTTCCCCB-----CCCCCSSEECCSSC
T ss_pred             ccChhHhcccccccCEEEccCCCccc-----CCccHHHHHHHHHh
Confidence            98887776 68999999999999999     7775 777777643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.5e-55  Score=478.30  Aligned_cols=501  Identities=17%  Similarity=0.178  Sum_probs=408.8

Q ss_pred             CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273           15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL   94 (623)
Q Consensus        15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (623)
                      ++++||+++|.++...+..  +..+.+|++|++++|++.+..|.+|.++++|++|++++|.+++..|.. +.++++|++|
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L  110 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTT--FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHL  110 (606)
T ss_dssp             TCCEEECTTCCCSEECTTT--STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEE
T ss_pred             cCcEEEccCCccCcCChhH--hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEe
Confidence            6888888888877654433  233347888888888888777888888888888888888887444444 5788888888


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC--EEEccCC
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK--FLDLSHN  172 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n  172 (623)
                      ++++|++++..+..+.++++|++|++++|.+.+..+..... +++|++|++++|.+++..+..++.+++|+  .|++++|
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            88888888776777888888888888888887422222333 67888888888888877777788888888  7888888


Q ss_pred             cCCcccchHHhhCCCCCCEEEcccCcCc--------------------------cccccccccCC--CCCEEecccccCc
Q 038273          173 QLTGEIPEHLVIGCFNLEYLVLSENSLH--------------------------GQLFYKKIYLR--KLARLHLDANYCT  224 (623)
Q Consensus       173 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------------------------~~~~~~~~~~~--~L~~L~l~~n~~~  224 (623)
                      .++ .++...+ ...+|++|++++|...                          ...+..+..+.  +|+.|++++|.++
T Consensus       190 ~l~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          190 DIA-GIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             CCC-EECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             ccC-ccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            887 5555554 3467788887766411                          01111222222  7889999999999


Q ss_pred             cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCC--C
Q 038273          225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--C  302 (623)
Q Consensus       225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~  302 (623)
                      +..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++.  .
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            888888999999999999999998 6778899999999999999999988888899999999999999998866655  3


Q ss_pred             CCCCcccEEEccCccccccC--CCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCch-hhcCCC
Q 038273          303 SSHSTIQQVHLSKNMLYGPL--KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN-QLCRLK  379 (623)
Q Consensus       303 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~  379 (623)
                      ..+++|++|++++|.+.+..  +. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+. .+..++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            47899999999999986654  33 388899999999999999988888999999999999999999876554 488999


Q ss_pred             CCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc---CCccccccccCCeeeC
Q 038273          380 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE---IPPQIGKLTSIRALNF  456 (623)
Q Consensus       380 ~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L  456 (623)
                      +|+.|++++|.+.+..|..+..                      +++|++|++++|.+++.   .+..+..+++|+.|++
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDG----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTT----------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             cCCEEECCCCccCCcCHHHHhC----------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence            9999999999998877776654                      45999999999999862   3467899999999999


Q ss_pred             CCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273          457 SHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG  536 (623)
Q Consensus       457 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~  536 (623)
                      ++|.+++..|..|..+++|++|+|++|++++..|+.+..++.| +|++++|++++..|..+..+++|+.+++++||+.| 
T Consensus       484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-  561 (606)
T 3t6q_A          484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC-  561 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC-
T ss_pred             CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc-
Confidence            9999999999999999999999999999999999999999999 99999999999999888899999999999999999 


Q ss_pred             CCCCCCCCCCCCCCC
Q 038273          537 KPLPDCDVAAVPEAS  551 (623)
Q Consensus       537 ~~l~~C~~~~~~~~~  551 (623)
                          +|...|+..|.
T Consensus       562 ----~c~~~~~~~w~  572 (606)
T 3t6q_A          562 ----TCSNIYFLEWY  572 (606)
T ss_dssp             ----SGGGHHHHHHH
T ss_pred             ----cCCcHHHHHHH
Confidence                66655554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5e-55  Score=491.12  Aligned_cols=488  Identities=19%  Similarity=0.149  Sum_probs=367.8

Q ss_pred             CCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCC-CcccCCCCCCcEEEccCCCCCCcCChHHhhCCCC
Q 038273           12 NNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATF-PKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTN   90 (623)
Q Consensus        12 ~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~   90 (623)
                      ..++|++|||++|.+....+..  +....+|++|++++|...+.+ |.++.++++|++|++++|.+++..|.. |.++++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~--~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASS--FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSS--CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhH--CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcc
Confidence            4468888888888876554433  233338888888888655444 777888888888888888887444544 478888


Q ss_pred             CCEEEccCCcCcCcCCCC--CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCC--CCCCE
Q 038273           91 LNTLVLRNNSLSGPFRMP--IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM--NSLKF  166 (623)
Q Consensus        91 L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~  166 (623)
                      |++|++++|.+++..+..  +.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            888888888887755544  78888888888888888754444444447788888888888887777777766  78888


Q ss_pred             EEccCCcCCcccchHHhhCCC------CCCEEEcccCcCccccccccc--------------------------------
Q 038273          167 LDLSHNQLTGEIPEHLVIGCF------NLEYLVLSENSLHGQLFYKKI--------------------------------  208 (623)
Q Consensus       167 L~l~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~--------------------------------  208 (623)
                      |++++|.+.+..+..+ ..+.      .|++|++++|.+.+..+..+.                                
T Consensus       179 L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~  257 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ  257 (844)
T ss_dssp             CEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred             EECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence            8888888775555433 2333      388888888866543333222                                


Q ss_pred             ----c--CCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCC
Q 038273          209 ----Y--LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQL  282 (623)
Q Consensus       209 ----~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l  282 (623)
                          .  .++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+
T Consensus       258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence                1  2567888888888877777778888888888888888877777778888888888888888877777778888


Q ss_pred             CCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEE
Q 038273          283 NYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLI  361 (623)
Q Consensus       283 ~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  361 (623)
                      ++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+      +..+++|+.|++++|+++. +|..   ..+++.|+
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~  407 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIH  407 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCccc-cccc---ccccceee
Confidence            888888888887765544433 57788888888887743      2336778888888888773 3332   45678888


Q ss_pred             cccccccccC-chhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc--
Q 038273          362 LANNNLEGEV-PNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT--  438 (623)
Q Consensus       362 L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--  438 (623)
                      +++|++.+.. +..+..+++|+.|++++|++++..+....                     ..+++|+.|++++|.++  
T Consensus       408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------~~~~~L~~L~Ls~N~l~~~  466 (844)
T 3j0a_A          408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------------SENPSLEQLFLGENMLQLA  466 (844)
T ss_dssp             CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------CSCTTCCBCEEESCCCSSS
T ss_pred             cccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------ccCCccccccCCCCccccc
Confidence            8888887543 23456888999999999988754432111                     12569999999999997  


Q ss_pred             ---ccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCC
Q 038273          439 ---GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE  515 (623)
Q Consensus       439 ---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  515 (623)
                         +..+..+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+.  ++|+.|++++|++++..|.
T Consensus       467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~  544 (844)
T 3j0a_A          467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD  544 (844)
T ss_dssp             CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred             cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence               34556788999999999999999999999999999999999999999987777665  8999999999999999997


Q ss_pred             CccccCCCCCccccCCCCCCCCCC
Q 038273          516 WTAQFTTFKEDSYEGNPLLCGKPL  539 (623)
Q Consensus       516 ~~~~~~~l~~l~l~~Np~~C~~~l  539 (623)
                      .+   .+++.+++++||+.|+|++
T Consensus       545 ~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          545 VF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CC---SSCCEEEEEEECCCCSSSC
T ss_pred             Hh---CCcCEEEecCCCccccccc
Confidence            65   5888999999999997764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-54  Score=471.67  Aligned_cols=496  Identities=19%  Similarity=0.198  Sum_probs=379.8

Q ss_pred             CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCE
Q 038273           14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNT   93 (623)
Q Consensus        14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (623)
                      +++++|++++|.+....+..  +....+|++|++++|++++..|.++.++++|++|++++|.+++..|.. +.++++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYS--FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCE
T ss_pred             CCcCEEECCCCCcCEeChhh--ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCE
Confidence            67888888888876554433  223347888888888887777777888888888888888887443544 478888888


Q ss_pred             EEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC----EEE
Q 038273           94 LVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK----FLD  168 (623)
Q Consensus        94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~  168 (623)
                      |++++|.+++..+..++++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..++.+++|+    +|+
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD  187 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence            8888888877777778888888888888888774 46766665 67888888888888877777776665554    788


Q ss_pred             ccCCcCCcccchHHhhCCCCCCEEEcccCcCc-cccccccccCCCCCEEec-----------------------------
Q 038273          169 LSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH-GQLFYKKIYLRKLARLHL-----------------------------  218 (623)
Q Consensus       169 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l-----------------------------  218 (623)
                      +++|.++ .++...+... +|++|++++|.+. ...+..+.+++.|+.+++                             
T Consensus       188 l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~  265 (606)
T 3vq2_A          188 MSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE  265 (606)
T ss_dssp             CTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred             ccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence            8888887 6777666544 7888888888765 234444555555555444                             


Q ss_pred             ----ccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCcc
Q 038273          219 ----DANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENN  294 (623)
Q Consensus       219 ----~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  294 (623)
                          ..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|.
T Consensus       266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~  339 (606)
T 3vq2_A          266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNK  339 (606)
T ss_dssp             EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCS
T ss_pred             eeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCc
Confidence                34445555554 6777888888888888763 44 677788888888888888 4555 44 78888888888886


Q ss_pred             ceeeCCCCCCCCcccEEEccCccccccC--CCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCc
Q 038273          295 ISGTLPSCSSHSTIQQVHLSKNMLYGPL--KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP  372 (623)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  372 (623)
                      ..+.. ....+++|++|++++|.+.+..  +. .+..+++|++|++++|.+.+ .|..+..+++|+.|++++|++.+..+
T Consensus       340 ~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~  416 (606)
T 3vq2_A          340 GSISF-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE  416 (606)
T ss_dssp             SCEEC-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred             Cccch-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence            55444 3446788888888888775542  33 26677888888888888774 45667778888888888888876666


Q ss_pred             -hhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc-cCCcccccccc
Q 038273          373 -NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTS  450 (623)
Q Consensus       373 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~  450 (623)
                       ..+..+++|+.|++++|.+.+..|..+..                      +++|++|++++|.+++ ..|..+..+++
T Consensus       417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------------------LTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             TTTTTTCTTCCEEECTTSCCEECCTTTTTT----------------------CTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             hhhhhccccCCEEECcCCCCCccchhhhcC----------------------CCCCCEEECCCCcCCCcchHHhhccCCC
Confidence             57778888888888888887777666554                      4599999999999997 47889999999


Q ss_pred             CCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccC-CCCCcccc
Q 038273          451 IRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFT-TFKEDSYE  529 (623)
Q Consensus       451 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~l~  529 (623)
                      |+.|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|++|++++|+++. +|..+..++ +|+.++++
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLT  553 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECC
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999999994 555577886 59999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q 038273          530 GNPLLCGKPLPDCDVAAVPEASN  552 (623)
Q Consensus       530 ~Np~~C~~~l~~C~~~~~~~~~~  552 (623)
                      +||+.|     +|+..|+..|..
T Consensus       554 ~N~~~c-----~c~~~~~~~~l~  571 (606)
T 3vq2_A          554 NNSVAC-----ICEHQKFLQWVK  571 (606)
T ss_dssp             SCCCCC-----SSTTHHHHTTTT
T ss_pred             CCCccc-----CCccHHHHHHHH
Confidence            999999     677666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.3e-52  Score=456.16  Aligned_cols=517  Identities=20%  Similarity=0.173  Sum_probs=408.3

Q ss_pred             CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCE
Q 038273           14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNT   93 (623)
Q Consensus        14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (623)
                      +++++|++++|.+....+..  +..+.+|++|++++|.+.+..|.+++++++|++|++++|.++ .+|...|.++++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGG--GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcCHHH--HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCE
Confidence            68999999999887654432  223348999999999998888888999999999999999988 677766688999999


Q ss_pred             EEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccC--CCCCCCEEEccC
Q 038273           94 LVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG--DMNSLKFLDLSH  171 (623)
Q Consensus        94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~  171 (623)
                      |++++|++++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..+..+.  .+++|++|++++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            999999998887888999999999999999988555554444 78999999999998876666554  568899999999


Q ss_pred             CcCCcccchHHhhCC---------------------------CCCCEEEcccCcCccccccccccCCC--CCEEeccccc
Q 038273          172 NQLTGEIPEHLVIGC---------------------------FNLEYLVLSENSLHGQLFYKKIYLRK--LARLHLDANY  222 (623)
Q Consensus       172 n~l~~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~  222 (623)
                      |.++ .++...+..+                           ++|++|++++|.+.+..+..+..++.  |+.|++++|.
T Consensus       181 n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~  259 (680)
T 1ziw_A          181 NQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN  259 (680)
T ss_dssp             CCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred             Cccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence            9888 4444333333                           56778888888888777777777754  9999999999


Q ss_pred             CccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccc---------cccccccCCCCCcEEeCcCc
Q 038273          223 CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG---------PIPLEFCQLNYLEILDLSEN  293 (623)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---------~~~~~~~~l~~L~~L~l~~n  293 (623)
                      +++..+..|+.+++|++|++++|.+.+..+..+..+++|+.|++++|...+         .....+..+++|+.|++++|
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n  339 (680)
T 1ziw_A          260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN  339 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred             cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence            988888888999999999999999988888889999999999998765432         12236778899999999999


Q ss_pred             cceeeCCCCC-CCCcccEEEccCccccc-cCCCCCccCC--CceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccc
Q 038273          294 NISGTLPSCS-SHSTIQQVHLSKNMLYG-PLKYGTFFNR--SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG  369 (623)
Q Consensus       294 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~-~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  369 (623)
                      .+.+..+..+ .+++|++|++++|.+.. .++...|..+  ++|+.|++++|++++..|..+..+++|+.|++++|.+.+
T Consensus       340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            9987666544 68899999999987532 2333334433  589999999999998889999999999999999999987


Q ss_pred             cCc-hhhcCCCCCCEEEccCCcCcCCCCCcccccc-ccC--CCCCCCCC-CCccccCCCCCCccEEEccCCcccccCCcc
Q 038273          370 EVP-NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS-LHN--NGDNDGSS-APTRYKGKPLNKMYGVDLSCNKLTGEIPPQ  444 (623)
Q Consensus       370 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~--~~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  444 (623)
                      .++ ..+..+++|++|++++|++.+..+..+...+ +..  ...+.... .........+++|+.|++++|.+++..+..
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~  499 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM  499 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence            655 7899999999999999999877776665433 111  11111110 111122345788999999999999877888


Q ss_pred             ccccccCCeeeCCCCcccccCC--------ccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCC
Q 038273          445 IGKLTSIRALNFSHNNLTGVIP--------VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEW  516 (623)
Q Consensus       445 l~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  516 (623)
                      +..+++|++|++++|.+++..+        ..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++++..+..
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  579 (680)
T 1ziw_A          500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV  579 (680)
T ss_dssp             TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence            9999999999999999886532        24788899999999999999665667899999999999999999887877


Q ss_pred             ccccCCCCCccccCCCCCC
Q 038273          517 TAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       517 ~~~~~~l~~l~l~~Np~~C  535 (623)
                      +..+++|+.+++++|...-
T Consensus       580 ~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             TTTCTTCCEEECTTSCCCB
T ss_pred             hCCCCCCCEEECCCCcCCc
Confidence            8888999999999987643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.3e-52  Score=451.45  Aligned_cols=478  Identities=20%  Similarity=0.197  Sum_probs=408.9

Q ss_pred             CccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhh
Q 038273            7 LEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLE   86 (623)
Q Consensus         7 ~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~   86 (623)
                      ...|.++++|++|++++|.+....+..  +..+.+|++|++++|++.+..|..++++++|++|++++|.++ .++...+.
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~  126 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLH  126 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTT--TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCT
T ss_pred             hhHhccCccceEEECCCCccceeChhh--ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhc
Confidence            357899999999999999987655443  234449999999999999888999999999999999999998 45444468


Q ss_pred             CCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc--EEecccCcccccCCcccCCCCCC
Q 038273           87 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV--YLNLSRNDFNGSIPSSIGDMNSL  164 (623)
Q Consensus        87 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L  164 (623)
                      ++++|++|++++|++++.....+..+++|++|++++|.+.+..|..+. .+++|+  .|++++|.+++..|..+.. .+|
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L  204 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDS-AVF  204 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTT-CEE
T ss_pred             cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhh-ccc
Confidence            999999999999999886655666699999999999999944444444 478999  8999999999877776654 689


Q ss_pred             CEEEccCCcCC-------------------------cccchHHhhCCC--CCCEEEcccCcCccccccccccCCCCCEEe
Q 038273          165 KFLDLSHNQLT-------------------------GEIPEHLVIGCF--NLEYLVLSENSLHGQLFYKKIYLRKLARLH  217 (623)
Q Consensus       165 ~~L~l~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  217 (623)
                      +.|++++|...                         ..++...+.++.  +|++|++++|.+.+..+..+..+++|+.|+
T Consensus       205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  284 (606)
T 3t6q_A          205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD  284 (606)
T ss_dssp             EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred             cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence            99999887411                         022333333333  789999999999988888899999999999


Q ss_pred             cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc-ccccCCCCCcEEeCcCccce
Q 038273          218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP-LEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  296 (623)
                      +++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus       285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE  363 (606)
T ss_dssp             CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence            9999998 678889999999999999999998888999999999999999999885544 45889999999999999998


Q ss_pred             eeC--C-CCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCch-hhhccccCcEEEcccccccccCc
Q 038273          297 GTL--P-SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLTRLRYLILANNNLEGEVP  372 (623)
Q Consensus       297 ~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~  372 (623)
                      +..  + ....+++|++|++++|.+.+..+.. |..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  442 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE  442 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence            664  3 3457899999999999997665554 88999999999999999876554 48899999999999999998889


Q ss_pred             hhhcCCCCCCEEEccCCcCcCCC-C--CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccc
Q 038273          373 NQLCRLKQLRLIDLSNNNLFGQI-P--GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT  449 (623)
Q Consensus       373 ~~~~~l~~L~~L~l~~n~l~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  449 (623)
                      ..+..+++|++|++++|++.+.. +  ..+.                      .+++|+.|++++|.+++..|..+..++
T Consensus       443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~  500 (606)
T 3t6q_A          443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----------------------TLGRLEILVLSFCDLSSIDQHAFTSLK  500 (606)
T ss_dssp             TTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------GCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HHHhCCCCCCEEECCCCCCCccccccchhhc----------------------cCCCccEEECCCCccCccChhhhcccc
Confidence            99999999999999999997632 1  2233                      356999999999999999999999999


Q ss_pred             cCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      +|+.|++++|++++..|+.+.++++| .|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus       501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999 99999999999999999999999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.4e-50  Score=440.83  Aligned_cols=480  Identities=18%  Similarity=0.153  Sum_probs=410.7

Q ss_pred             CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273           15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL   94 (623)
Q Consensus        15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (623)
                      .-++++.+++.++.....    ++ .++++|++++|++.+..+..+.++++|++|++++|.++ .++...|.++++|++|
T Consensus        12 ~~~~~~c~~~~l~~ip~~----~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVPDD----IP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             TTTEEECTTSCCSSCCTT----SC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCceEccCCCcccCCCC----CC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEe
Confidence            456899998887654332    22 38999999999999888889999999999999999999 4555556899999999


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccc-cCCcccCCCCCCCEEEccCCc
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLKFLDLSHNQ  173 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~  173 (623)
                      ++++|++++..|..|.++++|++|++++|.+.+..+..+. .+++|++|++++|.+++ .+|..++++++|++|++++|.
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            9999999998899999999999999999999843334444 48899999999999986 469999999999999999999


Q ss_pred             CCcccchHHhhCCCCC----CEEEcccCcCccccccccccCCCCCEEecccccCc-cccCccCcCCCCCcEEEC------
Q 038273          174 LTGEIPEHLVIGCFNL----EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT-GEIPKSLSNCSPLEGLYM------  242 (623)
Q Consensus       174 l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L------  242 (623)
                      ++ .++...+..+.+|    ++|++++|.+.+..+..+... +|+.|++++|.+. +..+..+..+++|+.+++      
T Consensus       165 l~-~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          165 IQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CC-EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             ce-ecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence            98 5554444555544    489999999987766666555 8999999999876 345566677777776665      


Q ss_pred             ---------------------------cCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273          243 ---------------------------SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI  295 (623)
Q Consensus       243 ---------------------------~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  295 (623)
                                                 ..+.+.+..|. +..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+
T Consensus       243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l  319 (606)
T 3vq2_A          243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL  319 (606)
T ss_dssp             TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC
T ss_pred             cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC
Confidence                                       55566666666 8889999999999999974 44 788999999999999999


Q ss_pred             eeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC--CchhhhccccCcEEEcccccccccCch
Q 038273          296 SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN--IPYWIERLTRLRYLILANNNLEGEVPN  373 (623)
Q Consensus       296 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~  373 (623)
                       +.+|.. .+++|++|++++|...+..   .+..+++|++|++++|.+++.  .+..+..+++|+.|++++|.+.+ .|.
T Consensus       320 -~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~  393 (606)
T 3vq2_A          320 -KQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA  393 (606)
T ss_dssp             -SSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred             -cccccC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence             577866 9999999999999665544   377899999999999999865  37889999999999999999985 557


Q ss_pred             hhcCCCCCCEEEccCCcCcCCCC-CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCC
Q 038273          374 QLCRLKQLRLIDLSNNNLFGQIP-GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIR  452 (623)
Q Consensus       374 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  452 (623)
                      .+..+++|+.|++++|++.+..+ ..+..                      +++|+.|++++|.+++..|..+..+++|+
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLS----------------------LEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTT----------------------CTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhc----------------------cccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            89999999999999999987766 44443                      45999999999999999999999999999


Q ss_pred             eeeCCCCcccc-cCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCC
Q 038273          453 ALNFSHNNLTG-VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN  531 (623)
Q Consensus       453 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~N  531 (623)
                      +|++++|.+++ ..|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++|
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            99999999997 47899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 038273          532 PLL  534 (623)
Q Consensus       532 p~~  534 (623)
                      +..
T Consensus       532 ~l~  534 (606)
T 3vq2_A          532 RIE  534 (606)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-50  Score=450.87  Aligned_cols=476  Identities=21%  Similarity=0.160  Sum_probs=400.3

Q ss_pred             CccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChH-Hh
Q 038273            7 LEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNW-LL   85 (623)
Q Consensus         7 ~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~   85 (623)
                      ..+|.++++|++|||++|......++. .+..+.+|++|+|++|.+.+..|..++++++|++|++++|.+++.+|.. .+
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            457999999999999999655443221 2344459999999999999889999999999999999999998766553 45


Q ss_pred             hCCCCCCEEEccCCcCcCcCC-CCCCCCCCCCEEEccCCCCCCCCChhhhhc-CCCccEEecccCcccccCCcccCCCCC
Q 038273           86 ENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLHVSKNFFQGNIPLEIGVY-FPRLVYLNLSRNDFNGSIPSSIGDMNS  163 (623)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~  163 (623)
                      .++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+... .++|+.|++++|.+.+..|..+..+++
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~  199 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN  199 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence            899999999999999988655 468999999999999999997777776652 169999999999999888887777766


Q ss_pred             ------CCEEEccCCcCCcccchHHhh-----------------------------------C--CCCCCEEEcccCcCc
Q 038273          164 ------LKFLDLSHNQLTGEIPEHLVI-----------------------------------G--CFNLEYLVLSENSLH  200 (623)
Q Consensus       164 ------L~~L~l~~n~l~~~~~~~~~~-----------------------------------~--l~~L~~L~l~~n~l~  200 (623)
                            |++|++++|.+++.++..+..                                   +  .++|++|++++|.+.
T Consensus       200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~  279 (844)
T 3j0a_A          200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF  279 (844)
T ss_dssp             TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred             ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence                  999999999877555443322                                   1  268999999999999


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                      +..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  359 (844)
T 3j0a_A          280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK  359 (844)
T ss_dssp             EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred             ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence            98899999999999999999999998899999999999999999999988899999999999999999999988888899


Q ss_pred             CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcE
Q 038273          281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRY  359 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  359 (623)
                      .+++|+.|++++|.+.+ ++   .+++|+.+++++|.+. .++..    ..+++.|++++|++.+... ..+..+++|+.
T Consensus       360 ~l~~L~~L~Ls~N~l~~-i~---~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~  430 (844)
T 3j0a_A          360 FLEKLQTLDLRDNALTT-IH---FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQI  430 (844)
T ss_dssp             SCCCCCEEEEETCCSCC-CS---SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred             CCCCCCEEECCCCCCCc-cc---CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccce
Confidence            99999999999999873 22   3789999999999985 44432    4689999999999997533 34568999999


Q ss_pred             EEcccccccccCch-hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc
Q 038273          360 LILANNNLEGEVPN-QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT  438 (623)
Q Consensus       360 L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  438 (623)
                      |++++|++.+..+. .+..+++|+.|++++|.+....+.....                 .....+++|+.|++++|.++
T Consensus       431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW-----------------DVFEGLSHLQVLYLNHNYLN  493 (844)
T ss_dssp             EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS-----------------SCSSCBCCEECCCCCHHHHT
T ss_pred             eeCCCCcccccccccccccCCccccccCCCCccccccccccch-----------------hhhcCcccccEEECCCCccc
Confidence            99999999865433 4567899999999999997544321110                 01123579999999999999


Q ss_pred             ccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          439 GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       439 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      +..|..+..+++|+.|+|++|.+++..+..+.  ++|+.|+|++|++++..|+.+   .+|+.+++++|++.+..+
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            99999999999999999999999988887776  899999999999999888775   478999999999987554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-49  Score=429.49  Aligned_cols=487  Identities=19%  Similarity=0.167  Sum_probs=335.0

Q ss_pred             CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273           15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL   94 (623)
Q Consensus        15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (623)
                      ++++||+++|.+....+..  +..+.+|++|++++|++.+..+..+.++++|++|++++|.++ .++...|.++++|++|
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SCCEEECCSCCCCEECTTT--TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             cccEEEccCCccCccChhH--hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence            4555555555544332221  122225555555555555444455555555555555555555 3333333555555555


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC----CEEEc
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL----KFLDL  169 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l  169 (623)
                      ++++|++++..+..+.++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..++.+++|    +.|++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            555555554444445555555555555555543 23444443 4455555555555554444445444444    45555


Q ss_pred             cCCcCCcccchHHhhCCCCCCEEEcccCcCcc-ccccccccCCCCCEEeccccc------CccccCccCcCCCC--CcEE
Q 038273          170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG-QLFYKKIYLRKLARLHLDANY------CTGEIPKSLSNCSP--LEGL  240 (623)
Q Consensus       170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~l~~--L~~L  240 (623)
                      ++|.+. .++...+... +|++|++++|.... ..+..+..+++++...+....      +.......+..+++  ++.+
T Consensus       185 ~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          185 SLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             TTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             CCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence            555555 3333333322 45555555543221 122223333444333332211      11111222333332  4566


Q ss_pred             ECcCC-cCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCcccc
Q 038273          241 YMSDN-NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLY  319 (623)
Q Consensus       241 ~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~  319 (623)
                      +++++ .+.+..+..+..+++|++|++++|.+. ..|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~  338 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGG  338 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSC
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccc
Confidence            66666 666778888999999999999999998 567777788 9999999999987 5554 46889999999999986


Q ss_pred             ccCCCCCccCCCceeEEeCCCCcCCCCC--chhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCC-
Q 038273          320 GPLKYGTFFNRSSIVTLDLSYNSFSGNI--PYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP-  396 (623)
Q Consensus       320 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  396 (623)
                      +..+.   ..+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+ 
T Consensus       339 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             CBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred             ccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence            65553   67899999999999998654  78899999999999999999865544 9999999999999999987655 


Q ss_pred             CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCccc-ccCCccCCCCCCC
Q 038273          397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT-GVIPVSFSNLKQV  475 (623)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  475 (623)
                      ..+.                      .+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|
T Consensus       415 ~~~~----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          415 SVFL----------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             CTTT----------------------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             hhhh----------------------cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            2333                      3569999999999999999999999999999999999997 5788999999999


Q ss_pred             cEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          476 ESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       476 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      ++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++||+.|+|
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            99999999999998999999999999999999999998888999999999999999999944

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.6e-48  Score=416.06  Aligned_cols=474  Identities=18%  Similarity=0.203  Sum_probs=392.1

Q ss_pred             ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC
Q 038273            8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN   87 (623)
Q Consensus         8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~   87 (623)
                      ..|.++++|++||+++|.+....+..  +..+.+|++|++++|.+.+..|..+..+++|++|++++|.++ .++...+.+
T Consensus        46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~  122 (570)
T 2z63_A           46 YSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH  122 (570)
T ss_dssp             TTTTTCSSCCEEECTTCCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTT
T ss_pred             hHhhCCCCceEEECCCCcCCccCccc--ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccc
Confidence            47899999999999999887654433  234459999999999999888899999999999999999998 566544689


Q ss_pred             CCCCCEEEccCCcCcCc-CCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc----cEEecccCcccccCCcccCCCC
Q 038273           88 NTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL----VYLNLSRNDFNGSIPSSIGDMN  162 (623)
Q Consensus        88 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~  162 (623)
                      +++|++|++++|.+++. .|..+.++++|++|++++|.+.+..|..+.. +++|    +.|++++|.+++..+..+... 
T Consensus       123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-  200 (570)
T 2z63_A          123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-  200 (570)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-
T ss_pred             cccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-
Confidence            99999999999999873 5888999999999999999998544444544 5677    899999999998888888766 


Q ss_pred             CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcC------ccccccccccCCC--CCEEecccc-cCccccCccCcC
Q 038273          163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL------HGQLFYKKIYLRK--LARLHLDAN-YCTGEIPKSLSN  233 (623)
Q Consensus       163 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~~~~~~~--L~~L~l~~n-~~~~~~~~~~~~  233 (623)
                      +|+.|++++|..........+.++..++.+.+....+      .......+..+.+  ++.++++++ .+.+..+..+..
T Consensus       201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~  280 (570)
T 2z63_A          201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC  280 (570)
T ss_dssp             EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred             cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence            8999999998654333344456788888776654322      1122233333333  456777776 667778888999


Q ss_pred             CCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEc
Q 038273          234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL  313 (623)
Q Consensus       234 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  313 (623)
                      +++|+.|++++|.+. .+|..+..+ +|++|++++|.+. ..|.  ..+++|+.|++++|.+.+..+. ..+++|++|++
T Consensus       281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l  354 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDL  354 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEEC
T ss_pred             cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeC
Confidence            999999999999988 577778888 9999999999998 4443  4788999999999998766655 67899999999


Q ss_pred             cCccccccCC-CCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCc-hhhcCCCCCCEEEccCCcC
Q 038273          314 SKNMLYGPLK-YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP-NQLCRLKQLRLIDLSNNNL  391 (623)
Q Consensus       314 ~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l  391 (623)
                      ++|.+.+... ...+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  433 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT  433 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence            9999865421 12377889999999999999865554 8889999999999999987655 5788999999999999999


Q ss_pred             cCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc-ccCCccccccccCCeeeCCCCcccccCCccCC
Q 038273          392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT-GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS  470 (623)
Q Consensus       392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  470 (623)
                      .+..|..+..                      +++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..|.
T Consensus       434 ~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          434 RVAFNGIFNG----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             EECCTTTTTT----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cccchhhhhc----------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            8887776654                      459999999999998 57889999999999999999999999899999


Q ss_pred             CCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCC
Q 038273          471 NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE  515 (623)
Q Consensus       471 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~  515 (623)
                      .+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999999988888899999999999999999988775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.6e-48  Score=415.29  Aligned_cols=466  Identities=19%  Similarity=0.176  Sum_probs=297.8

Q ss_pred             CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCE
Q 038273           14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNT   93 (623)
Q Consensus        14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (623)
                      ++|++|++++|.+....+..  +..+.+|++|++++|++.+..|.++.++++|++|++++|.++ .++...+.++++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGD--LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSST--TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccChhh--hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcE
Confidence            45666666666655443322  122236666666666666555566666666666666666666 344443466666666


Q ss_pred             EEccCCcCcCc-CCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCC
Q 038273           94 LVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHN  172 (623)
Q Consensus        94 L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  172 (623)
                      |++++|.+++. .+..+.++++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+.++++|++|+++.|
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            66666666542 34456666666666666665333555433333556666666666666666666666666666666666


Q ss_pred             cCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccc
Q 038273          173 QLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP  252 (623)
Q Consensus       173 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  252 (623)
                      .+. .++...+..+++|++|++++|.+.+.....                     ......+++|+.|++++|.+++..+
T Consensus       183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSP---------------------LPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC---------------------CSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             ccc-ccchhhHhhcccccEEEccCCccccccccc---------------------cchhhhhhcccceeccccccchhHH
Confidence            655 555555555666666666666655421100                     0111233445555555554443222


Q ss_pred             h----hccCCCCCCEEECccccccccc------cccccCCCCCcEEeCcCccceeeCCC--C----CCCCcccEEEccCc
Q 038273          253 A----WLGNLSSLNDIMMAINHLQGPI------PLEFCQLNYLEILDLSENNISGTLPS--C----SSHSTIQQVHLSKN  316 (623)
Q Consensus       253 ~----~l~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~--~----~~~~~L~~L~l~~n  316 (623)
                      .    .+..+++|+.+++++|.+.+..      ...+..+++++.|++.++.+......  .    ....+|+.+++++|
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n  320 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS  320 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred             HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence            1    2233445555555555444321      12234556666666666554321100  0    02356788888888


Q ss_pred             cccccCCCCCccCCCceeEEeCCCCcCCCCCch---hhhccccCcEEEcccccccccCc--hhhcCCCCCCEEEccCCcC
Q 038273          317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY---WIERLTRLRYLILANNNLEGEVP--NQLCRLKQLRLIDLSNNNL  391 (623)
Q Consensus       317 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l  391 (623)
                      .+ ..+|...+..+++|++|++++|++.+..|.   .+..+++|+.|++++|++++..+  ..+..+++|++|++++|++
T Consensus       321 ~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          321 KV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             CC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             cc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            77 356655445788899999999988876543   36678899999999999875432  4578889999999999988


Q ss_pred             cCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCC
Q 038273          392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN  471 (623)
Q Consensus       392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  471 (623)
                      + .+|..+..                      +++|++|++++|.++ .+|..+.  ++|++|++++|.+++..    ..
T Consensus       400 ~-~lp~~~~~----------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~  449 (549)
T 2z81_A          400 H-PMPDSCQW----------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LF  449 (549)
T ss_dssp             C-CCCSCCCC----------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CC
T ss_pred             c-cCChhhcc----------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----cc
Confidence            7 34543332                      358999999999987 4444332  58999999999998643    57


Q ss_pred             CCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          472 LKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       472 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +++|++|+|++|+++ .+|+ ...+++|++|++++|++++..|..+..+++|+.+++++||+.|+|
T Consensus       450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            889999999999998 5665 467899999999999999998888889999999999999999944

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.3e-46  Score=400.62  Aligned_cols=449  Identities=18%  Similarity=0.177  Sum_probs=344.5

Q ss_pred             ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCC-cCChHHhh
Q 038273            8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFPNWLLE   86 (623)
Q Consensus         8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~   86 (623)
                      ..|.++++|++|++++|.+....+..  +....+|++|++++|++++..|..++++++|++|++++|.+++ ..|.. +.
T Consensus        44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~  120 (549)
T 2z81_A           44 GDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FP  120 (549)
T ss_dssp             STTSSCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-CT
T ss_pred             hhhhcCCcccEEECCCCCcCccChhh--ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-hh
Confidence            46899999999999999988665443  2334499999999999998888889999999999999999984 23443 58


Q ss_pred             CCCCCCEEEccCCc-CcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC
Q 038273           87 NNTNLNTLVLRNNS-LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK  165 (623)
Q Consensus        87 ~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  165 (623)
                      ++++|++|++++|. +....+..+.++++|++|++++|.+.+.+|..+.. +++|++|+++.|.+.......+..+++|+
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  199 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVR  199 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc-cccCceEecccCcccccchhhHhhccccc
Confidence            99999999999998 44555578999999999999999999778877776 78999999999998744333346799999


Q ss_pred             EEEccCCcCCccc--chHHhhCCCCCCEEEcccCcCcccccc----ccccCCCCCEEecccccCcccc------CccCcC
Q 038273          166 FLDLSHNQLTGEI--PEHLVIGCFNLEYLVLSENSLHGQLFY----KKIYLRKLARLHLDANYCTGEI------PKSLSN  233 (623)
Q Consensus       166 ~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~------~~~~~~  233 (623)
                      +|++++|++++..  +..+...+++|++|++++|.+.+..+.    .+..+++|+.+++++|.+.+..      ...+..
T Consensus       200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  279 (549)
T 2z81_A          200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE  279 (549)
T ss_dssp             EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred             EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence            9999999998421  233345688999999999988764433    3456788999999988766431      123456


Q ss_pred             CCCCcEEECcCCcCccc-----cchhccCCCCCCEEECccccccccccccc-cCCCCCcEEeCcCccceeeCCCCCCCCc
Q 038273          234 CSPLEGLYMSDNNLYGN-----IPAWLGNLSSLNDIMMAINHLQGPIPLEF-CQLNYLEILDLSENNISGTLPSCSSHST  307 (623)
Q Consensus       234 l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~  307 (623)
                      +++|+.|++.++.+...     .+..+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+..+.      
T Consensus       280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~------  352 (549)
T 2z81_A          280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK------  352 (549)
T ss_dssp             CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH------
T ss_pred             hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc------
Confidence            77788888877765432     1112233456677777776665 333333 4566666666666665532210      


Q ss_pred             ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc--hhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273          308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP--YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID  385 (623)
Q Consensus       308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  385 (623)
                                     ....+..+++|++|++++|++++..+  ..+..+++|++|++++|++. .+|..+..+++|++|+
T Consensus       353 ---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          353 ---------------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             ---------------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred             ---------------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEE
Confidence                           01125667889999999999886533  45888999999999999998 6777888999999999


Q ss_pred             ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273          386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI  465 (623)
Q Consensus       386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  465 (623)
                      +++|.+++. |..                        .+++|++|++++|++++..    ..+++|++|++++|+++ .+
T Consensus       417 Ls~N~l~~l-~~~------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~i  466 (549)
T 2z81_A          417 LSSTGIRVV-KTC------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TL  466 (549)
T ss_dssp             CTTSCCSCC-CTT------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SC
T ss_pred             CCCCCcccc-cch------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cC
Confidence            999998632 221                        1248999999999998643    57889999999999999 45


Q ss_pred             CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      |. ...+++|+.|+|++|++++..|+.+..+++|+.|++++|++++..|
T Consensus       467 p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            55 4678999999999999999888889999999999999999988766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.2e-47  Score=407.50  Aligned_cols=460  Identities=19%  Similarity=0.181  Sum_probs=258.2

Q ss_pred             EEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCC
Q 038273           44 SVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN  123 (623)
Q Consensus        44 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  123 (623)
                      +|++++|+++ .+|..+.  ++|++|++++|.++ .++...+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            4444444444 2333332  44555555555544 233222344555555555555554444444555555555555555


Q ss_pred             CCCCCCChhhhhcCCCccEEecccCcccc-cCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCC--CEEEcccCcC-
Q 038273          124 FFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL--EYLVLSENSL-  199 (623)
Q Consensus       124 ~l~~~~p~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l-  199 (623)
                      .++ .+|..   .+++|++|++++|.+++ ..|..++++++|++|++++|.+++    ..+..+++|  ++|++++|.+ 
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence            554 34443   24455555555555543 234455555555555555555542    112334444  5555555555 


Q ss_pred             -ccccccccccCC-CCCEEecccccCccccC-ccCcCCCCCcEEECcCCc-------CccccchhccCCCCCCEEECccc
Q 038273          200 -HGQLFYKKIYLR-KLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNN-------LYGNIPAWLGNLSSLNDIMMAIN  269 (623)
Q Consensus       200 -~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~l~~n  269 (623)
                       .+..+..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|.       +.+..+ .++.+++|+.|++++|
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence             444444443332 12233444454443322 234455556666665554       333333 4555566666666655


Q ss_pred             ccccccccccc---CCCCCcEEeCcCccceeeCCCC------CCCCcccEEEccCccccccCCCCCccCC---CceeEEe
Q 038273          270 HLQGPIPLEFC---QLNYLEILDLSENNISGTLPSC------SSHSTIQQVHLSKNMLYGPLKYGTFFNR---SSIVTLD  337 (623)
Q Consensus       270 ~~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~  337 (623)
                      .+.+..+..+.   ..++|+.|++++|.+.+.+|..      ..++.|+.+++++|.+  .+|...+..+   .+|+.|+
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence            55432211110   1345666666666665444443      2355566666666555  2332112222   4566666


Q ss_pred             CCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcC--CCCCccccccccCCCCCCCCCC
Q 038273          338 LSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG--QIPGCLDNTSLHNNGDNDGSSA  415 (623)
Q Consensus       338 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~~~~~~~~  415 (623)
                      +++|.+....  ....+++|++|++++|.+.+..|..+..+++|+.|++++|++.+  ..|..+..              
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------------  372 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ--------------  372 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence            6666665322  11456667777777777766566666667777777777776654  22222322              


Q ss_pred             CccccCCCCCCccEEEccCCcccccCCc-cccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccc
Q 038273          416 PTRYKGKPLNKMYGVDLSCNKLTGEIPP-QIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLV  494 (623)
Q Consensus       416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  494 (623)
                              +++|++|++++|.+++.+|. .+..+++|++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       373 --------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          373 --------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             --------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             --------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence                    34677777777777754444 367788888999999988877666654  78999999999988 6777777


Q ss_pred             cCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCC-CCC
Q 038273          495 ELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV-PEA  550 (623)
Q Consensus       495 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~-~~~  550 (623)
                      .+++|++|++++|+++...+..+..+++|+.+++++||+.|     +|+..|. ..|
T Consensus       442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-----~c~~~~~~~~~  493 (520)
T 2z7x_B          442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-----SCPRIDYLSRW  493 (520)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC-----CHHHHHHHHHH
T ss_pred             cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc-----cCCchHHHHHH
Confidence            89999999999999986444447788899999999999999     5655454 444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-47  Score=416.76  Aligned_cols=434  Identities=18%  Similarity=0.238  Sum_probs=228.5

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCC------CC------cCChHHhhCCCCCCEEEccCCcCcCcCCCC
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNL------KG------EFPNWLLENNTNLNTLVLRNNSLSGPFRMP  108 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l------~~------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  108 (623)
                      +++.|+|+++.+.|.+|..++++++|++|++++|.+      .+      .+|...   +.+|+ ++++++.+.+..+..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            788999999999888888899999999999988865      22      344433   23334 445544444433332


Q ss_pred             CCC-------------------CCCCCEEEcc--CCCCCCCCChhhhhcCCCccEEecccCccccc--------------
Q 038273          109 IQP-------------------HWHLDTLHVS--KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS--------------  153 (623)
Q Consensus       109 ~~~-------------------l~~L~~L~l~--~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~--------------  153 (623)
                      +..                   ...++.+.+.  .|.+++ +|..+.. +++|++|++++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence            221                   0111111111  344554 5555444 45566666666655543              


Q ss_pred             ---CCcccC--CCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc-Ccc-ccccccccC------CCCCEEeccc
Q 038273          154 ---IPSSIG--DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS-LHG-QLFYKKIYL------RKLARLHLDA  220 (623)
Q Consensus       154 ---~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~------~~L~~L~l~~  220 (623)
                         +|..+.  ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ ..|..+..+      ++|+.|++++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence               555555  56666666666666555555443 455666666666665 554 455544443      5666666666


Q ss_pred             ccCccccCc--cCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCC-CcEEeCcCcccee
Q 038273          221 NYCTGEIPK--SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY-LEILDLSENNISG  297 (623)
Q Consensus       221 n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~  297 (623)
                      |.++ .+|.  .++.+++|+.|++++|.+++.+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            6655 4554  55566666666666666655555 5555566666666666655 44455555555 666666666555 


Q ss_pred             eCCCCCC---CCcccEEEccCccccccCCCCCcc-------CCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccc
Q 038273          298 TLPSCSS---HSTIQQVHLSKNMLYGPLKYGTFF-------NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL  367 (623)
Q Consensus       298 ~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  367 (623)
                      .+|....   +++|+.|++++|.+.+..+.. +.       .+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence            3343321   224555555555554444333 33       344555555555555533333344455555555555555


Q ss_pred             cccCchhhcCCC-------CCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc
Q 038273          368 EGEVPNQLCRLK-------QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE  440 (623)
Q Consensus       368 ~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  440 (623)
                      ....+..+....       +|+.|++++|+++ .+|..+..                    ..+++|+.|++++|++++ 
T Consensus       470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------TTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------TTCTTCCEEECCSSCCSS-
T ss_pred             CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------------------ccCCCcCEEECCCCCCCC-
Confidence            522222222221       5555555555554 23322210                    012355555555555553 


Q ss_pred             CCccccccccCCeeeC------CCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273          441 IPPQIGKLTSIRALNF------SHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG  511 (623)
Q Consensus       441 ~~~~l~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  511 (623)
                      +|..+..+++|+.|++      ++|.+.+.+|..+..+++|++|+|++|++. .+|..+.  ++|+.|++++|++..
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence            4555555555555555      234444445555555555555555555552 3444333  455555555554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.6e-45  Score=402.21  Aligned_cols=496  Identities=18%  Similarity=0.153  Sum_probs=344.5

Q ss_pred             CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273           15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL   94 (623)
Q Consensus        15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (623)
                      ++++|||++|.++...+..  +..+.+|++|+|++|++++..+.+|.++++|++|+|++|+++ .+|...|.++++|++|
T Consensus        53 ~~~~LdLs~N~i~~l~~~~--f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeCCCCCCCCHHH--HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            7899999999887654433  234448999999999988777888899999999999999988 6777777889999999


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC----CEEEc
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL----KFLDL  169 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l  169 (623)
                      ++++|++++..+..|+++++|++|++++|.+.+ .+|..+.. +++|++|++++|++++..+..+..+.++    ..+++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc-chhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            999999888877788899999999999998874 34554444 7789999999999887777777654443    46778


Q ss_pred             cCCcCCcccchHHhhCCCCCCEEEcccCcCcc-ccccccccCCCCCEEeccccc--------------------------
Q 038273          170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG-QLFYKKIYLRKLARLHLDANY--------------------------  222 (623)
Q Consensus       170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~--------------------------  222 (623)
                      +.|.+. .++...+ ....++.+++.+|.... ..+..+..+..++...+..+.                          
T Consensus       209 s~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l  286 (635)
T 4g8a_A          209 SLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  286 (635)
T ss_dssp             TTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred             ccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence            888877 6665554 34455666666664332 112223333344333332111                          


Q ss_pred             ----Cc---cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273          223 ----CT---GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI  295 (623)
Q Consensus       223 ----~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  295 (623)
                          ..   ......+....+++.+.+.++.+...  ..+.....++.|++.+|.+....+   ..+..|+.+++..|..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG  361 (635)
T ss_dssp             EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred             hhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence                10   11122233444555555555554322  223444556666666665553322   2344556666666555


Q ss_pred             eeeCCCCCCCCcccEEEccCcccccc--CCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccC-c
Q 038273          296 SGTLPSCSSHSTIQQVHLSKNMLYGP--LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEV-P  372 (623)
Q Consensus       296 ~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~  372 (623)
                      . ..+....+++|+.+++++|.+...  .+. .+..+.+++.+++..+.... .+..+..+++|+.++++.+...... .
T Consensus       362 ~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~  438 (635)
T 4g8a_A          362 G-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF  438 (635)
T ss_dssp             C-CBCCCCBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred             C-CCcccccccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence            4 223333456666666666655321  111 13445566666666665553 3334555667777777666654332 3


Q ss_pred             hhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc-ccCCccccccccC
Q 038273          373 NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT-GEIPPQIGKLTSI  451 (623)
Q Consensus       373 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L  451 (623)
                      ..+..+++++.++++.|.+.+..+..+..                      ++.++.|++++|.+. +..|..+..+++|
T Consensus       439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~----------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          439 SVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTT----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ccccccccccccccccccccccccccccc----------------------chhhhhhhhhhcccccccCchhhhhcccc
Confidence            44666677777777777776655554443                      459999999999854 4578889999999


Q ss_pred             CeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCcccc-CCCCCccccC
Q 038273          452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQF-TTFKEDSYEG  530 (623)
Q Consensus       452 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~l~~  530 (623)
                      ++|+|++|+++++.|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|+.+..+ ++|+.+++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            999999999999999999999999999999999999989999999999999999999999999998887 6899999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 038273          531 NPLLCGKPLPDCDVAAVPEAS  551 (623)
Q Consensus       531 Np~~C~~~l~~C~~~~~~~~~  551 (623)
                      |||.|     +|+..|+..|.
T Consensus       577 Np~~C-----~C~~~~~~~wl  592 (635)
T 4g8a_A          577 NDFAC-----TCEHQSFLQWI  592 (635)
T ss_dssp             CCBCC-----SGGGHHHHHHH
T ss_pred             CCCcc-----cCCcHHHHHHH
Confidence            99999     67766666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.4e-47  Score=413.41  Aligned_cols=444  Identities=17%  Similarity=0.203  Sum_probs=367.1

Q ss_pred             CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCC------C-----CCCCCEEEccCCCCCCCCChh
Q 038273           64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQ------P-----HWHLDTLHVSKNFFQGNIPLE  132 (623)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------~-----l~~L~~L~l~~n~l~~~~p~~  132 (623)
                      .+++.|+|+++.+.|.+|..+ +++++|++|+|++|.+.... ..++      .     +..|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccCchhh
Confidence            579999999999999999875 89999999999999762110 1111      1     33566 777777777776666


Q ss_pred             hhhcCCCccEEecc--------------------cCcccccCCcccCCCCCCCEEEccCCcCCcc---------------
Q 038273          133 IGVYFPRLVYLNLS--------------------RNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE---------------  177 (623)
Q Consensus       133 ~~~~l~~L~~L~L~--------------------~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------  177 (623)
                      +...+.++..+++.                    .|++++ +|..++++++|++|++++|.+++.               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence            55333222222222                    578887 899999999999999999999964               


Q ss_pred             --cchHHh-hCCCCCCEEEcccCcCccccccccccCCCCCEEeccccc-Ccc-ccCccCcCC------CCCcEEECcCCc
Q 038273          178 --IPEHLV-IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY-CTG-EIPKSLSNC------SPLEGLYMSDNN  246 (623)
Q Consensus       178 --~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~L~~n~  246 (623)
                        +|..+. .++++|++|++++|.+.+..|..+.++++|+.|++++|+ +++ .+|..++.+      ++|++|++++|+
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence              887762 279999999999999999999999999999999999998 888 788777765      999999999999


Q ss_pred             Cccccch--hccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCC-CCCCc-ccEEEccCccccccC
Q 038273          247 LYGNIPA--WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC-SSHST-IQQVHLSKNMLYGPL  322 (623)
Q Consensus       247 l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~-L~~L~l~~n~l~~~~  322 (623)
                      ++ .+|.  .++.+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|.. ..+++ |++|++++|.+. .+
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l  392 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI  392 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence            99 7787  89999999999999999998888 8999999999999999999 55544 46788 999999999997 66


Q ss_pred             CCCCccCC--CceeEEeCCCCcCCCCCchhhh-------ccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcC
Q 038273          323 KYGTFFNR--SSIVTLDLSYNSFSGNIPYWIE-------RLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG  393 (623)
Q Consensus       323 ~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  393 (623)
                      |.. +...  ++|++|++++|.+.+..|..+.       .+++|+.|++++|.+....+..+..+++|+.|++++|+++.
T Consensus       393 p~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~  471 (636)
T 4eco_A          393 PNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE  471 (636)
T ss_dssp             CSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred             chh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence            654 5554  4899999999999998888887       78899999999999996555667789999999999999984


Q ss_pred             CCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccc--ccccCCeeeCCCCcccccCCccCCC
Q 038273          394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG--KLTSIRALNFSHNNLTGVIPVSFSN  471 (623)
Q Consensus       394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~  471 (623)
                      ..+..+....               .....+++|+.|++++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+..
T Consensus       472 i~~~~~~~~~---------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~  534 (636)
T 4eco_A          472 IPKNSLKDEN---------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN  534 (636)
T ss_dssp             CCSSSSEETT---------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred             cCHHHhcccc---------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc
Confidence            3333332210               00112348999999999999 7888887  99999999999999997 7889999


Q ss_pred             CCCCcEEEC------CCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273          472 LKQVESLDV------SYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG  536 (623)
Q Consensus       472 l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~  536 (623)
                      +++|+.|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.+++++||+.|-
T Consensus       535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            999999999      56788889999999999999999999999 56777654  8999999999999983

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-46  Score=414.53  Aligned_cols=461  Identities=18%  Similarity=0.220  Sum_probs=318.6

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEc-cCCCCCCcCChHHhhCCCCCCE-----E---------Ec-cCCcCc--
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDF-SDSNLKGEFPNWLLENNTNLNT-----L---------VL-RNNSLS--  102 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~~l~~L~~-----L---------~L-~~n~i~--  102 (623)
                      +++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|..|-........+..     +         .. ....+.  
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            7999999999999999999999999999999 7776654422110000000000     0         00 000000  


Q ss_pred             ---------CcCCCCCCCCCCCCEEEccC--CCCCCCCChhhhhcCCCccEEecccCcccc-----------------cC
Q 038273          103 ---------GPFRMPIQPHWHLDTLHVSK--NFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-----------------SI  154 (623)
Q Consensus       103 ---------~~~~~~~~~l~~L~~L~l~~--n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~-----------------~~  154 (623)
                               ...+........++.+.+..  |.+++ +|..+.. +++|+.|+|++|.+++                 .+
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                     00000011112222222222  44553 5655554 5566666666666665                 26


Q ss_pred             CcccC--CCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc-Ccc-ccccccccCC-------CCCEEecccccC
Q 038273          155 PSSIG--DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS-LHG-QLFYKKIYLR-------KLARLHLDANYC  223 (623)
Q Consensus       155 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~-------~L~~L~l~~n~~  223 (623)
                      |..++  ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ ..|..+..++       +|+.|++++|.+
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            66665  77777777777777666666544 567777777777776 665 5555444443       777777777777


Q ss_pred             ccccCc--cCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCC-CcEEeCcCccceeeCC
Q 038273          224 TGEIPK--SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY-LEILDLSENNISGTLP  300 (623)
Q Consensus       224 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~  300 (623)
                      + .+|.  .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            7 5666  6777777777777777777 555 6777777777787777777 56666777777 888888888777 555


Q ss_pred             CCCC---CCcccEEEccCccccccCCCCC--c--cCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCch
Q 038273          301 SCSS---HSTIQQVHLSKNMLYGPLKYGT--F--FNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN  373 (623)
Q Consensus       301 ~~~~---~~~L~~L~l~~n~l~~~~~~~~--~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  373 (623)
                      ....   .++|+.|++++|.+.+.++...  +  ..+++|+.|++++|.++...+..+..+++|+.|++++|++. .+|.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            4442   2348888888888766554211  1  23458999999999999544445568999999999999998 4454


Q ss_pred             hhcC--------CCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc
Q 038273          374 QLCR--------LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI  445 (623)
Q Consensus       374 ~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  445 (623)
                      ....        +++|+.|++++|+++ .+|..+..                    ..+++|+.|++++|.+++ +|..+
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------~~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------TTLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------TTCTTCCEEECCSSCCSS-CCCGG
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------ccCCCcCEEEeCCCCCCc-cchhh
Confidence            4332        238999999999998 55554430                    135699999999999996 78899


Q ss_pred             cccccCCeeeCCC------CcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccc
Q 038273          446 GKLTSIRALNFSH------NNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQ  519 (623)
Q Consensus       446 ~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  519 (623)
                      ..+++|+.|+|++      |.+.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+..
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence            9999999999976      788889999999999999999999999 57887765  69999999999999887776666


Q ss_pred             cCCCCCccccCCCCCC
Q 038273          520 FTTFKEDSYEGNPLLC  535 (623)
Q Consensus       520 ~~~l~~l~l~~Np~~C  535 (623)
                      ........+.+|+..+
T Consensus       850 ~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          850 YIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             HHHTTCCEEECCTTSE
T ss_pred             cccchheeecCCCccc
Confidence            6666777888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=385.17  Aligned_cols=453  Identities=19%  Similarity=0.184  Sum_probs=368.6

Q ss_pred             cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273           17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL   96 (623)
Q Consensus        17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (623)
                      ++||+++|.++.. +..   ++ .+|++|++++|++.+..|..+.++++|++|++++|.+++..|. .|.++++|++|++
T Consensus         3 ~~l~ls~n~l~~i-p~~---~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIHV-PKD---LS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSSC-CCS---CC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEEC
T ss_pred             ceEecCCCCcccc-ccc---cc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEec
Confidence            6899999998853 332   22 4899999999999988888999999999999999999944454 4689999999999


Q ss_pred             cCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC--CEEEccCCc
Q 038273           97 RNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL--KFLDLSHNQ  173 (623)
Q Consensus        97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~  173 (623)
                      ++|++++. |..  .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++   ..+..+++|  ++|++++|.
T Consensus        77 s~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           77 SHNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CSSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred             CCCceeec-Ccc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence            99999864 444  89999999999999985 46777766 7899999999999885   457777888  999999999


Q ss_pred             C--CcccchHHhhCCC-CCCEEEcccCcCccccc-cccccCCCCCEEeccccc-------CccccCccCcCCCCCcEEEC
Q 038273          174 L--TGEIPEHLVIGCF-NLEYLVLSENSLHGQLF-YKKIYLRKLARLHLDANY-------CTGEIPKSLSNCSPLEGLYM  242 (623)
Q Consensus       174 l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~L  242 (623)
                      +  .+..|..+ ..+. ....+++++|.+.+..+ ..+..+++|+.+++++|.       +.+..+ .++.+++|+.|++
T Consensus       150 l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l  227 (520)
T 2z7x_B          150 TYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL  227 (520)
T ss_dssp             TTTSSCCTTTT-TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred             ccccccccccc-cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccc
Confidence            9  65555543 3333 23366778888766444 467789999999999987       555555 6889999999999


Q ss_pred             cCCcCccccchhcc---CCCCCCEEECccccccccccccc-----cCCCCCcEEeCcCccceeeCCCCC-----CCCccc
Q 038273          243 SDNNLYGNIPAWLG---NLSSLNDIMMAINHLQGPIPLEF-----CQLNYLEILDLSENNISGTLPSCS-----SHSTIQ  309 (623)
Q Consensus       243 ~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~  309 (623)
                      ++|.+.+..+..+.   ..++|++|++++|.+.+..|..+     ..+++|+.+++++|.+  .+|...     ...+++
T Consensus       228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~  305 (520)
T 2z7x_B          228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK  305 (520)
T ss_dssp             EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred             cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence            99988754333221   24699999999999998888887     8999999999999988  444211     125799


Q ss_pred             EEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccc--cCchhhcCCCCCCEEEcc
Q 038273          310 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG--EVPNQLCRLKQLRLIDLS  387 (623)
Q Consensus       310 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~  387 (623)
                      .|++++|.+....   .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+  ..|..+..+++|++|+++
T Consensus       306 ~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          306 NFTVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             EEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             EEEcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            9999999874422   13678999999999999998889999999999999999999986  456789999999999999


Q ss_pred             CCcCcCCCCCc-cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC
Q 038273          388 NNNLFGQIPGC-LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP  466 (623)
Q Consensus       388 ~n~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  466 (623)
                      +|++.+.+|.. +.                      .+++|+.|++++|.+++..|..+.  ++|+.|++++|+++ .+|
T Consensus       383 ~N~l~~~l~~~~~~----------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip  437 (520)
T 2z7x_B          383 QNSVSYDEKKGDCS----------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP  437 (520)
T ss_dssp             SSCCBCCGGGCSCC----------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred             CCcCCcccccchhc----------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence            99998744432 32                      246999999999999887777665  79999999999999 677


Q ss_pred             ccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          467 VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       467 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      ..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            777799999999999999995444448899999999999999987544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-43  Score=380.58  Aligned_cols=457  Identities=20%  Similarity=0.179  Sum_probs=340.0

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ..+++++++|++++ +|..+.  ++|++|++++|.++ .++...|.++++|++|++++|++++..+..|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            55889999998875 565443  78999999999988 555555688999999999999998888888999999999999


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCccccc-CCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCC--CEEEcccC
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-IPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL--EYLVLSEN  197 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n  197 (623)
                      ++|.++ .+|..   .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ ..   +..+++|  ++|++++|
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEES
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecc
Confidence            999988 77776   478999999999998863 35789999999999999998873 22   3445555  99999999


Q ss_pred             cC--ccccccccccCC--CCCEEecccccCccccC-ccCcCCCCCcEEECcCCcCc----cccchhccCCCCCCEEECcc
Q 038273          198 SL--HGQLFYKKIYLR--KLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNNLY----GNIPAWLGNLSSLNDIMMAI  268 (623)
Q Consensus       198 ~l--~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~  268 (623)
                      .+  .+..+..+..+.  .+ .+++++|.+.+..+ ..+..+++|+.+++++|...    ......+..+++|+.+++.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            88  777777766654  22 45677777665444 34567888999999887521    12234577788888888887


Q ss_pred             cccccccccc---ccCCCCCcEEeCcCccceeeCCCCC---CCCcccEEEccCccccc-cCCCCCcc---CCCceeEEeC
Q 038273          269 NHLQGPIPLE---FCQLNYLEILDLSENNISGTLPSCS---SHSTIQQVHLSKNMLYG-PLKYGTFF---NRSSIVTLDL  338 (623)
Q Consensus       269 n~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~L~~L~l~~n~l~~-~~~~~~~~---~~~~L~~L~L  338 (623)
                      +.+.+.....   ....++|+.|++++|.+.+.+|...   ...+++.|.+.++.... .++...+.   ...++++|++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence            7765321111   1234589999999998887766543   12444444444333211 22211111   1256899999


Q ss_pred             CCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCC--CCccccccccCCCCCCCCCCC
Q 038273          339 SYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI--PGCLDNTSLHNNGDNDGSSAP  416 (623)
Q Consensus       339 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~~~~~~~~~~~  416 (623)
                      ++|.+.....  ...+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..  |..+.                
T Consensus       339 ~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----------------  400 (562)
T 3a79_B          339 SDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK----------------  400 (562)
T ss_dssp             ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT----------------
T ss_pred             cCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc----------------
Confidence            9998764321  256789999999999998878888899999999999999987532  22232                


Q ss_pred             ccccCCCCCCccEEEccCCcccccCCc-cccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccccc
Q 038273          417 TRYKGKPLNKMYGVDLSCNKLTGEIPP-QIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE  495 (623)
Q Consensus       417 ~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  495 (623)
                            .+++|+.|++++|.+++.+|. .+..+++|+.|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..
T Consensus       401 ------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~  471 (562)
T 3a79_B          401 ------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH  471 (562)
T ss_dssp             ------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred             ------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence                  346899999999999874554 578889999999999999877666554  78999999999998 67776679


Q ss_pred             CCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          496 LNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       496 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +++|++|++++|+++...+..+..+++|+.+++++||+.|+|
T Consensus       472 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            999999999999999655544888999999999999999943

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.2e-43  Score=384.96  Aligned_cols=444  Identities=18%  Similarity=0.172  Sum_probs=346.2

Q ss_pred             CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc-cCCcCcCcCCCCCCCC-CCCCEEEc---------------cCCCCC
Q 038273           64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL-RNNSLSGPFRMPIQPH-WHLDTLHV---------------SKNFFQ  126 (623)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l-~~L~~L~l---------------~~n~l~  126 (623)
                      .+++.|+|+++.+.|.+|+.+ +++++|++|+| ++|.+.+..+...... ..+....+               ....+.
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            578889999999988888775 88999999999 7887766432211111 00000000               000000


Q ss_pred             CCCChhhh----------hcCCCccEEeccc--CcccccCCcccCCCCCCCEEEccCCcCCc-----------------c
Q 038273          127 GNIPLEIG----------VYFPRLVYLNLSR--NDFNGSIPSSIGDMNSLKFLDLSHNQLTG-----------------E  177 (623)
Q Consensus       127 ~~~p~~~~----------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~  177 (623)
                      +.++..+.          .....++.+.+..  |.+++ +|..+.++++|++|++++|++++                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence            00000000          1122455555554  78887 89999999999999999999996                 2


Q ss_pred             cchHH-hhCCCCCCEEEcccCcCccccccccccCCCCCEEeccccc-Ccc-ccCccCc-------CCCCCcEEECcCCcC
Q 038273          178 IPEHL-VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY-CTG-EIPKSLS-------NCSPLEGLYMSDNNL  247 (623)
Q Consensus       178 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~-------~l~~L~~L~L~~n~l  247 (623)
                      +|..+ |.++++|++|++++|.+.+..|..+.++++|+.|++++|+ +++ .+|..+.       .+++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            88876 4489999999999999999999999999999999999998 887 6776444       455999999999999


Q ss_pred             ccccch--hccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCC-CCCCCc-ccEEEccCccccccCC
Q 038273          248 YGNIPA--WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS-CSSHST-IQQVHLSKNMLYGPLK  323 (623)
Q Consensus       248 ~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~-L~~L~l~~n~l~~~~~  323 (623)
                      + .+|.  .++.+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|. ...+++ |+.|++++|.+. .+|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            9 7787  8999999999999999999 667 8999999999999999998 5654 446777 999999999996 666


Q ss_pred             CCCccCCC--ceeEEeCCCCcCCCCCchh---hh--ccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCC
Q 038273          324 YGTFFNRS--SIVTLDLSYNSFSGNIPYW---IE--RLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP  396 (623)
Q Consensus       324 ~~~~~~~~--~L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  396 (623)
                      .. +...+  +|+.|++++|++.+..|..   +.  .+++|+.|++++|.+....+..+..+++|+.|++++|++....+
T Consensus       636 ~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          636 NI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             SC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             hh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            44 55554  4999999999998766532   22  34589999999999995544555689999999999999983333


Q ss_pred             CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccc--ccccCCeeeCCCCcccccCCccCCCCCC
Q 038273          397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG--KLTSIRALNFSHNNLTGVIPVSFSNLKQ  474 (623)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~  474 (623)
                      ..+....               .....+++|+.|++++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++
T Consensus       715 ~~~~~~~---------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~  777 (876)
T 4ecn_A          715 NSLKPKD---------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ  777 (876)
T ss_dssp             TSSSCTT---------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred             HHhcccc---------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence            3222110               00123458999999999999 7888887  99999999999999997 6888999999


Q ss_pred             CcEEECCC------CcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273          475 VESLDVSY------NNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       475 L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      |+.|+|++      |++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++|+.+++++||+..
T Consensus       778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            99999976      888889999999999999999999999 67787653  699999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-41  Score=355.95  Aligned_cols=380  Identities=21%  Similarity=0.233  Sum_probs=296.1

Q ss_pred             CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273          116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS  195 (623)
Q Consensus       116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  195 (623)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45777777777 7776 2   36899999999999888888899999999999999988767777777889999999999


Q ss_pred             cCcCccccccccccCCCCCEEecccccCccccCc--cCcCCCCCcEEECcCCcCccccchh-ccCCCCCCEEECcccccc
Q 038273          196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK--SLSNCSPLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       196 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~  272 (623)
                      +|.+.+..+..+.++++|++|++++|.+++..+.  .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            9998888888888888899999988888764433  4888888999999988888776765 788888888888888888


Q ss_pred             ccccccccCC--CCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchh
Q 038273          273 GPIPLEFCQL--NYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW  350 (623)
Q Consensus       273 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  350 (623)
                      +..+..+..+  .+|+.|++++|.+.+..+.....               .. ...+..+++|++|++++|.+++..+..
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EK-CGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HH-HCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccc---------------cc-cccccccceeeeEecCCCcccccchhh
Confidence            7777666554  56777777777665322221100               00 001334567777777777777666666


Q ss_pred             hhcc---ccCcEEEccccccccc----------Cchhhc--CCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCC
Q 038273          351 IERL---TRLRYLILANNNLEGE----------VPNQLC--RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA  415 (623)
Q Consensus       351 ~~~l---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~  415 (623)
                      +...   ++|+.|++++|...+.          .+..+.  ..++|+.|++++|.+.+..|..+...             
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-------------  298 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-------------  298 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-------------
T ss_pred             hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-------------
Confidence            5543   6777777777654322          111222  23689999999999887777766543             


Q ss_pred             CccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccccc
Q 038273          416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE  495 (623)
Q Consensus       416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  495 (623)
                               ++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..
T Consensus       299 ---------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          299 ---------TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             ---------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ---------CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence                     48999999999999888888999999999999999998888889999999999999999999888889999


Q ss_pred             CCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273          496 LNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  538 (623)
Q Consensus       496 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~  538 (623)
                      +++|++|++++|++++..+..+..+++|+.+++++||+.|+|+
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999999999998777778889999999999999999554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-41  Score=365.41  Aligned_cols=461  Identities=18%  Similarity=0.155  Sum_probs=351.8

Q ss_pred             ccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCC
Q 038273           10 FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNT   89 (623)
Q Consensus        10 l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~   89 (623)
                      -..+...+++|++++.++... ..   ++ .+|++|++++|++.+..+..+.++++|++|++++|.+++ ++...|.+++
T Consensus        27 ~~~~~~~~~l~ls~~~L~~ip-~~---~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~  100 (562)
T 3a79_B           27 PFSNELESMVDYSNRNLTHVP-KD---LP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQ  100 (562)
T ss_dssp             ------CCEEECTTSCCCSCC-TT---SC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCT
T ss_pred             ccccCCCcEEEcCCCCCccCC-CC---CC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCC
Confidence            345566799999999988533 22   22 489999999999998888899999999999999999994 5444468999


Q ss_pred             CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC--CE
Q 038273           90 NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL--KF  166 (623)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~  166 (623)
                      +|++|++++|+++.. |..  .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.++..   .+..+++|  ++
T Consensus       101 ~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~  173 (562)
T 3a79_B          101 DLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSC  173 (562)
T ss_dssp             TCCEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred             CCCEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeE
Confidence            999999999999864 433  89999999999999984 23456655 78999999999998853   45555555  99


Q ss_pred             EEccCCcC--CcccchHHhhCCC-CCCEEEcccCcCcccccc-ccccCCCCCEEecccccCc----cccCccCcCCCCCc
Q 038273          167 LDLSHNQL--TGEIPEHLVIGCF-NLEYLVLSENSLHGQLFY-KKIYLRKLARLHLDANYCT----GEIPKSLSNCSPLE  238 (623)
Q Consensus       167 L~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~  238 (623)
                      |++++|.+  ++..|..+ ..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|...    ......+..+++|+
T Consensus       174 L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~  252 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL  252 (562)
T ss_dssp             EEEEESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred             EEeecccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence            99999998  65555443 3333 122557778877664443 4567889999999998521    01223467889999


Q ss_pred             EEECcCCcCccccchh---ccCCCCCCEEECccccccccccccc-----cCCCCCcEEeCcCccceeeCCCC-----CCC
Q 038273          239 GLYMSDNNLYGNIPAW---LGNLSSLNDIMMAINHLQGPIPLEF-----CQLNYLEILDLSENNISGTLPSC-----SSH  305 (623)
Q Consensus       239 ~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~-----~~~  305 (623)
                      .+++.++.+.+.....   ....++|++|++++|.+.+.+|..+     ..++.|+.++++.+.+  .+|..     ...
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~  330 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE  330 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred             EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence            9999888765432111   1234589999999999998777766     5666666666666654  22211     123


Q ss_pred             CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccC--chhhcCCCCCCE
Q 038273          306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEV--PNQLCRLKQLRL  383 (623)
Q Consensus       306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~  383 (623)
                      .++++|++++|.+....   ....+++|++|++++|.+++..|..+..+++|+.|++++|++.+..  |..+..+++|+.
T Consensus       331 ~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             CcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            57999999999874321   1267899999999999999888999999999999999999998633  567899999999


Q ss_pred             EEccCCcCcCCCCC-ccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCccc
Q 038273          384 IDLSNNNLFGQIPG-CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT  462 (623)
Q Consensus       384 L~l~~n~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  462 (623)
                      |++++|++.+.+|. .+..                      +++|+.|++++|.+++..|..+.  ++|+.|++++|.++
T Consensus       408 L~l~~N~l~~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAW----------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCC----------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             EECCCCcCCCccChhhhcC----------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence            99999999874543 2332                      46999999999999877776654  79999999999999


Q ss_pred             ccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          463 GVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                       .+|..+..+++|++|+|++|+++...+..+..+++|+.|++++|++.+..+
T Consensus       464 -~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          464 -SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             -CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             -ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence             566666699999999999999995444448999999999999999987655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.6e-40  Score=345.88  Aligned_cols=383  Identities=17%  Similarity=0.174  Sum_probs=208.8

Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCc-CCCCCCCCCCCCEEEcc
Q 038273           43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVS  121 (623)
Q Consensus        43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~  121 (623)
                      +.++.+++++. .+|. +  .++|++|++++|.+++..|.. +.++++|++|++++|.+.+. .+..|.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34555555543 2333 1  145555555555555322322 35555555555555555422 23445555555555555


Q ss_pred             CCCCCCCCChhhhhcCCCccEEecccCcccccCCcc--cCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcC
Q 038273          122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS--IGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL  199 (623)
Q Consensus       122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  199 (623)
                      +|.+.+..|..+.. +++|++|++++|.+++..+..  +.++++|++|++++|.+++..|..++.++++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            55554333333332 445555555555544322222  444455555555555444222333334444444444444444


Q ss_pred             ccccccccccCCCCCEEecccccCccccCccCcCC--CCCcEEECcCCcCccccchh--------ccCCCCCCEEECccc
Q 038273          200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC--SPLEGLYMSDNNLYGNIPAW--------LGNLSSLNDIMMAIN  269 (623)
Q Consensus       200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~l~~n  269 (623)
                                              ++..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|
T Consensus       167 ------------------------~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          167 ------------------------KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             ------------------------SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             ------------------------cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence                                    44444433333  34555555555544332222        123345555555555


Q ss_pred             cccccccccccC---CCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC
Q 038273          270 HLQGPIPLEFCQ---LNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN  346 (623)
Q Consensus       270 ~~~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  346 (623)
                      .+.+..+..+..   .++|+.|++++|...+...                                      ..+.+.+.
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------------~~~~~~~~  264 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------------------------------GHTNFKDP  264 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------------------------------TCCSSCCC
T ss_pred             cccccchhhhhccccccceeeEeecccccccccc--------------------------------------chhhhccC
Confidence            555444443322   2455555555554321100                                      00011111


Q ss_pred             Cchhhhc--cccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCC
Q 038273          347 IPYWIER--LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL  424 (623)
Q Consensus       347 ~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  424 (623)
                      .+..+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+..                      +
T Consensus       265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------l  322 (455)
T 3v47_A          265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----------------------L  322 (455)
T ss_dssp             CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----------------------C
T ss_pred             cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----------------------c
Confidence            1111111  245666666666666555666666666666666666666555544433                      2


Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273          425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV  504 (623)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  504 (623)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus       323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence            36666777777776667778888899999999999998888888999999999999999999777777888999999999


Q ss_pred             ccCcccccCCC
Q 038273          505 AHNNLSGKIPE  515 (623)
Q Consensus       505 ~~N~l~~~~~~  515 (623)
                      ++|++++..|.
T Consensus       403 ~~N~l~~~~~~  413 (455)
T 3v47_A          403 HTNPWDCSCPR  413 (455)
T ss_dssp             CSSCBCCCTTT
T ss_pred             cCCCcccCCCc
Confidence            99999887773

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.7e-39  Score=353.33  Aligned_cols=471  Identities=20%  Similarity=0.194  Sum_probs=372.0

Q ss_pred             ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC
Q 038273            8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN   87 (623)
Q Consensus         8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~   87 (623)
                      .+|.++++|++|||++|.++...+..  +..+.+|++|+|++|++++..+.+|.++++|++|++++|.++ .++...|++
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~  146 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH  146 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTT
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhc
Confidence            47999999999999999987655433  234459999999999999877888999999999999999999 677766799


Q ss_pred             CCCCCEEEccCCcCcCc-CCCCCCCCCCCCEEEccCCCCCCCCChhhhh---cCCCccEEecccCcccccCCcccCCCCC
Q 038273           88 NTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV---YFPRLVYLNLSRNDFNGSIPSSIGDMNS  163 (623)
Q Consensus        88 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~  163 (623)
                      +++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..   .......++++.|.+....+..+ ....
T Consensus       147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~  225 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIR  225 (635)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCE
T ss_pred             CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchh
Confidence            99999999999999764 5677889999999999999999555554433   11234578999999986555544 4456


Q ss_pred             CCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc---------------------------------cccccccccC
Q 038273          164 LKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH---------------------------------GQLFYKKIYL  210 (623)
Q Consensus       164 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------------~~~~~~~~~~  210 (623)
                      ++.+++.+|.....++...+.++..++...+..+...                                 ......+...
T Consensus       226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  305 (635)
T 4g8a_A          226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL  305 (635)
T ss_dssp             EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred             hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence            7888998887765666666677777776665422110                                 0112233455


Q ss_pred             CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeC
Q 038273          211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL  290 (623)
Q Consensus       211 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  290 (623)
                      .+++.+++.++.+...  ..+.....++.|++.+|.+....+.   .+..|+.+++..|.....  .....+++|+.+++
T Consensus       306 ~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l  378 (635)
T 4g8a_A          306 TNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL  378 (635)
T ss_dssp             TTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred             cccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchh
Confidence            6788888888776643  2356678899999999988755443   457888999998887643  23457899999999


Q ss_pred             cCccceeeCCCC---CCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcEEEccccc
Q 038273          291 SENNISGTLPSC---SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILANNN  366 (623)
Q Consensus       291 ~~n~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  366 (623)
                      ++|.+.......   ....+++.+++..+..... +.. +..+++|+.++++.+......+ ..+..+++++.++++.|.
T Consensus       379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~  456 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  456 (635)
T ss_dssp             CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred             hccccccccccccchhhhhhhhhhhccccccccc-ccc-ccccccccchhhhhccccccccccccccccccccccccccc
Confidence            999876432221   2577899999998887443 333 7788999999999887665443 467889999999999999


Q ss_pred             ccccCchhhcCCCCCCEEEccCCcCc-CCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc
Q 038273          367 LEGEVPNQLCRLKQLRLIDLSNNNLF-GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI  445 (623)
Q Consensus       367 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  445 (623)
                      +....+..+..++.|+.|++++|++. +..|..+..                      +++|++|++++|++++..|..|
T Consensus       457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------------------l~~L~~L~Ls~N~L~~l~~~~f  514 (635)
T 4g8a_A          457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------LRNLTFLDLSQCQLEQLSPTAF  514 (635)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------CTTCCEEECTTSCCCEECTTTT
T ss_pred             cccccccccccchhhhhhhhhhcccccccCchhhhh----------------------ccccCEEECCCCccCCcChHHH
Confidence            99888889999999999999999854 345555544                      4599999999999999999999


Q ss_pred             cccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccC-CCCCeeecccCcccccC
Q 038273          446 GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLSGKI  513 (623)
Q Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~  513 (623)
                      .++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|+.+..+ ++|++|++++|++.+..
T Consensus       515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            999999999999999999999999999999999999999999999999988 68999999999998753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.5e-38  Score=330.33  Aligned_cols=402  Identities=24%  Similarity=0.284  Sum_probs=213.2

Q ss_pred             CcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCC-------------CCEEEccCCcCcCcCC
Q 038273           40 FQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTN-------------LNTLVLRNNSLSGPFR  106 (623)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~i~~~~~  106 (623)
                      .+|++|++++|++ +.+|..++++++|++|++++|.+.|.+|..+ +.+.+             +++|++++|++++...
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            3799999999998 7889889999999999999998887888765 55554             4888888888776332


Q ss_pred             CCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCC
Q 038273          107 MPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGC  186 (623)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  186 (623)
                          -.++|++|++++|.+++ +|..    .++|++|++++|.+++ ++..   .++|++|++++|+++ .+|.  +.++
T Consensus        89 ----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l  152 (454)
T 1jl5_A           89 ----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS  152 (454)
T ss_dssp             ----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred             ----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence                13678888888888874 6643    3578888888887774 2221   167888888888887 5773  5678


Q ss_pred             CCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEEC
Q 038273          187 FNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMM  266 (623)
Q Consensus       187 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  266 (623)
                      ++|++|++++|.+.+ .|..   .++|+.|++++|.+++ +| .++.+++|+.|++++|.+++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            888888888887765 3332   2477888888887775 44 47777888888888887764 3322   247777888


Q ss_pred             ccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC
Q 038273          267 AINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN  346 (623)
Q Consensus       267 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  346 (623)
                      ++|.+. .+| .+..+++|+.|++++|++.+ +|.  ..++|+.|++++|.+.+ ++..    +++|++|++++|.+++.
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEE
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcc
Confidence            877777 444 36777777778777777763 332  23567777777776643 3321    35666677776666642


Q ss_pred             CchhhhccccCcEEEcccccccccCchhhcCC-CCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCC
Q 038273          347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRL-KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN  425 (623)
Q Consensus       347 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  425 (623)
                       +.   ..++|+.|++++|++.+.     ..+ ++|+.|++++|++++ +|..                         ++
T Consensus       293 -~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~-------------------------~~  337 (454)
T 1jl5_A          293 -SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL-------------------------PP  337 (454)
T ss_dssp             -SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC-------------------------CT
T ss_pred             -cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc-------------------------CC
Confidence             11   014666666666666532     122 366666666666654 2221                         23


Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccc--cCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeee
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTG--VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS  503 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  503 (623)
                      +|+.|++++|.++ .+|.   .+++|++|++++|.+++  .+|..+.      .|  +.|...+.+|..   +++|++|+
T Consensus       338 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~  402 (454)
T 1jl5_A          338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLH  402 (454)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC-------------------
T ss_pred             cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEE
Confidence            5666666666666 3443   34566666666666665  3343332      12  224444444432   37899999


Q ss_pred             cccCcccc--cCCCCccccCCCCCccccCCCCCC
Q 038273          504 VAHNNLSG--KIPEWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       504 l~~N~l~~--~~~~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      +++|++++  .+|      ++++.+++.+|...|
T Consensus       403 ls~N~l~~~~~iP------~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          403 VETNPLREFPDIP------ESVEDLRMNSERVVD  430 (454)
T ss_dssp             ----------------------------------
T ss_pred             CCCCcCCccccch------hhHhheeCcCcccCC
Confidence            99999987  444      345666777777666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.7e-38  Score=328.34  Aligned_cols=414  Identities=22%  Similarity=0.253  Sum_probs=274.9

Q ss_pred             ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCC-------------cEEEccCC
Q 038273            8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDL-------------EYVDFSDS   74 (623)
Q Consensus         8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~ls~n   74 (623)
                      |+-.+.++|++|++++|.+ +..+..  +..+.+|++|++++|.+.+.+|..++++++|             ++|++++|
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~~iP~~--i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-TEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             ccccccccchhhhcccCch-hhCChh--HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            3445679999999999998 455543  2333489999999999999999999998875             99999999


Q ss_pred             CCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccC
Q 038273           75 NLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSI  154 (623)
Q Consensus        75 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~  154 (623)
                      .++ .+|.    ..++|++|++++|.+++ +|..   .++|++|++++|.+. .+|..    .++|++|++++|.+++ +
T Consensus        82 ~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-l  146 (454)
T 1jl5_A           82 GLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-L  146 (454)
T ss_dssp             CCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-C
T ss_pred             ccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-C
Confidence            998 5665    24799999999999988 4433   489999999999998 45532    3699999999999996 6


Q ss_pred             CcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCC
Q 038273          155 PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC  234 (623)
Q Consensus       155 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  234 (623)
                      | +++++++|++|++++|+++ .+|..    ..+|++|++++|.+.+ .+ .+..+++|+.|++++|.+++ +|..   .
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~  214 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P  214 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred             c-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence            7 5999999999999999998 67753    4699999999999987 34 68999999999999999985 4433   2


Q ss_pred             CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEcc
Q 038273          235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS  314 (623)
Q Consensus       235 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  314 (623)
                      ++|++|++++|.+. .+| .++.+++|++|++++|++.+. |.   .+++|+.|++++|.+.+ +|..  .++|++|+++
T Consensus       215 ~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls  285 (454)
T 1jl5_A          215 LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVS  285 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECC
T ss_pred             CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc--cCcCCEEECc
Confidence            68999999999998 556 489999999999999999853 33   34799999999999985 4443  4899999999


Q ss_pred             CccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcc-ccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcC
Q 038273          315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL-TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG  393 (623)
Q Consensus       315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  393 (623)
                      +|.+.+. +.    ..++|+.|++++|++++. +    .+ ++|+.|++++|++.+ +|..   +++|+.|++++|++++
T Consensus       286 ~N~l~~l-~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~  351 (454)
T 1jl5_A          286 ENIFSGL-SE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE  351 (454)
T ss_dssp             SSCCSEE-SC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCccCcc-cC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence            9998652 21    136899999999999852 2    23 589999999999985 4543   6899999999999874


Q ss_pred             CCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc--cCCccccccccCCeeeCCCCcccccCCccCCC
Q 038273          394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG--EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN  471 (623)
Q Consensus       394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  471 (623)
                       +|.                         .+++|++|++++|++++  .+|..+..      |  +.|.+.+.+|..   
T Consensus       352 -lp~-------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---  394 (454)
T 1jl5_A          352 -VPE-------------------------LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---  394 (454)
T ss_dssp             -CCC-------------------------CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC-----------
T ss_pred             -ccc-------------------------hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---
Confidence             333                         13589999999999997  56665543      2  235566566653   


Q ss_pred             CCCCcEEECCCCcccc--cCccccccCCCCCeeecccCcccccCCCCc
Q 038273          472 LKQVESLDVSYNNLNG--KIPPQLVELNVLAVFSVAHNNLSGKIPEWT  517 (623)
Q Consensus       472 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~  517 (623)
                      +++|+.|++++|++++  .+|.      +++.|.+.+|.+.+..+.+.
T Consensus       395 ~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~  436 (454)
T 1jl5_A          395 PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAH  436 (454)
T ss_dssp             ------------------------------------------------
T ss_pred             cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCH
Confidence            5789999999999986  4453      46777889998887766544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=327.31  Aligned_cols=323  Identities=18%  Similarity=0.178  Sum_probs=221.8

Q ss_pred             CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcC
Q 038273          165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD  244 (623)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  244 (623)
                      +.++.+++.++ .+|..+   .+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45556666665 566543   34666666666666666566666666666666666666666666667777777777777


Q ss_pred             CcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC
Q 038273          245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY  324 (623)
Q Consensus       245 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  324 (623)
                      |+++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+                        
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------  145 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH------------------------  145 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT------------------------
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh------------------------
Confidence            76665555556666777777777776666666666666667777666666553322                        


Q ss_pred             CCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccc
Q 038273          325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSL  404 (623)
Q Consensus       325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  404 (623)
                      ..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..+.++.....   
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---  222 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---  222 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---
T ss_pred             hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---
Confidence            12556677777777777777666666777777777777777777666667777777777777777665544432221   


Q ss_pred             cCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273          405 HNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN  484 (623)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  484 (623)
                                         ..+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|+
T Consensus       223 -------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          223 -------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             -------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred             -------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence                               1267777777777775444567777778888888887777777777777788888888888


Q ss_pred             ccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          485 LNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       485 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +.+..|..+..+++|+.|++++|++++..+..+..+++|+.+++++||+.|+|
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            77777777777778888888888777766666667777777888888887743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-35  Score=311.79  Aligned_cols=190  Identities=21%  Similarity=0.307  Sum_probs=94.9

Q ss_pred             CCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE
Q 038273           63 QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY  142 (623)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  142 (623)
                      +++++.|+++++.++ .+|.  +..+++|++|++++|.+++..+  +.++++|++|++++|.+. .++. + ..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-h-cCCCCCCE
Confidence            455666666666655 4443  3456666666666666555433  555666666666666555 3333 2 22556666


Q ss_pred             EecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccccc
Q 038273          143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY  222 (623)
Q Consensus       143 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  222 (623)
                      |++++|.+++.. . +.++++|++|++++|.+. .++.  +..+++|++|++++ .+.+.  ..+.++++|+.|++++|.
T Consensus       117 L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDID-P-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCG-G-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCCh-H-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence            666666655332 1 556666666666666655 3432  34556666665542 22211  114444444455554444


Q ss_pred             CccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273          223 CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      +++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence            4422  124444455555555554443322  333444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.1e-37  Score=318.01  Aligned_cols=376  Identities=19%  Similarity=0.184  Sum_probs=257.4

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      .++......+...+..+..++++++|++|++++|.++ .+| . +..+++|++|++++|++++.   .+..+++|++|++
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~L   92 (457)
T 3bz5_A           19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLAC   92 (457)
T ss_dssp             HHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred             HHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEEC
Confidence            4444444444444455566777888888888888887 455 2 47788888888888888764   2777888888888


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+++ ++  +. .+++|++|++++|.+++ ++  +.++++|++|++++|+++ .++   +..+++|++|++++|...
T Consensus        93 s~N~l~~-~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A           93 DSNKLTN-LD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             CSSCCSC-CC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCC
T ss_pred             cCCCCce-ee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCcc
Confidence            8888773 44  33 36788888888888775 33  777888888888888877 454   356778888888877543


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                      +..  .+..+++|+.|++++|++++. |  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++.+. |  +.
T Consensus       162 ~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~  230 (457)
T 3bz5_A          162 TKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VT  230 (457)
T ss_dssp             CCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             ccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--cc
Confidence            333  456677777777777777753 3  66777778888877777654   366777777777777777753 3  56


Q ss_pred             CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEE
Q 038273          281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL  360 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  360 (623)
                      .+++|+.|++++|.+.+..  ...+++|+.+++++|               +|+.|++++|...+.+|  +..+++|+.|
T Consensus       231 ~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L  291 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKEL  291 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred             ccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEE
Confidence            6777777777777776432  224455555555443               23445556665554444  3445666666


Q ss_pred             EcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc
Q 038273          361 ILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE  440 (623)
Q Consensus       361 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  440 (623)
                      ++++|...+.+|.   ..++|+.+++++|                                   ++|++|++++|++++.
T Consensus       292 ~Ls~n~~l~~l~~---~~~~L~~L~l~~~-----------------------------------~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          292 DVTHNTQLYLLDC---QAAGITELDLSQN-----------------------------------PKLVYLYLNNTELTEL  333 (457)
T ss_dssp             CCTTCTTCCEEEC---TTCCCSCCCCTTC-----------------------------------TTCCEEECTTCCCSCC
T ss_pred             ECCCCcccceecc---CCCcceEechhhc-----------------------------------ccCCEEECCCCccccc
Confidence            6666665544442   3344555555443                                   3888999999999874


Q ss_pred             CCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCc
Q 038273          441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWT  517 (623)
Q Consensus       441 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~  517 (623)
                       +  +..+++|+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|+.+++++|+++|.+|..+
T Consensus       334 -~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          334 -D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             -C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             -c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence             3  8889999999999999985        35677788999998865     345667888999999999988654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=319.65  Aligned_cols=319  Identities=21%  Similarity=0.194  Sum_probs=189.8

Q ss_pred             EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273          117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE  196 (623)
Q Consensus       117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  196 (623)
                      .++.+++.++ .+|..+.   ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...|.++++|++|++++
T Consensus        15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence            4555555555 5555433   35666666666666555556666666666666666665 44333445566666666666


Q ss_pred             CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273          197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP  276 (623)
Q Consensus       197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  276 (623)
                      |.+....+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            66655544555566666666666666665556666666666666666666666666666666666666666666665555


Q ss_pred             ccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcccc
Q 038273          277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR  356 (623)
Q Consensus       277 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  356 (623)
                      ..+..+++|+.|++++|.+.+..+.                        .|..+++|+.|++++|...+..+.......+
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCcccccCcc
Confidence            5566666666666666665533221                        1444455555555555444444433333446


Q ss_pred             CcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc
Q 038273          357 LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK  436 (623)
Q Consensus       357 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  436 (623)
                      |+.|++++|.+....+..+..+++|+.|++++|++.+..+..+..                      +++|+.|++++|.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~  283 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE----------------------LLRLQEIQLVGGQ  283 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT----------------------CTTCCEEECCSSC
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc----------------------cccCCEEECCCCc
Confidence            666666666666444455666666666666666665444333322                      2255555555555


Q ss_pred             ccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                      +++..|..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            55555666666777777777777777666666677777777777777765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-35  Score=311.60  Aligned_cols=347  Identities=25%  Similarity=0.359  Sum_probs=253.3

Q ss_pred             CCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCE
Q 038273           87 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKF  166 (623)
Q Consensus        87 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  166 (623)
                      .+++++.|++.++.+... + .+..+++|++|++++|.+. .+|. + ..+++|++|++++|.+++..+  +.++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            356888999998888663 3 4777888999999998888 5555 3 347789999998888885444  888888888


Q ss_pred             EEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCc
Q 038273          167 LDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNN  246 (623)
Q Consensus       167 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  246 (623)
                      |++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|+++ +.+.+.  ..+..+++|+.|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            988888887 5655  56788888888888887653  246778888888886 334432  236777888888888887


Q ss_pred             CccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCC
Q 038273          247 LYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT  326 (623)
Q Consensus       247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  326 (623)
                      +.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+ +                         ..
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-------------------------~~  238 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-------------------------GT  238 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-------------------------GG
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-------------------------hh
Confidence            7643  346677777777777777765544  5566777777777766542 1                         12


Q ss_pred             ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273          327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  406 (623)
Q Consensus       327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  406 (623)
                      +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+..+  +.      
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------  306 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------  306 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG------
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc------
Confidence            5566777778888777775544  6777788888888888775433  6777888888888887765433  21      


Q ss_pred             CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                                      .+++|+.|++++|.+++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus       307 ----------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          307 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             ----------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ----------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence                            24578888888888876544  67788888888888888765  46778888888888888888


Q ss_pred             ccCccccccCCCCCeeecccCccccc
Q 038273          487 GKIPPQLVELNVLAVFSVAHNNLSGK  512 (623)
Q Consensus       487 ~~~p~~~~~l~~L~~L~l~~N~l~~~  512 (623)
                      +..|  +..+++|+.|++++|++++.
T Consensus       367 ~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          367 DLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             BCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             ccch--hhcCCCCCEEeccCCcccCC
Confidence            7666  77888888888888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.7e-35  Score=305.04  Aligned_cols=358  Identities=18%  Similarity=0.168  Sum_probs=172.7

Q ss_pred             cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN   88 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l   88 (623)
                      .++++++|++|++++|.+.+. +.   +..+.+|++|++++|++++. |  ++.+++|++|++++|.+++ ++   +.++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~~---l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l  105 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-TG---IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPL  105 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-TT---GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTC
T ss_pred             ChhHcCCCCEEEccCCCcccC-hh---hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCC
Confidence            345555555555555555432 11   11222555555555555442 2  4555555555555555552 33   3455


Q ss_pred             CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEE
Q 038273           89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLD  168 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  168 (623)
                      ++|++|++++|++++. +  +..+++|++|++++|.+++ ++  +. .+++|++|++++|...+.+  .+..+++|++|+
T Consensus       106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            5555555555555442 1  4455555555555555552 32  22 2345555555555322222  244455555555


Q ss_pred             ccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc
Q 038273          169 LSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY  248 (623)
Q Consensus       169 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  248 (623)
                      +++|+++ .+|   +..+++|++|++++|.+++.   .                        ++.+++|+.|++++|+++
T Consensus       177 ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~------------------------l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          177 CSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---D------------------------LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             CCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---C------------------------CTTCTTCSEEECCSSCCS
T ss_pred             CCCCccc-eec---cccCCCCCEEECcCCcCCee---c------------------------cccCCCCCEEECcCCccc
Confidence            5555554 333   23444455555554444432   2                        444455555555555554


Q ss_pred             cccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCcc
Q 038273          249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF  328 (623)
Q Consensus       249 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  328 (623)
                      + +|  +..+++|+.|++++|.+.+..   ...+++|+.|++++|             +|+.+++++|...+.++   +.
T Consensus       226 ~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~---~~  283 (457)
T 3bz5_A          226 E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ---AE  283 (457)
T ss_dssp             C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE---CT
T ss_pred             c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc---cc
Confidence            4 22  444555555555555554332   233445555555443             23344445554444443   33


Q ss_pred             CCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCC
Q 038273          329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG  408 (623)
Q Consensus       329 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~  408 (623)
                      .+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|+.|++++|++++. +  +.        
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~--------  336 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VS--------  336 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CT--------
T ss_pred             ccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cc--------
Confidence            456666666666655444442   2233443333322             4556666666665542 1  11        


Q ss_pred             CCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccccc
Q 038273          409 DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK  488 (623)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  488 (623)
                                    .+++|+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|+.+++++|++++.
T Consensus       337 --------------~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~  389 (457)
T 3bz5_A          337 --------------HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIA  389 (457)
T ss_dssp             --------------TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEE
T ss_pred             --------------cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEE
Confidence                          13356666666666553        13445555666666543     2334455666666666666


Q ss_pred             Ccccc
Q 038273          489 IPPQL  493 (623)
Q Consensus       489 ~p~~~  493 (623)
                      +|..+
T Consensus       390 ip~~~  394 (457)
T 3bz5_A          390 VSPDL  394 (457)
T ss_dssp             CCTTC
T ss_pred             cChhH
Confidence            66543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.6e-35  Score=298.54  Aligned_cols=154  Identities=17%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             CCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEe
Q 038273          138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH  217 (623)
Q Consensus       138 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  217 (623)
                      ++++.|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34555555555444333333444455555555555444 34333334444555555554444444444444444444444


Q ss_pred             cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273          218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI  295 (623)
Q Consensus       218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  295 (623)
                      +++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   .+..+++|+.|++++|.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            444444433333334444444444444444444444444444444444444444432   122334444444444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-33  Score=286.49  Aligned_cols=334  Identities=19%  Similarity=0.200  Sum_probs=231.4

Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY  191 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  191 (623)
                      ++++++|+++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            467778888877777 677776666778888888888888777778888888888888888887 666666677888888


Q ss_pred             EEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccc
Q 038273          192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL  271 (623)
Q Consensus       192 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  271 (623)
                      |++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|+.+++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888888765555567888888888888888877777888889999999999888764   356678899999999887


Q ss_pred             cccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhh
Q 038273          272 QGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI  351 (623)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  351 (623)
                      .+.     ...++|+.|++++|.+.....                           ...++|+.|++++|.+++.  .++
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~~~---------------------------~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVVRG---------------------------PVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEEEC---------------------------CCCSSCCEEECCSSCCCCC--GGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeeccc---------------------------cccccccEEECCCCCCccc--HHH
Confidence            632     344578888888887763211                           1125677888888877753  467


Q ss_pred             hccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEE
Q 038273          352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD  431 (623)
Q Consensus       352 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  431 (623)
                      ..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..                                    
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------------------  288 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN------------------------------------  288 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE------------------------------------
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC------------------------------------
Confidence            78888999999999888777888888888999888888876321                                    


Q ss_pred             ccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273          432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG  511 (623)
Q Consensus       432 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  511 (623)
                                 ..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++.. |  +..+++|+.|++++|++.+
T Consensus       289 -----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          289 -----------LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             -----------CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             -----------cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence                       11223344444455544444 2233344445555555555555432 1  3445555666666665554


Q ss_pred             cCCCCccccCCCCCccccCCCCCCCC
Q 038273          512 KIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       512 ~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      ....  ..+..+....+.+++..|.+
T Consensus       354 ~~~~--~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          354 NSLR--ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             HHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred             hhHH--HHHHHHHhhcccccCceecc
Confidence            3221  12345555667778877743

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-34  Score=307.02  Aligned_cols=332  Identities=17%  Similarity=0.184  Sum_probs=163.9

Q ss_pred             CCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEe
Q 038273          138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH  217 (623)
Q Consensus       138 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  217 (623)
                      ++++.+++++|.+....+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.++++|+.|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45666666666665444444555666666666666665 44444445566666666666666555555555566666666


Q ss_pred             cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCcccee
Q 038273          218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG  297 (623)
Q Consensus       218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  297 (623)
                      +++|.+++..+..|+.+++|++|++++|.+++..|..++.+++|++|++++|.+.+..   +..+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            6666655444444555666666666666665555555555666666666666555432   3344555555555555442


Q ss_pred             eCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcC
Q 038273          298 TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCR  377 (623)
Q Consensus       298 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  377 (623)
                      ..    ..+.|+.|++++|.+..... .   ..++|+.|++++|.+++  +.++..+++|+.|++++|.+.+..|..+..
T Consensus       207 l~----~~~~L~~L~ls~n~l~~~~~-~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 LA----IPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             EE----CCTTCSEEECCSSCCCEEEC-S---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             cc----CCchhheeeccCCccccccc-c---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            11    12334444444444422111 1   01334444444444432  123333444444444444444333333444


Q ss_pred             CCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCC
Q 038273          378 LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFS  457 (623)
Q Consensus       378 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  457 (623)
                      +++|+.|++++|.+                                              ++ +|..+..+++|+.|+|+
T Consensus       277 l~~L~~L~Ls~N~l----------------------------------------------~~-l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          277 MQRLERLYISNNRL----------------------------------------------VA-LNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CSSCCEEECTTSCC----------------------------------------------CE-EECSSSCCTTCCEEECC
T ss_pred             ccCCCEEECCCCCC----------------------------------------------CC-CCcccccCCCCcEEECC
Confidence            44444444444333                                              32 22333344555555555


Q ss_pred             CCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273          458 HNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG  536 (623)
Q Consensus       458 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~  536 (623)
                      +|.++ .+|..+..+++|+.|+|++|++.+..   +..+++|+.|++++|++.+....  ..+..+....+.+++..|+
T Consensus       310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~  382 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCK  382 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCC
T ss_pred             CCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCC
Confidence            55555 33444445555555555555554321   34445555556666555543221  1233344445556666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.3e-32  Score=275.59  Aligned_cols=302  Identities=20%  Similarity=0.276  Sum_probs=174.8

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      +|++|++++|.+.. ++. +..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|++
T Consensus        45 ~L~~L~l~~~~i~~-~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l  117 (347)
T 4fmz_A           45 SITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL  117 (347)
T ss_dssp             TCSEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred             cccEEEEeCCcccc-chh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence            56666666665543 232 555666666666666655 3443  35566666666666655542  23555566666666


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .++.  ...+++|++|++++|..... +..+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.
T Consensus       118 ~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          118 NEDNIS-DISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             TTSCCC-CCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCC
T ss_pred             cCCccc-Cchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccc
Confidence            666555 3333  22245566666665543322 223555555666666555555 3333  344555555555555554


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                      +..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+.
T Consensus       191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~  262 (347)
T 4fmz_A          191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK  262 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred             cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence            3322  4445555555555554443222  4444555555555554443222  44444444555444444432  2334


Q ss_pred             CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEE
Q 038273          281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL  360 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  360 (623)
                      .                       +++|++|++++|.+.+.   ..+..+++|++|++++|++++..+..+..+++|+.|
T Consensus       263 ~-----------------------l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          263 D-----------------------LTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             T-----------------------CTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             c-----------------------CCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            4                       44555555555554332   237788999999999999998888899999999999


Q ss_pred             EcccccccccCchhhcCCCCCCEEEccCCcCc
Q 038273          361 ILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF  392 (623)
Q Consensus       361 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  392 (623)
                      ++++|++.+..|  +..+++|+.|++++|+++
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999986655  888999999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-33  Score=280.11  Aligned_cols=260  Identities=32%  Similarity=0.523  Sum_probs=201.4

Q ss_pred             CCCcEEECcCCcCcc--ccchhccCCCCCCEEECcc-ccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEE
Q 038273          235 SPLEGLYMSDNNLYG--NIPAWLGNLSSLNDIMMAI-NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQV  311 (623)
Q Consensus       235 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  311 (623)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+.+|.          
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----------  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----------  119 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----------
Confidence            356666666666665  5566666666666666663 666666666666666666666666666533332          


Q ss_pred             EccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCC-CCCEEEccCCc
Q 038273          312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLK-QLRLIDLSNNN  390 (623)
Q Consensus       312 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  390 (623)
                                   . +..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|..+..++ +|+.|++++|+
T Consensus       120 -------------~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          120 -------------F-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             -------------G-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             -------------H-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                         1 45566666677777766666777777777788888888877777777777776 78888888888


Q ss_pred             CcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCC
Q 038273          391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS  470 (623)
Q Consensus       391 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  470 (623)
                      +.+..|..+...                       .|+.|++++|.+++..|..+..+++|+.|++++|.+++..|. +.
T Consensus       186 l~~~~~~~~~~l-----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~  241 (313)
T 1ogq_A          186 LTGKIPPTFANL-----------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG  241 (313)
T ss_dssp             EEEECCGGGGGC-----------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred             eeccCChHHhCC-----------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence            777776655432                       378888888888888888999999999999999999876665 88


Q ss_pred             CCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCC
Q 038273          471 NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD  543 (623)
Q Consensus       471 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~  543 (623)
                      .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++.+||++|+.+++.|.
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCCC
Confidence            8999999999999999999999999999999999999999999987 78999999999999999998887773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.1e-32  Score=274.67  Aligned_cols=307  Identities=22%  Similarity=0.360  Sum_probs=198.5

Q ss_pred             ccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCC
Q 038273          157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP  236 (623)
Q Consensus       157 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  236 (623)
                      .+..+++|++|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++..  +.+..+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence            3456788888888888887 6665  4568888888888888876544  77788888888888877743  35777888


Q ss_pred             CcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCc
Q 038273          237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN  316 (623)
Q Consensus       237 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  316 (623)
                      |++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|+.|++++|.+.+.. .               
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~---------------  172 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-P---------------  172 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-G---------------
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch-h---------------
Confidence            8888888887765433  6777778888887775543333 3667777777777777665221 1               


Q ss_pred             cccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCC
Q 038273          317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP  396 (623)
Q Consensus       317 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  396 (623)
                                +..+++|++|++++|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|+.|++++|.+++..+
T Consensus       173 ----------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          173 ----------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             ----------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             ----------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence                      3445556666666665553322  5555666666666666553322  5556666666666665543222


Q ss_pred             CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCc
Q 038273          397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVE  476 (623)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  476 (623)
                        +.                      .+++|++|++++|.+++.  +.+..+++|++|++++|.+++.  ..+..+++|+
T Consensus       239 --~~----------------------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          239 --LA----------------------NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             --GT----------------------TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             --hh----------------------cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence              11                      234666666666666532  3466666777777777776643  3466667777


Q ss_pred             EEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCC
Q 038273          477 SLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPL  533 (623)
Q Consensus       477 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~  533 (623)
                      .|++++|++.+..|..+..+++|++|++++|++++..|  +..+++|+.+++++|+.
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            77777777766666666777777777777777766555  55667777777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-32  Score=294.58  Aligned_cols=311  Identities=21%  Similarity=0.233  Sum_probs=238.3

Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY  191 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  191 (623)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            456677777777766 667666666777888888888777766777778888888888888777 566666677788888


Q ss_pred             EEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccc
Q 038273          192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL  271 (623)
Q Consensus       192 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  271 (623)
                      |++++|.+.+..+..+.++++|+.|++++|.+++..|..|..+++|+.|++++|.+++..   ++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            888888777665556677788888888888887777777888888888888888877542   45567888888888877


Q ss_pred             cccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhh
Q 038273          272 QGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI  351 (623)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  351 (623)
                      .+     +...++|+.|++++|.+....+..  .++|+.|++++|.+.+.   ..+..+++|+.|++++|.+.+..|..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            63     234567888888888887544332  36899999999988663   348889999999999999999889999


Q ss_pred             hccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEE
Q 038273          352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD  431 (623)
Q Consensus       352 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  431 (623)
                      ..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.                                       
T Consensus       275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~---------------------------------------  314 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL---------------------------------------  314 (597)
T ss_dssp             TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC---------------------------------------
T ss_pred             cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC---------------------------------------
Confidence            999999999999999985 4555666777777777777664                                       


Q ss_pred             ccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccccc
Q 038273          432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK  488 (623)
Q Consensus       432 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  488 (623)
                              .+|..+..+++|+.|++++|.+++..   +..+++|+.|++++|++.+.
T Consensus       315 --------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          315 --------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             --------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             --------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence                    44556677888888888888887542   66778888999999988743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=2.8e-30  Score=258.20  Aligned_cols=244  Identities=26%  Similarity=0.325  Sum_probs=170.2

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ++++++++++.+. .+|..+.  +++++|++++|.++ .++...+.++++|++|++++|++++..|..+.++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            7888888888876 4555443  57888888888888 455545678888888888888888877888888888888888


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc-ccchHHhhCCCCCCEEEcccCcC
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSL  199 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l  199 (623)
                      ++|.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+.++++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            888887 6776654   578888888888876666677788888888888887752 13334456677777777777776


Q ss_pred             ccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccc
Q 038273          200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF  279 (623)
Q Consensus       200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  279 (623)
                      ... +..+  .++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|..+
T Consensus       184 ~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             ccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            642 2222  156666666666666655666666666666666666666655556666666666666666665 445555


Q ss_pred             cCCCCCcEEeCcCccce
Q 038273          280 CQLNYLEILDLSENNIS  296 (623)
Q Consensus       280 ~~l~~L~~L~l~~n~~~  296 (623)
                      ..+++|+.|++++|+++
T Consensus       260 ~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             TTCSSCCEEECCSSCCC
T ss_pred             ccCCCcCEEECCCCcCC
Confidence            56666666666666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=9.7e-31  Score=261.66  Aligned_cols=68  Identities=13%  Similarity=0.162  Sum_probs=35.9

Q ss_pred             cCCccccccccCCeeeCCCCcccccCCccCCC------CCCCcEEECCCCccc--ccCccccccCCCCCeeecccC
Q 038273          440 EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN------LKQVESLDVSYNNLN--GKIPPQLVELNVLAVFSVAHN  507 (623)
Q Consensus       440 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~l~~N  507 (623)
                      .+|..+..+++|+.|++++|.+++..+..|..      .++|+.|++++|++.  ...|..+..++.|+.+++++|
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            34444555555555666655555554444433      245566666666655  445555566666666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-34  Score=304.13  Aligned_cols=308  Identities=18%  Similarity=0.124  Sum_probs=161.3

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcC----cCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCC--
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSG----PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFP--  138 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~--  138 (623)
                      +|++||+++|.+++.....++..+++|++|++++|+++.    .++..+..+++|++|++++|.+.+..+..+...++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            455666666655532223334556666666666666542    12334455566666666666665433444444444  


Q ss_pred             --CccEEecccCcccc----cCCcccCCCCCCCEEEccCCcCCcccchHHh----hCCCCCCEEEcccCcCcccc----c
Q 038273          139 --RLVYLNLSRNDFNG----SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV----IGCFNLEYLVLSENSLHGQL----F  204 (623)
Q Consensus       139 --~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~----~  204 (623)
                        +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.    ...++|++|++++|.++...    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              57788888777763    3466777788888888888877633333222    22456777777777776533    3


Q ss_pred             cccccCCCCCEEecccccCccccCccCc-----CCCCCcEEECcCCcCccc----cchhccCCCCCCEEECccccccccc
Q 038273          205 YKKIYLRKLARLHLDANYCTGEIPKSLS-----NCSPLEGLYMSDNNLYGN----IPAWLGNLSSLNDIMMAINHLQGPI  275 (623)
Q Consensus       205 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~  275 (623)
                      ..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+....
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            3444556666666666665543222222     244666666666666542    3444555566666666666554321


Q ss_pred             -----cccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchh
Q 038273          276 -----PLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW  350 (623)
Q Consensus       276 -----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  350 (623)
                           +..+..+++|+.|++++|.++....                   ..++. .+..+++|++|++++|.+++..+..
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHHH
Confidence                 1112234455555555554431100                   00111 1333455555555555554332222


Q ss_pred             hhcc-----ccCcEEEccccccccc----CchhhcCCCCCCEEEccCCcCc
Q 038273          351 IERL-----TRLRYLILANNNLEGE----VPNQLCRLKQLRLIDLSNNNLF  392 (623)
Q Consensus       351 ~~~l-----~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  392 (623)
                      +...     ++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            2221     3555555555555433    2333444555555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.7e-30  Score=257.33  Aligned_cols=289  Identities=20%  Similarity=0.293  Sum_probs=138.5

Q ss_pred             CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEE
Q 038273          114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLV  193 (623)
Q Consensus       114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  193 (623)
                      +++.++++++.+. .+|..+.   ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEE
Confidence            5666666666655 5554432   35666666666665544445555555555555555555 33222234445555555


Q ss_pred             cccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccc
Q 038273          194 LSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG  273 (623)
Q Consensus       194 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  273 (623)
                      +++|.+..                         +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus       107 Ls~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A          107 LSKNQLKE-------------------------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             CCSSCCSB-------------------------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             CCCCcCCc-------------------------cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            55444431                         222111  455555555555554444455555555555555555532


Q ss_pred             --cccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhh
Q 038273          274 --PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI  351 (623)
Q Consensus       274 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  351 (623)
                        ..+..+..+++|+.|++++|.+.. +|.                       . +  .++|++|++++|.+++..+..+
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~-----------------------~-~--~~~L~~L~l~~n~l~~~~~~~~  212 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNITT-IPQ-----------------------G-L--PPSLTELHLDGNKITKVDAASL  212 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCS-CCS-----------------------S-C--CTTCSEEECTTSCCCEECTGGG
T ss_pred             cCcChhhccCCCCcCEEECCCCcccc-CCc-----------------------c-c--cccCCEEECCCCcCCccCHHHh
Confidence              334445555555555555555431 111                       1 0  1334444444444443333344


Q ss_pred             hccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEE
Q 038273          352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD  431 (623)
Q Consensus       352 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  431 (623)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|++                                        
T Consensus       213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l----------------------------------------  252 (330)
T 1xku_A          213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL----------------------------------------  252 (330)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC----------------------------------------
T ss_pred             cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC----------------------------------------
Confidence            4444444444444444433333333344444444443333                                        


Q ss_pred             ccCCcccccCCccccccccCCeeeCCCCcccccCCccCCC------CCCCcEEECCCCcccc--cCccccccCCCCCeee
Q 038273          432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN------LKQVESLDVSYNNLNG--KIPPQLVELNVLAVFS  503 (623)
Q Consensus       432 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~  503 (623)
                            + .+|..+..+++|++|++++|.+++..+..|..      .++++.|++++|.+..  ..|..|..+.+++.++
T Consensus       253 ------~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~  325 (330)
T 1xku_A          253 ------V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  325 (330)
T ss_dssp             ------S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ------c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence                  3 33444455555555555555555444444432      2455666666666542  3445555566666666


Q ss_pred             cccCc
Q 038273          504 VAHNN  508 (623)
Q Consensus       504 l~~N~  508 (623)
                      +++|+
T Consensus       326 L~~N~  330 (330)
T 1xku_A          326 LGNYK  330 (330)
T ss_dssp             C----
T ss_pred             ecccC
Confidence            66553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.8e-34  Score=301.69  Aligned_cols=363  Identities=17%  Similarity=0.138  Sum_probs=211.5

Q ss_pred             CCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccc----cCCcccCCCCCCCEEEccCCcCCcccchHHhhCCC-
Q 038273          113 WHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCF-  187 (623)
Q Consensus       113 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-  187 (623)
                      ++|++|++++|.+++.....++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567777777776633333334446777888887777763    23555667777888888887776444445555555 


Q ss_pred             ---CCCEEEcccCcCcc----ccccccccCCCCCEEecccccCccccCcc-----CcCCCCCcEEECcCCcCcccc----
Q 038273          188 ---NLEYLVLSENSLHG----QLFYKKIYLRKLARLHLDANYCTGEIPKS-----LSNCSPLEGLYMSDNNLYGNI----  251 (623)
Q Consensus       188 ---~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~----  251 (623)
                         +|++|++++|.+..    ..+..+..+++|++|++++|.+++..+..     ....++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               57777777777764    33556667777777777777765432222     223456777777777766533    


Q ss_pred             chhccCCCCCCEEECcccccccccccccc-----CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCC
Q 038273          252 PAWLGNLSSLNDIMMAINHLQGPIPLEFC-----QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT  326 (623)
Q Consensus       252 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  326 (623)
                      +..+..+++|++|++++|.+....+..+.     ..++|+.|++++|.+......                   .++. .
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence            44455667777777777776543333332     245666666666655421000                   0011 1


Q ss_pred             ccCCCceeEEeCCCCcCCCCCc-----hhhhccccCcEEEccccccccc----CchhhcCCCCCCEEEccCCcCcCCCCC
Q 038273          327 FFNRSSIVTLDLSYNSFSGNIP-----YWIERLTRLRYLILANNNLEGE----VPNQLCRLKQLRLIDLSNNNLFGQIPG  397 (623)
Q Consensus       327 ~~~~~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~  397 (623)
                      +..+++|++|++++|.+++...     ..+..+++|+.|++++|.++..    ++..+..+++|++|++++|.+....+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            3344555666666655543221     1112355666666666665532    344455566666666666665432222


Q ss_pred             ccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc----CCccccccccCCeeeCCCCcccccCCccCCC--
Q 038273          398 CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE----IPPQIGKLTSIRALNFSHNNLTGVIPVSFSN--  471 (623)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--  471 (623)
                      .+...-                 ....++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..  
T Consensus       303 ~l~~~l-----------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  365 (461)
T 1z7x_W          303 LLCETL-----------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  365 (461)
T ss_dssp             HHHHHH-----------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             HHHHHh-----------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence            111100                 01123666666666666643    3455566677788888877776544433321  


Q ss_pred             ---CCCCcEEECCCCcccc----cCccccccCCCCCeeecccCccccc
Q 038273          472 ---LKQVESLDVSYNNLNG----KIPPQLVELNVLAVFSVAHNNLSGK  512 (623)
Q Consensus       472 ---l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~  512 (623)
                         .++|++|++++|++++    .+|..+..+++|++|++++|+++..
T Consensus       366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence               5678888888887775    5667777777888888888877653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.4e-31  Score=261.97  Aligned_cols=248  Identities=27%  Similarity=0.418  Sum_probs=128.7

Q ss_pred             cccEEEccCCCCCC--CCCcccCCCCCCcEEEccC-CCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCE
Q 038273           41 QLESVKLSGSGIHA--TFPKFLYNQHDLEYVDFSD-SNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDT  117 (623)
Q Consensus        41 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  117 (623)
                      ++++|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..+ .++++|++|++++|++++..|..+.++++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            45666666666655  5555566666666666663 55555555543 55566666666666555555555555555555


Q ss_pred             EEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCC-CCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273          118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN-SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE  196 (623)
Q Consensus       118 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  196 (623)
                      |++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+ ..+. |++|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcC
Confidence            555555555555554444 45555555555555555555555554 55555555555554444433 2333 55555555


Q ss_pred             CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273          197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP  276 (623)
Q Consensus       197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  276 (623)
                      |.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|.+++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            555444444444455555555555544433332 3444444444444444444444444444444444444444444444


Q ss_pred             ccccCCCCCcEEeCcCcc
Q 038273          277 LEFCQLNYLEILDLSENN  294 (623)
Q Consensus       277 ~~~~~l~~L~~L~l~~n~  294 (623)
                      .. ..+++|+.+++++|+
T Consensus       286 ~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSS
T ss_pred             CC-ccccccChHHhcCCC
Confidence            33 344444444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8.2e-30  Score=254.92  Aligned_cols=243  Identities=25%  Similarity=0.330  Sum_probs=160.9

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ++++++++++.+. .+|..+.  ++|++|++++|.++ .++...+.++++|++|++++|++++..+..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            6788888877775 4455443  57888888888777 444444577788888888888877777777777888888888


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc-ccchHHhhCCCCCCEEEcccCcC
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSL  199 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l  199 (623)
                      ++|.+. .+|..++   ++|++|++++|.++...+..+.++++|++|++++|.++. .+....+..+ +|++|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            888777 6666554   577777777777776555667777777777777777751 1333333444 677777777766


Q ss_pred             ccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccc
Q 038273          200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF  279 (623)
Q Consensus       200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  279 (623)
                      .+ .|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+. .+|..+
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            54 222221  56666666666666555566666666666666666666655556666666666666666665 444455


Q ss_pred             cCCCCCcEEeCcCccce
Q 038273          280 CQLNYLEILDLSENNIS  296 (623)
Q Consensus       280 ~~l~~L~~L~l~~n~~~  296 (623)
                      ..+++|+.|++++|.++
T Consensus       261 ~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             GGCTTCCEEECCSSCCC
T ss_pred             hcCccCCEEECCCCCCC
Confidence            56666666666666555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=6.7e-29  Score=258.25  Aligned_cols=249  Identities=23%  Similarity=0.276  Sum_probs=150.2

Q ss_pred             CEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCc
Q 038273          214 ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN  293 (623)
Q Consensus       214 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  293 (623)
                      +.++..+..++ .+|..+.  ++++.|++++|++.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            34444444444 3333332  45666666666666555555666666666666666655555555555555555555555


Q ss_pred             cceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccc-ccccCc
Q 038273          294 NISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNN-LEGEVP  372 (623)
Q Consensus       294 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~  372 (623)
                      +++                        .++...|..+++|++|++++|.+....+..+..+++|+.|++++|. +....+
T Consensus       123 ~l~------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          123 RLT------------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CCS------------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             cCC------------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            543                        1122224445555555555555554444455555555555555533 332333


Q ss_pred             hhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCC
Q 038273          373 NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIR  452 (623)
Q Consensus       373 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  452 (623)
                      ..+..+++|+.|++++|.++                                               .+| .+..+++|+
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~-----------------------------------------------~~~-~~~~l~~L~  210 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLR-----------------------------------------------EIP-NLTPLIKLD  210 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCS-----------------------------------------------SCC-CCTTCSSCC
T ss_pred             chhhcccccCeecCCCCcCc-----------------------------------------------ccc-ccCCCcccC
Confidence            34555555555555555543                                               222 255666777


Q ss_pred             eeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCC
Q 038273          453 ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNP  532 (623)
Q Consensus       453 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np  532 (623)
                      .|++++|.+++..|..|.++++|+.|+|++|++.+..+..|..+++|+.|++++|++++..+..+..+++|+.+++++||
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777667777777788888888


Q ss_pred             CCCCC
Q 038273          533 LLCGK  537 (623)
Q Consensus       533 ~~C~~  537 (623)
                      |.|+|
T Consensus       291 ~~CdC  295 (440)
T 3zyj_A          291 WNCNC  295 (440)
T ss_dssp             EECSS
T ss_pred             ccCCC
Confidence            88854

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-28  Score=257.01  Aligned_cols=232  Identities=23%  Similarity=0.228  Sum_probs=133.8

Q ss_pred             CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEcc
Q 038273          235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS  314 (623)
Q Consensus       235 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  314 (623)
                      ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.+..                 
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------  137 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-----------------  137 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-----------------
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-----------------
Confidence            345555555555555445555555555555555555554444445555555555555544431                 


Q ss_pred             CccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccc-ccccCchhhcCCCCCCEEEccCCcCcC
Q 038273          315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNN-LEGEVPNQLCRLKQLRLIDLSNNNLFG  393 (623)
Q Consensus       315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~  393 (623)
                             ++...|..+++|++|++++|++....+..+..+++|+.|++++|. +....+..+..+++|+.|++++|++++
T Consensus       138 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          138 -------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             -------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             -------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence                   112224445555555555555554444445555555555555532 332223345555555555555555432


Q ss_pred             CCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCC
Q 038273          394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLK  473 (623)
Q Consensus       394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  473 (623)
                                                                     +| .+..+++|+.|++++|.+++..|..|.+++
T Consensus       211 -----------------------------------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          211 -----------------------------------------------MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS  242 (452)
T ss_dssp             -----------------------------------------------CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred             -----------------------------------------------cc-cccccccccEEECcCCcCcccCcccccCcc
Confidence                                                           12 245566677777777777766667777777


Q ss_pred             CCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273          474 QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  538 (623)
Q Consensus       474 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~  538 (623)
                      +|+.|++++|++.+..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|.
T Consensus       243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            77777777777776666777777777777777777776666666667777777777777777553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=248.83  Aligned_cols=280  Identities=19%  Similarity=0.147  Sum_probs=167.9

Q ss_pred             CCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEE
Q 038273          161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL  240 (623)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  240 (623)
                      |+.....+++++.++ .+|..+   .++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455666667766 666654   3467777777777766555566677777777777777776666677777777777


Q ss_pred             ECcCCcCccccchhccCCCCCCEEECcccccccccc-ccccCCCCCcEEeCcCcc-ceeeCCCCCCCCcccEEEccCccc
Q 038273          241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP-LEFCQLNYLEILDLSENN-ISGTLPSCSSHSTIQQVHLSKNML  318 (623)
Q Consensus       241 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~l  318 (623)
                      ++++|.+++..+..++.+++|++|++++|.+.+... ..+..+++|+.|++++|. +....                   
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------  166 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------------  166 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-------------------
Confidence            777777776555557777777777777777764433 356677777777777763 33222                   


Q ss_pred             cccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCc
Q 038273          319 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC  398 (623)
Q Consensus       319 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  398 (623)
                           ...|..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus       167 -----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          167 -----RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             -----TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             -----HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence                 222555566666666666666555566666666666666666665333333444666666666666665443322


Q ss_pred             cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc----cCCccccccccCCeeeCCCCcccccCCccCCCCCC
Q 038273          399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG----EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQ  474 (623)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  474 (623)
                      +...                   ...+.++.++++++.+.+    .+|..+..+++|+.|++++|.++.+.+..|..+++
T Consensus       242 l~~~-------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~  302 (353)
T 2z80_A          242 LSTG-------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS  302 (353)
T ss_dssp             ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cccc-------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCC
Confidence            2110                   112345555555555443    24455566666666666666666443334566666


Q ss_pred             CcEEECCCCcccc
Q 038273          475 VESLDVSYNNLNG  487 (623)
Q Consensus       475 L~~L~Ls~n~l~~  487 (623)
                      |++|++++|++.+
T Consensus       303 L~~L~L~~N~~~~  315 (353)
T 2z80_A          303 LQKIWLHTNPWDC  315 (353)
T ss_dssp             CCEEECCSSCBCC
T ss_pred             CCEEEeeCCCccC
Confidence            6666666666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-30  Score=281.93  Aligned_cols=380  Identities=12%  Similarity=0.025  Sum_probs=193.4

Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhcCCC-ccEEecccCc-ccc-cCCcccCCCCCCCEEEccCCcCCcccc---hHHhhC
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVYFPR-LVYLNLSRND-FNG-SIPSSIGDMNSLKFLDLSHNQLTGEIP---EHLVIG  185 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~  185 (623)
                      +++|++|++++|.+.+..+..+...+++ |++|++++|. ++. ..+....++++|++|++++|.+++.-.   ..+...
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            4445555555444443333333332223 5555554443 110 011112244455555555554432211   112234


Q ss_pred             CCCCCEEEcccCcCcc----ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc---cccchhccCC
Q 038273          186 CFNLEYLVLSENSLHG----QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY---GNIPAWLGNL  258 (623)
Q Consensus       186 l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l  258 (623)
                      +++|++|++++|.+.+    ..+..+.++++|+.|++++|.+.+ .+..+..+++|+.|+++.....   ...+..+..+
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            4555555555554431    222223344555555555544442 2334444455555555432111   1122334444


Q ss_pred             CCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCC--CCCCCcccEEEccCccccccCCCCCccCCCceeEE
Q 038273          259 SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL  336 (623)
Q Consensus       259 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  336 (623)
                      ++|+.++++++... ..+..+..+++|+.|++++|.+......  ...+++|+.|++++ .+...........+++|++|
T Consensus       270 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          270 RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence            55555555443221 3333444455555555555543221110  12345555555552 22111111113456778888


Q ss_pred             eCCC-----------CcCCCCC-chhhhccccCcEEEcccccccccCchhhcC-CCCCCEEEcc----CCcCcCCCCC-c
Q 038273          337 DLSY-----------NSFSGNI-PYWIERLTRLRYLILANNNLEGEVPNQLCR-LKQLRLIDLS----NNNLFGQIPG-C  398 (623)
Q Consensus       337 ~L~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~-~  398 (623)
                      ++++           +.+++.. +.....+++|+.|+++.+.+++..+..+.. +++|+.|+++    .|.+++...+ .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            8873           4454322 223455788888888877777665555554 7888888886    4444432110 0


Q ss_pred             cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc--ccccCCcccc-ccccCCeeeCCCCccccc-CCccCCCCCC
Q 038273          399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK--LTGEIPPQIG-KLTSIRALNFSHNNLTGV-IPVSFSNLKQ  474 (623)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  474 (623)
                      +..                  ....+++|+.|++++|.  +++..+..+. .+++|++|++++|.+++. .+..+.++++
T Consensus       428 ~~~------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  489 (592)
T 3ogk_B          428 VRS------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN  489 (592)
T ss_dssp             HHH------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred             HHH------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence            000                  00124588888887543  5544444443 378899999999988753 3445678899


Q ss_pred             CcEEECCCCccccc-CccccccCCCCCeeecccCccccc
Q 038273          475 VESLDVSYNNLNGK-IPPQLVELNVLAVFSVAHNNLSGK  512 (623)
Q Consensus       475 L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~  512 (623)
                      |++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus       490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            99999999997644 344456789999999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-28  Score=248.57  Aligned_cols=281  Identities=17%  Similarity=0.138  Sum_probs=158.5

Q ss_pred             CCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEE
Q 038273          186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM  265 (623)
Q Consensus       186 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  265 (623)
                      |+.....+.+++.++.. |..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            44444556666655532 33222  3566666666666655555566666666666666666655555566666666666


Q ss_pred             CccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC-CCccCCCceeEEeCCCC-cC
Q 038273          266 MAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY-GTFFNRSSIVTLDLSYN-SF  343 (623)
Q Consensus       266 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~L~~n-~l  343 (623)
                      +++|.+.+..+..+..+++|++|++++|++.                        .++. ..+..+++|++|++++| .+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK------------------------TLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS------------------------SSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCc------------------------ccCchhhhccCCCCcEEECCCCccc
Confidence            6666666544444555666666666555543                        1222 23666677777777777 35


Q ss_pred             CCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCC
Q 038273          344 SGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKP  423 (623)
Q Consensus       344 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  423 (623)
                      .+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..                      
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------  220 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV----------------------  220 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH----------------------
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh----------------------
Confidence            5455556667777777777777776666666777777777777766654221111111                      


Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccc----cCccccccCCCC
Q 038273          424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG----KIPPQLVELNVL  499 (623)
Q Consensus       424 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L  499 (623)
                      +++|+.|++++|.+++..+..+..                     ....+.++.++++++.+.+    .+|+.+..+++|
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L  279 (353)
T 2z80_A          221 TSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL  279 (353)
T ss_dssp             TTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred             cccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence            235555555555554333222111                     1123445555565555553    345566666677


Q ss_pred             CeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273          500 AVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG  536 (623)
Q Consensus       500 ~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~  536 (623)
                      ++|++++|+++...+..+..+++|+.+++++||+.|+
T Consensus       280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            7777777776643333345666777777777777773

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.8e-30  Score=281.60  Aligned_cols=159  Identities=11%  Similarity=0.006  Sum_probs=100.8

Q ss_pred             cCCCceeEEeCCCCcCCCCCchhhhc-cccCcEEEcc----ccccccc-----CchhhcCCCCCCEEEccCCc--CcCCC
Q 038273          328 FNRSSIVTLDLSYNSFSGNIPYWIER-LTRLRYLILA----NNNLEGE-----VPNQLCRLKQLRLIDLSNNN--LFGQI  395 (623)
Q Consensus       328 ~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~  395 (623)
                      ..+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     .+..+..+++|+.|++++|.  +++..
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            34677888888777777655555554 7788888886    4555542     23345667888888886543  33222


Q ss_pred             CCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc-CCccccccccCCeeeCCCCccccc-CCccCCCCC
Q 038273          396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE-IPPQIGKLTSIRALNFSHNNLTGV-IPVSFSNLK  473 (623)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  473 (623)
                      +..+.                     ..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. .+.....++
T Consensus       455 ~~~~~---------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          455 LSYIG---------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             HHHHH---------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             HHHHH---------------------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            21111                     1245788888888887752 344456778888888888887643 333445678


Q ss_pred             CCcEEECCCCcccccCcccc-ccCCCCCeeecccC
Q 038273          474 QVESLDVSYNNLNGKIPPQL-VELNVLAVFSVAHN  507 (623)
Q Consensus       474 ~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N  507 (623)
                      +|++|++++|+++......+ ..++.+....+..+
T Consensus       514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            88889998888775432222 34566666555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1e-27  Score=236.90  Aligned_cols=249  Identities=22%  Similarity=0.276  Sum_probs=130.7

Q ss_pred             CEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc--cchhccCCCCCCEEECc
Q 038273          190 EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN--IPAWLGNLSSLNDIMMA  267 (623)
Q Consensus       190 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~  267 (623)
                      +.++.+++.++.. |..+  .++|+.|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3455555555432 2222  24566666666666544444455666666666666655422  23444455555555555


Q ss_pred             cccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCC
Q 038273          268 INHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  347 (623)
Q Consensus       268 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  347 (623)
                      +|.+.. .+..+..+++|+.|++++|.+.                       +..+...+..+++|++|++++|.+.+..
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLK-----------------------QMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEE-----------------------SSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCccc-----------------------ccccchhhhhccCCCEEECCCCcCCccc
Confidence            555552 3334455555555555555443                       2212123555666666666666666555


Q ss_pred             chhhhccccCcEEEcccccccc-cCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCC
Q 038273          348 PYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNK  426 (623)
Q Consensus       348 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  426 (623)
                      +..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|++.+..                               
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------------------------  191 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-------------------------------  191 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-------------------------------
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC-------------------------------
Confidence            5556666666666666666654 34555556666666666666555433                               


Q ss_pred             ccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCC-CCCeeecc
Q 038273          427 MYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN-VLAVFSVA  505 (623)
Q Consensus       427 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~  505 (623)
                                     |..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+..++ +|++|+++
T Consensus       192 ---------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          192 ---------------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             ---------------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             ---------------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence                           34444444555555555555544444445555555555555555544444444442 45555555


Q ss_pred             cCcccc
Q 038273          506 HNNLSG  511 (623)
Q Consensus       506 ~N~l~~  511 (623)
                      +|++++
T Consensus       257 ~N~~~~  262 (306)
T 2z66_A          257 QNDFAC  262 (306)
T ss_dssp             TCCEEC
T ss_pred             CCCeec
Confidence            555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.4e-27  Score=234.27  Aligned_cols=281  Identities=22%  Similarity=0.223  Sum_probs=185.3

Q ss_pred             cEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC--CCChhhhhcCCCccEEe
Q 038273           67 EYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG--NIPLEIGVYFPRLVYLN  144 (623)
Q Consensus        67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~  144 (623)
                      +.++.+++.++ .+|..+   .++|++|++++|+++...+..+.++++|++|++++|.+..  .+|..+.. +++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence            35555555555 555432   2466666666666665444456666666666666666651  12444444 67888888


Q ss_pred             cccCcccccCCcccCCCCCCCEEEccCCcCCcccch-HHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccC
Q 038273          145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE-HLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYC  223 (623)
Q Consensus       145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  223 (623)
                      +++|.++ .+|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            8888777 45666778888888888888877 4543 4556778888888888887777777777778888888888877


Q ss_pred             cc-ccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCC
Q 038273          224 TG-EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC  302 (623)
Q Consensus       224 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  302 (623)
                      ++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. 
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-  241 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-  241 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH-
Confidence            65 5677778888888888888888777777788888888888888888766666677777777777777777643332 


Q ss_pred             CCCCcccEEEccCccccccCCCCCccCC-CceeEEeCCCCcCCCCCc--hhhhccccCcEEEcccccccccCchhhcCC
Q 038273          303 SSHSTIQQVHLSKNMLYGPLKYGTFFNR-SSIVTLDLSYNSFSGNIP--YWIERLTRLRYLILANNNLEGEVPNQLCRL  378 (623)
Q Consensus       303 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  378 (623)
                                            . +..+ ++|++|++++|++.+.-.  .....+...+.+.+..+.+....|..+.+.
T Consensus       242 ----------------------~-~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          242 ----------------------E-LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             ----------------------S-CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             ----------------------H-HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence                                  1 3344 366777777776654321  112223334444555555655555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-26  Score=242.21  Aligned_cols=248  Identities=23%  Similarity=0.236  Sum_probs=155.1

Q ss_pred             ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273           42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS  121 (623)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (623)
                      .+.++.++.+++ .+|..+.  +++++|++++|.+++ ++...|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            455666666554 3444332  466777777776663 333334666677777777776666666666667777777777


Q ss_pred             CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273          122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      +|.++ .+|...+..+++|++|++++|.++...+..|.++++|++|++++|...+.++...+.++++|++|++++|.+.+
T Consensus       132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            77666 55555444466677777777766655555666677777777766433336666656666667777776666654


Q ss_pred             ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273          202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ  281 (623)
Q Consensus       202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  281 (623)
                      .  ..+..+++|+.|++++|.+++..|..|.++++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..+..
T Consensus       211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            3  23555666666666666666665666666666666666666666666666666666666666666666555555666


Q ss_pred             CCCCcEEeCcCccce
Q 038273          282 LNYLEILDLSENNIS  296 (623)
Q Consensus       282 l~~L~~L~l~~n~~~  296 (623)
                      +++|+.|++++|.+.
T Consensus       289 l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          289 LRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEccCCCcC
Confidence            666666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=240.55  Aligned_cols=248  Identities=23%  Similarity=0.206  Sum_probs=141.1

Q ss_pred             ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273           42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS  121 (623)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (623)
                      .+.++.++.++. .+|..+.  +++++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            445555555554 3343332  45666666666665 3333334566666666666666655555556666666666666


Q ss_pred             CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273          122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      +|.++ .+|...+..+++|++|++++|.++...+..|.++++|++|++++|...+.++...|.++++|++|++++|.+..
T Consensus       121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            66665 44444444455666666666666655555566666666666665433335555555556666666666665553


Q ss_pred             ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273          202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ  281 (623)
Q Consensus       202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  281 (623)
                      .  ..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..
T Consensus       200 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 I--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             C--CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             c--cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            2  13455556666666666666555555666666666666666666555555666666666666666665555555555


Q ss_pred             CCCCcEEeCcCccce
Q 038273          282 LNYLEILDLSENNIS  296 (623)
Q Consensus       282 l~~L~~L~l~~n~~~  296 (623)
                      +++|+.|++++|.+.
T Consensus       278 l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          278 LHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEcCCCCcc
Confidence            566666666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.2e-27  Score=230.74  Aligned_cols=224  Identities=21%  Similarity=0.199  Sum_probs=134.7

Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273           43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK  122 (623)
Q Consensus        43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  122 (623)
                      ++++.+++.+. .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56677766665 334332  356777777777776 45544456777777777777777766666777777777777777


Q ss_pred             CC-CCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273          123 NF-FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       123 n~-l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      |. +. .++...+..+++|++|++++|.+++..+..+.++++|++|++++|+++ .++...+..+++|++|++++|.+.+
T Consensus        90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccc
Confidence            75 54 443333333566777777777766655666666666777777666666 5555545556666666666666654


Q ss_pred             ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273          202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      ..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            44444555555555555555555554555555555555555555555444444555555555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=7.4e-27  Score=232.18  Aligned_cols=232  Identities=19%  Similarity=0.212  Sum_probs=132.7

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ++++|++++|++. .+|..+.++++|++|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+.++++|++|++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            4555555555554 34444445555555555555555 444433 44555555555555554 23444455555555555


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+.+.+|..+...                ..+..+.++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.
T Consensus       158 ~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          158 RACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCC
T ss_pred             CCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCC
Confidence            5544444444433210                00011223666666666666666 566553 45666666666666665


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                      + .+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            3 334566666666666666666666666666677777777777666666666677777777777777766666677777


Q ss_pred             CCCCCcEEeCcCccc
Q 038273          281 QLNYLEILDLSENNI  295 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~  295 (623)
                      .+++|+.+++..+.+
T Consensus       299 ~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          299 QLPANCIILVPPHLQ  313 (328)
T ss_dssp             GSCTTCEEECCGGGS
T ss_pred             hccCceEEeCCHHHH
Confidence            777777777665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.3e-26  Score=228.57  Aligned_cols=224  Identities=23%  Similarity=0.277  Sum_probs=165.9

Q ss_pred             CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEE
Q 038273           89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLD  168 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  168 (623)
                      .+++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+.++++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            44444444444444 23333444445555555555544 44444433 345555555555554 3444555555555555


Q ss_pred             ccCCcCCcccchHH--------hhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEE
Q 038273          169 LSHNQLTGEIPEHL--------VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL  240 (623)
Q Consensus       169 l~~n~l~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  240 (623)
                      +++|.+.+.+|..+        +.++++|++|++++|.++ ..|..+..+++|+.|++++|.+++ +|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence            55544444444433        346999999999999998 677889999999999999999995 66679999999999


Q ss_pred             ECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccc
Q 038273          241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNML  318 (623)
Q Consensus       241 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l  318 (623)
                      ++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|... .+++++.+++..+.+
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888766 689999999887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.1e-26  Score=226.94  Aligned_cols=225  Identities=25%  Similarity=0.220  Sum_probs=149.6

Q ss_pred             CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273          116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS  195 (623)
Q Consensus       116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  195 (623)
                      ++++.+++.+. .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            45666666666 566544   247777777777777666666777777777777777776 5544445667777777777


Q ss_pred             cCc-CccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc
Q 038273          196 ENS-LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP  274 (623)
Q Consensus       196 ~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  274 (623)
                      +|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+.+.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            775 5555566666667777777777776666666667777777777777777665555566667777777777766655


Q ss_pred             ccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcc
Q 038273          275 IPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL  354 (623)
Q Consensus       275 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  354 (623)
                      .+..+..+++|+.|++++|.+.+..+.                        .+..+++|+.|++++|.+++..+..+..+
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  224 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPH------------------------AFRDLGRLMTLYLFANNLSALPTEALAPL  224 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTT------------------------TTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             CHHHhcCccccCEEECCCCcccccCHh------------------------HccCcccccEeeCCCCcCCcCCHHHcccC
Confidence            555566666666666666666533222                        25556677777777777776555667777


Q ss_pred             ccCcEEEcccccccc
Q 038273          355 TRLRYLILANNNLEG  369 (623)
Q Consensus       355 ~~L~~L~L~~n~l~~  369 (623)
                      ++|+.|++++|++..
T Consensus       225 ~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          225 RALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cccCEEeccCCCccC
Confidence            777777777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-27  Score=236.82  Aligned_cols=262  Identities=18%  Similarity=0.192  Sum_probs=173.7

Q ss_pred             ecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273          217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       217 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      +++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence            333333333333333444555555555555555555555555555555555555554332  555566666666666555


Q ss_pred             eeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhh-
Q 038273          297 GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL-  375 (623)
Q Consensus       297 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-  375 (623)
                      +..+    .++|++|++++|.+.+..+    ..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+ 
T Consensus        94 ~l~~----~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           94 ELLV----GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEEE----CTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cccC----CCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            3321    2556666666666544322    225678888888888887777778888889999999988887666665 


Q ss_pred             cCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeee
Q 038273          376 CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALN  455 (623)
Q Consensus       376 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  455 (623)
                      ..+++|++|++++|.+++..+..                        .+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus       166 ~~l~~L~~L~L~~N~l~~~~~~~------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDVKGQV------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS  220 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEEECCC------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred             hccCcCCEEECCCCcCccccccc------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence            46888999999988886542111                        14578888888888884 444588888888888


Q ss_pred             CCCCcccccCCccCCCCCCCcEEECCCCccc-ccCccccccCCCCCeeecccC-cccccCC
Q 038273          456 FSHNNLTGVIPVSFSNLKQVESLDVSYNNLN-GKIPPQLVELNVLAVFSVAHN-NLSGKIP  514 (623)
Q Consensus       456 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~~  514 (623)
                      +++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++++ .+++..|
T Consensus       221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            8888888 45667888888888888888888 677778888888888888854 4555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=6.3e-30  Score=277.57  Aligned_cols=233  Identities=20%  Similarity=0.165  Sum_probs=125.1

Q ss_pred             ccCCCCCCcEEEccCCCCCCcC---C-----------hHHhhCCCCCCEEEccCCcCcCcCCCCCC-CCCCCCEEEccCC
Q 038273           59 FLYNQHDLEYVDFSDSNLKGEF---P-----------NWLLENNTNLNTLVLRNNSLSGPFRMPIQ-PHWHLDTLHVSKN  123 (623)
Q Consensus        59 ~~~~~~~L~~L~ls~n~l~~~~---~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n  123 (623)
                      .+.++++|++|+++++.....+   |           ..+...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            3445566666666665421111   1           12234566777777777766544333333 4667777777766


Q ss_pred             -CCCCCCChhhhhcCCCccEEecccCcccccCCccc----CCCCCCCEEEccCCc--CCcccchHHhhCCCCCCEEEccc
Q 038273          124 -FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI----GDMNSLKFLDLSHNQ--LTGEIPEHLVIGCFNLEYLVLSE  196 (623)
Q Consensus       124 -~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~  196 (623)
                       .+.+.....+...+++|++|++++|.+++..+..+    ..+++|++|++++|.  +.......+...+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             33322122333336677777777777654333322    356677777777775  22111222334467777777777


Q ss_pred             CcCccccccccccCCCCCEEeccccc-------CccccCccCcCCCCCcEE-ECcCCcCccccchhccCCCCCCEEECcc
Q 038273          197 NSLHGQLFYKKIYLRKLARLHLDANY-------CTGEIPKSLSNCSPLEGL-YMSDNNLYGNIPAWLGNLSSLNDIMMAI  268 (623)
Q Consensus       197 n~l~~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~  268 (623)
                      |...+..+..+..+++|+.|+++.+.       +.+ .+..+.++++|+.+ .+.+... +.++..+..+++|++|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            63222355556667777777754432       222 22345666777776 3332221 23344444566777777777


Q ss_pred             ccccccc-cccccCCCCCcEEeCcCc
Q 038273          269 NHLQGPI-PLEFCQLNYLEILDLSEN  293 (623)
Q Consensus       269 n~~~~~~-~~~~~~l~~L~~L~l~~n  293 (623)
                      |.+.... ...+..+++|+.|++++|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            7654322 222446667777777666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=8.6e-28  Score=238.27  Aligned_cols=267  Identities=19%  Similarity=0.171  Sum_probs=213.0

Q ss_pred             CCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccC
Q 038273          236 PLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK  315 (623)
Q Consensus       236 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  315 (623)
                      .++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ...+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            34556777777766666667778899999999999998888899999999999999999986655 56788999999999


Q ss_pred             ccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCC
Q 038273          316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI  395 (623)
Q Consensus       316 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  395 (623)
                      |.+.+      +...++|++|++++|.+++..+.   .+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..
T Consensus        90 n~l~~------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           90 NYVQE------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SEEEE------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             Ccccc------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            98854      22348899999999998865543   3678999999999998777778888999999999999988765


Q ss_pred             CCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCC
Q 038273          396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQV  475 (623)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  475 (623)
                      +..+..                     .+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|
T Consensus       161 ~~~~~~---------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L  216 (317)
T 3o53_A          161 FAELAA---------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV  216 (317)
T ss_dssp             GGGGGG---------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred             HHHHhh---------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence            544321                     235899999999998855 2 234588999999999999855 4458888999


Q ss_pred             cEEECCCCcccccCccccccCCCCCeeecccCccc-ccCCCCccccCCCCCccccCCCCCCCC
Q 038273          476 ESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS-GKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       476 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +.|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++..++.++.+++.+|+...+.
T Consensus       217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            99999999998 46777888899999999999988 667777777888888888855544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=242.70  Aligned_cols=236  Identities=19%  Similarity=0.192  Sum_probs=141.9

Q ss_pred             CCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEc
Q 038273          234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL  313 (623)
Q Consensus       234 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  313 (623)
                      +++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+.    ++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence            3356666666666655555556666666666666666554433  55666666666666665533221    45666666


Q ss_pred             cCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhc-CCCCCCEEEccCCcCc
Q 038273          314 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC-RLKQLRLIDLSNNNLF  392 (623)
Q Consensus       314 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~  392 (623)
                      ++|.+.+..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus       107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            66655443222    246788888888888877777777788888888888888776666665 6788888888888776


Q ss_pred             CCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCC
Q 038273          393 GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNL  472 (623)
Q Consensus       393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  472 (623)
                      +..+..                        .+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+
T Consensus       183 ~~~~~~------------------------~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l  236 (487)
T 3oja_A          183 DVKGQV------------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFS  236 (487)
T ss_dssp             EEECCC------------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred             cccccc------------------------cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccC
Confidence            442111                        134566666666666643 3335556666666666666663 34455556


Q ss_pred             CCCcEEECCCCccc-ccCccccccCCCCCeeecc
Q 038273          473 KQVESLDVSYNNLN-GKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       473 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~  505 (623)
                      ++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            66666666666655 4444444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.5e-24  Score=230.07  Aligned_cols=267  Identities=24%  Similarity=0.277  Sum_probs=144.2

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ++++|++++|+++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|++++. |.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence            4566666666665 4444443  56666666666665 4554    355666666666666542 22   4556666666


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.++ .+|.    .+++|+.|++++|+++. +|..   +++|++|++++|.++ .+|.    .+.+|+.|++++|.++
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence            666665 4444    24566666666666653 3332   356666666666665 4442    2445666666666555


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC  280 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  280 (623)
                      .. +   ..+++|+.|++++|.+++ +|.   ..++|+.|++++|.++. +|.   .+++|+.|++++|.+++ +|   .
T Consensus       175 ~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          175 SL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             CC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred             CC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C
Confidence            42 2   234555555555555553 222   12455555555555542 221   12445555555555543 22   2


Q ss_pred             CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEE
Q 038273          281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL  360 (623)
Q Consensus       281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  360 (623)
                      .+++|+.|++++|.+.                        .++.    .+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus       239 ~l~~L~~L~Ls~N~L~------------------------~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          239 LPSELKELMVSGNRLT------------------------SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             CCTTCCEEECCSSCCS------------------------CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCcCcEEECCCCCCC------------------------cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            3344555555554443                        2222    3456666777777666 456666667777777


Q ss_pred             EcccccccccCchhhcCC
Q 038273          361 ILANNNLEGEVPNQLCRL  378 (623)
Q Consensus       361 ~L~~n~l~~~~~~~~~~l  378 (623)
                      ++++|++.+..+..+..+
T Consensus       290 ~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          290 NLEGNPLSERTLQALREI  307 (622)
T ss_dssp             ECCSCCCCHHHHHHHHHH
T ss_pred             EecCCCCCCcCHHHHHhc
Confidence            777777766655555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.1e-28  Score=267.71  Aligned_cols=444  Identities=14%  Similarity=0.046  Sum_probs=212.5

Q ss_pred             ccCCCCCcEEECcCCccccccccc-cCC------------CCCCcccEEEccCCCCCCCCCcccC-CCCCCcEEEccCC-
Q 038273           10 FFNNSKLKVFSGECNEIFVESESS-HSM------------TPKFQLESVKLSGSGIHATFPKFLY-NQHDLEYVDFSDS-   74 (623)
Q Consensus        10 l~~l~~L~~L~ls~~~~~~~~~~~-~~~------------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ls~n-   74 (623)
                      +.++++|++|+++++....+.... ..|            ..+.+|++|++++|.+++..+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            455677778887776532211100 000            0112566666666655544333333 4566666666655 


Q ss_pred             CCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCC----CCCCCCCCEEEccCCC--CCCCCChhhhhcCCCccEEecccC
Q 038273           75 NLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMP----IQPHWHLDTLHVSKNF--FQGNIPLEIGVYFPRLVYLNLSRN  148 (623)
Q Consensus        75 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~--l~~~~p~~~~~~l~~L~~L~L~~n  148 (623)
                      .+++.....+..++++|++|++++|.+++..+..    ...+++|++|++++|.  +.......+...+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            3331112223345666666666666554322221    2244556666665554  111111111122455555555555


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEE-ecccccCcccc
Q 038273          149 DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARL-HLDANYCTGEI  227 (623)
Q Consensus       149 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L-~l~~n~~~~~~  227 (623)
                      ...+.++..+.++++|+.|++..+...                  +..+.+.+ .+..+.++++|+.+ .+..... ..+
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l  281 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAE------------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYL  281 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCC------------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGG
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCc------------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hhH
Confidence            211124444445555555553332110                  00001111 11233444455544 2222111 122


Q ss_pred             CccCcCCCCCcEEECcCCcCccccc-hhccCCCCCCEEECcccccccc-ccccccCCCCCcEEeCcCccceeeCCCCCCC
Q 038273          228 PKSLSNCSPLEGLYMSDNNLYGNIP-AWLGNLSSLNDIMMAINHLQGP-IPLEFCQLNYLEILDLSENNISGTLPSCSSH  305 (623)
Q Consensus       228 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  305 (623)
                      +..+..+++|++|++++|.+++... ..+..+++|++|++++| +... .+.....+++|+.|+++++.-.+        
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g--------  352 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV--------  352 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC--------
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc--------
Confidence            2333345666666666666543222 22445666677766666 3211 12222346677777764432100        


Q ss_pred             CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhh-ccccCcEEEcc--c----cccccc-----Cch
Q 038273          306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLTRLRYLILA--N----NNLEGE-----VPN  373 (623)
Q Consensus       306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~  373 (623)
                            ....+.+++.........+++|+.|++..+.+++.....+. .+++|+.|+++  +    +.++..     .+.
T Consensus       353 ------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~  426 (594)
T 2p1m_B          353 ------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA  426 (594)
T ss_dssp             ------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred             ------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence                  00000010000000012356666666666666544444443 46677777777  2    334311     122


Q ss_pred             hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc-cccccCC
Q 038273          374 QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIR  452 (623)
Q Consensus       374 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~  452 (623)
                      .+..+++|+.|++++ .++...+..+..                     .+++|+.|++++|.+++..+..+ ..+++|+
T Consensus       427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~---------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~  484 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSG-LLTDKVFEYIGT---------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR  484 (594)
T ss_dssp             HHHHCTTCCEEECCS-SCCHHHHHHHHH---------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCC
T ss_pred             HHhhCCCccEEeecC-cccHHHHHHHHH---------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcC
Confidence            245667777777765 443222221111                     13477778888877765544444 5678899


Q ss_pred             eeeCCCCcccccCCc-cCCCCCCCcEEECCCCcccccCcccc-ccCCCCCeeecccCccc
Q 038273          453 ALNFSHNNLTGVIPV-SFSNLKQVESLDVSYNNLNGKIPPQL-VELNVLAVFSVAHNNLS  510 (623)
Q Consensus       453 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~  510 (623)
                      .|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-.
T Consensus       485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            999998888644333 34557889999999998854333333 45677777666666443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.2e-26  Score=229.44  Aligned_cols=244  Identities=23%  Similarity=0.199  Sum_probs=134.1

Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCccc-ccCCcccC-------CCCCCCEEEccCCcCCcccchHHh
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN-GSIPSSIG-------DMNSLKFLDLSHNQLTGEIPEHLV  183 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~  183 (623)
                      .++|++|++++|.+  .+|..+..   .|+.|++++|.++ ..+|..+.       ++++|++|++++|++++.+|..++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34556666666666  55665554   2666666666663 23344333       566666666666666655555543


Q ss_pred             -hCCCCCCEEEcccCcCccccccccccC-----CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc--cchhc
Q 038273          184 -IGCFNLEYLVLSENSLHGQLFYKKIYL-----RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN--IPAWL  255 (623)
Q Consensus       184 -~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l  255 (623)
                       ..+++|++|++++|.+.+. |..+..+     ++|++|++++|++++..+..++.+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             5566666666666666655 5555544     6677777777777666666677777777777777766543  22233


Q ss_pred             --cCCCCCCEEECccccccc---cccccccCCCCCcEEeCcCccceeeCC--CCCCCCcccEEEccCccccccCCCCCcc
Q 038273          256 --GNLSSLNDIMMAINHLQG---PIPLEFCQLNYLEILDLSENNISGTLP--SCSSHSTIQQVHLSKNMLYGPLKYGTFF  328 (623)
Q Consensus       256 --~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~  328 (623)
                        ..+++|++|++++|.+.+   .....+..+++|+.|++++|.+.+..+  ....+++|++|++++|.++ .++.. +.
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG-LP  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS-CC
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh-cc
Confidence              666777777777777662   122334466677777777776664332  1112334444444444442 23322 11


Q ss_pred             CCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccc
Q 038273          329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL  367 (623)
Q Consensus       329 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  367 (623)
                        ++|++|++++|++++. |. +..+++|++|++++|++
T Consensus       274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred             --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence              3444444444444432 22 33444444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.4e-26  Score=229.02  Aligned_cols=246  Identities=19%  Similarity=0.144  Sum_probs=185.4

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCC-CcCChHHh------hCCCCCCEEEccCCcCcCcCCCCC--CC
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLK-GEFPNWLL------ENNTNLNTLVLRNNSLSGPFRMPI--QP  111 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~--~~  111 (623)
                      +|++|++++|.+  .+|..+...  |++|++++|.++ ..+|....      .++++|++|++++|++++..|..+  ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            688889999988  567655544  888999998884 35666542      168999999999999998888776  88


Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhc----CCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCccc--chH-Hhh
Q 038273          112 HWHLDTLHVSKNFFQGNIPLEIGVY----FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEI--PEH-LVI  184 (623)
Q Consensus       112 l~~L~~L~l~~n~l~~~~p~~~~~~----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~~~  184 (623)
                      +++|++|++++|.+.+. |..+...    .++|++|++++|++++..+..++++++|++|++++|++.+.+  +.. .+.
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            99999999999999854 7666653    279999999999999888789999999999999999877442  222 236


Q ss_pred             CCCCCCEEEcccCcCccc---cccccccCCCCCEEecccccCccccC-ccCcCCCCCcEEECcCCcCccccchhccCCCC
Q 038273          185 GCFNLEYLVLSENSLHGQ---LFYKKIYLRKLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSS  260 (623)
Q Consensus       185 ~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  260 (623)
                      .+++|++|++++|.+.+.   ....+..+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.  ++
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~  275 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK  275 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence            788999999999988732   22334566788888888888876554 44566778888888888877 5555554  67


Q ss_pred             CCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273          261 LNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       261 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      |++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            77777777777755 43 667777777777777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=5e-24  Score=227.68  Aligned_cols=268  Identities=27%  Similarity=0.299  Sum_probs=173.9

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN  144 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~  144 (623)
                      ++++|++++|.++ .+|..++   ++|++|++++|.+++. |.   .+++|++|++++|.++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            5777888877777 6776542   6777777777777653 22   4567777777777776 5665    356777777


Q ss_pred             cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273          145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +++|.+++ +|.   .+++|+.|++++|+++ .+|.    .+++|++|++++|.+.+. +.   ..++|+.|++++|.++
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence            77777764 333   4566777777777776 5554    246666666666666532 11   2345555555555555


Q ss_pred             cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCC
Q 038273          225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS  304 (623)
Q Consensus       225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  304 (623)
                      + +|   ..+++|+.|++++|.+++ +|.                           .+++|+.|++++|.+. .++.  .
T Consensus       175 ~-l~---~~~~~L~~L~Ls~N~l~~-l~~---------------------------~~~~L~~L~L~~N~l~-~l~~--~  219 (622)
T 3g06_A          175 S-LP---MLPSGLQELSVSDNQLAS-LPT---------------------------LPSELYKLWAYNNRLT-SLPA--L  219 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCSC-CCC---------------------------CCTTCCEEECCSSCCS-SCCC--C
T ss_pred             C-Cc---ccCCCCcEEECCCCCCCC-CCC---------------------------ccchhhEEECcCCccc-ccCC--C
Confidence            3 22   234555555555555543 121                           1234455555555444 2222  1


Q ss_pred             CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEE
Q 038273          305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI  384 (623)
Q Consensus       305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  384 (623)
                      +++|+.|++++|.+++ ++    ..+++|+.|++++|.++. +|.   .+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            2456666666665543 33    345889999999999995 454   6789999999999999 678889999999999


Q ss_pred             EccCCcCcCCCCCcccccc
Q 038273          385 DLSNNNLFGQIPGCLDNTS  403 (623)
Q Consensus       385 ~l~~n~l~~~~~~~~~~~~  403 (623)
                      ++++|++++..|..+....
T Consensus       290 ~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          290 NLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ECCSCCCCHHHHHHHHHHH
T ss_pred             EecCCCCCCcCHHHHHhcc
Confidence            9999999988887766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.7e-24  Score=209.41  Aligned_cols=204  Identities=23%  Similarity=0.254  Sum_probs=155.9

Q ss_pred             ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273          308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS  387 (623)
Q Consensus       308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  387 (623)
                      .+.++++++.++ .+|.. +  .+++++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            344555555443 23332 1  2467777777777776666667777777777777777775555666777888888888


Q ss_pred             CCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCc
Q 038273          388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV  467 (623)
Q Consensus       388 ~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  467 (623)
                      +|.+.+..+..+..                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        94 ~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           94 DNKLQALPIGVFDQ----------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             SSCCCCCCTTTTTT----------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCCcCCHhHccc----------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence            88776555544433                      34788888888888877777788899999999999999877777


Q ss_pred             cCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          468 SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      .|..+++|++|++++|++....+..+..+++|++|++++|++++..+..+..+++|+.+++++|||.|+|
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            7899999999999999999877777888999999999999999877777888899999999999999944

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.5e-24  Score=210.68  Aligned_cols=207  Identities=21%  Similarity=0.226  Sum_probs=160.4

Q ss_pred             cccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEc
Q 038273          307 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL  386 (623)
Q Consensus       307 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  386 (623)
                      ++++|++++|.+.+. +...|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            344444444444332 2223677788888888888887666667888888888888888888777777888888888888


Q ss_pred             cCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc-CCccccccccCCeeeCCCCcccccC
Q 038273          387 SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE-IPPQIGKLTSIRALNFSHNNLTGVI  465 (623)
Q Consensus       387 ~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~  465 (623)
                      ++|.+.+..+..+..                      +++|++|++++|.+++. +|..+..+++|++|++++|.+++..
T Consensus       108 ~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          108 VETNLASLENFPIGH----------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TTSCCCCSTTCCCTT----------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCccccCchhccc----------------------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            888887655544333                      45888888888888764 5888999999999999999999887


Q ss_pred             CccCCCCCCCc----EEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          466 PVSFSNLKQVE----SLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       466 ~~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +..+..+++|+    +|++++|++.+..+..+. ..+|+.|++++|++++..+..+..+++|+.+++++||+.|+|
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            77887777777    899999999976665554 458999999999999887777788999999999999999944

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.7e-25  Score=231.96  Aligned_cols=234  Identities=23%  Similarity=0.196  Sum_probs=163.8

Q ss_pred             CCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCc
Q 038273          212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLS  291 (623)
Q Consensus       212 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  291 (623)
                      +|+.|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+.+..+     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            44445555554444444445555555555555555544333  4555555555555555543221     2556666666


Q ss_pred             CccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhh-ccccCcEEEccccccccc
Q 038273          292 ENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLTRLRYLILANNNLEGE  370 (623)
Q Consensus       292 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~  370 (623)
                      +|.+.+..+.  .+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+.+.
T Consensus       108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            6655544332  2456666777777665554444 77889999999999999988887776 789999999999999865


Q ss_pred             CchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccccccc
Q 038273          371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS  450 (623)
Q Consensus       371 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  450 (623)
                       + ....+++|+.|++++|.+++..|. +..                      +++|+.|++++|.+++ +|..+..+++
T Consensus       185 -~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~----------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          185 -K-GQVVFAKLKTLDLSSNKLAFMGPE-FQS----------------------AAGVTWISLRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             -E-CCCCCTTCCEEECCSSCCCEECGG-GGG----------------------GTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             -c-ccccCCCCCEEECCCCCCCCCCHh-HcC----------------------CCCccEEEecCCcCcc-cchhhccCCC
Confidence             2 344699999999999999875554 433                      4599999999999994 6778999999


Q ss_pred             CCeeeCCCCccc-ccCCccCCCCCCCcEEECC
Q 038273          451 IRALNFSHNNLT-GVIPVSFSNLKQVESLDVS  481 (623)
Q Consensus       451 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls  481 (623)
                      |+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999999999998 6677788888888888775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.2e-24  Score=210.16  Aligned_cols=202  Identities=25%  Similarity=0.213  Sum_probs=162.7

Q ss_pred             CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273          306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID  385 (623)
Q Consensus       306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  385 (623)
                      +++++++++++.++ .+|.. +  .++++.|++++|.+++..+..+..+++|+.|++++|.+++..+  ...+++|+.|+
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~   83 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             CCccEEECCCCCCC-cCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence            34444444444442 33333 2  2578888888888887777888889999999999999885433  27889999999


Q ss_pred             ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273          386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI  465 (623)
Q Consensus       386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  465 (623)
                      +++|++. .+|..+.                      .+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus        84 Ls~N~l~-~l~~~~~----------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  140 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (290)
T ss_dssp             CCSSCCS-SCCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCCcCC-cCchhhc----------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence            9999886 3343332                      2458999999999999777788999999999999999999888


Q ss_pred             CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +..|..+++|+.|+|++|+++...+..+..+++|++|++++|+++ .+|..+...++|+.+++++|||.|+|
T Consensus       141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            888999999999999999999777777889999999999999999 55666667889999999999999943

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.2e-23  Score=202.48  Aligned_cols=222  Identities=21%  Similarity=0.213  Sum_probs=159.7

Q ss_pred             EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273          117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE  196 (623)
Q Consensus       117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  196 (623)
                      ..+..+..+. .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            3455555555 6676553   47888888888888777777888888888888888887 67766667788888888888


Q ss_pred             CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc-cchhccCCCCCCEEECccccccccc
Q 038273          197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN-IPAWLGNLSSLNDIMMAINHLQGPI  275 (623)
Q Consensus       197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~  275 (623)
                      |.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|++|++++|++.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            888877777888888888888888888877666788889999999999988764 5788888899999999999888777


Q ss_pred             cccccCCCCCc----EEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCC
Q 038273          276 PLEFCQLNYLE----ILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS  344 (623)
Q Consensus       276 ~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  344 (623)
                      +..+..+++|+    .|++++|.+.+..+......+|++|++++|.+.+ ++...|..+++|+.|++++|++.
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence            66666666665    7888888877555544444445555555544432 22222444444444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.8e-23  Score=198.04  Aligned_cols=199  Identities=24%  Similarity=0.268  Sum_probs=86.5

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      +.+++++++++++. +|..+.  +++++|++++|.++ .++...|.++++|++|++++|+++...+..+.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            34555555555542 333222  34555555555554 333333344555555555555554444444444555555555


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+.
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCc
Confidence            555444 333333333444444444444444444444444444444444444444 344333334444444444444443


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCC
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN  245 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  245 (623)
                      +..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            333333333333333333333333322223333333333333333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.8e-23  Score=199.25  Aligned_cols=224  Identities=19%  Similarity=0.180  Sum_probs=115.2

Q ss_pred             ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273           42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS  121 (623)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (623)
                      +..+++.++.+...  .....+++|+.|++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            33444444444322  22334555666666665555 3332  24555666666666655542  245555555555555


Q ss_pred             CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273          122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      +|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+++
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCc
Confidence            55555 333333333455555555555555444444555555666666655555 4444444455555555555555554


Q ss_pred             ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273          202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ  281 (623)
Q Consensus       202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  281 (623)
                      ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.+++..|.+.+.+|..++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence            444444555555555555555554444445555555555555554432       2334455555555555555544433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.2e-22  Score=196.40  Aligned_cols=209  Identities=21%  Similarity=0.264  Sum_probs=161.6

Q ss_pred             cCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeE
Q 038273          256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT  335 (623)
Q Consensus       256 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  335 (623)
                      ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.                       + +  ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-----------------------~-~--~~l~~l~~L~~   89 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----------------------D-I--SALKELTNLTY   89 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-----------------------C-C--GGGTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-----------------------C-c--hhhcCCCCCCE
Confidence            3456666666666665522  23455566666666665554                       2 1  13667788888


Q ss_pred             EeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCC
Q 038273          336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA  415 (623)
Q Consensus       336 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~  415 (623)
                      |++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..              
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------  155 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------  155 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------
Confidence            888888888777777888888888888888888777777888888999999998887666655443              


Q ss_pred             CccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccccc
Q 038273          416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE  495 (623)
Q Consensus       416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  495 (623)
                              +++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+       .
T Consensus       156 --------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~  220 (272)
T 3rfs_A          156 --------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T  220 (272)
T ss_dssp             --------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------C
T ss_pred             --------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------c
Confidence                    3488899999999987777778899999999999999998888889999999999999998874       3


Q ss_pred             CCCCCeeecccCcccccCCCCccccC
Q 038273          496 LNVLAVFSVAHNNLSGKIPEWTAQFT  521 (623)
Q Consensus       496 l~~L~~L~l~~N~l~~~~~~~~~~~~  521 (623)
                      ++.|+.++++.|.++|.+|.++..++
T Consensus       221 ~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          221 CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CcHHHHHHHHHHhCCCcccCcccccC
Confidence            56789999999999999998765443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=8.3e-23  Score=195.13  Aligned_cols=178  Identities=20%  Similarity=0.238  Sum_probs=98.7

Q ss_pred             eeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273          333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG  412 (623)
Q Consensus       333 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~  412 (623)
                      .++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..           
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------   81 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-----------   81 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-----------
Confidence            344555555444 2232222  34555555555555444445555555555555555555444433332           


Q ss_pred             CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccc
Q 038273          413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ  492 (623)
Q Consensus       413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  492 (623)
                                 +++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..
T Consensus        82 -----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           82 -----------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             -----------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             -----------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence                       225555555555555444455556666666666666666555555666666666666666666555555


Q ss_pred             cccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273          493 LVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       493 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      +..+++|++|++++|++++..+..+..+++|+.+++++||+.|
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            6666666666666666665555555566666666666666666

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.9e-22  Score=193.00  Aligned_cols=180  Identities=23%  Similarity=0.181  Sum_probs=127.2

Q ss_pred             CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCC
Q 038273          109 IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN  188 (623)
Q Consensus       109 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  188 (623)
                      +.+++++++++++++.++ .+|..+.   ++++.|++++|.+++..+..|.++++|++|++++|.++ .++..  ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence            445666777777777766 6665553   47777777777777666677777777777777777776 55543  46777


Q ss_pred             CCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcc
Q 038273          189 LEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAI  268 (623)
Q Consensus       189 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  268 (623)
                      |++|++++|.+. ..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            777777777776 3455666677777777777777766666677777777777777777766666677777777777777


Q ss_pred             ccccccccccccCCCCCcEEeCcCccce
Q 038273          269 NHLQGPIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       269 n~~~~~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      |++.+..+..|..+++|+.|++++|.+.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            7777665566667777777777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.7e-22  Score=188.49  Aligned_cols=178  Identities=14%  Similarity=0.057  Sum_probs=101.7

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCC-CCCcCChHHhhCCCCCCEEEccC-CcCcCcCCCCCCCCCCCCEE
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFPNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHWHLDTL  118 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L  118 (623)
                      +|++|++++|++++..+..+.++++|++|++++|. ++ .++...|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            56666666666665555566666666666666665 55 45554456666666666665 66665555566666666666


Q ss_pred             EccCCCCCCCCChhhhhcCCCcc---EEecccC-cccccCCcccCCCCCCC-EEEccCCcCCcccchHHhhCCCCCCEEE
Q 038273          119 HVSKNFFQGNIPLEIGVYFPRLV---YLNLSRN-DFNGSIPSSIGDMNSLK-FLDLSHNQLTGEIPEHLVIGCFNLEYLV  193 (623)
Q Consensus       119 ~l~~n~l~~~~p~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~  193 (623)
                      ++++|.++ .+|.  +..+++|+   +|++++| .++...+..|.++++|+ +|++++|+++ .+|...|.. ++|++|+
T Consensus       111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred             eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence            66666665 3554  22244555   6666666 55554445556666666 6666666665 555555433 4555555


Q ss_pred             cccCc-CccccccccccC-CCCCEEecccccCc
Q 038273          194 LSENS-LHGQLFYKKIYL-RKLARLHLDANYCT  224 (623)
Q Consensus       194 l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~  224 (623)
                      +++|. +....+..+..+ ++|+.|++++|.++
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            55553 544444444444 45555555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=4.4e-23  Score=208.46  Aligned_cols=252  Identities=20%  Similarity=0.193  Sum_probs=149.3

Q ss_pred             EEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCCh----HHhhCCC-CCCEEEccCCcCcCcCCCCCCCC-----C
Q 038273           44 SVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPN----WLLENNT-NLNTLVLRNNSLSGPFRMPIQPH-----W  113 (623)
Q Consensus        44 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~  113 (623)
                      +++++.|.+++.+|..+...++|++||+++|.++ ..+.    ..+..++ +|++|++++|++++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4567777777777776666666888888877776 3443    3346666 77777777777766555444443     6


Q ss_pred             CCCEEEccCCCCCCCCChhhhhc---C-CCccEEecccCcccccCCccc----CC-CCCCCEEEccCCcCCcccchHH--
Q 038273          114 HLDTLHVSKNFFQGNIPLEIGVY---F-PRLVYLNLSRNDFNGSIPSSI----GD-MNSLKFLDLSHNQLTGEIPEHL--  182 (623)
Q Consensus       114 ~L~~L~l~~n~l~~~~p~~~~~~---l-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~--  182 (623)
                      +|++|++++|.+.+..+..+...   + ++|++|++++|.+++..+..+    .. .++|++|++++|.+++.....+  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            77777777777775555443332   2 577777777777765544333    33 2577777777777763222221  


Q ss_pred             -hhCCC-CCCEEEcccCcCccccccccc----cC-CCCCEEecccccCccc----cCccCcC-CCCCcEEECcCCcCccc
Q 038273          183 -VIGCF-NLEYLVLSENSLHGQLFYKKI----YL-RKLARLHLDANYCTGE----IPKSLSN-CSPLEGLYMSDNNLYGN  250 (623)
Q Consensus       183 -~~~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~L~~n~l~~~  250 (623)
                       +...+ +|++|++++|.+++..+..+.    .+ ++|+.|++++|.++..    ++..+.. .++|++|++++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             12333 777777777777655543332    33 4677777777766542    2233333 34677777777766654


Q ss_pred             cc----hhccCCCCCCEEECccccccccc-------cccccCCCCCcEEeCcCccce
Q 038273          251 IP----AWLGNLSSLNDIMMAINHLQGPI-------PLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       251 ~~----~~l~~l~~L~~L~l~~n~~~~~~-------~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      .+    ..+..+++|++|++++|.+.+..       +..+..+++|+.|++++|.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            33    22345566667777666643222       223445555666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=9.4e-22  Score=186.43  Aligned_cols=195  Identities=15%  Similarity=0.179  Sum_probs=88.3

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCc-CcCcCCCCCCCCCCCCEEEccC-CCCCCCCChhhhhcCCCccE
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS-LSGPFRMPIQPHWHLDTLHVSK-NFFQGNIPLEIGVYFPRLVY  142 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~l~~L~~  142 (623)
                      +|++|++++|.++ .+|...|.++++|++|++++|+ +++..+..|.++++|++|++++ |.++ .+|...+..+++|++
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            4555555555555 3444334455555555555554 4444444444555555555554 4444 333333333444444


Q ss_pred             EecccCcccccCCcccCCCCCCC---EEEccCC-cCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCC-EEe
Q 038273          143 LNLSRNDFNGSIPSSIGDMNSLK---FLDLSHN-QLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLA-RLH  217 (623)
Q Consensus       143 L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~  217 (623)
                      |++++|.+++ +|. +..+++|+   +|++++| .++ .++..                        .+..+++|+ .|+
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~------------------------~~~~l~~L~~~L~  162 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVN------------------------AFQGLCNETLTLK  162 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTT------------------------TTTTTBSSEEEEE
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcc------------------------cccchhcceeEEE
Confidence            4444444442 332 44444444   4444444 443 34433                        344444444 444


Q ss_pred             cccccCccccCccCcCCCCCcEEECcCCc-CccccchhccCC-CCCCEEECccccccccccccccCCCCCcEEeCcC
Q 038273          218 LDANYCTGEIPKSLSNCSPLEGLYMSDNN-LYGNIPAWLGNL-SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSE  292 (623)
Q Consensus       218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  292 (623)
                      +++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|.+++..+.   .+++|+.|++++
T Consensus       163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred             cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence            4444444222223333 445555555552 444444444444 4555555555554432221   344455555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=192.18  Aligned_cols=227  Identities=18%  Similarity=0.153  Sum_probs=167.4

Q ss_pred             CCCcEEEccCCCCCCcCChHH--hhCCCCCCEEEccCCcCcCcCCCCC--CCCCCCCEEEccCCCCCCCCC----hhhhh
Q 038273           64 HDLEYVDFSDSNLKGEFPNWL--LENNTNLNTLVLRNNSLSGPFRMPI--QPHWHLDTLHVSKNFFQGNIP----LEIGV  135 (623)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~  135 (623)
                      ..++.+.+.++.++...-..+  +..+++|++|++++|.+++..+..+  ..+++|++|++++|.+.+..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            457888888877652111111  1235679999999999998888887  889999999999999986554    2223 


Q ss_pred             cCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcc--cch-HHhhCCCCCCEEEcccCcCcccccc---cccc
Q 038273          136 YFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE--IPE-HLVIGCFNLEYLVLSENSLHGQLFY---KKIY  209 (623)
Q Consensus       136 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~  209 (623)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++. ..+..+++|++|++++|.++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478999999999999888888899999999999999987632  222 2235688899999999988642221   2457


Q ss_pred             CCCCCEEecccccCccccCccCcCC---CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCc
Q 038273          210 LRKLARLHLDANYCTGEIPKSLSNC---SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLE  286 (623)
Q Consensus       210 ~~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  286 (623)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            7888888888888887767666665   68888888888887 4455553  6788888888888754 22 56677778


Q ss_pred             EEeCcCccce
Q 038273          287 ILDLSENNIS  296 (623)
Q Consensus       287 ~L~l~~n~~~  296 (623)
                      .|++++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            8888777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.3e-22  Score=204.94  Aligned_cols=64  Identities=13%  Similarity=0.218  Sum_probs=33.8

Q ss_pred             ccCCeeeCCCCcccccCC----ccCCCCCCCcEEECCCCcccccC-------ccccccCCCCCeeecccCccccc
Q 038273          449 TSIRALNFSHNNLTGVIP----VSFSNLKQVESLDVSYNNLNGKI-------PPQLVELNVLAVFSVAHNNLSGK  512 (623)
Q Consensus       449 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~-------p~~~~~l~~L~~L~l~~N~l~~~  512 (623)
                      ++|++|++++|.+++..+    ..+..+++|+.|++++|.+....       +..+..+++|+.|++++|++...
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            356666666666654332    23455566666666666633222       22344555566666666665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=5.4e-23  Score=209.96  Aligned_cols=240  Identities=18%  Similarity=0.208  Sum_probs=144.3

Q ss_pred             CCcccCCCCCCcEEEccCCCCCCcCChHH---hhCCCCCCEEEccCCcC---cCcCCCCC-------CCCCCCCEEEccC
Q 038273           56 FPKFLYNQHDLEYVDFSDSNLKGEFPNWL---LENNTNLNTLVLRNNSL---SGPFRMPI-------QPHWHLDTLHVSK  122 (623)
Q Consensus        56 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~~l~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~l~~  122 (623)
                      ++..+..+++|++|++++|.+++..+..+   +..+++|++|++++|.+   ++..|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            44555566666677776666653322221   24566666666666533   22223222       4566777777777


Q ss_pred             CCCCC----CCChhhhhcCCCccEEecccCcccccCCcccC----CC---------CCCCEEEccCCcCC-cccch--HH
Q 038273          123 NFFQG----NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG----DM---------NSLKFLDLSHNQLT-GEIPE--HL  182 (623)
Q Consensus       123 n~l~~----~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~~--~~  182 (623)
                      |.+.+    .+|..+.. +++|++|++++|.++...+..+.    .+         ++|++|++++|+++ +.++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            76664    23444443 56777777777776543333332    22         67777777777775 23332  23


Q ss_pred             hhCCCCCCEEEcccCcCcc-----ccccccccCCCCCEEecccccCc----cccCccCcCCCCCcEEECcCCcCccc---
Q 038273          183 VIGCFNLEYLVLSENSLHG-----QLFYKKIYLRKLARLHLDANYCT----GEIPKSLSNCSPLEGLYMSDNNLYGN---  250 (623)
Q Consensus       183 ~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~---  250 (623)
                      +..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++    ..+|..+..+++|+.|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            3467777777777777663     22335666777777777777774    44556667777777777777777654   


Q ss_pred             -cchhccC--CCCCCEEECccccccc----cccccc-cCCCCCcEEeCcCccce
Q 038273          251 -IPAWLGN--LSSLNDIMMAINHLQG----PIPLEF-CQLNYLEILDLSENNIS  296 (623)
Q Consensus       251 -~~~~l~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~~~  296 (623)
                       ++..+..  +++|+.|++++|.+..    .++..+ .++++|+.|++++|.+.
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence             3444533  6777777777777765    244444 45677777777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=192.61  Aligned_cols=226  Identities=20%  Similarity=0.214  Sum_probs=166.2

Q ss_pred             cccEEEccCCCCCCC-CCc--ccCCCCCCcEEEccCCCCCCcCChHHh-hCCCCCCEEEccCCcCcCcCC----CCCCCC
Q 038273           41 QLESVKLSGSGIHAT-FPK--FLYNQHDLEYVDFSDSNLKGEFPNWLL-ENNTNLNTLVLRNNSLSGPFR----MPIQPH  112 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~-~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~----~~~~~l  112 (623)
                      .++.+.+.++.++.. +..  ....+++|++|++++|.+++..|..++ ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            577778877766432 111  112345688888888888766666544 677888888888888876443    234567


Q ss_pred             CCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCccccc--C--CcccCCCCCCCEEEccCCcCCcccchH---HhhC
Q 038273          113 WHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS--I--PSSIGDMNSLKFLDLSHNQLTGEIPEH---LVIG  185 (623)
Q Consensus       113 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~  185 (623)
                      ++|++|++++|.+. .++...+..+++|++|++++|++.+.  .  +..+..+++|++|++++|+++ .++..   ++..
T Consensus       145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            88888888888887 44444444477888888888886532  1  233467889999999999987 55543   5567


Q ss_pred             CCCCCEEEcccCcCccccccccccC---CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCC
Q 038273          186 CFNLEYLVLSENSLHGQLFYKKIYL---RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN  262 (623)
Q Consensus       186 l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  262 (623)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            8999999999999988777766665   69999999999998 5566654  7999999999999864 33 67889999


Q ss_pred             EEECccccccc
Q 038273          263 DIMMAINHLQG  273 (623)
Q Consensus       263 ~L~l~~n~~~~  273 (623)
                      .|++++|.++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999998863

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=6.8e-23  Score=205.31  Aligned_cols=248  Identities=14%  Similarity=0.171  Sum_probs=134.2

Q ss_pred             CcEEEccCCCCCCcCChHHhhCC--CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCC-CChhhhhcCCCccE
Q 038273           66 LEYVDFSDSNLKGEFPNWLLENN--TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGN-IPLEIGVYFPRLVY  142 (623)
Q Consensus        66 L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~  142 (623)
                      ++.++++++.+.   + ..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. +|..+ ..+++|++
T Consensus        49 ~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSE
T ss_pred             heeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCE
Confidence            556666655543   1 222344  5666666666666554333 34566666666666665533 33333 23556666


Q ss_pred             EecccCcccccCCcccCCCCCCCEEEccCC-cCCcccchHHhhCCCCCCEEEcccC-cCccc-cccccccCC-CCCEEec
Q 038273          143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHN-QLTGEIPEHLVIGCFNLEYLVLSEN-SLHGQ-LFYKKIYLR-KLARLHL  218 (623)
Q Consensus       143 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l  218 (623)
                      |++++|.+++..+..++++++|++|++++| .+++......+.++++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            666666666555556666666666666666 4442212223345666666666666 55543 344455566 6666666


Q ss_pred             ccc--cCc-cccCccCcCCCCCcEEECcCCc-CccccchhccCCCCCCEEECcccc-ccccccccccCCCCCcEEeCcCc
Q 038273          219 DAN--YCT-GEIPKSLSNCSPLEGLYMSDNN-LYGNIPAWLGNLSSLNDIMMAINH-LQGPIPLEFCQLNYLEILDLSEN  293 (623)
Q Consensus       219 ~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n  293 (623)
                      ++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            666  333 2334445556666666666666 555555566666666666666663 22111224555666666666666


Q ss_pred             cceeeCCCCC--CC-CcccEEEccCccccccCCC
Q 038273          294 NISGTLPSCS--SH-STIQQVHLSKNMLYGPLKY  324 (623)
Q Consensus       294 ~~~~~~~~~~--~~-~~L~~L~l~~n~l~~~~~~  324 (623)
                       +    +...  .. ..++.|++++|.+++..+.
T Consensus       283 -i----~~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          283 -V----PDGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             -S----CTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             -c----CHHHHHHHHhhCcceEEecccCccccCC
Confidence             2    1111  11 2355555666666555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.4e-22  Score=203.13  Aligned_cols=199  Identities=21%  Similarity=0.260  Sum_probs=99.3

Q ss_pred             CcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCc-CChHHhhCCCCCCEE
Q 038273           16 LKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FPNWLLENNTNLNTL   94 (623)
Q Consensus        16 L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~L   94 (623)
                      ++.+|++++.+.......   ....++++|++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+++|++|
T Consensus        49 ~~~l~l~~~~~~~~~~~~---~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGR---LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCCHHHHHH---HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEE
T ss_pred             heeeccccccCCHHHHHh---hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEE
Confidence            566666665543211100   1002566666666666554443 44566666666666665533 332 23566666666


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCC-CCCCC-CChhhhhcCCCccEEecccC-ccccc-CCcccCCCC-CCCEEEc
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKN-FFQGN-IPLEIGVYFPRLVYLNLSRN-DFNGS-IPSSIGDMN-SLKFLDL  169 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~-~L~~L~l  169 (623)
                      ++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            66666655444445555666666666665 34421 222222 2455666666655 55432 334445555 5555555


Q ss_pred             cCC--cCC-cccchHHhhCCCCCCEEEcccCc-CccccccccccCCCCCEEecccc
Q 038273          170 SHN--QLT-GEIPEHLVIGCFNLEYLVLSENS-LHGQLFYKKIYLRKLARLHLDAN  221 (623)
Q Consensus       170 ~~n--~l~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n  221 (623)
                      ++|  .++ +.++. .+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          203 SGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            555  232 12222 22345555555555555 44344444444445555555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.6e-20  Score=179.16  Aligned_cols=177  Identities=19%  Similarity=0.205  Sum_probs=104.2

Q ss_pred             CCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEc
Q 038273          115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL  194 (623)
Q Consensus       115 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  194 (623)
                      .++++++++.++ .+|..+.   ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEEC
Confidence            344555555555 4554433   35556666666655555555556666666666666655 444444455566666666


Q ss_pred             ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc
Q 038273          195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP  274 (623)
Q Consensus       195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  274 (623)
                      ++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            66665555555555566666666666666655555556666666666666666655555566666666666666666655


Q ss_pred             ccccccCCCCCcEEeCcCccce
Q 038273          275 IPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       275 ~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      .+..+..+++|+.|++++|.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHHhCCCCCCEEEeeCCcee
Confidence            5556666666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.4e-22  Score=206.81  Aligned_cols=235  Identities=20%  Similarity=0.248  Sum_probs=161.3

Q ss_pred             cccEEEccCCCCCCC----CCcccCCCCCCcEEEccCCCC---CCcCChHH------hhCCCCCCEEEccCCcCcC----
Q 038273           41 QLESVKLSGSGIHAT----FPKFLYNQHDLEYVDFSDSNL---KGEFPNWL------LENNTNLNTLVLRNNSLSG----  103 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~l---~~~~~~~~------~~~l~~L~~L~L~~n~i~~----  103 (623)
                      +|++|++++|.+...    ++..+..+++|++|++++|.+   ++.+|..+      +..+++|++|++++|.+.+    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            677777777777654    233466777788888877533   33445443      3567788888888887765    


Q ss_pred             cCCCCCCCCCCCCEEEccCCCCCCCCChhhhhc---C---------CCccEEecccCccc-ccCC---cccCCCCCCCEE
Q 038273          104 PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVY---F---------PRLVYLNLSRNDFN-GSIP---SSIGDMNSLKFL  167 (623)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~---l---------~~L~~L~L~~n~i~-~~~~---~~~~~l~~L~~L  167 (623)
                      .++..+..+++|++|++++|.+.+..+..+...   +         ++|++|++++|.++ ...+   ..+..+++|++|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            244456677788888888887753333333322   2         68888888888876 2333   356677888888


Q ss_pred             EccCCcCCcc----cchHHhhCCCCCCEEEcccCcCc----cccccccccCCCCCEEecccccCccc----cCccC--cC
Q 038273          168 DLSHNQLTGE----IPEHLVIGCFNLEYLVLSENSLH----GQLFYKKIYLRKLARLHLDANYCTGE----IPKSL--SN  233 (623)
Q Consensus       168 ~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~--~~  233 (623)
                      ++++|+++..    +....+..+++|++|++++|.++    ...+..+..+++|+.|++++|.+++.    ++..+  ..
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            8888877621    22213356788888888888875    45566777788888888888887754    34555  33


Q ss_pred             CCCCcEEECcCCcCcc----ccchhc-cCCCCCCEEECccccccccc
Q 038273          234 CSPLEGLYMSDNNLYG----NIPAWL-GNLSSLNDIMMAINHLQGPI  275 (623)
Q Consensus       234 l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~  275 (623)
                      +++|+.|++++|.+++    .+|..+ .++++|++|++++|.+.+..
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            8889999999998887    366666 66889999999999888655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.9e-20  Score=182.94  Aligned_cols=193  Identities=21%  Similarity=0.310  Sum_probs=103.7

Q ss_pred             CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273           61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL  140 (623)
Q Consensus        61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  140 (623)
                      .++++|++|++++|.++ .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++ .+.. +++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L  109 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSI  109 (308)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTC
T ss_pred             HHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCC
Confidence            35666777777777666 4542  3566677777777776665433  666666666666666665 333 2222 4566


Q ss_pred             cEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccc
Q 038273          141 VYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA  220 (623)
Q Consensus       141 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  220 (623)
                      ++|++++|.+++. + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+..+                
T Consensus       110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~----------------  168 (308)
T 1h6u_A          110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP----------------  168 (308)
T ss_dssp             CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG----------------
T ss_pred             CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh----------------
Confidence            6666666665532 2 2555566666666666555 3333  3445555555555555443222                


Q ss_pred             ccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273          221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       221 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                                +..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.++
T Consensus       169 ----------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          169 ----------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ----------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             ----------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence                      4444555555555555443322  444555555555555554332  2445555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.5e-20  Score=183.42  Aligned_cols=190  Identities=18%  Similarity=0.278  Sum_probs=155.9

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      +|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|++++.  ..+..+++|++|++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            89999999999875 45 5889999999999999998 5665  68999999999999999874  36889999999999


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .++. + ..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|++|++++|.+.
T Consensus       115 ~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          115 TSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             TTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccC
Confidence            999998 5654 3 447899999999999985433  889999999999999998 6666  578999999999999987


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCcc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG  249 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  249 (623)
                      +..+  +..+++|+.|++++|.+++..  .+..+++|+.|++++|.+++
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            6543  666777777777777776543  25666777777777776653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=2.9e-20  Score=186.73  Aligned_cols=243  Identities=18%  Similarity=0.111  Sum_probs=165.2

Q ss_pred             CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE-EEc
Q 038273          116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY-LVL  194 (623)
Q Consensus       116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l  194 (623)
                      ++++.++++++ ++|..+.   +++++|+|++|+|+...+.+|.++++|++|++++|++.+.+|..+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888888 7887664   478888898888886666778888888888888888865777777777777665 445


Q ss_pred             ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc
Q 038273          195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP  274 (623)
Q Consensus       195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  274 (623)
                      ++|.+....+..|..+++|+.|++++|+++...+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556666666666666666666666666666544444444445555555432                       223322


Q ss_pred             ccccccCCC-CCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhc
Q 038273          275 IPLEFCQLN-YLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER  353 (623)
Q Consensus       275 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  353 (623)
                      .+..|..+. .++.|++++|+++...+..+...+++++++.++...+.++.++|..+++|++||+++|+++...+..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            333333332 4666777777776555555566677777777554446777777899999999999999998554433   


Q ss_pred             cccCcEEEcccccccccCchhhcCCCCCCEEEccCC
Q 038273          354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN  389 (623)
Q Consensus       354 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  389 (623)
                      +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4566677666655443556 4788999999999754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=3.8e-20  Score=185.81  Aligned_cols=204  Identities=17%  Similarity=0.129  Sum_probs=123.9

Q ss_pred             cEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE-Eec
Q 038273           67 EYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY-LNL  145 (623)
Q Consensus        67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~-L~L  145 (623)
                      ++++.+++.++ ++|..+   .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.+|...+..+++++. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 666543   3467777777777766666667777777777777777655566665555555554 455


Q ss_pred             ccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc-CcCccccccccccCC-CCCEEecccccC
Q 038273          146 SRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE-NSLHGQLFYKKIYLR-KLARLHLDANYC  223 (623)
Q Consensus       146 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~~  223 (623)
                      ..|+++...|..|..+++|++|++++|++. .++...+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            567777666677777777777777777776 55555444555666666654 344444444444443 456666666666


Q ss_pred             ccccCccCcCCCCCcEEECcC-CcCccccchhccCCCCCCEEECcccccccccc
Q 038273          224 TGEIPKSLSNCSPLEGLYMSD-NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP  276 (623)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  276 (623)
                      +.+.+..| ...+|+.+++.+ |.++...+..|..+++|++|++++|+++...+
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            64433333 335566666653 44444444455666666666666666664433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1e-20  Score=176.32  Aligned_cols=119  Identities=22%  Similarity=0.326  Sum_probs=95.8

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      +|+.|++++|.+++..|..|..+++|++|+|++|.++.+.+..|.++++|+.|+|++|++.+..|..|..+++|++|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            55555555555665667778888888888888888887777778888899999999999988888888888999999999


Q ss_pred             cCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 038273          506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPE  549 (623)
Q Consensus       506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~  549 (623)
                      +|++++..+..+..+++|+.+++++||+.|     +|+..|...
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-----~c~l~~l~~  175 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFIC-----DCHLKWLAD  175 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHH
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCC-----CCccHHHHH
Confidence            999988888778888899999999999999     555544433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=2.2e-20  Score=188.27  Aligned_cols=179  Identities=21%  Similarity=0.177  Sum_probs=126.6

Q ss_pred             eEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhc-CCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273          334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC-RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG  412 (623)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~  412 (623)
                      +.++++++.++. +|..+.  +.++.|+|++|.+++..+..+. .+++|+.|++++|++.+..+..+..           
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   86 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-----------   86 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence            456666666663 443332  3467777777777766666665 6777777777777776655554443           


Q ss_pred             CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccc
Q 038273          413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ  492 (623)
Q Consensus       413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  492 (623)
                                 +++|++|+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|+++...+..
T Consensus        87 -----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           87 -----------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             -----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             -----------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence                       347777777777777666667788888888888888888777888888888888888888888655555


Q ss_pred             c---ccCCCCCeeecccCcccccCCCCccccCC--CCCccccCCCCCCCC
Q 038273          493 L---VELNVLAVFSVAHNNLSGKIPEWTAQFTT--FKEDSYEGNPLLCGK  537 (623)
Q Consensus       493 ~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~l~l~~Np~~C~~  537 (623)
                      +   ..+++|+.|++++|+++...+..+..++.  ++.+++++|||.|+|
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            5   56788888888888888665555656665  377888888888865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.4e-19  Score=165.80  Aligned_cols=181  Identities=23%  Similarity=0.286  Sum_probs=113.7

Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273           43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK  122 (623)
Q Consensus        43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  122 (623)
                      +.++++++++.. +|..+  .++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            455666665542 33322  346677777777666 45555456667777777777766665555566667777777777


Q ss_pred             CCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccc
Q 038273          123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ  202 (623)
Q Consensus       123 n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  202 (623)
                      |.++ .+|...+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+ 
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec-
Confidence            7666 455544444667777777777776555555667777777777777776 5666555667777777777765542 


Q ss_pred             cccccccCCCCCEEecccccCccccCccCcCCCC
Q 038273          203 LFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP  236 (623)
Q Consensus       203 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  236 (623)
                            .+++|+.|+++.|++++.+|..++.++.
T Consensus       163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                  3456666666666666666666555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3e-19  Score=165.17  Aligned_cols=181  Identities=17%  Similarity=0.144  Sum_probs=154.5

Q ss_pred             cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273           17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL   96 (623)
Q Consensus        17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (623)
                      +.++.+++.+.......   .  .+|++|++++|++++..+..+..+++|++|++++|.++ .++...|..+++|++|++
T Consensus        10 ~~v~c~~~~l~~~p~~~---~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI---P--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TEEECCSSCCSSCCSCC---C--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecCCCccCCCCCC---C--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence            67788877665433211   2  28999999999999777778899999999999999998 677777789999999999


Q ss_pred             cCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc
Q 038273           97 RNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG  176 (623)
Q Consensus        97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  176 (623)
                      ++|++++..+..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. 
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-  161 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence            999999888888899999999999999999 677666666889999999999999777777999999999999999887 


Q ss_pred             ccchHHhhCCCCCCEEEcccCcCccccccccccCCC
Q 038273          177 EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK  212 (623)
Q Consensus       177 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  212 (623)
                             ..+++|++|+++.|.+++.+|..++.++.
T Consensus       162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                   34678999999999999999988776554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3.8e-20  Score=172.39  Aligned_cols=110  Identities=16%  Similarity=0.258  Sum_probs=75.4

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      +|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+++
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            44455555555554555566666777777777777776666667777777777777777776666777777777777777


Q ss_pred             cCcccccCCCCccccCCCCCccccCCCCCC
Q 038273          506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      +|++++..|..+..+++|+.+++++||+.|
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            777777667667677777777777777777

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=6e-19  Score=165.44  Aligned_cols=111  Identities=21%  Similarity=0.285  Sum_probs=79.9

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      +|+.|++++|.++...+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            4444444444444344455667777888888888887766677777888888888888877 567777778888888888


Q ss_pred             cCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +|++++..+..+..+++|+.+++++||+.|+|
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            88887776666777788888888888888843

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.4e-18  Score=183.23  Aligned_cols=186  Identities=22%  Similarity=0.283  Sum_probs=93.3

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN  144 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~  144 (623)
                      +|++|++++|.++ .+|..+   .++|++|++++|+++. +|   ..+++|++|++++|.++ .+|. +..   +|++|+
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~---~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLS-TLPE-LPA---SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-CCT---TCCEEE
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCC-Ccch-hhc---CCCEEE
Confidence            4555555555554 244432   2445555555555542 22   22445555555555555 2444 221   555555


Q ss_pred             cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273          145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +++|.+++ +|.   .+++|++|++++|.++ .+|.    .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            55555553 333   3455555555555554 3443    24455555555555544 222 32  55555555555555


Q ss_pred             cccCccCcCCCCC-------cEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273          225 GEIPKSLSNCSPL-------EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ  281 (623)
Q Consensus       225 ~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  281 (623)
                       .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus       194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          194 -SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             -SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             -chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence             3333 332  44       66677666666 34555555667777777777666666655544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3e-18  Score=159.49  Aligned_cols=153  Identities=21%  Similarity=0.258  Sum_probs=105.1

Q ss_pred             eEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCC
Q 038273          334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGS  413 (623)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~  413 (623)
                      +.++++++.++. +|..+.  ++++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..+...           
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-----------   79 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-----------   79 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-----------
Confidence            345566665552 333222  456666666666665555566666677777777776665555555432           


Q ss_pred             CCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccc
Q 038273          414 SAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQL  493 (623)
Q Consensus       414 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  493 (623)
                                 ++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+
T Consensus        80 -----------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           80 -----------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             -----------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             -----------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence                       367777777777775555556777888888888888887777788888888888888888887777777


Q ss_pred             ccCCCCCeeecccCcccc
Q 038273          494 VELNVLAVFSVAHNNLSG  511 (623)
Q Consensus       494 ~~l~~L~~L~l~~N~l~~  511 (623)
                      ..+++|++|++++|++.+
T Consensus       149 ~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTCTTCCEEECCSSCEEC
T ss_pred             hCCCCCCEEEeCCCCcCC
Confidence            778888888888888765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=7e-18  Score=177.94  Aligned_cols=186  Identities=26%  Similarity=0.329  Sum_probs=102.1

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      +|++|++++|++++ +|..+  .++|++|++++|.++ .+|    ..+++|++|++++|++++ +|. +.+  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            45666666666654 44433  255666666666665 555    235566666666666655 333 333  6666666


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.++ .+|.    .+++|+.|++++|.+++ +|.   .+++|++|++++|+++ .+|.  +.  ++|++|++++|.++
T Consensus       128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCS
T ss_pred             CCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCC
Confidence            666665 3554    24566666666666653 333   3556666666666665 4555  22  56666666666655


Q ss_pred             cccccccccCCCC-------CEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccC
Q 038273          201 GQLFYKKIYLRKL-------ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN  257 (623)
Q Consensus       201 ~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  257 (623)
                      . +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus       194 ~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          194 S-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             S-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             c-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            2 222 322  44       66666666665 34554555666666666666666555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3.3e-18  Score=172.38  Aligned_cols=176  Identities=25%  Similarity=0.239  Sum_probs=123.6

Q ss_pred             CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccC-CCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEc
Q 038273          116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL  194 (623)
Q Consensus       116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  194 (623)
                      ++++++++.+. .+|..+.   +.++.|+|++|.+++..+..+. ++++|++|++++|+++ .++...|.++++|++|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            46667766666 5666543   3577777777777766666666 7777777777777777 666655667777777777


Q ss_pred             ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhc---cCCCCCCEEECccccc
Q 038273          195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL---GNLSSLNDIMMAINHL  271 (623)
Q Consensus       195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~~  271 (623)
                      ++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|++++..+..|   ..+++|+.|++++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            7777776666667777777777777777777667777777888888888887776554444   4577788888888877


Q ss_pred             cccccccccCCCC--CcEEeCcCccce
Q 038273          272 QGPIPLEFCQLNY--LEILDLSENNIS  296 (623)
Q Consensus       272 ~~~~~~~~~~l~~--L~~L~l~~n~~~  296 (623)
                      ....+..+..++.  ++.|++++|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            7665566666665  366777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1e-17  Score=155.83  Aligned_cols=151  Identities=23%  Similarity=0.251  Sum_probs=80.4

Q ss_pred             EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCC-cccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273          117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP-SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS  195 (623)
Q Consensus       117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  195 (623)
                      ++++++|.++ .+|..+.   +.++.|++++|.+++..+ ..|.++++|++|++++|.++ .++...|.++++|++|+++
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence            4555555554 4554432   244555555555554432 23455555555555555555 4444444555555555555


Q ss_pred             cCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273          196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       196 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      +|.+.+..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555544444555555555555555555555555555555555555555555555555555555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.4e-17  Score=162.12  Aligned_cols=152  Identities=23%  Similarity=0.369  Sum_probs=114.5

Q ss_pred             ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273          327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  406 (623)
Q Consensus       327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  406 (623)
                      +..+++|++|++++|++++..+  +..+++|+.|++++|.+.+ . ..+..+++|+.|++++|++.+.  ..+.      
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~------  131 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLV------  131 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhc------
Confidence            5667778888888887775444  7777888888888888764 2 3477788888888888887643  1122      


Q ss_pred             CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                                      .+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       132 ----------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          132 ----------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ----------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ----------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence                            245788888888888754  567888889999999998886654  888889999999999888


Q ss_pred             ccCccccccCCCCCeeecccCccccc
Q 038273          487 GKIPPQLVELNVLAVFSVAHNNLSGK  512 (623)
Q Consensus       487 ~~~p~~~~~l~~L~~L~l~~N~l~~~  512 (623)
                      +. | .+..+++|+.|++++|+++..
T Consensus       192 ~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          192 DL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             BC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             CC-h-hhccCCCCCEEECcCCcccCC
Confidence            53 3 478888899999999888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.7e-17  Score=160.15  Aligned_cols=188  Identities=22%  Similarity=0.298  Sum_probs=103.8

Q ss_pred             CcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEec
Q 038273           66 LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNL  145 (623)
Q Consensus        66 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L  145 (623)
                      +..+.+..+.+++..+   ...+++|+.|++++|.+++.  ..+..+++|++|++++|.+. .++. + ..+++|++|++
T Consensus        26 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l-~~l~~L~~L~l   97 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred             HHHHHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-c-ccCCCCCEEEC
Confidence            3344455555553222   24567778888877777654  23666777777777777776 3443 3 33567777777


Q ss_pred             ccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCcc
Q 038273          146 SRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTG  225 (623)
Q Consensus       146 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  225 (623)
                      ++|.+++ + ..+..+++|++|++++|+++ .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++
T Consensus        98 ~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           98 DENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCcCCC-C-hhhccCCCCCEEECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            7777663 2 23666677777777777666 4432  34566666666666665543  344445555555555555543


Q ss_pred             ccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273          226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       226 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      ..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            322  44455555555555544432 1 2444444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=7.4e-17  Score=151.14  Aligned_cols=153  Identities=19%  Similarity=0.192  Sum_probs=74.7

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      .-+.++++++++. .+|..+.  ++|++|++++|.+++ ++...+..+++|++|++++|+++...+..|..+++|++|++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            3444555554443 2333222  445555555555552 22222345555555555555554444444455555555555


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.++ .+|...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++...+..+++|++|++++|.+.
T Consensus        96 s~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           96 GTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555555 344443333455555555555555 34444555555555555555555 444444445555555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.9e-18  Score=171.90  Aligned_cols=287  Identities=13%  Similarity=0.061  Sum_probs=159.9

Q ss_pred             CCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCc--CcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhc----
Q 038273           63 QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLS--GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVY----  136 (623)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~----  136 (623)
                      +.+++.|+++++- ...-...+...+++|++|+|++|++.  ......   ++.++.+.+..+    .+|...+..    
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence            5567777777542 11111122122677888888888776  222222   222445555544    456666666    


Q ss_pred             ----CCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc----Cccccccccc
Q 038273          137 ----FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS----LHGQLFYKKI  208 (623)
Q Consensus       137 ----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~  208 (623)
                          +++|+.+++.+ .++.+.+.+|.+|++|+.+++.+|.+. .++...|.++.++..+......    ........|.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                67777777777 676666677777778888888777777 7777777766666666554421    1222233444


Q ss_pred             cCCCCC-EEecccccC-ccccCccCcCCCCCcEEECcCCcCccccchhc-cCCCCCCEEECccccccccccccccCCCCC
Q 038273          209 YLRKLA-RLHLDANYC-TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL-GNLSSLNDIMMAINHLQGPIPLEFCQLNYL  285 (623)
Q Consensus       209 ~~~~L~-~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  285 (623)
                      ++..|+ .+.+..... .......-....+++.+.+.++-.. .....+ ..+++|+++++++|.+..+...+|.++++|
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            455554 333322110 0000000112234444444433111 111111 124556666666555555555555566566


Q ss_pred             cEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCcee-EEeCCCCcCCCCCchhhhccccCcEEEccc
Q 038273          286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV-TLDLSYNSFSGNIPYWIERLTRLRYLILAN  364 (623)
Q Consensus       286 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  364 (623)
                      +.+++.+| +                        ..++..+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++
T Consensus       253 ~~l~l~~n-i------------------------~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          253 LKIKLPHN-L------------------------KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             CEEECCTT-C------------------------CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred             CEEECCcc-c------------------------ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence            66555554 3                        234555677777777 777776 66656667777777788887777


Q ss_pred             ccccccCchhhcCCCCCCEEEc
Q 038273          365 NNLEGEVPNQLCRLKQLRLIDL  386 (623)
Q Consensus       365 n~l~~~~~~~~~~l~~L~~L~l  386 (623)
                      |.+....+.+|.++++|+.+..
T Consensus       307 n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          307 DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             SCCCEECTTTTCTTCCCCEEEC
T ss_pred             CccCccchhhhcCCcchhhhcc
Confidence            7777666677777777777653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=7.7e-18  Score=179.76  Aligned_cols=167  Identities=22%  Similarity=0.291  Sum_probs=87.2

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      +|++|++++|.+... + .+..+++|++|+|++|.+. .++.  +..+++|+.|+|++|.+++.  ..+..+++|++|++
T Consensus        44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL  116 (605)
T ss_dssp             TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence            556666666655432 2 3555666666666666655 2333  35566666666666655542  24555556666666


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .++ .+.. +++|+.|+|++|.+++.  ..+..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+.
T Consensus       117 s~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          117 EHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             TTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-Cchh--hccCCCCCEEECcCCCCC
Confidence            666555 232 2222 45555555555555532  34555555555555555555 2322  344555555555555554


Q ss_pred             cccccccccCCCCCEEecccccCc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +.  ..+..+++|+.|++++|.+.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CC--hHHccCCCCCEEEccCCcCc
Confidence            32  23444555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=4e-17  Score=174.28  Aligned_cols=188  Identities=18%  Similarity=0.232  Sum_probs=91.9

Q ss_pred             ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273           42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS  121 (623)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (623)
                      +..+.+..+.+....+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|++++..+  +..+++|+.|+|+
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            4444455555443222  345566666666666665 4442  3556666666666666655433  5555566666666


Q ss_pred             CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273          122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      +|.+. .+| .+.. +++|+.|+|++|.+.+.  ..+..+++|+.|++++|.++ .++  .+..+++|+.|++++|.+.+
T Consensus        96 ~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           96 ENKIK-DLS-SLKD-LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             SSCCC-CCT-TSTT-CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCSSCCCC
T ss_pred             CCCCC-CCh-hhcc-CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC-Cch--hhcccCCCCEEECcCCcCCC
Confidence            66555 233 2222 44555555555555431  23445555555555555554 331  22344555555555554444


Q ss_pred             ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc
Q 038273          202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY  248 (623)
Q Consensus       202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  248 (623)
                      ..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            333  44444444444444444432  22444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=7.9e-18  Score=153.00  Aligned_cols=121  Identities=23%  Similarity=0.377  Sum_probs=110.7

Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273          425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV  504 (623)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  504 (623)
                      +++++|++++|.++ .+|..+..+++|+.|++++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            48999999999998 77889999999999999999999988899999999999999999999988889999999999999


Q ss_pred             ccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 038273          505 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  551 (623)
Q Consensus       505 ~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~~  551 (623)
                      ++|+++...+..+..+++|+.+++++|||.|     +|+..|...|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C-----~c~l~~l~~~~  151 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC-----DCNMQWLSDWV  151 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHHHH
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeec-----CCcCHHHHHHH
Confidence            9999998888888899999999999999999     66655554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=3.2e-17  Score=149.02  Aligned_cols=132  Identities=20%  Similarity=0.312  Sum_probs=117.3

Q ss_pred             CEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCc-cccccccCCeeeCCCCc
Q 038273          382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPP-QIGKLTSIRALNFSHNN  460 (623)
Q Consensus       382 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~  460 (623)
                      +.+++++|.+. .+|..+                        ..++++|++++|.+++..+. .+..+++|++|++++|.
T Consensus        11 ~~l~~s~~~l~-~ip~~~------------------------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~   65 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDI------------------------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC------------------------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CEEEcCCCCcC-cCccCC------------------------CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence            68888888885 334322                        23889999999999977664 48999999999999999


Q ss_pred             ccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273          461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  538 (623)
Q Consensus       461 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~  538 (623)
                      +++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|+.+++++||+.|+|+
T Consensus        66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999999999999999999999999989889999999999999999999999999999999999999999999543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=7.3e-17  Score=160.45  Aligned_cols=257  Identities=12%  Similarity=0.096  Sum_probs=151.1

Q ss_pred             cccEEEccCCCCC--CCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC--------CCCCCEEEccCCcCcCcCCCCCC
Q 038273           41 QLESVKLSGSGIH--ATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN--------NTNLNTLVLRNNSLSGPFRMPIQ  110 (623)
Q Consensus        41 ~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~  110 (623)
                      +|++|+|++|++.  ...+.   .++.++.+.+..+    .+|+..|.+        +++|+.+++.+ .++.+...+|.
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             cCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            6777777777765  22221   2222444444444    456666777        88888888877 77777777788


Q ss_pred             CCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCc----ccccCCcccCCCCCCC-EEEccCCcCCcccchHHhhC
Q 038273          111 PHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRND----FNGSIPSSIGDMNSLK-FLDLSHNQLTGEIPEHLVIG  185 (623)
Q Consensus       111 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~  185 (623)
                      ++++|+++++++|.+. .++...+..+.++..+......    .......+|.++..|+ .+.+...   +.++..++..
T Consensus       122 ~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~  197 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKA  197 (329)
T ss_dssp             TCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHT
T ss_pred             cCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhc
Confidence            8888888888888777 6666666656666666655532    1223344566666666 4444432   1444444432


Q ss_pred             ---CCCCCEEEcccCcCcccccccc-ccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCC
Q 038273          186 ---CFNLEYLVLSENSLHGQLFYKK-IYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSL  261 (623)
Q Consensus       186 ---l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  261 (623)
                         ..+++.+.+.++-.. .....+ ..+++|+.+++++|+++.+.+.+|.++++|+.+++.+| ++...+.+|.++++|
T Consensus       198 ~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L  275 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL  275 (329)
T ss_dssp             TCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence               334455555443211 111111 12566666677666666555666666667777777665 555556666666667


Q ss_pred             C-EEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEE
Q 038273          262 N-DIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVH  312 (623)
Q Consensus       262 ~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~  312 (623)
                      + .+++.. .+..+.+.+|.++++|+.+++++|.+....+..+ .+++|+.++
T Consensus       276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            6 666666 5555556666667777777766666664444333 456666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=7.3e-17  Score=147.55  Aligned_cols=151  Identities=16%  Similarity=0.261  Sum_probs=75.0

Q ss_pred             CCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCC
Q 038273          330 RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD  409 (623)
Q Consensus       330 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~  409 (623)
                      +++|+.|++++|.++ .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+..        
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------  110 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG--------  110 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT--------
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC--------
Confidence            345555555555555 223 3555555555555555443  1224555555555555555554433333322        


Q ss_pred             CCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCc-ccccCCccCCCCCCCcEEECCCCccccc
Q 038273          410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN-LTGVIPVSFSNLKQVESLDVSYNNLNGK  488 (623)
Q Consensus       410 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  488 (623)
                                    +++|++|++++|.+++..|..+..+++|++|++++|. ++. +| .+..+++|+.|++++|++++.
T Consensus       111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh
Confidence                          2355555555555554445555555555555555554 432 22 355555555555555555532


Q ss_pred             CccccccCCCCCeeecccCccc
Q 038273          489 IPPQLVELNVLAVFSVAHNNLS  510 (623)
Q Consensus       489 ~p~~~~~l~~L~~L~l~~N~l~  510 (623)
                       + .+..+++|++|++++|++.
T Consensus       175 -~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          175 -R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -T-TGGGCSSCCEEEECBC---
T ss_pred             -H-HhccCCCCCEEEeeCcccC
Confidence             2 4455555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=5e-17  Score=155.68  Aligned_cols=166  Identities=20%  Similarity=0.231  Sum_probs=108.2

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ++..++++++.+.+. + .+..+++|++|++++|.++ .++ . +..+++|++|++++|++++..+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            566667777776543 2 4667777888888877776 565 2 4677778888887777776544  777777777777


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.++ .+|....   ++|+.|++++|.+++.  ..+..+++|++|++++|+++ .++  .+..+++|++|++++|.+.
T Consensus        93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCc
Confidence            777776 4443222   5777777777777642  34667777777777777776 454  2355666777777666665


Q ss_pred             cccccccccCCCCCEEecccccCc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +.  ..+..+++|+.|++++|.+.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ch--HHhccCCCCCEEeCCCCccc
Confidence            44  44455555555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=1.8e-15  Score=154.34  Aligned_cols=152  Identities=13%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCc
Q 038273          228 PKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHST  307 (623)
Q Consensus       228 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  307 (623)
                      ..+|.++++|+.+.+.++. .......|.++++|+.+.+..+ +..+...+|..+..|+.+.+..+... ..........
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~  231 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG  231 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence            3456666666666665442 2344555666666666666554 33344556666677776666554332 2233334556


Q ss_pred             ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273          308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS  387 (623)
Q Consensus       308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  387 (623)
                      |+.+.+....  ..+...+|..+..++.+.+..+... .....|..+..++.+......+.   ..+|..+.+|+.+.+.
T Consensus       232 l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          232 VKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred             CceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence            6666655432  2334445667777777777655433 44455666666666666554332   2345666666666664


Q ss_pred             C
Q 038273          388 N  388 (623)
Q Consensus       388 ~  388 (623)
                      +
T Consensus       306 ~  306 (394)
T 4fs7_A          306 D  306 (394)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=2.6e-15  Score=152.28  Aligned_cols=262  Identities=12%  Similarity=0.138  Sum_probs=204.2

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      .++.+.+.+ .+...-..+|.++ +|+.+++..+ ++ .++...|.++ +|+.+.+.. .++.+...+|.++++|+.+++
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            677777764 3554556677775 7999998766 55 6777777774 799999886 677777788999999999999


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .++...+. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++ .++..+|.+ .+|+.+.+. +.+.
T Consensus       188 ~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          188 SKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             TTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             CCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCcc
Confidence            988888 78888777 578999999854 66677788999999999999875 55 788888876 789999984 4566


Q ss_pred             cccccccccCCCCCEEecccccCc-----cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCT-----GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI  275 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  275 (623)
                      .....+|.++++|+.+++.++.+.     .+.+.+|.+|++|+.+.+.+ .++.....+|.+|++|+.+.+..+ +..+.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            677788889999999999887654     46667899999999999984 477677788999999999999655 66677


Q ss_pred             cccccCCCCCcEEeCcCccceeeCCCCC-CC-CcccEEEccCccc
Q 038273          276 PLEFCQLNYLEILDLSENNISGTLPSCS-SH-STIQQVHLSKNML  318 (623)
Q Consensus       276 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~L~l~~n~l  318 (623)
                      ..+|.++ +|+.+++++|......+..+ .+ ..++.+++..+.+
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            7889888 99999999987764444333 23 4678888877654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.5e-16  Score=145.48  Aligned_cols=148  Identities=17%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEec
Q 038273          139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHL  218 (623)
Q Consensus       139 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  218 (623)
                      +|+.|++++|.++ .+| .+..+++|++|++++|.++ .++  .+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            4444444444444 222 3444444444444444433 222  1233444444444444444434444444444444444


Q ss_pred             ccccCccccCccCcCCCCCcEEECcCCc-CccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273          219 DANYCTGEIPKSLSNCSPLEGLYMSDNN-LYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI  295 (623)
Q Consensus       219 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  295 (623)
                      ++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|+.|++++|.+.+..  .+..+++|+.|++++|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            4444444334444444555555555554 332 22 3444455555555555444321  344444555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=7.2e-17  Score=154.56  Aligned_cols=167  Identities=17%  Similarity=0.213  Sum_probs=118.3

Q ss_pred             ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273          308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS  387 (623)
Q Consensus       308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  387 (623)
                      +..++++++.+.+..   .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|++.+..+  +..+++|+.|+++
T Consensus        21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            344444444443222   25566778888888887774 33 57777888888888888875433  7788888888888


Q ss_pred             CCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCc
Q 038273          388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV  467 (623)
Q Consensus       388 ~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  467 (623)
                      +|++++..+. .                       . ++|+.|++++|.+++.  +.+..+++|+.|++++|.+++.  .
T Consensus        94 ~N~l~~l~~~-~-----------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~  144 (263)
T 1xeu_A           94 RNRLKNLNGI-P-----------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--V  144 (263)
T ss_dssp             SSCCSCCTTC-C-----------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--G
T ss_pred             CCccCCcCcc-c-----------------------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--h
Confidence            8887643211 0                       0 4788888888888753  3577888888888888888765  2


Q ss_pred             cCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccccc
Q 038273          468 SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGK  512 (623)
Q Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  512 (623)
                      .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            677888888888888888865  5677888888888888888755

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=2.5e-15  Score=152.36  Aligned_cols=265  Identities=13%  Similarity=0.106  Sum_probs=214.7

Q ss_pred             CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273           62 NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV  141 (623)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  141 (623)
                      -+..++.+.+.. .++ .++...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++...+..+++|+
T Consensus       111 ~~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred             ecCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence            457888998875 455 6788778875 7999999876 777777888884 799999986 566 77778888899999


Q ss_pred             EEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccc
Q 038273          142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN  221 (623)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  221 (623)
                      .+++.+|+++.....+|. +.+|+.+.+..+ ++ .++...|.++++|+.+++..+ +......+|.+ .+|+.+.+. +
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~  257 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N  257 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence            999999999977777777 689999999855 76 899999999999999999875 66666777877 789999994 4


Q ss_pred             cCccccCccCcCCCCCcEEECcCCcCc-----cccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273          222 YCTGEIPKSLSNCSPLEGLYMSDNNLY-----GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       222 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      .++.+...+|.++++|+.+.+.++.+.     ...+..|.+|++|+.+.+. +.+..+...+|.++++|+.+.+..+ ++
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            566677889999999999999887664     4667889999999999999 4577777889999999999999765 55


Q ss_pred             eeCCCCC-CCCcccEEEccCccccccCCCCCccCCC-ceeEEeCCCCcC
Q 038273          297 GTLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRS-SIVTLDLSYNSF  343 (623)
Q Consensus       297 ~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l  343 (623)
                      ......+ .+ +|+.+.+.+|... .+...+|.+++ +++.+.+..+.+
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHH
Confidence            4545555 45 9999999999874 45556688774 788888876654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=4.1e-19  Score=188.52  Aligned_cols=202  Identities=16%  Similarity=0.145  Sum_probs=98.3

Q ss_pred             CCCCCcEEECcCCcCccccchhccCCCCCCEEECcccc-------------ccccccccccCCCCCcEEe-CcCccceee
Q 038273          233 NCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH-------------LQGPIPLEFCQLNYLEILD-LSENNISGT  298 (623)
Q Consensus       233 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~~~~~  298 (623)
                      .+++|+.|++++|+++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            3455555555555554 445555555555555554432             2334445555566666665 4444332  


Q ss_pred             CCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCC
Q 038273          299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL  378 (623)
Q Consensus       299 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  378 (623)
                              .|+.+.+.+|.+... +      ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+..+
T Consensus       424 --------~L~~l~l~~n~i~~l-~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 --------DLRSKFLLENSVLKM-E------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             --------HHHHHHHHHHHHHHH-H------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             --------hhhhhhhhccccccc-C------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                    334444444443211 1      0124555555555553 233 444555555555555554 344444444


Q ss_pred             CCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCC
Q 038273          379 KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSH  458 (623)
Q Consensus       379 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  458 (623)
                      ++|+.|++++|+++                                              + +| .+..+++|+.|+|++
T Consensus       486 ~~L~~L~Ls~N~l~----------------------------------------------~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          486 RCLEVLQASDNALE----------------------------------------------N-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TTCCEEECCSSCCC----------------------------------------------C-CG-GGTTCSSCCEEECCS
T ss_pred             CCCCEEECCCCCCC----------------------------------------------C-Cc-ccCCCCCCcEEECCC
Confidence            44444444444443                                              2 23 455555566666666


Q ss_pred             CcccccC-CccCCCCCCCcEEECCCCcccccCccc---cccCCCCCeee
Q 038273          459 NNLTGVI-PVSFSNLKQVESLDVSYNNLNGKIPPQ---LVELNVLAVFS  503 (623)
Q Consensus       459 n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~  503 (623)
                      |.+++.. |..+..+++|+.|+|++|++++.+|..   +..+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            6655544 555555666666666666655443321   22355555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.7e-16  Score=144.32  Aligned_cols=129  Identities=26%  Similarity=0.369  Sum_probs=70.3

Q ss_pred             eEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCch-hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273          334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN-QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG  412 (623)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~  412 (623)
                      +.++++++.++ .+|..+.  +++++|++++|.+.+..+. .+..+++|++|++++|++++..|..+...          
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------   77 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence            44555555554 2333222  2555566666655544332 35555555666665555554444443322          


Q ss_pred             CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccc
Q 038273          413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG  487 (623)
Q Consensus       413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  487 (623)
                                  ++|++|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++..
T Consensus        78 ------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           78 ------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence                        255555555555555555555666666666666666666666666666666666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.1e-19  Score=190.71  Aligned_cols=203  Identities=17%  Similarity=0.065  Sum_probs=107.2

Q ss_pred             CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273           61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL  140 (623)
Q Consensus        61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  140 (623)
                      ..+++|+.|++++|.++ .+|..+ +.+++|+.|++++|......+.           .+..+...+..|..+.. +++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~-l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQY-FSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHH-HHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHH-HHhc
Confidence            55677777777777776 677665 6777777777755531000000           00001122233333333 3455


Q ss_pred             cEEe-cccC-------------cccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccc
Q 038273          141 VYLN-LSRN-------------DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYK  206 (623)
Q Consensus       141 ~~L~-L~~n-------------~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  206 (623)
                      +.|+ ++.|             .++...+      ..|+.|++++|.++ .+|.  +..+++|+.|++++|.++ .+|..
T Consensus       412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          412 KAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             ccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchh
Confidence            5555 3333             3321111      13566666666665 4554  345666666666666665 44555


Q ss_pred             cccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCcccc-chhccCCCCCCEEECcccccccccccc---ccCC
Q 038273          207 KIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI-PAWLGNLSSLNDIMMAINHLQGPIPLE---FCQL  282 (623)
Q Consensus       207 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~l  282 (623)
                      +..+++|+.|++++|.+++ +| .++.+++|+.|++++|++++.. |..++.+++|+.|++++|.+.+..+..   +..+
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence            5666666666666666654 33 4566666666666666666554 556666666666666666665443321   2235


Q ss_pred             CCCcEEe
Q 038273          283 NYLEILD  289 (623)
Q Consensus       283 ~~L~~L~  289 (623)
                      ++|+.|+
T Consensus       560 p~L~~L~  566 (567)
T 1dce_A          560 PSVSSIL  566 (567)
T ss_dssp             TTCSEEE
T ss_pred             cccCccC
Confidence            5555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=5.7e-17  Score=177.60  Aligned_cols=195  Identities=16%  Similarity=0.162  Sum_probs=100.3

Q ss_pred             CCCcEEECcCCccccccccccCCCCCC--cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCC
Q 038273           14 SKLKVFSGECNEIFVESESSHSMTPKF--QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNL   91 (623)
Q Consensus        14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (623)
                      ++++.|+|..+.+..............  ++..++++.|.+. ..+..+..+++|++|+|++|.+. .+|..++ .+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFL  249 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCC
Confidence            557777777766554321110001000  2222333333332 34667777888888888888877 6777764 77888


Q ss_pred             CEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccC
Q 038273           92 NTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH  171 (623)
Q Consensus        92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  171 (623)
                      ++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..|.++++|++|+|++
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            88888888887 56677778888888888888887 77777766 668888888888877 5677788888888888888


Q ss_pred             CcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccc
Q 038273          172 NQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN  221 (623)
Q Consensus       172 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  221 (623)
                      |.+++.+|..+......+..+++++|.+.+..|..      |+.|+++.|
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            88875555544321112223567777776655543      344455544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=8.9e-15  Score=149.19  Aligned_cols=317  Identities=13%  Similarity=0.109  Sum_probs=232.4

Q ss_pred             CCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChh
Q 038273           53 HATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLE  132 (623)
Q Consensus        53 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  132 (623)
                      +..-..+|.+|.+|+.+++..+ ++ .+++..|.++.+|+.+++..+ ++.....+|.++++|+.+.+..+ +. .+...
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~  134 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE  134 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence            3345577889999999999744 66 788888899999999999765 66666778888999988777654 33 45555


Q ss_pred             hhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCC
Q 038273          133 IGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK  212 (623)
Q Consensus       133 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  212 (623)
                      .+..+.. ....... ........+|.++++|+.+.+.++ +. .++...|.++.+|+.+++..+ +.......|.++..
T Consensus       135 aF~~~~~-~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~-~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          135 AFKGCDF-KEITIPE-GVTVIGDEAFATCESLEYVSLPDS-ME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTCCC-SEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeecccc-cccccCc-cccccchhhhcccCCCcEEecCCc-cc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            5554533 3333322 223345678999999999999765 34 788888889999999998765 55566678888889


Q ss_pred             CCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcC
Q 038273          213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSE  292 (623)
Q Consensus       213 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  292 (623)
                      |+.+.+..+...  +.+......+|+.+.+... ++......+..+..++.+.+..+... +....|..+..++.+....
T Consensus       210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            998888766433  2233445578888888654 34455667888899999998876544 6667788888898888776


Q ss_pred             ccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCc
Q 038273          293 NNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP  372 (623)
Q Consensus       293 n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  372 (623)
                      ..+.  ......+.+|+.+.+.++ + ..+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.....
T Consensus       286 ~~i~--~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  359 (394)
T 4fs7_A          286 VIVP--EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA  359 (394)
T ss_dssp             SEEC--TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             eeec--cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence            5321  222336888999988765 3 4566777999999999999754 66566778999999999999876 665667


Q ss_pred             hhhcCCCCCCEEEccCC
Q 038273          373 NQLCRLKQLRLIDLSNN  389 (623)
Q Consensus       373 ~~~~~l~~L~~L~l~~n  389 (623)
                      .+|.++++|+.+++..+
T Consensus       360 ~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTBTTCTTCCEEEEEGG
T ss_pred             HHhhCCCCCCEEEECCC
Confidence            88999999999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.5e-15  Score=136.14  Aligned_cols=113  Identities=20%  Similarity=0.228  Sum_probs=104.1

Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273          425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV  504 (623)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  504 (623)
                      ++++.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            48999999999999777778899999999999999999888888999999999999999999888888899999999999


Q ss_pred             ccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          505 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       505 ~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      ++|++++..+..+..+++|+.+++++||+.|++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999999887777788999999999999999944

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.2e-15  Score=133.94  Aligned_cols=86  Identities=21%  Similarity=0.227  Sum_probs=58.1

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC-ccCCCCCCCcEEECCCCcccccCc---cccccCCCCCe
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP-VSFSNLKQVESLDVSYNNLNGKIP---PQLVELNVLAV  501 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~  501 (623)
                      +|++|++++|.+++.+|..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++++..+   ..+..+++|++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            45555555555554455666667777777777777775422 567777788888888887775544   46777778888


Q ss_pred             eecccCcccc
Q 038273          502 FSVAHNNLSG  511 (623)
Q Consensus       502 L~l~~N~l~~  511 (623)
                      |++++|.+..
T Consensus       152 L~l~~n~~~~  161 (168)
T 2ell_A          152 LDGYDREDQE  161 (168)
T ss_dssp             ETTEETTSCB
T ss_pred             ecCCCCChhh
Confidence            8888877663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2e-15  Score=134.19  Aligned_cols=137  Identities=24%  Similarity=0.312  Sum_probs=108.3

Q ss_pred             CCceeEEeCCCCcCC-CCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCC
Q 038273          330 RSSIVTLDLSYNSFS-GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG  408 (623)
Q Consensus       330 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~  408 (623)
                      .+++++|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            467888888888887 55676677888888888888888755  66788888888888888887766655443       


Q ss_pred             CCCCCCCCccccCCCCCCccEEEccCCcccccC-CccccccccCCeeeCCCCcccccCC---ccCCCCCCCcEEECCCCc
Q 038273          409 DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI-PPQIGKLTSIRALNFSHNNLTGVIP---VSFSNLKQVESLDVSYNN  484 (623)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~  484 (623)
                                     +++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.
T Consensus        94 ---------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           94 ---------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ---------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ---------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                           348888888888888542 2678899999999999999996655   578999999999999999


Q ss_pred             ccccCcc
Q 038273          485 LNGKIPP  491 (623)
Q Consensus       485 l~~~~p~  491 (623)
                      +. ..|+
T Consensus       159 ~~-~~~~  164 (168)
T 2ell_A          159 DQ-EAPD  164 (168)
T ss_dssp             SC-BCCS
T ss_pred             hh-hccc
Confidence            87 3443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=2e-16  Score=173.27  Aligned_cols=117  Identities=25%  Similarity=0.305  Sum_probs=56.4

Q ss_pred             hhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCC
Q 038273           85 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL  164 (623)
Q Consensus        85 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  164 (623)
                      +..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..|.++++|
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             hccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            3445555555555555442 3333334555555555555555 45544433 445555555555555 344445555555


Q ss_pred             CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcccccccc
Q 038273          165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK  207 (623)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  207 (623)
                      ++|+|++|.++ .+|.. +..+++|++|+|++|.+.+..+..+
T Consensus       296 ~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             SEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCCCChHHH
Confidence            55555555554 44444 2445555555555555544444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.2e-14  Score=131.99  Aligned_cols=87  Identities=22%  Similarity=0.294  Sum_probs=62.8

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      +|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            44445555555554555667777788888888888877777778888888888888888886666667778888888888


Q ss_pred             cCccccc
Q 038273          506 HNNLSGK  512 (623)
Q Consensus       506 ~N~l~~~  512 (623)
                      +|++.+.
T Consensus       135 ~N~~~C~  141 (193)
T 2wfh_A          135 ANPLYCD  141 (193)
T ss_dssp             SSCEECS
T ss_pred             CCCeecC
Confidence            8887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.1e-15  Score=129.97  Aligned_cols=128  Identities=20%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             ccCcEEEccccccc-ccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEcc
Q 038273          355 TRLRYLILANNNLE-GEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLS  433 (623)
Q Consensus       355 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  433 (623)
                      ++++.|++++|.+. +.+|..+..+++|+.|++++|.+++.  ..+.                      .+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~----------------------~l~~L~~L~Ls   72 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP----------------------KLNKLKKLELS   72 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC----------------------CCTTCCEEECC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh----------------------cCCCCCEEECC
Confidence            45666666666665 44555556666666666666666543  1111                      23466666666


Q ss_pred             CCcccccCCccccccccCCeeeCCCCccccc-CCccCCCCCCCcEEECCCCcccccCc---cccccCCCCCeeeccc
Q 038273          434 CNKLTGEIPPQIGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNGKIP---PQLVELNVLAVFSVAH  506 (623)
Q Consensus       434 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~  506 (623)
                      +|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|++|++++
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            6666655666666677777777777777753 23667777777777777777775554   4667777777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=6e-15  Score=130.95  Aligned_cols=109  Identities=24%  Similarity=0.257  Sum_probs=99.0

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA  505 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  505 (623)
                      ..+.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3568999999998 5676664  799999999999999889999999999999999999998888888999999999999


Q ss_pred             cCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      +|++++..+..+..+++|+.+++++||+.|+|
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999888888889999999999999999944

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=8.1e-15  Score=127.31  Aligned_cols=127  Identities=22%  Similarity=0.250  Sum_probs=76.0

Q ss_pred             CCCcEEEccCCCCC-CcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE
Q 038273           64 HDLEYVDFSDSNLK-GEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY  142 (623)
Q Consensus        64 ~~L~~L~ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  142 (623)
                      ++|++|++++|.++ +.+|.. +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence            34444444444444 334432 24445555555555555443  44556666666666666666445544443 567777


Q ss_pred             EecccCccccc-CCcccCCCCCCCEEEccCCcCCcccch---HHhhCCCCCCEEEcc
Q 038273          143 LNLSRNDFNGS-IPSSIGDMNSLKFLDLSHNQLTGEIPE---HLVIGCFNLEYLVLS  195 (623)
Q Consensus       143 L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~  195 (623)
                      |++++|.+++. .+..+..+++|++|++++|+++ .++.   ..+..+++|++|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            77777777753 2366777778888888888777 5554   455677777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=4.5e-14  Score=126.54  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             CCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEc
Q 038273          115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL  194 (623)
Q Consensus       115 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  194 (623)
                      .+.++++++.+. .+|..+.   ++|+.|++++|++++..+..+.++++|++|++++|.++ .++...+..+++|++|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence            355666666666 5664443   46777777777777555556677777777777777776 666655566777777777


Q ss_pred             ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc
Q 038273          195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN  250 (623)
Q Consensus       195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  250 (623)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            77766655555555666666666666666655445556666666666666666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=1.9e-14  Score=128.08  Aligned_cols=107  Identities=20%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             cEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccC
Q 038273          428 YGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN  507 (623)
Q Consensus       428 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N  507 (623)
                      +.+++++|.++ .+|..+.  ++|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67999999997 6777664  79999999999999998999999999999999999999877777899999999999999


Q ss_pred             cccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          508 NLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       508 ~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      ++++..+..+..+++|+.+++++||+.|.|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            999887777889999999999999999943

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=4.2e-14  Score=126.52  Aligned_cols=135  Identities=17%  Similarity=0.177  Sum_probs=101.6

Q ss_pred             ccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCC
Q 038273           59 FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFP  138 (623)
Q Consensus        59 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  138 (623)
                      .+.++++|++|++++|.++ .+|. +....++|++|++++|.+++.  ..+..+++|++|++++|.++ .+|..++..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            3556778888888888887 5554 323344888888888888765  57788888888888888888 56666645578


Q ss_pred             CccEEecccCcccccCCc--ccCCCCCCCEEEccCCcCCcccchH---HhhCCCCCCEEEcccCcCc
Q 038273          139 RLVYLNLSRNDFNGSIPS--SIGDMNSLKFLDLSHNQLTGEIPEH---LVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       139 ~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~  200 (623)
                      +|++|++++|.++. +|.  .+..+++|++|++++|+++ .+|..   ++..+++|+.|+++.|...
T Consensus        89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888888888863 454  6788888888888888887 67765   4567888888888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=1.9e-12  Score=131.86  Aligned_cols=113  Identities=12%  Similarity=0.030  Sum_probs=56.7

Q ss_pred             CcCCCCCCCCC-CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCc---ccccCCcccCCCCCCCEEEccCCcCCccc
Q 038273          103 GPFRMPIQPHW-HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRND---FNGSIPSSIGDMNSLKFLDLSHNQLTGEI  178 (623)
Q Consensus       103 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  178 (623)
                      .+...+|.++. .|+.+.+..+ ++ .|....|..+.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++ .+
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I  128 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EI  128 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred             EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-ee
Confidence            33445555553 4666666543 44 4555555555566666655442   44344455555555555555433 33 45


Q ss_pred             chHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccc
Q 038273          179 PEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA  220 (623)
Q Consensus       179 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  220 (623)
                      +...|.++.+|+.+.+..+ +.......|..+..|+.+.+..
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             hhhhhhhhcccccccccce-eeeecccceecccccccccccc
Confidence            5555555555555555432 2223334444455555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4e-14  Score=126.65  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             hhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEE
Q 038273          351 IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV  430 (623)
Q Consensus       351 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L  430 (623)
                      +..+++|+.|++++|.+.. ++......++|+.|++++|.+++.  ..+.                      .+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~----------------------~l~~L~~L   69 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFP----------------------LLRRLKTL   69 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCC----------------------CCSSCCEE
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccc----------------------cCCCCCEE
Confidence            3445667777777777763 343233334777777777776543  1121                      23466666


Q ss_pred             EccCCcccccCCccccccccCCeeeCCCCcccccCCc--cCCCCCCCcEEECCCCcccccCcc----ccccCCCCCeeec
Q 038273          431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV--SFSNLKQVESLDVSYNNLNGKIPP----QLVELNVLAVFSV  504 (623)
Q Consensus       431 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~l  504 (623)
                      ++++|.+++..+..+..+++|++|++++|.++. +|.  .+..+++|+.|++++|++. ..|.    .+..+++|++|++
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence            777766665444444666666667776666653 333  5666666666666666666 3343    2566666666666


Q ss_pred             ccCccc
Q 038273          505 AHNNLS  510 (623)
Q Consensus       505 ~~N~l~  510 (623)
                      ++|...
T Consensus       148 ~~n~~~  153 (176)
T 1a9n_A          148 QKVKLK  153 (176)
T ss_dssp             EECCHH
T ss_pred             CcCCHH
Confidence            666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.47  E-value=6.7e-12  Score=127.83  Aligned_cols=334  Identities=10%  Similarity=0.108  Sum_probs=190.0

Q ss_pred             cCChHHhhCCC-CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCC---CCCCCChhhhhcCCCccEEecccCcccccC
Q 038273           79 EFPNWLLENNT-NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF---FQGNIPLEIGVYFPRLVYLNLSRNDFNGSI  154 (623)
Q Consensus        79 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~---l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~  154 (623)
                      .|++..|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..+.   ++ .+....+..+.+|+.+.+..+ ++...
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence            56666677774 5999999764 777778889999999999988763   55 677777777888888887654 45466


Q ss_pred             CcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCC
Q 038273          155 PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC  234 (623)
Q Consensus       155 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  234 (623)
                      ..+|..+.+|+.+.+..+ +. .++...|..+.+|+.+.+..+ +.......|.+ ..|+.+.+..+.. .....+|..+
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c  204 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSEC  204 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTC
T ss_pred             hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhc
Confidence            778889999999999754 44 788888888999999988754 44444445543 4577776655422 2444566666


Q ss_pred             CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEcc
Q 038273          235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS  314 (623)
Q Consensus       235 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  314 (623)
                      .+++................+.......           .....+.....+..+.+...              +      
T Consensus       205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~--------------v------  253 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG--------------V------  253 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT--------------E------
T ss_pred             cccceecccccccccccceeeccccccc-----------ccccccccccccceEEcCCc--------------c------
Confidence            6666665544332211000000000000           00000111112222222110              0      


Q ss_pred             CccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCC
Q 038273          315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ  394 (623)
Q Consensus       315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  394 (623)
                           ..+...+|..|..|+.+.+..+... +...+|.++++|+.+.+.. .+......+|.++.+|+.+++..+ +   
T Consensus       254 -----~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v---  322 (394)
T 4gt6_A          254 -----ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I---  322 (394)
T ss_dssp             -----EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C---
T ss_pred             -----eEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c---
Confidence                 1223344666677777666544332 4445566666666666642 343344556666666666666432 1   


Q ss_pred             CCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCC
Q 038273          395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQ  474 (623)
Q Consensus       395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  474 (623)
                                                                 +.....+|.++.+|+.+.+..+ ++.+...+|.++++
T Consensus       323 -------------------------------------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          323 -------------------------------------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             -------------------------------------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             -------------------------------------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence                                                       1123345666677777777544 55455567777777


Q ss_pred             CcEEECCCCcccccCccccccCCCCCeeecccCcc
Q 038273          475 VESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL  509 (623)
Q Consensus       475 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l  509 (623)
                      |+.+++.++....   ..+.....|+.+.+..|.+
T Consensus       359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            7777777765431   3455566677666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.4e-15  Score=139.11  Aligned_cols=132  Identities=22%  Similarity=0.289  Sum_probs=78.4

Q ss_pred             hhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccE
Q 038273          350 WIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYG  429 (623)
Q Consensus       350 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  429 (623)
                      .+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..                      +++|+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~----------------------~~~L~~   97 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV----------------------ADTLEE   97 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH----------------------HHHCSE
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc----------------------CCcCCE
Confidence            67777777777777777764 44 6666777777777777665 23333222                      135666


Q ss_pred             EEccCCcccccCCccccccccCCeeeCCCCcccccCC-ccCCCCCCCcEEECCCCcccccCccc----------cccCCC
Q 038273          430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP-VSFSNLKQVESLDVSYNNLNGKIPPQ----------LVELNV  498 (623)
Q Consensus       430 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~----------~~~l~~  498 (623)
                      |++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+..|..          +..+++
T Consensus        98 L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~  175 (198)
T 1ds9_A           98 LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN  175 (198)
T ss_dssp             EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred             EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence            6666666664 23 45666666666666666664322 35566666666666666665544432          455666


Q ss_pred             CCeeecccCccc
Q 038273          499 LAVFSVAHNNLS  510 (623)
Q Consensus       499 L~~L~l~~N~l~  510 (623)
                      |+.|+  +|.++
T Consensus       176 L~~Ld--~~~i~  185 (198)
T 1ds9_A          176 LKKLD--GMPVD  185 (198)
T ss_dssp             CSEEC--CGGGT
T ss_pred             cEEEC--CcccC
Confidence            66554  44443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2e-15  Score=138.08  Aligned_cols=155  Identities=21%  Similarity=0.248  Sum_probs=126.0

Q ss_pred             hhccccCcEEEcccccccccCch------hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCC
Q 038273          351 IERLTRLRYLILANNNLEGEVPN------QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL  424 (623)
Q Consensus       351 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  424 (623)
                      +...+.++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..                      +
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------l   69 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------M   69 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----------------------H
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----------------------C
Confidence            44556777777777777766665      89999999999999999986 44 4443                      3


Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCc-cccccCCCCCeee
Q 038273          425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIP-PQLVELNVLAVFS  503 (623)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~  503 (623)
                      ++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. | .+..+++|+.|++++|++....+ +.+..+++|++|+
T Consensus        70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence            59999999999999 6788888889999999999999964 4 68889999999999999985443 5788999999999


Q ss_pred             cccCcccccCCCC----------ccccCCCCCccccCCCCC
Q 038273          504 VAHNNLSGKIPEW----------TAQFTTFKEDSYEGNPLL  534 (623)
Q Consensus       504 l~~N~l~~~~~~~----------~~~~~~l~~l~l~~Np~~  534 (623)
                      +++|++++..|..          +..+++|+.++  +||..
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9999998876653          56778888775  65553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=8e-13  Score=117.15  Aligned_cols=109  Identities=21%  Similarity=0.218  Sum_probs=95.7

Q ss_pred             CCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCc
Q 038273          381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN  460 (623)
Q Consensus       381 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  460 (623)
                      .+.+++++|.++. +|..+                        .++++.|++++|.+++..|..|..+++|++|+|++|.
T Consensus        11 ~~~l~~s~n~l~~-ip~~~------------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~   65 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI------------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ   65 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCEEEeCCCCcCc-cCccC------------------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence            4788888888864 33222                        2489999999999998889999999999999999999


Q ss_pred             ccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       461 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      ++++.+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus        66 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            998888889999999999999999998878889999999999999999987644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=2.6e-13  Score=136.04  Aligned_cols=107  Identities=16%  Similarity=0.219  Sum_probs=95.3

Q ss_pred             EEEccCC-cccccCCccccccccCCeeeCCC-CcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeeccc
Q 038273          429 GVDLSCN-KLTGEIPPQIGKLTSIRALNFSH-NNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH  506 (623)
Q Consensus       429 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~  506 (623)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4788888 888 5777 99999999999996 999988888999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273          507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  538 (623)
Q Consensus       507 N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~  538 (623)
                      |++++..+..+..++ |+.+++.+|++.|+|+
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            999987777776555 9999999999999653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.5e-12  Score=114.30  Aligned_cols=108  Identities=22%  Similarity=0.277  Sum_probs=93.8

Q ss_pred             CEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcc
Q 038273          382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNL  461 (623)
Q Consensus       382 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  461 (623)
                      +.+++++|.+. .+|..+                        .++|+.|++++|.+++..|..|..+++|++|+|++|.+
T Consensus        15 ~~l~~~~n~l~-~iP~~~------------------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   69 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI------------------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL   69 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCC-ccCCCc------------------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC
Confidence            67888888875 334322                        24899999999999988899999999999999999999


Q ss_pred             cccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273          462 TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP  514 (623)
Q Consensus       462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~  514 (623)
                      +++.+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..+
T Consensus        70 ~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            98877889999999999999999997777779999999999999999986543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.29  E-value=3.4e-10  Score=114.64  Aligned_cols=285  Identities=10%  Similarity=0.054  Sum_probs=127.3

Q ss_pred             CCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE
Q 038273           63 QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY  142 (623)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  142 (623)
                      ..+|+.+.+.. .++ .|++..|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .+....+..+ +|+.
T Consensus        45 ~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~  117 (379)
T 4h09_A           45 RDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDD  117 (379)
T ss_dssp             GGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSE
T ss_pred             ccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cccc
Confidence            34455555432 223 344444555555555555432 333334444443 3444444332 22 3344444332 4555


Q ss_pred             EecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc------------ccccccccC
Q 038273          143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG------------QLFYKKIYL  210 (623)
Q Consensus       143 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~  210 (623)
                      +.+..+- +.....+|.++ +++...+..+ ++ .+....|..+.+++.+.+..+....            .....+...
T Consensus       118 i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          118 FEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EECCTTC-CEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             ccCCCcc-ccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            5554432 22333334333 3444444332 22 3444444555555555544332111            111122233


Q ss_pred             CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeC
Q 038273          211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL  290 (623)
Q Consensus       211 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  290 (623)
                      ..+....+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|..+.+|+.+.+
T Consensus       194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence            334444333321 1133344555556666665433 23334445555566666655443 33344445555555555555


Q ss_pred             cCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccccccc
Q 038273          291 SENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE  370 (623)
Q Consensus       291 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  370 (623)
                      ..+ +.                        .++..+|..|++|+.+.+.++.++.+...+|.++.+|+.+.+..+ +...
T Consensus       271 ~~~-i~------------------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I  324 (379)
T 4h09_A          271 YAK-VK------------------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI  324 (379)
T ss_dssp             CCC-CS------------------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred             ccc-ce------------------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence            432 11                        233334555555555555555554444455555555555555433 3333


Q ss_pred             CchhhcCCCCCCEEEcc
Q 038273          371 VPNQLCRLKQLRLIDLS  387 (623)
Q Consensus       371 ~~~~~~~l~~L~~L~l~  387 (623)
                      ...+|.++++|+.+.+.
T Consensus       325 ~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          325 QVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTTTTTTCTTCCCCCCC
T ss_pred             HHHHhhCCCCCCEEEEC
Confidence            34455555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=1.5e-09  Score=109.88  Aligned_cols=299  Identities=8%  Similarity=0.006  Sum_probs=141.3

Q ss_pred             CCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEe
Q 038273          138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH  217 (623)
Q Consensus       138 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  217 (623)
                      .+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .++..+|.++ +|+.+.+..+ +......+|..+ +|+.+.
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence            3455555543 244444555666666666666433 44 5555555544 4555544322 332333334332 455555


Q ss_pred             cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc------------ccccccCCCCC
Q 038273          218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP------------IPLEFCQLNYL  285 (623)
Q Consensus       218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~------------~~~~~~~l~~L  285 (623)
                      +..+ ++.....+|.++ +++.+.+..+ ++......|..+..++.+.+..+.....            ....+.....+
T Consensus       120 lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             CCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             CCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            5443 222333334333 3444444322 2223334445555555555443322110            11112222333


Q ss_pred             cEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccc
Q 038273          286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN  365 (623)
Q Consensus       286 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  365 (623)
                      ..+.+......                         +...++..+.+++.+.+..+ +.......+.++..|+.+.+..+
T Consensus       197 ~~~~~~~~~~~-------------------------i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~  250 (379)
T 4h09_A          197 TEFTIPSTVKT-------------------------VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN  250 (379)
T ss_dssp             SEEECCTTCCE-------------------------ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT
T ss_pred             cccccccceeE-------------------------Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC
Confidence            33333222111                         11222444455555554432 22233344455555555555443


Q ss_pred             cccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc
Q 038273          366 NLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI  445 (623)
Q Consensus       366 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  445 (623)
                       ++.....+|.++.+|+.+.+..+ +......++..                      +.+|+.+.+.++.++.....+|
T Consensus       251 -v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~----------------------c~~L~~i~l~~~~i~~I~~~aF  306 (379)
T 4h09_A          251 -VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG----------------------CSNLTKVVMDNSAIETLEPRVF  306 (379)
T ss_dssp             -CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT----------------------CTTCCEEEECCTTCCEECTTTT
T ss_pred             -ccEeCccccceeehhcccccccc-ceecccccccc----------------------ccccccccccccccceehhhhh
Confidence             33333445555555665555432 22222222222                      2356666666555555556677


Q ss_pred             cccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCC
Q 038273          446 GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN  497 (623)
Q Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  497 (623)
                      .++.+|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+...+|.+..
T Consensus       307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            77788888888654 55566677888888888888654 5545556665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=2.6e-13  Score=136.15  Aligned_cols=113  Identities=19%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             CCCCEEEccCCcCcCcCCCC----CC-CCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCccc-----
Q 038273           89 TNLNTLVLRNNSLSGPFRMP----IQ-PHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-----  158 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----  158 (623)
                      ++|+.|++++|.++......    +. ..++|++|++++|.+.+.....+...+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45666666666654321111    11 124666666666665533233333334566666666666654333322     


Q ss_pred             CCCCCCCEEEccCCcCCcccchH---HhhCCCCCCEEEcccCcCcc
Q 038273          159 GDMNSLKFLDLSHNQLTGEIPEH---LVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~  201 (623)
                      ...++|++|++++|.++......   .+..+++|++|++++|.+..
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence            23455666666666654211111   11345555566665555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=1.1e-12  Score=131.51  Aligned_cols=135  Identities=21%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcccccccc-----ccCCCCCEEecccccCccc----cCccCc
Q 038273          162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK-----IYLRKLARLHLDANYCTGE----IPKSLS  232 (623)
Q Consensus       162 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~  232 (623)
                      ++|++|++++|.++......++..+++|++|++++|.++......+     ...++|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3455555555544422222222333445555555555443222222     1234455555555544321    122234


Q ss_pred             CCCCCcEEECcCCcCcccc----chhccCCCCCCEEECcccccccc----ccccccCCCCCcEEeCcCccce
Q 038273          233 NCSPLEGLYMSDNNLYGNI----PAWLGNLSSLNDIMMAINHLQGP----IPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       233 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      ..++|++|+|++|.+++..    +..+...++|++|++++|.+...    +...+...++|+.|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4555555555555554321    33344455555555555555432    1222334455666666655543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=2.2e-11  Score=121.91  Aligned_cols=113  Identities=17%  Similarity=0.219  Sum_probs=89.8

Q ss_pred             CCCccEEEccC-CcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCee
Q 038273          424 LNKMYGVDLSC-NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVF  502 (623)
Q Consensus       424 ~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  502 (623)
                      +++|+.|+|++ |.+++..+..|..+++|+.|+|++|.|+++.|..|.++++|+.|+|++|++++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34899999996 999988888999999999999999999999999999999999999999999977777776666 9999


Q ss_pred             ecccCcccccCC-CCccccCCCCCccccCCCCCCCC
Q 038273          503 SVAHNNLSGKIP-EWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       503 ~l~~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      ++++|++.+... .++..+.......+..+...|..
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~  144 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG  144 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence            999999986433 12222222233344455666643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=2.6e-09  Score=106.02  Aligned_cols=157  Identities=16%  Similarity=0.162  Sum_probs=86.1

Q ss_pred             cccEEEccCCCCCC-C-------CCcccCCCCCCcEEEccCCCCC---------CcCChHHhhCCCCCCEEEccCCcCcC
Q 038273           41 QLESVKLSGSGIHA-T-------FPKFLYNQHDLEYVDFSDSNLK---------GEFPNWLLENNTNLNTLVLRNNSLSG  103 (623)
Q Consensus        41 ~L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~ls~n~l~---------~~~~~~~~~~l~~L~~L~L~~n~i~~  103 (623)
                      .++.|.+..+...+ .       +..++.++++|+.|.+......         +.+. .++..+|+|+.|.+++|.-..
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence            57788887666542 1       1233456788999988654321         1222 445778899999998773111


Q ss_pred             cCCCCCCCCCCCCEEEccCCCCCCCCChhhhh-cCCCccEEecccC--cccc-----cCCccc--CCCCCCCEEEccCCc
Q 038273          104 PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRN--DFNG-----SIPSSI--GDMNSLKFLDLSHNQ  173 (623)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~L~~n--~i~~-----~~~~~~--~~l~~L~~L~l~~n~  173 (623)
                       .+. + .+++|++|++..+.+.......+.. .+|+|+.|+|+.+  ...+     .+...+  ..+++|++|++.+|.
T Consensus       187 -l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          187 -IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             -CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             -ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence             122 3 3778888888877665332233331 3678888887531  1110     011112  235667777776666


Q ss_pred             CCcccchHHhh--CCCCCCEEEcccCcCcc
Q 038273          174 LTGEIPEHLVI--GCFNLEYLVLSENSLHG  201 (623)
Q Consensus       174 l~~~~~~~~~~--~l~~L~~L~l~~n~l~~  201 (623)
                      +.+..+..++.  .+++|++|+++.|.+.+
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            65333333322  24455555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=1.1e-08  Score=101.44  Aligned_cols=135  Identities=20%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             hcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHh-hCCCCCCEEEcccC--cCccc-----cccc
Q 038273          135 VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV-IGCFNLEYLVLSEN--SLHGQ-----LFYK  206 (623)
Q Consensus       135 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n--~l~~~-----~~~~  206 (623)
                      ..+|+|+.|++++|.-. ..+. +. +++|++|++..+.+.......+. ..+++|++|+|+.+  ...+.     +...
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            33677888887776311 1222 32 67788888877776533322332 25778888877531  11110     0011


Q ss_pred             c--ccCCCCCEEecccccCccccCccC---cCCCCCcEEECcCCcCcccc----chhccCCCCCCEEECcccccc
Q 038273          207 K--IYLRKLARLHLDANYCTGEIPKSL---SNCSPLEGLYMSDNNLYGNI----PAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       207 ~--~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      +  ..+++|+.|++.+|.+....+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|+++.|.+.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            1  134566666666655543221111   23456666666666555432    222233455666666665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=1e-07  Score=85.21  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             cccccCCeeeCCCCccccc----CCccCCCCCCCcEEEC--CCCccccc----CccccccCCCCCeeecccCccc
Q 038273          446 GKLTSIRALNFSHNNLTGV----IPVSFSNLKQVESLDV--SYNNLNGK----IPPQLVELNVLAVFSVAHNNLS  510 (623)
Q Consensus       446 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~  510 (623)
                      ...++|++|+|++|.|.+.    +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3334555555555555432    2234444555666666  55655532    2233444556666666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=5.6e-07  Score=80.39  Aligned_cols=118  Identities=11%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             CCcccCCCCCCCEEEccCC-cCCcccchH---HhhCCCCCCEEEcccCcCcccc----ccccccCCCCCEEecccccCcc
Q 038273          154 IPSSIGDMNSLKFLDLSHN-QLTGEIPEH---LVIGCFNLEYLVLSENSLHGQL----FYKKIYLRKLARLHLDANYCTG  225 (623)
Q Consensus       154 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~  225 (623)
                      +...+...++|++|++++| .+.......   .+...++|++|++++|.+....    ...+...++|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4455677788888888888 776322111   1234567788888877776432    2233344566666666666653


Q ss_pred             c----cCccCcCCCCCcEEEC--cCCcCcccc----chhccCCCCCCEEECccccc
Q 038273          226 E----IPKSLSNCSPLEGLYM--SDNNLYGNI----PAWLGNLSSLNDIMMAINHL  271 (623)
Q Consensus       226 ~----~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~  271 (623)
                      .    +...+...+.|++|++  ++|.+....    ...+...++|++|++++|.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            2    2334455556666666  556554332    22333345555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=2.3e-07  Score=87.14  Aligned_cols=80  Identities=18%  Similarity=0.272  Sum_probs=53.3

Q ss_pred             cccccCCeeeCCCCccccc--CCccCCCCCCCcEEECCCCcccccCccccccCC--CCCeeecccCcccccCCC------
Q 038273          446 GKLTSIRALNFSHNNLTGV--IPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN--VLAVFSVAHNNLSGKIPE------  515 (623)
Q Consensus       446 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~~~------  515 (623)
                      .++++|+.|+|++|.++++  +|..+..+++|+.|+|++|++.+.  +.+..+.  .|++|++++|++++..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4567788888888888763  345566778888888888888754  2333333  788888888888765542      


Q ss_pred             -CccccCCCCCcc
Q 038273          516 -WTAQFTTFKEDS  527 (623)
Q Consensus       516 -~~~~~~~l~~l~  527 (623)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             234566666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=1.3e-06  Score=82.00  Aligned_cols=79  Identities=20%  Similarity=0.295  Sum_probs=64.3

Q ss_pred             CCCCccEEEccCCcccc--cCCccccccccCCeeeCCCCcccccCCccCCCCC--CCcEEECCCCcccccCc-------c
Q 038273          423 PLNKMYGVDLSCNKLTG--EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLK--QVESLDVSYNNLNGKIP-------P  491 (623)
Q Consensus       423 ~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p-------~  491 (623)
                      .+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+.+..|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            35799999999999997  4456778999999999999999865  3344444  99999999999987655       2


Q ss_pred             ccccCCCCCeee
Q 038273          492 QLVELNVLAVFS  503 (623)
Q Consensus       492 ~~~~l~~L~~L~  503 (623)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467889998886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=2.3e-06  Score=74.24  Aligned_cols=82  Identities=9%  Similarity=0.032  Sum_probs=46.4

Q ss_pred             CccEEecccCcccccCCcccCCCCCCCEEEccCCc-CCcccchHHhhC----CCCCCEEEcccCc-CccccccccccCCC
Q 038273          139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ-LTGEIPEHLVIG----CFNLEYLVLSENS-LHGQLFYKKIYLRK  212 (623)
Q Consensus       139 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~~~~  212 (623)
                      +|+.||+++|.++...-..+.++++|++|+|++|. +++..-..+ ..    +++|++|++++|. ++......+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            57777777777665555556677777777777774 442222222 22    2356666666654 55444444445555


Q ss_pred             CCEEecccc
Q 038273          213 LARLHLDAN  221 (623)
Q Consensus       213 L~~L~l~~n  221 (623)
                      |+.|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=1.5e-06  Score=75.45  Aligned_cols=83  Identities=7%  Similarity=0.053  Sum_probs=41.4

Q ss_pred             CCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCC-CCCCCChhhhhc---CCCccEEecccCc-ccccCCcccCCCCCCC
Q 038273           91 LNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF-FQGNIPLEIGVY---FPRLVYLNLSRND-FNGSIPSSIGDMNSLK  165 (623)
Q Consensus        91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~---l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~  165 (623)
                      |+.|++++|.++......+.++++|++|+|++|. +++.--..+...   +++|++|++++|. +++..-..++++++|+
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~  142 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK  142 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence            4444444444333222333445555555555553 332222223221   2357777777763 5554444566677777


Q ss_pred             EEEccCCc
Q 038273          166 FLDLSHNQ  173 (623)
Q Consensus       166 ~L~l~~n~  173 (623)
                      +|++++|.
T Consensus       143 ~L~L~~c~  150 (176)
T 3e4g_A          143 YLFLSDLP  150 (176)
T ss_dssp             EEEEESCT
T ss_pred             EEECCCCC
Confidence            77777764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.94  E-value=2.2e-06  Score=71.16  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=44.4

Q ss_pred             EEECCCCccc-ccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 038273          477 SLDVSYNNLN-GKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  551 (623)
Q Consensus       477 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~~  551 (623)
                      .++.+++.++ ..+|..+  .++|++|+|++|+|+...+..+..+++|+.+++++|||.|     +|+..|+..|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C-----dC~l~~l~~wl   80 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC-----DCRLVPLRAWL   80 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC-----SGGGHHHHHHH
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec-----cCccHHHHHHH
Confidence            5555666554 2333322  2356777777777776666667777788888999999999     67665555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.95  E-value=0.0011  Score=54.57  Aligned_cols=56  Identities=23%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             EEEccCCccc-ccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          429 GVDLSCNKLT-GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       429 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|.|+.+.++.|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5667777665 24444333  35777777777777666666777777777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.73  E-value=0.0011  Score=58.58  Aligned_cols=84  Identities=13%  Similarity=0.100  Sum_probs=37.2

Q ss_pred             CCCCEEEcccCcCcccccc----ccccCCCCCEEecccccCccc----cCccCcCCCCCcEEECcCC---cCcc----cc
Q 038273          187 FNLEYLVLSENSLHGQLFY----KKIYLRKLARLHLDANYCTGE----IPKSLSNCSPLEGLYMSDN---NLYG----NI  251 (623)
Q Consensus       187 ~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n---~l~~----~~  251 (623)
                      ..|++|+|++|.+......    .+..-+.|+.|+|+.|.+...    +.+++..-+.|+.|+|++|   .+..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            3444444444444432222    222334455555555544421    1233444455666666543   2222    12


Q ss_pred             chhccCCCCCCEEECcccc
Q 038273          252 PAWLGNLSSLNDIMMAINH  270 (623)
Q Consensus       252 ~~~l~~l~~L~~L~l~~n~  270 (623)
                      ...+..-+.|+.|+++.+.
T Consensus       150 a~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCcCeEeccCCC
Confidence            2334444566666665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.46  E-value=0.0022  Score=56.68  Aligned_cols=111  Identities=9%  Similarity=0.027  Sum_probs=65.7

Q ss_pred             hCCCCCCEEEcccC-cCccc----cccccccCCCCCEEecccccCccccC----ccCcCCCCCcEEECcCCcCcccc---
Q 038273          184 IGCFNLEYLVLSEN-SLHGQ----LFYKKIYLRKLARLHLDANYCTGEIP----KSLSNCSPLEGLYMSDNNLYGNI---  251 (623)
Q Consensus       184 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~---  251 (623)
                      ..-+.|++|+++++ .+...    +...+..-..|+.|+|++|.+.....    +.+..-+.|+.|+|+.|.|.+..   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34556777777764 55432    23444556678888888888764322    33345567888888888876532   


Q ss_pred             -chhccCCCCCCEEECccccc---cc----cccccccCCCCCcEEeCcCcc
Q 038273          252 -PAWLGNLSSLNDIMMAINHL---QG----PIPLEFCQLNYLEILDLSENN  294 (623)
Q Consensus       252 -~~~l~~l~~L~~L~l~~n~~---~~----~~~~~~~~l~~L~~L~l~~n~  294 (623)
                       ...+..-+.|++|+++++..   ..    .+...+..-+.|+.|+++.|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence             23445556678888765422   21    122334445667777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	623
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 1e-20
 Identities = 58/369 (15%), Positives = 121/369 (32%), Gaps = 30/369 (8%)

Query: 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
           ++  L   R     SI   +  +N+L  ++ S+NQLT   P   +     L  ++++ N 
Sbjct: 45  QVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQ 99

Query: 199 LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNL 258
           +        +       L  +       +    +         +S N +           
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL----ELSSNTISDISALSGLTS 155

Query: 259 SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNML 318
                    +  L+    L   +           +N    +   +  + ++ +  + N +
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLD------ISSNKVSDISVLAKLTNLESLIATNNQI 209

Query: 319 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL 378
                       +++  L L+ N         +  LT L  L LANN +    P  L  L
Sbjct: 210 SDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 262

Query: 379 KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT 438
            +L  + L  N +    P  L   +   N + + +          L  +  + L  N ++
Sbjct: 263 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 439 GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNV 498
              P  +  LT ++ L F++N ++     S +NL  +  L   +N ++   P  L  L  
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374

Query: 499 LAVFSVAHN 507
           +    +   
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 1e-15
 Identities = 54/323 (16%), Positives = 100/323 (30%), Gaps = 27/323 (8%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-----NIPLEIGVYFPR 139
           +E   NL  +   NN L+     P++    L  + ++ N         N+    G+    
Sbjct: 62  VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199
               ++       ++       N++  +       + +                L+    
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 200 ------HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPA 253
                           L  L  L    N  +   P      + L+ L ++ N L      
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IG 235

Query: 254 WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL 313
            L +L++L D+ +A N +    P     L  L  L L  N IS   P     +       
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 314 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373
              +           N  ++  L L +N+ S   P  +  LT+L+ L  ANN +     +
Sbjct: 294 ENQLED----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS 345

Query: 374 QLCRLKQLRLIDLSNNNLFGQIP 396
            L  L  +  +   +N +    P
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 3e-13
 Identities = 67/419 (15%), Positives = 122/419 (29%), Gaps = 80/419 (19%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
           Q+ +++    GI       +   ++L  ++FS++ L    P   L+N T L  +++ NN 
Sbjct: 45  QVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQ 99

Query: 101 LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 160
           ++    +    +    TL  ++      +     +    L    +S       + S    
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
               +  D     L        +    N                     L  L  L    
Sbjct: 160 SFGNQVTD--LKPLANLTTLERLDISSN-----------KVSDISVLAKLTNLESLIATN 206

Query: 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
           N  +   P      + L+ L ++ N L       L +L++L D+ +A N +    P    
Sbjct: 207 NQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
            L  L  L L  N IS   P     +          +           N  ++  L L +
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYF 316

Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD 400
           N+ S   P  +  LT+L+ L  ANN +     + L  L  +  +   +N +    P    
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP---- 368

Query: 401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN 459
                                                       +  LT I  L  +  
Sbjct: 369 --------------------------------------------LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 21/193 (10%)

Query: 6   SLEPFFNNSKLKVFSGECNEI-FVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQH 64
            + P    + L   S   N++  + + +S +      L + ++S           L    
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-------PLSGLT 263

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
            L  +    + +    P   L   TNL     +          PI    +L  L +  N 
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLE-----DISPISNLKNLTYLTLYFNN 318

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
                P+       +L  L  + N  +    SS+ ++ ++ +L   HNQ++   P   + 
Sbjct: 319 ISDISPVS---SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP---LA 370

Query: 185 GCFNLEYLVLSEN 197
               +  L L++ 
Sbjct: 371 NLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.4 bits (220), Expect = 3e-20
 Identities = 54/262 (20%), Positives = 92/262 (35%), Gaps = 5/262 (1%)

Query: 285 LEILDLSENNISGTLP---SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 341
           +  LDLS  N+    P   S ++   +  +++                 + +  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 342 SFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPG-CLD 400
           + SG IP ++ ++  L  L  + N L G +P  +  L  L  I    N + G IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460
            + L  +     +    +      N           +       +              N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQF 520
                       K +  LD+  N + G +P  L +L  L   +V+ NNL G+IP+     
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NL 290

Query: 521 TTFKEDSYEGNPLLCGKPLPDC 542
             F   +Y  N  LCG PLP C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.5 bits (202), Expect = 7e-18
 Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 5/253 (1%)

Query: 237 LEGLYMSDNNLYGN--IPAWLGNLSSLNDIMMAINH-LQGPIPLEFCQLNYLEILDLSEN 293
           +  L +S  NL     IP+ L NL  LN + +   + L GPIP    +L  L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 294 NISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER 353
           N+SG +P   S                     +  +  ++V +    N  SG IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGS 413
            ++L   +  + N              L  +DLS N L G       +           +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 414 SAPTRYKGKPLNKMYGV-DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNL 472
           S         L+K     DL  N++ G +P  + +L  + +LN S NNL G IP    NL
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 473 KQVESLDVSYNNL 485
           ++ +    + N  
Sbjct: 291 QRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 5e-16
 Identities = 55/266 (20%), Positives = 87/266 (32%), Gaps = 26/266 (9%)

Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCF-NLEYLVLSEN-SLHGQLFYKKIYLRKL 213
            +      +  LDLS   L    P    +     L +L +    +L G +      L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 214 ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG 273
             L++     +G IP  LS    L  L  S N L G +P  + +L +L  I    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL-------------------- 313
            IP  +   + L        N        +  +                           
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 314 ---SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE 370
                         G      ++  LDL  N   G +P  + +L  L  L ++ NNL GE
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 371 VPNQLCRLKQLRLIDLSNNNLFGQIP 396
           +P Q   L++  +   +NN      P
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 3e-12
 Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 5/253 (1%)

Query: 66  LEYVDFSDSNLKGEFP-NWLLENNTNLNTLVLRNN-SLSGPFRMPIQPHWHLDTLHVSKN 123
           +  +D S  NL   +P    L N   LN L +    +L GP    I     L  L+++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 124 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV 183
              G IP +       LV L+ S N  +G++P SI  + +L  +    N+++G IP+   
Sbjct: 112 NVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 184 IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMS 243
                   + +S N L G++      L                     S+ +  +     
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 244 DNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303
           ++  +      L    +  D+    N + G +P    QL +L  L++S NN+ G +P   
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRN--NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 304 SHSTIQQVHLSKN 316
           +         + N
Sbjct: 289 NLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 105 FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL 164
               +      +T  +          L        L  L+L  N   G++P  +  +  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199
             L++S N L GEIP+         +    + N  
Sbjct: 271 HSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 104 PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNS 163
                +    +L+ L +  N   G +P  +      L  LN+S N+  G IP   G++  
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292

Query: 164 LKFLDLSHNQLTGEIP 179
                 ++N+     P
Sbjct: 293 FDVSAYANNKCLCGSP 308

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 8e-18
 Identities = 47/265 (17%), Positives = 82/265 (30%), Gaps = 7/265 (2%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P+ I         + L  N  +    +S     +L  L L  N L              
Sbjct: 26  VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 189 LEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY 248
            +  +     L          L +L  LHLD        P      + L+ LY+ DN L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTI 308
                   +L +L  + +  N +       F  L+ L+ L L +N ++   P        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE 368
                        L         ++  L L+ N +  +          L+    +++ + 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVP 261

Query: 369 GEVPNQLCRLKQLRLIDLSNNNLFG 393
             +P    RL    L  L+ N+L G
Sbjct: 262 CSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 51/257 (19%), Positives = 85/257 (33%), Gaps = 5/257 (1%)

Query: 64  HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN 123
              + +    + +             NL  L L +N L+            L+ L +S N
Sbjct: 32  AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 124 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV 183
               ++         RL  L+L R       P     + +L++L L  N L     +   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149

Query: 184 IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMS 243
               NL +L L  N +          L  L RL L  N      P +  +   L  LY+ 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 244 DNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303
            NNL       L  L +L  + +  N              +L+    S + +  +LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 304 SHSTIQQVHLSKNMLYG 320
           +   +++  L+ N L G
Sbjct: 269 AGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 46/256 (17%), Positives = 89/256 (34%), Gaps = 6/256 (2%)

Query: 42  LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSL 101
            + + L G+ I            +L  +    + L                  +  N  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM 161
                        L TLH+        +   +      L YL L  N        +  D+
Sbjct: 94  RSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
            +L  L L  N+++  +PE    G  +L+ L+L +N +     +    L +L  L+L AN
Sbjct: 153 GNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 222 YCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281
             +    ++L+    L+ L ++DN    +  A     + L     + + +   +P     
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR--- 267

Query: 282 LNYLEILDLSENNISG 297
           L   ++  L+ N++ G
Sbjct: 268 LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 8e-10
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 31/288 (10%)

Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYL 285
            +P  +      + +++  N +     A      +L  + +  N L       F      
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG---- 78

Query: 286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 345
                               + ++Q+ LS N     +   TF     + TL L       
Sbjct: 79  -------------------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 346 NIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN-TSL 404
             P     L  L+YL L +N L+    +    L  L  + L  N +            SL
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 405 HNNG-DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTG 463
                  +  +    +  + L ++  + L  N L+      +  L +++ L  + N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 464 VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511
                      ++    S + +   +P +L   ++     +A N+L G
Sbjct: 240 DCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 40/212 (18%), Positives = 65/212 (30%), Gaps = 3/212 (1%)

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNN 390
           ++   + L  N  S            L  L L +N L          L  L  +DLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 391 LFGQIPGCLDNTSLH---NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGK 447
               +     +        + D  G         + L  +  + L  N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 448 LTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN 507
           L ++  L    N ++ V   +F  L  ++ L +  N +    P    +L  L    +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 508 NLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 539
           NLS    E  A     +      NP +C    
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 7e-16
 Identities = 45/276 (16%), Positives = 87/276 (31%), Gaps = 13/276 (4%)

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
            A L L  N  T        N   L  L + +N +    P     L  L  + ++ N L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 273 GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
                    L  L + +     +  ++ +  +   + ++  +     G    G F     
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKK 151

Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392
           +  + ++  + +  IP  +     L  L L  N +       L  L  L  + LS N++ 
Sbjct: 152 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 393 GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKP-LNKMYGVDLSCNKLTG------EIPPQI 445
               G L NT        + +       G      +  V L  N ++         P   
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 446 GKLTSIRALNFSHNNLT--GVIPVSFSNLKQVESLD 479
            K  S   ++   N +    + P +F  +    ++ 
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 5e-14
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 4/206 (1%)

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNN 390
                LDL  N  +       + L  L  LIL NN +    P     L +L  + LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 391 LFGQIPG-CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT 449
           L             L  + +       + + G     +  +  +  K +G        + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509
            +  +  +  N+T +      +L     L +  N +       L  LN LA   ++ N++
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 510 SGKIPEWTAQFTTFKEDSYEGNPLLC 535
           S       A     +E     N L+ 
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 56/324 (17%), Positives = 106/324 (32%), Gaps = 31/324 (9%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF 124
            L  V  SD  L+ + P  L     +   L L+NN ++       +   +L TL +  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 125 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
                P        +L  L LS+N            +  L+  +    ++   +   L  
Sbjct: 67  ISKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-- 123

Query: 185 GCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244
               +  L  +     G        ++KL+ + +     T  IP+ L     L  L++  
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 180

Query: 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS 304
           N +     A L  L++L  + ++ N +            +L  L L+ N +       + 
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN 364
           H  IQ V+L  N +                   +  N F    P +  +      + L +
Sbjct: 241 HKYIQVVYLHNNNISA-----------------IGSNDFCP--PGYNTKKASYSGVSLFS 281

Query: 365 NNLEGE--VPNQLCRLKQLRLIDL 386
           N ++     P+    +     + L
Sbjct: 282 NPVQYWEIQPSTFRCVYVRAAVQL 305

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 39/291 (13%), Positives = 89/291 (30%), Gaps = 39/291 (13%)

Query: 167 LDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGE 226
           LDL+   L  ++   L+     +       + +   L  +     ++  + L  +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVS 61

Query: 227 -IPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN--DIMMAINHLQGPIPLEFCQLN 283
            +   LS CS L+ L +    L   I   L   S+L   ++       +  +       +
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 284 YLEILDLSENNISGTLPSCSSHSTIQQVH-------LSKNMLYGPLKYGTFFNRSSIVTL 336
            L+ L+LS            + + + +           KN+    L        + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILAN-NNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395
                    +      +L  L++L L+   ++  E   +L  +  L+ + +         
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-------- 233

Query: 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG 446
            G + + +L                      +  + ++C+  T    P IG
Sbjct: 234 -GIVPDGTLQ----------------LLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 35/277 (12%), Positives = 79/277 (28%), Gaps = 38/277 (13%)

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199
           ++     R+  +  +         ++ +DLS++ +       ++  C  L+ L L    L
Sbjct: 25  VIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP-----AW 254
                                   +  I  +L+  S L  L +S  + +         + 
Sbjct: 84  ------------------------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSE----NNISGTLPSCSSHSTIQQ 310
              L  LN         +            +  L+LS        S           +  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 311 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSY-NSFSGNIPYWIERLTRLRYLILANNNLEG 369
           + LS +++     +  FF  + +  L LS            +  +  L+ L +     +G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 370 EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406
            +      L  L+   ++ ++        + N     
Sbjct: 240 TLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 3/180 (1%)

Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
           +DL+   L  ++  ++     + A     + +   +   FS  + V+ +D+S + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 490 PPQLVE-LNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVP 548
              ++   + L   S+    LS  I    A+ +     +  G        L     +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 549 EASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPHWRRRWFYLIENWMTSCFYF 608
                             +        +    +     N         +           
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 9/230 (3%)

Query: 41  QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS 100
            + + +   S +     +   +   ++++D S+S ++    + +L   + L  L L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 101 LSGPFRMPIQPHWHLDTLHVSKN-FFQGNIPLEIGVYFPRLVYLNL------SRNDFNGS 153
           LS P    +  + +L  L++S    F       +     RL  LNL      +      +
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 154 IPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKL 213
           +      +  L       N    ++   +      +   +     L    F +   L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 214 ARLHL-DANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262
             L L        E    L     L+ L +      G +      L  L 
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 48/265 (18%), Positives = 83/265 (31%), Gaps = 13/265 (4%)

Query: 157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARL 216
            +  + S   ++     LT  +P  L     +   L LSEN L+       +   +L +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276
           +LD    T           P+ G     +N   ++P     L +L  + ++ N L     
Sbjct: 61  NLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 336
                L  L+ L L  N +    P   + +   +     N     L  G      ++ TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
            L  NS    IP        L +  L  N          C +   R     N        
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN-----CEILYFRRWLQDNAENVYVWK 231

Query: 397 GCLDNTSLHNNGDNDGSSAPTRYKG 421
             +D  ++ +N  +       ++  
Sbjct: 232 QGVDVKAMTSNVASVQCDNSDKFPV 256

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 7/188 (3%)

Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188
           +P ++         L+LS N       +++     L  L+L   +LT    +        
Sbjct: 25  LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG----TLP 77

Query: 189 LEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY 248
           +   +   ++    L      L  L  L +  N  T     +L     L+ LY+  N L 
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTI 308
              P  L     L  + +A N+L          L  L+ L L EN++            +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 309 QQVHLSKN 316
               L  N
Sbjct: 198 PFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 10/215 (4%)

Query: 329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSN 388
             +S + ++    + +  +P  +        L L+ N L       L    +L  ++L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 389 NNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL 448
                ++        L     +          G+ L  +  +D+S N+LT      +  L
Sbjct: 65  AE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 449 TSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
             ++ L    N L  + P   +   ++E L ++ NNL       L  L  L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 509 LSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
           L   IP+              GNP LC     +C+
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPWLC-----NCE 212

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 41/211 (19%), Positives = 61/211 (28%), Gaps = 10/211 (4%)

Query: 62  NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121
                  V+    NL    P  L     +   L L  N L       + P+  L  L++ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEH 181
           +               P L  L+LS N                      +   +  +P  
Sbjct: 64  RAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLG 118

Query: 182 LVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLY 241
            + G   L+ L L  N L            KL +L L  N  T      L+    L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 242 MSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
           + +N+LY  IP        L    +  N   
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 9e-09
 Identities = 43/449 (9%), Positives = 107/449 (23%), Gaps = 19/449 (4%)

Query: 65  DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPI----QPHWHLDTLHV 120
           D++ +D     L       LL        + L +  L+      I    + +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 121 SKNFFQGNIPLEIGVYF----PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG 176
             N         +         ++  L+L      G+    +             +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 177 EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP 236
            + +  +                    +             +       +     +N   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
             G+ +    L  +             +          I      L  L +      ++ 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 297 GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR 356
                        ++        G    G       +   +              E    
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 357 LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAP 416
           L   +L        +  + C          S+     +    L  +  +N  ++ G    
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS--NNRLEDAGVREL 360

Query: 417 TRYKGKPLNKMYGVDLSCNKLTGE----IPPQIGKLTSIRALNFSHNNLTGVIPVSFS-- 470
            +  G+P + +  + L+   ++      +   +    S+R L+ S+N L     +     
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 471 ---NLKQVESLDVSYNNLNGKIPPQLVEL 496
                  +E L +     + ++  +L  L
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 8e-07
 Identities = 44/442 (9%), Positives = 98/442 (22%), Gaps = 40/442 (9%)

Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLKFLDLS 170
           + +L +           E+     +   + L            I S++    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 171 HNQLTGEIPEHLVIG----CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGE 226
            N+L       ++ G       ++ L L    L G          +      + +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 227 IPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLE 286
           +  +         L          +     + +S   +   +        L     +  E
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 287 ILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
                        P       ++   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 347 IPYWIERLTRLRYLILA--------------------NNNLEGEVPNQLCRLKQLRLIDL 386
                  L     L                             E+      L       L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 387 SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG 446
               L              +      S   +            +  +  +  G      G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 447 KL---TSIRALNFSHNNLTGV----IPVSFSNLKQVESLDVSYNNLNGKIPPQLVE---- 495
                + +R L  +  +++      +  +      +  LD+S N L      QLVE    
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 496 -LNVLAVFSVAHNNLSGKIPEW 516
              +L    +     S ++ + 
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 325 GTFFNRSSIVTLDLSYNSFSGN----IPYWIERLTRLRYLILANNNLEGEVPNQLCR--- 377
           G     S +  L L+    S +    +   +     LR L L+NN L      QL     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 378 --LKQLRLIDLSNNNLFGQIPGCLDNTSLHNN 407
                L  + L +     ++   L        
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 454

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 358 RYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPT 417
           R L LA+ +L   V   L +L  +  +DLS+N L    P       L        ++   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV-LQASDNALEN 57

Query: 418 RYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTSIRALNFSHNNLT---GVIPVSFSNLK 473
                 L ++  + L  N+L        +     +  LN   N+L    G+       L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 474 QVESL 478
            V S+
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 85  LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144
           LE    +  L L +N L             L  L V +        ++     PRL  L 
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 145 LSRNDFNG-SIPSSIGDMNSLKFLDLSHNQLTGE--IPEHLVIGCFNLEYLV 193
           L  N     +    +     L  L+L  N L  E  I E L     ++  ++
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 287 ILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
           +L L+  +++  L        +  + LS N L              +  L  S N+    
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENV 58

Query: 347 IPYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNL 391
                    RL+ L+L NN L+       L    +L L++L  N+L
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 269 NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 328
             L     LE  QL  +  LDLS N +    P+ ++    + + + +             
Sbjct: 8   KDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAAL---RCLEVLQASDNALENVDGVA 62

Query: 329 NRSSIVTLDLSYNSF-SGNIPYWIERLTRLRYLILANNNLEGE 370
           N   +  L L  N          +    RL  L L  N+L  E
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 240 LYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTL 299
           L+++  +L   +   L  L  +  + ++ N L+   P     L  LE+L  + +N    +
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-ASDNALENV 58

Query: 300 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS---GNIPYWIERLTR 356
              ++   +Q++ L  N L          +   +V L+L  NS     G      E L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 357 LRYLI 361
           +  ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHL-DANYC 223
           + L L+H  LT  +  HL      + +L LS N L          L  L  L +  A+  
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRAL----PPALAALRCLEVLQASDN 53

Query: 224 TGEIPKSLSNCSPLEGLYMSDNNL-YGNIPAWLGNLSSLNDIMMAINHLQG 273
             E    ++N   L+ L + +N L        L +   L  + +  N L  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 93  TLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG 152
            L L +  L+      ++    +  L +S N  +   P         L  L + +   N 
Sbjct: 2   VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNA 54

Query: 153 SI-PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLR 211
                 + ++  L+ L L +N+L        ++ C  L  L L  NSL  +   ++    
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 212 KLARL 216
            L  +
Sbjct: 115 MLPSV 119

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 59/341 (17%), Positives = 103/341 (30%), Gaps = 31/341 (9%)

Query: 162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI--YLRKLARLHLD 219
                L+L++  L+  +PE       +LE LV S NSL       ++    + L  L +D
Sbjct: 38  RQAHELELNNLGLS-SLPELP----PHLESLVASCNSL------TELPELPQSLKSLLVD 86

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
            N        +L   S L  L          +       +S    ++ +++       + 
Sbjct: 87  NN--------NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL 138

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 339
                      ++      L +    + I   + S   L             + +  +L 
Sbjct: 139 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 198

Query: 340 YNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCL 399
                  +         L+ L     +LE              L          +     
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 400 DNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN 459
            +    N    + SS   R        +  +++S NKL  E+P    +L     L  S N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFN 314

Query: 460 NLTGVIPVSFSNLKQVESLDVSYNNLNG--KIPPQLVELNV 498
           +L   +P    NLK    L V YN L     IP  + +L +
Sbjct: 315 HLAE-VPELPQNLK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 61/335 (18%), Positives = 105/335 (31%), Gaps = 27/335 (8%)

Query: 206 KKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM 265
           +    R+   L L+    +  +P+   +   LE L  S N+L   +P    +L SL    
Sbjct: 33  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELPQSLKSLLVDN 87

Query: 266 ---MAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPL 322
               A++ L   +       N LE L   +N+    +    ++S  +   L  ++ +   
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 323 KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLR 382
                     +  L      ++ N          L    +   N   E   +L  L  L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 383 LIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMY----------GVDL 432
            I   NN L           +L+   +              L+                 
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 433 SCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ 492
             N  + EI        S+  LN S+N L   +P     L   E L  S+N+L  ++P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPEL 322

Query: 493 LVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDS 527
              L  L    V +N L  + P+        + +S
Sbjct: 323 PQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 34/159 (21%)

Query: 104 PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNS 163
              + ++ ++  D   + ++    ++   I      L       N  +  I S      S
Sbjct: 226 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 285

Query: 164 LKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYC 223
           L+ L++S+N+L  E+P         LE L+ S N L                        
Sbjct: 286 LEELNVSNNKLI-ELPALP----PRLERLIASFNHL------------------------ 316

Query: 224 TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262
             E+P+   N   L+ L++  N L    P    ++  L 
Sbjct: 317 -AEVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 3/163 (1%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK 212
            IP  I        L L+ N+L     + L     +L  L L  N L G           
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272
           +  L L  N       K       L+ L + DN +   +P    +L+SL  + +A N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 273 GPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK 315
               L +      +   L+        PS      I+ +  S+
Sbjct: 140 CNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 35/210 (16%)

Query: 129 IPLEIGVYFP-----RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIP-EHL 182
           +P  I   F        +  NL +     ++  +  ++NS+  +  +++ +      ++L
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYL 67

Query: 183 VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARL------------------HLDANYCT 224
                N+  L L+ N L        +       L                   L   +  
Sbjct: 68  P----NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY 284
                 L +   LE LY+ +N +          L+ L+ + +  N +   +P     L  
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 285 LEILDLSENNISGTLPSCSSHSTIQQVHLS 314
           L+ L LS+N+IS  L + +    +  + L 
Sbjct: 180 LQNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 24/193 (12%), Positives = 64/193 (33%), Gaps = 20/193 (10%)

Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAIN 269
             +  + +L     T  +  + +  + ++ +  +++++       +  L ++  + +  N
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 270 HLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 329
            L    PL   +      LD ++     +L       ++   H   + + G +      +
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 330 RSSIVTLDLSYNSFSGNIPYW--------------IERLTRLRYLILANNNLEGEVPNQL 375
                         S                    +  LT+L+ L L+ N++       L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRAL 196

Query: 376 CRLKQLRLIDLSN 388
             LK L +++L +
Sbjct: 197 AGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 24/169 (14%)

Query: 331 SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL---- 386
           +SI  +  + +         I+ L  +  L L  N L    P    +      +D     
Sbjct: 46  NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 387 --------------SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDL 432
                         S  +        L +     +     +          L K+  + L
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163

Query: 433 SCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVS 481
             N+++  +P  +  LT ++ L  S N+++ +     + LK ++ L++ 
Sbjct: 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 208

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 42/264 (15%), Positives = 73/264 (27%), Gaps = 48/264 (18%)

Query: 130 PLEIGVYFP-----RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVI 184
           P  I V FP       + +   +++   ++  +  D++ +  L      +T  I    V 
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG--VQ 60

Query: 185 GCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244
              NL  L L +N +      K +       L  +       I    S  +         
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS 304
           +       + L  L    + +  I+ L G   L++                         
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS----------------------- 157

Query: 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILAN 364
                                   N S + TL    N  S   P  +  L  L  + L N
Sbjct: 158 -----------IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204

Query: 365 NNLEGEVPNQLCRLKQLRLIDLSN 388
           N +    P  L     L ++ L+N
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 22/225 (9%), Positives = 62/225 (27%), Gaps = 16/225 (7%)

Query: 257 NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316
            L++   I    +++   +      L+ +  L      ++ T+      + +  + L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC 376
            +                             P            I   +    ++ +   
Sbjct: 74  QITDLAPLKNLTKI---------TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 377 RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK 436
                 L  L  +         L   +         +          L+K+  +    NK
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVS 481
           ++   P  +  L ++  ++  +N ++ V P   +N   +  + ++
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 39/217 (17%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK 212
            IPS +    +   L     +L   I +    G  +LE + +S+N +   +         
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY----GNIPAWLGNLSSLNDIMMAI 268
                              +  +     Y+  +N       ++         L DI   I
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 269 NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 328
           N                 IL L++N I        + + + +++LS N     L    F 
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365
             S  V LD+S         Y +E L +LR     N 
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG---QLFYKKIYLRKLARLHLD 219
           S +      +++T EIP  L     N   L      L       F     L K+     D
Sbjct: 9   SNRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 220 ANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279
                     S         +  ++N LY N  A+    +    ++        P   + 
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 280 CQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 339
             L  + +      NI     +     + + V L  N       +   FN + +  L+LS
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 340 YNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
            N+    +P  +    +    L ++   +       L  LK+LR     N 
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 429 GVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN-LTGVIPVSFSNLKQVESLDVSYNNLNG 487
           G+  + +    +    +    ++  L   +   L  +       L ++ +L +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 488 KIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 539
             P        L+  +++ N L   +   T Q  + +E    GNPL C   L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199
              L  +R+         +    +L  L + + Q    +    + G   L  L + ++ L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI-PAWLGNL 258
                    +  +L+RL+L  N     +         L+ L +S N L+ +    WL   
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 259 SSLNDIMMAINHLQ--GPIPL 277
                  +    LQ  G  PL
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPL 148

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 36/343 (10%), Positives = 90/343 (26%), Gaps = 45/343 (13%)

Query: 140 LVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL---VIGCFNLEYLVLSE 196
           L    ++  D   S+ + + + +S+K + LS N +  E    L   +    +LE    S+
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 197 NSLH---GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPA 253
                   ++      L +        +                   ++S +    ++  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 254 WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL 313
               L       +A    +  +  +      L  +    N +        + +      L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 314 SKNMLYGPLKYGTFFNRSSIVTL-------------DLSYNSFSGNIPYWIERLTRLRYL 360
               +              +  L             +   +  S  +   ++    LR L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 361 ILANNNLEGEVPNQL------CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSS 414
            L +  L       +           L+ + L  N +       L               
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK-------- 300

Query: 415 APTRYKGKPLNKMYGVDLSCNKLT--GEIPPQIGKLTSIRALN 455
                    +  +  ++L+ N+ +   ++  +I ++ S R   
Sbjct: 301 ---------MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 44/338 (13%), Positives = 87/338 (25%), Gaps = 21/338 (6%)

Query: 58  KFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGP----FRMPIQPHW 113
           +F      L+    +  + K  F    L  + ++  +VL  N++           I    
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAV--LLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 114 HLDTLHVSKNFFQGNIPLEIGVYFPRL--VYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH 171
            L+    S  F    +  EI      L    L   +        ++ G       +D   
Sbjct: 60  DLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118

Query: 172 NQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
                E       G        ++       +  K      L  +    N       K  
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 178

Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLS 291
           +                  +         +  +++        + +   Q N    L  S
Sbjct: 179 AKTF-----QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 292 ENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI 351
              I+           +    LS       +   +      + TL L YN    +    +
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 352 -----ERLTRLRYLILANNNL--EGEVPNQLCRLKQLR 382
                E++  L +L L  N    E +V +++  +   R
Sbjct: 294 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 33/312 (10%), Positives = 77/312 (24%), Gaps = 19/312 (6%)

Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLG-------NLSSLNDIMMAINHLQGPIPLE 278
            +   L     ++ + +S N +      WL        +L       +    ++  IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 279 FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 338
              L    +     + +  +  +    +    +            Y             +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 339 SYNSFSGNIPYWIERLTRLRYLILANNNLEGE----VPNQLCRLKQLRLIDLSNNNLFGQ 394
           +       +    +    LR +I   N LE              + L  + +  N +  +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRAL 454
               L    L    +               +    + L       E+      L++  A 
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 455 NFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG-KI 513
                        S      +++L + YN +       L  +    +  +    L+G + 
Sbjct: 262 AVVDA-------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

Query: 514 PEWTAQFTTFKE 525
            E        +E
Sbjct: 315 SEEDDVVDEIRE 326

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 168 DLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEI 227
           +L   Q+  E  + ++   ++     L    L        +  + +  +    +     +
Sbjct: 3   ELKPEQV--EQLKLIMSKRYDGSQQALDLKGLR---SDPDLVAQNIDVVLNRRSSMAATL 57

Query: 228 PKSLSNCSPLEGLYMSDNNLYG--NIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYL 285
                N   L  L +S+N LY   ++ + +    +L  + ++ N L+    L+  +   L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 286 EILDLSENNISGTLPSCSS 304
           E L L  N++S T    S+
Sbjct: 118 EELWLDGNSLSDTFRDQST 136

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 21/176 (11%)

Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLS 195
               +   L + +   ++  +  D++ +  L      +   +  E+L     NL  +  S
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLN----NLTQINFS 70

Query: 196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255
            N L      K +       ++ +       +    +            +         L
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 256 GNLSSLNDIMMAINHLQGPI--------------PLEFCQLNYLEILDLSENNISG 297
             L   ++ +  I+ L G                      L  LE LD+S N +S 
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD 186

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 7/131 (5%)

Query: 354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG-DNDG 412
             R R L L    +   + N    L Q   ID S+N +  ++ G      L     +N+ 
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNR 74

Query: 413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN----LTGVIPVS 468
                    + L  +  + L+ N L                      N            
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134

Query: 469 FSNLKQVESLD 479
              + QV  LD
Sbjct: 135 IYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 436 KLTGEI---PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ 492
           KLT E+     Q       R L+     +  VI    + L Q +++D S N +       
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDG 58

Query: 493 LVELNVLAVFSVAHNNLSGKIPEWTAQFTTF 523
              L  L    V +N +              
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	623
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=9e-30  Score=250.01  Aligned_cols=259  Identities=32%  Similarity=0.540  Sum_probs=205.0

Q ss_pred             CCcEEECcCCcCcc--ccchhccCCCCCCEEECcc-ccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEE
Q 038273          236 PLEGLYMSDNNLYG--NIPAWLGNLSSLNDIMMAI-NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH  312 (623)
Q Consensus       236 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  312 (623)
                      +++.|+|+++.+.+  .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..+.           
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-----------  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-----------  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-----------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-----------
Confidence            45666666665554  3556666677777777765 566666666677777777777777766543322           


Q ss_pred             ccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCC-CEEEccCCcC
Q 038273          313 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQL-RLIDLSNNNL  391 (623)
Q Consensus       313 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l  391 (623)
                                   .+..+..|+.+++++|.+.+..|..+..++.++.+++++|.+.+.+|..+..++.+ +.+++++|++
T Consensus       120 -------------~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         120 -------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -------------cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                         14455667777777777777777778888888888888888887788877777765 7888888888


Q ss_pred             cCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCC
Q 038273          392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN  471 (623)
Q Consensus       392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  471 (623)
                      ++..|..+...                       ....++++++...+.+|..+..+++++.+++++|.+.+.+| .+..
T Consensus       187 ~~~~~~~~~~l-----------------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~  242 (313)
T d1ogqa_         187 TGKIPPTFANL-----------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL  242 (313)
T ss_dssp             EEECCGGGGGC-----------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCC
T ss_pred             ccccccccccc-----------------------ccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            87777666543                       34568889999988999999999999999999999986654 6888


Q ss_pred             CCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCC
Q 038273          472 LKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD  543 (623)
Q Consensus       472 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~  543 (623)
                      +++|+.|+|++|++++.+|+.+.++++|++|+|++|+++|.+|+. ..+++|+.+++.+|+.+||.|++.|.
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccCCCCCHHHhCCCccccCCCCCCCC
Confidence            999999999999999999999999999999999999999999974 58899999999999999999999884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.1e-26  Score=233.18  Aligned_cols=147  Identities=24%  Similarity=0.365  Sum_probs=91.0

Q ss_pred             ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273          327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  406 (623)
Q Consensus       327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  406 (623)
                      +..+++|+.+++++|.+++..+  +..+++|+.|+++++++.+..  .+..++.++.+++++|.+.+..  .+.      
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~------  304 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS------  304 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG------
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccc------
Confidence            3444555555555555553322  455566666666666655322  2555666666666666654311  111      


Q ss_pred             CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273          407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN  486 (623)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (623)
                                      .+++++.|++++|++++..  .+..+++|++|++++|.+++. + .+.++++|++|++++|+++
T Consensus       305 ----------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         305 ----------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ----------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCC
T ss_pred             ----------------hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCC
Confidence                            2346666777777666432  367778888888888887743 2 5777888888888888887


Q ss_pred             ccCccccccCCCCCeeecccC
Q 038273          487 GKIPPQLVELNVLAVFSVAHN  507 (623)
Q Consensus       487 ~~~p~~~~~l~~L~~L~l~~N  507 (623)
                      +..|  +.++++|+.|++++|
T Consensus       365 ~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         365 DLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             BCGG--GTTCTTCSEEECCCE
T ss_pred             CChh--hccCCCCCEeeCCCC
Confidence            6543  677888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-26  Score=235.55  Aligned_cols=342  Identities=21%  Similarity=0.228  Sum_probs=218.5

Q ss_pred             CCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCC
Q 038273          111 PHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLE  190 (623)
Q Consensus       111 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  190 (623)
                      .+.+|++|+++++.++ .+. .+.. +++|++|++++|++++. + .++++++|++|++++|++. .+++  +.++++|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~-gl~~-L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SID-GVEY-LNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-TGGG-CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred             HhCCCCEEECCCCCCC-Ccc-cccc-CCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc-cccc--cccccccc
Confidence            4456667777766665 332 3332 56667777776666643 2 2666666666666666665 4443  34566666


Q ss_pred             EEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccc
Q 038273          191 YLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH  270 (623)
Q Consensus       191 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  270 (623)
                      .|+++++.+.+...  ......+.......+.+....+................     .....+...+.........+.
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccc
Confidence            66666665544322  12233444444444433322211111111111111111     111122222333333333332


Q ss_pred             ccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchh
Q 038273          271 LQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW  350 (623)
Q Consensus       271 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  350 (623)
                      ..  ....+..+++++                       .+.+++|.+.+..+   +..+++|++|++++|.+++.  ..
T Consensus       187 ~~--~~~~~~~l~~~~-----------------------~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLE-----------------------SLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GT  236 (384)
T ss_dssp             CC--CCGGGGGCTTCS-----------------------EEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cc--cccccccccccc-----------------------eeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--ch
Confidence            22  122233444444                       44444444433322   45567899999999998853  36


Q ss_pred             hhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEE
Q 038273          351 IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV  430 (623)
Q Consensus       351 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L  430 (623)
                      +..+++|+.+++++|.+.+..  .+..+++|+.++++++++.+..+  +                      ..++.++.+
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~----------------------~~~~~l~~l  290 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--L----------------------AGLTALTNL  290 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--G----------------------TTCTTCSEE
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--c----------------------ccccccccc
Confidence            788999999999999998543  37889999999999999875432  1                      124588999


Q ss_pred             EccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccc
Q 038273          431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS  510 (623)
Q Consensus       431 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  510 (623)
                      ++++|.+++  +..+..+++++.|++++|.+++..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|+++
T Consensus       291 ~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            999999975  345888999999999999999764  38899999999999999984 44 6899999999999999999


Q ss_pred             ccCCCCccccCCCCCccccCC
Q 038273          511 GKIPEWTAQFTTFKEDSYEGN  531 (623)
Q Consensus       511 ~~~~~~~~~~~~l~~l~l~~N  531 (623)
                      +..|  +.++++|+.+++++|
T Consensus       365 ~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         365 DLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             BCGG--GTTCTTCSEEECCCE
T ss_pred             CChh--hccCCCCCEeeCCCC
Confidence            8766  778999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.5e-27  Score=233.97  Aligned_cols=248  Identities=27%  Similarity=0.423  Sum_probs=149.1

Q ss_pred             cccEEEccCCCCCCC--CCcccCCCCCCcEEEccC-CCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCE
Q 038273           41 QLESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSD-SNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDT  117 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  117 (623)
                      ++++|+|+++.+.+.  +|..++++++|++|++++ |.++|.+|..+ .++++|++|++++|++.+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcc
Confidence            577777777776653  566777777777777765 56666677664 66777777777777776666666666666667


Q ss_pred             EEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCC-CEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273          118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL-KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE  196 (623)
Q Consensus       118 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  196 (623)
                      +++++|.+.+.+|..+.. ++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+ ..+ ....++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~-~~l-~~~~l~l~~  206 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANL-NLAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGC-CCSEEECCS
T ss_pred             cccccccccccCchhhcc-Ccccceeeccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccc
Confidence            766666666566666554 5566666666666666666666665554 566666666664444333 333 233556655


Q ss_pred             CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273          197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP  276 (623)
Q Consensus       197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  276 (623)
                      +...+..+..+..+++++.++++++.+.+..+ .+..+++|+.|++++|++++.+|..++++++|++|++++|++++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            55555555555555555666655555554332 34555555555555555555555555555555555555555555444


Q ss_pred             ccccCCCCCcEEeCcCcc
Q 038273          277 LEFCQLNYLEILDLSENN  294 (623)
Q Consensus       277 ~~~~~l~~L~~L~l~~n~  294 (623)
                      . +..+++|+.+++++|+
T Consensus       286 ~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             C-STTGGGSCGGGTCSSS
T ss_pred             C-cccCCCCCHHHhCCCc
Confidence            2 3445555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.1e-24  Score=210.66  Aligned_cols=198  Identities=21%  Similarity=0.231  Sum_probs=89.7

Q ss_pred             CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcC
Q 038273          165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD  244 (623)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  244 (623)
                      +.++.++.+++ .+|..+   .+++++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|+.|++++
T Consensus        13 ~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            33444444444 444332   23344444444444433333444444444444444444444444455555555555555


Q ss_pred             CcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC
Q 038273          245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY  324 (623)
Q Consensus       245 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  324 (623)
                      |+++.. |..+  ...++.|.+.+|.+.+..+..+.....+..++...|....                      .....
T Consensus        89 n~l~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~~~  143 (305)
T d1xkua_          89 NQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIEN  143 (305)
T ss_dssp             SCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCT
T ss_pred             CccCcC-ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cCCCc
Confidence            554422 2211  2344555555555554444444444445555444443210                      00111


Q ss_pred             CCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCC
Q 038273          325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ  394 (623)
Q Consensus       325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  394 (623)
                      ..+..+++|+.+++++|.+.. ++..  .+++|+.|++++|......+..+..++.++.|++++|.+.+.
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence            124444555555555555442 2211  134555555555555555555555555555555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.7e-24  Score=208.11  Aligned_cols=244  Identities=26%  Similarity=0.327  Sum_probs=165.5

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ..+.++-++.+++ .+|..+.  +++++|++++|.++ .+|+..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5667777777666 4455443  57888888888887 677665677888888888888887777777888888888888


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc-ccchHHhhCCCCCCEEEcccCcC
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSL  199 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l  199 (623)
                      ++|+++ .+|....   +.++.|++.+|.+....+..+.....++.++...+.... ......+..+++|+.+++++|.+
T Consensus        87 ~~n~l~-~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccC-cCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            888877 6665443   477777777777776555666667777777777664331 12233445667777777777766


Q ss_pred             ccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccc
Q 038273          200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF  279 (623)
Q Consensus       200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  279 (623)
                      ... +..  .+++|+.|++++|......+..+..++.+++|++++|.+.+..+..+.++++|++|++++|+++. +|..+
T Consensus       163 ~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l  238 (305)
T d1xkua_         163 TTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL  238 (305)
T ss_dssp             CSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTT
T ss_pred             ccc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccccc
Confidence            532 222  24567777777776666666666777777777777777766666666677777777777776663 35566


Q ss_pred             cCCCCCcEEeCcCccce
Q 038273          280 CQLNYLEILDLSENNIS  296 (623)
Q Consensus       280 ~~l~~L~~L~l~~n~~~  296 (623)
                      ..+++|++|++++|+++
T Consensus       239 ~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCSSCCEEECCSSCCC
T ss_pred             ccccCCCEEECCCCccC
Confidence            66677777777776665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-24  Score=207.30  Aligned_cols=206  Identities=20%  Similarity=0.229  Sum_probs=109.9

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN  144 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~  144 (623)
                      ++++|+|++|+++ .+|...|.++++|++|++++|++....+..+...+.++.++...                      
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~----------------------   89 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD----------------------   89 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS----------------------
T ss_pred             CCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence            4555555555555 44544445555555555555555554444455555555554432                      


Q ss_pred             cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273          145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                        .+.++...+..|+++++|++|++++|.+. .++...+....+|+.+++++|.+++..+..+..+++|+.|++++|+++
T Consensus        90 --~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          90 --NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             --CTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             --ccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence              22333333444445555555555555444 344334444455555555555554444444555555555555555555


Q ss_pred             cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273          225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS  296 (623)
Q Consensus       225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  296 (623)
                      ...+.+|.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            555555555566666666666655555555666666666666666665555555666666666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-24  Score=203.43  Aligned_cols=210  Identities=24%  Similarity=0.231  Sum_probs=171.6

Q ss_pred             CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273          306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID  385 (623)
Q Consensus       306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  385 (623)
                      ..+.+++.+++.++ .+|.. +  .+++++|+|++|++++..+..|..+++|++|++++|+++. ++ .+..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~-l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcC-c--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            34455566666654 34543 2  2578999999999987777788899999999999999874 33 357889999999


Q ss_pred             ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273          386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI  465 (623)
Q Consensus       386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  465 (623)
                      +++|++.+. +..+.                      .+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...
T Consensus        84 Ls~N~l~~~-~~~~~----------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          84 LSHNQLQSL-PLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             CCSSCCSSC-CCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccccccccc-ccccc----------------------cccccccccccccccceeeccccccccccccccccccccceec
Confidence            999998754 22222                      3468999999999999888888899999999999999999888


Q ss_pred             CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCC
Q 038273          466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVA  545 (623)
Q Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~  545 (623)
                      +..+..+++|+.|++++|++++..++.|..+++|++|+|++|+++ .+|+.+..+++|+.++++||||.|     +|+..
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C-----dC~~~  214 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC-----NCEIL  214 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC-----SGGGH
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC-----CcchH
Confidence            889999999999999999999888888999999999999999999 677777789999999999999999     55544


Q ss_pred             CCCCC
Q 038273          546 AVPEA  550 (623)
Q Consensus       546 ~~~~~  550 (623)
                      |+..|
T Consensus       215 ~l~~w  219 (266)
T d1p9ag_         215 YFRRW  219 (266)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-23  Score=203.18  Aligned_cols=224  Identities=20%  Similarity=0.161  Sum_probs=172.2

Q ss_pred             cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273           17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL   96 (623)
Q Consensus        17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (623)
                      .+++.+++.++.. |..   ++ .++++|+|++|++++..+.+|.++++|++|++++|.+. .++...+..+..++.+..
T Consensus        14 ~~v~c~~~~L~~i-P~~---ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~   87 (284)
T d1ozna_          14 VTTSCPQQGLQAV-PVG---IP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL   87 (284)
T ss_dssp             CEEECCSSCCSSC-CTT---CC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCCCCCCcc-CCC---CC-CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccc
Confidence            3456666665533 221   22 27999999999998777788999999999999999998 666666788899999887


Q ss_pred             c-CCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCC
Q 038273           97 R-NNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLT  175 (623)
Q Consensus        97 ~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  175 (623)
                      . .+.++...+..+.++++|++|++++|.+. .++...+...++|+.+++++|.+++..+..|+.+++|++|++++|+++
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence            5 55677777888999999999999999887 566666666778899999998888766777888888888888888887


Q ss_pred             cccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc
Q 038273          176 GEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY  248 (623)
Q Consensus       176 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  248 (623)
                       .++...|.++++|+.+++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus       167 -~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         167 -SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             -ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence             777777777888888888877777666666666666777777766666655566666666666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=184.69  Aligned_cols=196  Identities=26%  Similarity=0.221  Sum_probs=104.7

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      .+.+++.++++++. +|..+.  +++++|+|++|.++ .+|...|.++++|++|+|++|+++...  .+..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            34556666666653 454332  35667777777666 555555566667777777766665432  2345566666666


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|++. ..+..+.. +++|+.|++++|.+....+..+..+.++++|++++|.+. .++...+..+++++.+++++|.++
T Consensus        85 s~N~l~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             CSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccc-cccccccc-ccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhccccccccc
Confidence            666655 33333222 455555555555555444455555555555555555555 455544445555555555555554


Q ss_pred             cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCc
Q 038273          201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNN  246 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  246 (623)
                      +..+..+..+++|++|++++|+++ .+|+.+..+++|+.|+|++|.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            444444444444444444444444 333333344444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=7.5e-18  Score=167.34  Aligned_cols=95  Identities=27%  Similarity=0.345  Sum_probs=49.9

Q ss_pred             CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEc
Q 038273           90 NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDL  169 (623)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  169 (623)
                      ++++|+|+++.++. +|+.   .++|++|++++|+++ .+|..    ..+|+.|++++|.++. ++. +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            56666666666654 3322   345666666666666 55543    2356666666665552 221 1  124556666


Q ss_pred             cCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      ++|.+. .+|.  +..+++|++|+++++.+.
T Consensus       106 ~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         106 SNNQLE-KLPE--LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSSCCS-SCCC--CTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccc--hhhhccceeecccccccc
Confidence            666555 4543  234555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=1.9e-17  Score=164.28  Aligned_cols=179  Identities=26%  Similarity=0.336  Sum_probs=88.6

Q ss_pred             CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273           65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN  144 (623)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~  144 (623)
                      ++++||++++.++ .+|+    ..++|++|++++|+++. +|..   ..+|++|++++|.++ .++.    ..+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            4555555555555 4553    23455566666555553 2322   235566666666555 3432    123577777


Q ss_pred             cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273          145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      +++|.+. .+|. ++.+++|++|+++++.+. ..+.    ....+..+.+..+...  ....+..++.++.+.+++|...
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccc-cccc----ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            7777766 3443 466777777777777665 3332    2345556655544332  1233444555566666555544


Q ss_pred             cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273          225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ  272 (623)
Q Consensus       225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  272 (623)
                      .. +   ......+.+...++.+. ..+ .+..++.|+.+++++|...
T Consensus       176 ~~-~---~~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         176 KL-P---DLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             SC-C---CCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             cc-c---ccccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            21 1   11122344444443332 111 2334555555555555433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.2e-21  Score=198.61  Aligned_cols=63  Identities=16%  Similarity=0.048  Sum_probs=35.9

Q ss_pred             CccEEEccCCccccc----CCccccccccCCeeeCCCCcccccCCc----cCC-CCCCCcEEECCCCccccc
Q 038273          426 KMYGVDLSCNKLTGE----IPPQIGKLTSIRALNFSHNNLTGVIPV----SFS-NLKQVESLDVSYNNLNGK  488 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~-~l~~L~~L~Ls~n~l~~~  488 (623)
                      .|++|++++|.+++.    +...+..+++|++|++++|+++.....    .+. +...|+.|++++|.+...
T Consensus       370 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            455566666655432    233455567777777777777643222    222 233577777777776643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-20  Score=193.86  Aligned_cols=163  Identities=17%  Similarity=0.096  Sum_probs=73.8

Q ss_pred             CCceeEEeCCCCcCCCCC----chhhhccccCcEEEcccccccccCchh-----hcCCCCCCEEEccCCcCcCCCCCccc
Q 038273          330 RSSIVTLDLSYNSFSGNI----PYWIERLTRLRYLILANNNLEGEVPNQ-----LCRLKQLRLIDLSNNNLFGQIPGCLD  400 (623)
Q Consensus       330 ~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~  400 (623)
                      ...++.+++++|.+....    ...+...+.++.+++++|++.......     ....+.|+.+++++|.+.......+.
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            455666666666554321    122344556666666666654321111     12234566666666655432211111


Q ss_pred             cccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc----CCcccc-ccccCCeeeCCCCccccc----CCccCCC
Q 038273          401 NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE----IPPQIG-KLTSIRALNFSHNNLTGV----IPVSFSN  471 (623)
Q Consensus       401 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~~----~~~~~~~  471 (623)
                      ...                  ...++|++|+|++|.+++.    +++.+. ..+.|++|+|++|.+++.    +.+.+..
T Consensus       334 ~~~------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  395 (460)
T d1z7xw1         334 SVL------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA  395 (460)
T ss_dssp             HHH------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             ccc------------------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhc
Confidence            100                  0123455566666555432    111221 234456666666655432    2233444


Q ss_pred             CCCCcEEECCCCcccccCccc----cc-cCCCCCeeecccCccc
Q 038273          472 LKQVESLDVSYNNLNGKIPPQ----LV-ELNVLAVFSVAHNNLS  510 (623)
Q Consensus       472 l~~L~~L~Ls~n~l~~~~p~~----~~-~l~~L~~L~l~~N~l~  510 (623)
                      .++|++|+|++|+++......    +. ....|+.|++.+|.+.
T Consensus       396 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            555666666666554321111    11 2224555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-18  Score=161.71  Aligned_cols=217  Identities=15%  Similarity=0.124  Sum_probs=102.2

Q ss_pred             EEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEeccc
Q 038273           68 YVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSR  147 (623)
Q Consensus        68 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~  147 (623)
                      +++.++..++ .+|..++   +++++|++++|+++...+.+|.++++|++|++++|.+.+.++...+..+++++++.+..
T Consensus        12 ~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4444444444 4443321   24455555555554444444455555555555555444333433333344555555433


Q ss_pred             -CcccccCCcccCCCCCCCEEEccCCcCCcccch-HHhhCCCCCCEEEcccCcCccccccccccCC-CCCEEecccccCc
Q 038273          148 -NDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE-HLVIGCFNLEYLVLSENSLHGQLFYKKIYLR-KLARLHLDANYCT  224 (623)
Q Consensus       148 -n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~  224 (623)
                       +.+....+..|.++++|+++++++|.+. ..+. .....+..+..+...++.+.......+..++ .++.+++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             3444444455555566666666655554 3322 1112233333334444444444444444433 4555666666555


Q ss_pred             cccCccCcCCCCCcEE-ECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeC
Q 038273          225 GEIPKSLSNCSPLEGL-YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL  290 (623)
Q Consensus       225 ~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  290 (623)
                      ...+..+. .++++.+ .+.+|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            43333332 2333333 34555555444445566666666666666665444444555544444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.9e-18  Score=159.58  Aligned_cols=201  Identities=13%  Similarity=0.032  Sum_probs=105.6

Q ss_pred             cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273           17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL   96 (623)
Q Consensus        17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (623)
                      ++++.++.+++.. |..   ++ .++++|++++|++....+.+|.++++|++|++++|.+.+.++...|.++++++++.+
T Consensus        11 ~~i~c~~~~l~~i-P~~---l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVTEI-PSD---LP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCSSC-CSC---SC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCCCc-CCC---CC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            5666666555432 211   11 157777777777765555566777777777777776664555555566777777766


Q ss_pred             cC-CcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCC-CCCEEEccCCcC
Q 038273           97 RN-NSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN-SLKFLDLSHNQL  174 (623)
Q Consensus        97 ~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l  174 (623)
                      .. +.+....+..|.++++|+++++++|.+...-+......++.+..+...++.+....+..+..++ .++.|++++|++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            53 4555555666666777777777776665221222222233444444455555544445555443 455566666665


Q ss_pred             CcccchHHhhCCCCCCEE-EcccCcCccccccccccCCCCCEEecccccCc
Q 038273          175 TGEIPEHLVIGCFNLEYL-VLSENSLHGQLFYKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       175 ~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  224 (623)
                      + .++..++. ..+++++ ++++|.++...+..|.++++|+.|++++|+++
T Consensus       166 ~-~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         166 Q-EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             C-EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             c-cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            5 55554432 2333333 23344444333333344444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=3.2e-18  Score=153.46  Aligned_cols=176  Identities=21%  Similarity=0.263  Sum_probs=132.3

Q ss_pred             eEEeCCCCcCCCCCchhhhccccCcEEEcccccccc-cCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273          334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG  412 (623)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~  412 (623)
                      +.++.++++++ .+|..+.  +++++|+|++|+++. ..+..|..+++|+.|++++|.+.+..+..+...          
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~----------   77 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc----------
Confidence            45677777777 3454332  577888888888864 345667778888888888888877766666543          


Q ss_pred             CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccc
Q 038273          413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ  492 (623)
Q Consensus       413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  492 (623)
                                  ++|++|++++|+++...+..|.++++|++|+|++|.|+++.+++|..+++|++|+|++|.+....+ .
T Consensus        78 ------------~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~  144 (192)
T d1w8aa_          78 ------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-L  144 (192)
T ss_dssp             ------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-G
T ss_pred             ------------cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-h
Confidence                        378888888888887788889999999999999999999999999999999999999999874322 2


Q ss_pred             cccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273          493 LVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  538 (623)
Q Consensus       493 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~  538 (623)
                      ..-...++.+.+..|.+++..|..+   ..++.+++..|.+.|.++
T Consensus       145 ~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         145 AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             HHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCCC
Confidence            1112345667788888888777644   556678899999999543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7e-17  Score=149.06  Aligned_cols=188  Identities=21%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273           61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL  140 (623)
Q Consensus        61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  140 (623)
                      ..+.+|++|++++|.++ .++ . +.++++|++|++++|++++..+  +..+++|+++++++|.++ .++          
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~----------  101 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS----------  101 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG----------
T ss_pred             HHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc----------
Confidence            34455666666666555 343 2 2555666666666555544322  455555555555555444 332          


Q ss_pred             cEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccc
Q 038273          141 VYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA  220 (623)
Q Consensus       141 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  220 (623)
                                      .++.+++|+.++++++... .++.  +...+.++.+.++++.+...  ..+..+++|+.|++++
T Consensus       102 ----------------~l~~l~~L~~l~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2         102 ----------------AIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGN  160 (227)
T ss_dssp             ----------------GGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCS
T ss_pred             ----------------ccccccccccccccccccc-ccch--hccccchhhhhchhhhhchh--hhhccccccccccccc
Confidence                            2344444444444444433 2221  12344444444444443321  1233444455555555


Q ss_pred             ccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCc
Q 038273          221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLS  291 (623)
Q Consensus       221 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  291 (623)
                      |.+...  ..++++++|+.|++++|++++.  ..++++++|++|++++|++++..  .+..+++|+.|+++
T Consensus       161 n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         161 AQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             cccccc--hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            544322  2245555666666666655532  12555566666666666655432  25556666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.3e-17  Score=151.28  Aligned_cols=206  Identities=17%  Similarity=0.222  Sum_probs=139.3

Q ss_pred             CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273           15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL   94 (623)
Q Consensus        15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (623)
                      ++..++++.+++++....    -...+|++|++.+|+++. ++ .++.+++|++|++++|.+++ ++.  +..+++++++
T Consensus        20 ~~~~~~l~~~~~~d~~~~----~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l   90 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVTQ----ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP--LKNLTKITEL   90 (227)
T ss_dssp             HHHHHHTTCSSTTSEECH----HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEE
T ss_pred             HHHHHHhCCCCcCCcCCH----HHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeec-ccc--cccccccccc
Confidence            334456666655543211    112289999999999975 44 58999999999999999984 443  5899999999


Q ss_pred             EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcC
Q 038273           95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL  174 (623)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  174 (623)
                      ++++|.++..  ..+.++++|++++++++... .++. + ...+.++.+.++.+.+..  ...+.++++|+.|++++|.+
T Consensus        91 ~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~-~~~~-~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2          91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             ECCSCCCSCC--GGGTTCTTCCEEECTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCC
T ss_pred             cccccccccc--cccccccccccccccccccc-ccch-h-ccccchhhhhchhhhhch--hhhhcccccccccccccccc
Confidence            9999988753  35778999999999988876 3322 2 225678888888877663  23466777788888887777


Q ss_pred             CcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECc
Q 038273          175 TGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMS  243 (623)
Q Consensus       175 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  243 (623)
                      . ..+.  +.++++|++|++++|.+.+.  ..+.++++|++|++++|++++..  .++++++|+.|+++
T Consensus       164 ~-~~~~--l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 S-DLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             C-CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             c-cchh--hcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            6 3333  35677777777777766542  22455566666666666655332  24555666665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=4.2e-17  Score=146.03  Aligned_cols=132  Identities=20%  Similarity=0.299  Sum_probs=117.2

Q ss_pred             CCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc-cCCccccccccCCeeeCCCC
Q 038273          381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTSIRALNFSHN  459 (623)
Q Consensus       381 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n  459 (623)
                      .+.++.+++.++. +|..+                        ++++++|+|++|.|++ ..+..|..+++|+.|++++|
T Consensus        10 ~~~v~Cs~~~L~~-iP~~l------------------------p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDI------------------------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC------------------------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CCEEEEeCCCcCc-cCCCC------------------------CCCCCEEEeCCCCCcccccccccCCCceEeeeecccc
Confidence            3578888888764 33321                        2489999999999986 45677899999999999999


Q ss_pred             cccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273          460 NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  537 (623)
Q Consensus       460 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~  537 (623)
                      .+....++.|..+++|++|+|++|++....|++|.++++|++|+|++|++++..++.+..+++|+++++++||+.|++
T Consensus        65 ~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            999999999999999999999999999988999999999999999999999999999999999999999999999943

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-17  Score=159.18  Aligned_cols=225  Identities=20%  Similarity=0.155  Sum_probs=140.9

Q ss_pred             cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273           17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL   96 (623)
Q Consensus        17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (623)
                      +.||++++.+.......   +-...+..+.++........ .......+|++||++++.+++.....++.++++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~---l~~~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGR---LLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHH---HHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHH---HHhccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            47899887764332221   11114556666665544322 223455689999999988875555566789999999999


Q ss_pred             cCCcCcCcCCCCCCCCCCCCEEEccCC-CCCCCCChhhhhcCCCccEEecccCc-cccc-CCcccC-CCCCCCEEEccCC
Q 038273           97 RNNSLSGPFRMPIQPHWHLDTLHVSKN-FFQGNIPLEIGVYFPRLVYLNLSRND-FNGS-IPSSIG-DMNSLKFLDLSHN  172 (623)
Q Consensus        97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~-~l~~L~~L~l~~n  172 (623)
                      ++|.+++.....+..+++|++|+++++ .+++..-..+...+++|++|++++|. ++.. ....+. .+++|+.|+++++
T Consensus        79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            999887666666778889999999985 45422222344457889999998863 3321 122232 3467888888765


Q ss_pred             c--CCcccchHHhhCCCCCCEEEcccCc-CccccccccccCCCCCEEecccc-cCccccCccCcCCCCCcEEECcCC
Q 038273          173 Q--LTGEIPEHLVIGCFNLEYLVLSENS-LHGQLFYKKIYLRKLARLHLDAN-YCTGEIPKSLSNCSPLEGLYMSDN  245 (623)
Q Consensus       173 ~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n  245 (623)
                      .  ++......++..+++|++|++++|. +++.....+..+++|++|++++| .+++.....++.+++|+.|++.++
T Consensus       159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            2  3322233344567788888887753 55555556666667777777664 444443444556666666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.8e-16  Score=139.33  Aligned_cols=126  Identities=20%  Similarity=0.291  Sum_probs=59.4

Q ss_pred             CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273           62 NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV  141 (623)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  141 (623)
                      .++++++|+++++.++ .++.  ++.+++|++|++++|++++..+  +.++++|++|++++|.+. .++. +. .+++|+
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~-l~-~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCS
T ss_pred             HhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccc-cccc-cc-cccccc
Confidence            3455555666555555 3332  2455555555555555544322  455555555555555544 3332 22 244555


Q ss_pred             EEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      .|++++|....  ...+..+++|+.|++++|++. .++.  +..+++|++|++.+|.++
T Consensus       110 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~--l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         110 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             EEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCC
T ss_pred             ccccccccccc--ccccchhhhhHHhhhhhhhhc-cccc--cccccccccccccccccc
Confidence            55555554432  122444555555555555544 3332  234444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8e-16  Score=139.64  Aligned_cols=146  Identities=25%  Similarity=0.361  Sum_probs=61.7

Q ss_pred             CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEE
Q 038273           89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLD  168 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  168 (623)
                      .+|+.|++++|.+++..  .+..+++|++|++++|.++ .++. +. .+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-cc-cCccccccccccccccc-cc-cccccccccccc
Confidence            34445555554444321  2344444444444444444 2221 11 23445555555554442 22 244455555555


Q ss_pred             ccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc
Q 038273          169 LSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY  248 (623)
Q Consensus       169 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  248 (623)
                      +++|.+. .++.  +..+++++.+++++|.+...  ..+..+++|+.+++++|++++..  .++++++|+.|++++|+++
T Consensus       119 l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-cccc--cccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            5555443 3322  23344555555554444321  12233344444444444443221  1334444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.2e-15  Score=138.50  Aligned_cols=165  Identities=21%  Similarity=0.268  Sum_probs=98.5

Q ss_pred             CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273           62 NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV  141 (623)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~  141 (623)
                      .+.+|++|++++|.++ .++.  +..+++|++|++++|++++..  .+..+++|++|++++|+++ .+|. +.. +++|+
T Consensus        44 ~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~-l~~-l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS-LKD-LKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG-GTT-CTTCC
T ss_pred             HhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccc-ccc-ccccc
Confidence            3455666666666665 3332  255666666666666665532  2455666666666666665 3442 222 55666


Q ss_pred             EEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccc
Q 038273          142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN  221 (623)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  221 (623)
                      .|++++|.+..  ...+..+++++.+++++|.++ ..+.  +..+++|+++++++|.+.+..  .+.++++|++|++++|
T Consensus       116 ~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~-~~~~--~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         116 SLSLEHNGISD--INGLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             EEECTTSCCCC--CGGGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             ccccccccccc--ccccccccccccccccccccc-cccc--ccccccccccccccccccccc--cccCCCCCCEEECCCC
Confidence            66666666542  234666666777777776665 3332  245667777777777665432  3566677777777777


Q ss_pred             cCccccCccCcCCCCCcEEECc
Q 038273          222 YCTGEIPKSLSNCSPLEGLYMS  243 (623)
Q Consensus       222 ~~~~~~~~~~~~l~~L~~L~L~  243 (623)
                      .++.. + .+.++++|++|+|+
T Consensus       189 ~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         189 HISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCCBC-G-GGTTCTTCSEEEEE
T ss_pred             CCCCC-h-hhcCCCCCCEEEcc
Confidence            76643 2 46777777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.4e-15  Score=134.23  Aligned_cols=159  Identities=25%  Similarity=0.346  Sum_probs=117.3

Q ss_pred             cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273           41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV  120 (623)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (623)
                      ++++|++++|++... + .++.+++|++|++++|.++ .++.  +.++++|++|++++|.+....  .+.++++|+.|++
T Consensus        41 ~l~~L~l~~~~i~~l-~-~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l  113 (199)
T d2omxa2          41 QVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  113 (199)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             CCCEEECCCCCCCCc-c-ccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            788888888887643 2 4677888888888888887 4443  478888888888888876533  4778888888888


Q ss_pred             cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273          121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH  200 (623)
Q Consensus       121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  200 (623)
                      +++... .++ .+. .+++|+.|++++|.+.. + ..+..+++|+.|++.+|+++ .++.  +.++++|++|++++|+++
T Consensus       114 ~~~~~~-~~~-~~~-~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         114 FNNQIT-DID-PLK-NLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-DLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CSSCCC-CCG-GGT-TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccc-ccc-ccc-hhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-CCcc--ccCCCCCCEEECCCCCCC
Confidence            888776 333 233 36788899998888773 3 35788888999999988887 5654  467888888888888876


Q ss_pred             cccccccccCCCCCEE
Q 038273          201 GQLFYKKIYLRKLARL  216 (623)
Q Consensus       201 ~~~~~~~~~~~~L~~L  216 (623)
                      +.  ..+..+++|++|
T Consensus       186 ~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         186 DI--SVLAKLTNLESL  199 (199)
T ss_dssp             CC--GGGGGCTTCSEE
T ss_pred             CC--ccccCCCCCCcC
Confidence            53  245566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.3e-16  Score=147.97  Aligned_cols=224  Identities=16%  Similarity=0.164  Sum_probs=150.2

Q ss_pred             cEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecc
Q 038273           67 EYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLS  146 (623)
Q Consensus        67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~  146 (623)
                      +.+|++++.+.......++.  .....+.++...+... ........+|++||++++.+.+.....+...+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788877665333333332  2455666665544332 22334556899999998887755555666778899999999


Q ss_pred             cCcccccCCcccCCCCCCCEEEccCC-cCCcccchHHhhCCCCCCEEEcccCc-Ccccc-ccccc-cCCCCCEEecccc-
Q 038273          147 RNDFNGSIPSSIGDMNSLKFLDLSHN-QLTGEIPEHLVIGCFNLEYLVLSENS-LHGQL-FYKKI-YLRKLARLHLDAN-  221 (623)
Q Consensus       147 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~-~~~~L~~L~l~~n-  221 (623)
                      +|.+++..+..++++++|++|++++| .+++..-..++.++++|++|++++|. ++... ...+. .+++|+.|+++++ 
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99888777788888999999999986 45422223445678999999999864 43221 12222 3468888888875 


Q ss_pred             -cCccc-cCccCcCCCCCcEEECcCC-cCccccchhccCCCCCCEEECccc-cccccccccccCCCCCcEEeCcCc
Q 038273          222 -YCTGE-IPKSLSNCSPLEGLYMSDN-NLYGNIPAWLGNLSSLNDIMMAIN-HLQGPIPLEFCQLNYLEILDLSEN  293 (623)
Q Consensus       222 -~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  293 (623)
                       .++.. +.....++++|++|++++| .+++.....+..+++|++|++++| .++......+.++++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             23321 2223356788888888876 466666777788888888888885 455545556677788888887765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=124.99  Aligned_cols=129  Identities=17%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             cCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCC
Q 038273           60 LYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPR  139 (623)
Q Consensus        60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~  139 (623)
                      +.+..++++||+++|+++ .++. ++..+++|+.|++++|+++..  ..+..+++|++|++++|.++ .+|..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            456677888888888887 5664 346788888888888888764  35778888888888888888 677666666788


Q ss_pred             ccEEecccCcccccCC-cccCCCCCCCEEEccCCcCCcccch---HHhhCCCCCCEEEc
Q 038273          140 LVYLNLSRNDFNGSIP-SSIGDMNSLKFLDLSHNQLTGEIPE---HLVIGCFNLEYLVL  194 (623)
Q Consensus       140 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l  194 (623)
                      |++|++++|+++.... ..+..+++|++|++++|+++ ..|.   .++..+++|++||-
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            8999998888874322 45778888888998888887 5553   34566888888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-15  Score=127.32  Aligned_cols=118  Identities=14%  Similarity=0.167  Sum_probs=101.5

Q ss_pred             CccEEEccCCcccccCCccccccccCCeeeCCCC-cccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273          426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN-NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV  504 (623)
Q Consensus       426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  504 (623)
                      ..+.++++++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456888998888 66788999999999999876 598888889999999999999999999888999999999999999


Q ss_pred             ccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 038273          505 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA  550 (623)
Q Consensus       505 ~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~  550 (623)
                      ++|+++...+..+. ..+++.+++++|||.|     +|+..|...|
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C-----~C~~~~l~~~  127 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPLHC-----SCALRWLQRW  127 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCCCC-----CGGGHHHHHH
T ss_pred             cCCCCcccChhhhc-cccccccccCCCcccC-----CchHHHHHHH
Confidence            99999977777664 4479999999999999     6665555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.1e-14  Score=122.44  Aligned_cols=112  Identities=17%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273            9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN   88 (623)
Q Consensus         9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l   88 (623)
                      .+.+..++|+|||++|.++......   ....+|++|++++|+++.. + .+..+++|++|++++|.++ .++..++..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~---~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l   86 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLG---ATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   86 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGG---GGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             hccCcCcCcEEECCCCCCCccCccc---cccccCCEEECCCCCCCcc-C-CcccCcchhhhhccccccc-CCCccccccc
Confidence            3444455555555555444321110   1112455555555554422 1 2444455555555555544 3443333444


Q ss_pred             CCCCEEEccCCcCcCcCC-CCCCCCCCCCEEEccCCCCC
Q 038273           89 TNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLHVSKNFFQ  126 (623)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~  126 (623)
                      ++|+.|++++|+++.... ..+..+++|++|++++|.++
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccc
Confidence            555555555554433211 22334444444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.7e-13  Score=110.53  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273           43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK  122 (623)
Q Consensus        43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  122 (623)
                      |+|++++|+++ .++ .+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+++. + .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            34555555554 222 2455555555555555555 454432 4555555555555555432 1 244444444444444


Q ss_pred             CCCC
Q 038273          123 NFFQ  126 (623)
Q Consensus       123 n~l~  126 (623)
                      |++.
T Consensus        75 N~i~   78 (124)
T d1dcea3          75 NRLQ   78 (124)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            4444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=8.7e-14  Score=136.80  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             CCCCCCEEEccCCcCCcccchH---HhhCCCCCCEEEcccCcCccc-----cccccccCCCCCEEecccccCccc----c
Q 038273          160 DMNSLKFLDLSHNQLTGEIPEH---LVIGCFNLEYLVLSENSLHGQ-----LFYKKIYLRKLARLHLDANYCTGE----I  227 (623)
Q Consensus       160 ~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~----~  227 (623)
                      ..+.|+.+++++|.+.......   .+...+.|++|++++|.+...     ....+..+++|+.|++++|.++..    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            3455666666666554211111   123455666666666665432     223345556666666666655422    2


Q ss_pred             CccCcCCCCCcEEECcCCcCccccchh----ccC--CCCCCEEECccccccccc----cccc-cCCCCCcEEeCcCccce
Q 038273          228 PKSLSNCSPLEGLYMSDNNLYGNIPAW----LGN--LSSLNDIMMAINHLQGPI----PLEF-CQLNYLEILDLSENNIS  296 (623)
Q Consensus       228 ~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~--l~~L~~L~l~~n~~~~~~----~~~~-~~l~~L~~L~l~~n~~~  296 (623)
                      ...+..+++|++|++++|.+++.....    +..  .+.|++|++++|.+....    ...+ .+.++|+.|++++|++.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            234456666677777666665432222    222  345666666666654321    1122 13556666666666553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.1e-13  Score=110.20  Aligned_cols=103  Identities=22%  Similarity=0.284  Sum_probs=87.7

Q ss_pred             cEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccC
Q 038273          428 YGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN  507 (623)
Q Consensus       428 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N  507 (623)
                      +.|++++|+++ .++ .+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.. | .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            46899999998 444 4899999999999999998 5677889999999999999999854 4 5889999999999999


Q ss_pred             cccccCC-CCccccCCCCCccccCCCCCC
Q 038273          508 NLSGKIP-EWTAQFTTFKEDSYEGNPLLC  535 (623)
Q Consensus       508 ~l~~~~~-~~~~~~~~l~~l~l~~Np~~C  535 (623)
                      +++.... ..+..+++|+.+++++||...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9986543 457788999999999999754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=5.2e-14  Score=138.43  Aligned_cols=137  Identities=16%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             CCCccEEecccCccccc----CCcccCCCCCCCEEEccCCcCCccc----chHHhhCCCCCCEEEcccCcCccc----cc
Q 038273          137 FPRLVYLNLSRNDFNGS----IPSSIGDMNSLKFLDLSHNQLTGEI----PEHLVIGCFNLEYLVLSENSLHGQ----LF  204 (623)
Q Consensus       137 l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~  204 (623)
                      .+.|+.+++++|.+...    +...+..++.|+.|++++|++....    ....+..+++|++|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34566666666655422    1222345566666666666665211    111223456677777776665432    22


Q ss_pred             cccccCCCCCEEecccccCccccC----ccCc--CCCCCcEEECcCCcCcccc----chhcc-CCCCCCEEECccccccc
Q 038273          205 YKKIYLRKLARLHLDANYCTGEIP----KSLS--NCSPLEGLYMSDNNLYGNI----PAWLG-NLSSLNDIMMAINHLQG  273 (623)
Q Consensus       205 ~~~~~~~~L~~L~l~~n~~~~~~~----~~~~--~l~~L~~L~L~~n~l~~~~----~~~l~-~l~~L~~L~l~~n~~~~  273 (623)
                      ..+..+++|++|++++|.+++...    +.+.  ..+.|++|++++|.++...    ...+. +++.|+.|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            344566677777777776654321    2222  2356888888888776432    22232 46778888888887753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=1.7e-13  Score=122.20  Aligned_cols=128  Identities=22%  Similarity=0.259  Sum_probs=82.8

Q ss_pred             eeEEeCCCC--cCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCC
Q 038273          333 IVTLDLSYN--SFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN  410 (623)
Q Consensus       333 L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~  410 (623)
                      .+.+++.+.  .+. ..+..+..+++|+.|++++|.++.. + .+..+++|+.|++++|.++. ++.....         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-ccccccc---------
Confidence            344455443  232 4566788888888888888888743 3 47778888888888888753 2322221         


Q ss_pred             CCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC-ccCCCCCCCcEEECCCCccccc
Q 038273          411 DGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP-VSFSNLKQVESLDVSYNNLNGK  488 (623)
Q Consensus       411 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~  488 (623)
                                   +++|+.|++++|.++..  ..+..+++|+.|++++|.++.... ..+..+++|+.|++++|++...
T Consensus        92 -------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          92 -------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             -------------ccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence                         13677777777777642  346667777777777777764322 3566777777777777776543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=1.6e-13  Score=122.30  Aligned_cols=127  Identities=23%  Similarity=0.235  Sum_probs=77.5

Q ss_pred             CcEEEccCC--CCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEE
Q 038273           66 LEYVDFSDS--NLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYL  143 (623)
Q Consensus        66 L~~L~ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L  143 (623)
                      .+.+++++.  .+. .++..+ ..+++|++|++++|+|+..  ..+.++++|++|++++|.++ .+|..... +++|+.|
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl-~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L   98 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATL-STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEEL   98 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHH-HHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEE
T ss_pred             cceeeeecccCchh-hhhhHH-hcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccccccc-ccccccc
Confidence            444455443  222 344443 6667777777777776643  24666677777777777766 55543322 4567777


Q ss_pred             ecccCcccccCCcccCCCCCCCEEEccCCcCCcccch-HHhhCCCCCCEEEcccCcCcc
Q 038273          144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE-HLVIGCFNLEYLVLSENSLHG  201 (623)
Q Consensus       144 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~  201 (623)
                      ++++|.++..  ..+..+++|++|++++|+++ .++. ..+..+++|++|++++|.+..
T Consensus        99 ~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          99 WISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccc--ccccccccccccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence            7777777632  34666777777777777776 5543 344667777777777776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.8e-11  Score=102.82  Aligned_cols=84  Identities=18%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             CccEEEccCC-cccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273          426 KMYGVDLSCN-KLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV  504 (623)
Q Consensus       426 ~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  504 (623)
                      ++++|++++| .++...+..|.++++|+.|++++|+|+.+.+.+|.++++|++|+|++|+++...+..+.. ..|+.|++
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccccc
Confidence            5555555443 355455566777777777777777777777777777777777777777777544444443 35777788


Q ss_pred             ccCccc
Q 038273          505 AHNNLS  510 (623)
Q Consensus       505 ~~N~l~  510 (623)
                      ++|++.
T Consensus       111 ~~Np~~  116 (156)
T d2ifga3         111 SGNPLH  116 (156)
T ss_dssp             CSSCCC
T ss_pred             CCCccc
Confidence            877775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.6e-08  Score=84.79  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             cccccccCCeeeCCCCcccccC--CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccC
Q 038273          444 QIGKLTSIRALNFSHNNLTGVI--PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKI  513 (623)
Q Consensus       444 ~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  513 (623)
                      ....+++|++|+|++|+|+...  +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|+++...
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            3445677777777777776542  234556777777777777777543323334456777777777776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.5e-08  Score=83.92  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=37.8

Q ss_pred             ccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcc-------ccccCCCCCeee
Q 038273          443 PQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP-------QLVELNVLAVFS  503 (623)
Q Consensus       443 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-------~~~~l~~L~~L~  503 (623)
                      ..+..+++|+.|++++|.++...+-.+.....|+.|++++|++.....+       .+..+|+|+.||
T Consensus        85 ~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          85 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            3456677777777777777754443333445677777777777644332       245567777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.42  E-value=5.4e-05  Score=63.89  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=41.0

Q ss_pred             CCCCCCCEEEccCC-cCCcccchH---HhhCCCCCCEEEcccCcCccccc----cccccCCCCCEEecccccCccc----
Q 038273          159 GDMNSLKFLDLSHN-QLTGEIPEH---LVIGCFNLEYLVLSENSLHGQLF----YKKIYLRKLARLHLDANYCTGE----  226 (623)
Q Consensus       159 ~~l~~L~~L~l~~n-~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~----  226 (623)
                      .+.++|+.|+++++ .+....-..   .+...+.|++|++++|.+.....    ..+...+.|++|++++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34566777777653 343221111   12344556666666666543222    2223344555555555554432    


Q ss_pred             cCccCcCCCCCcEEECcCCc
Q 038273          227 IPKSLSNCSPLEGLYMSDNN  246 (623)
Q Consensus       227 ~~~~~~~l~~L~~L~L~~n~  246 (623)
                      +..++...+.|++|++++|.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence            11233444455555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.41  E-value=6.2e-05  Score=63.48  Aligned_cols=87  Identities=11%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             CCCccEEecccC-ccccc----CCcccCCCCCCCEEEccCCcCCcccch---HHhhCCCCCCEEEcccCcCcccc----c
Q 038273          137 FPRLVYLNLSRN-DFNGS----IPSSIGDMNSLKFLDLSHNQLTGEIPE---HLVIGCFNLEYLVLSENSLHGQL----F  204 (623)
Q Consensus       137 l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~----~  204 (623)
                      .++|++|+|+++ .+...    +..++...+.|++|++++|.+......   ..+...+.|++|++++|.+....    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456666666653 34321    223455566666666666665521111   12234556666666666665422    2


Q ss_pred             cccccCCCCCEEecccccC
Q 038273          205 YKKIYLRKLARLHLDANYC  223 (623)
Q Consensus       205 ~~~~~~~~L~~L~l~~n~~  223 (623)
                      ..+...++|++|++++|..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSS
T ss_pred             HHHHhCCcCCEEECCCCcC
Confidence            2344556666666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00018  Score=60.59  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=16.8

Q ss_pred             CCccEEeccc-Cccccc----CCcccCCCCCCCEEEccCCcCC
Q 038273          138 PRLVYLNLSR-NDFNGS----IPSSIGDMNSLKFLDLSHNQLT  175 (623)
Q Consensus       138 ~~L~~L~L~~-n~i~~~----~~~~~~~l~~L~~L~l~~n~l~  175 (623)
                      ++|++|++++ +.++..    +..++...++|++|++++|.+.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            4555555554 233311    1122334455555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.59  E-value=0.00049  Score=57.73  Aligned_cols=68  Identities=7%  Similarity=0.028  Sum_probs=34.6

Q ss_pred             ccCCCCCCCEEEccC-CcCCcccchHHh---hCCCCCCEEEcccCcCccccc----cccccCCCCCEEecccccCc
Q 038273          157 SIGDMNSLKFLDLSH-NQLTGEIPEHLV---IGCFNLEYLVLSENSLHGQLF----YKKIYLRKLARLHLDANYCT  224 (623)
Q Consensus       157 ~~~~l~~L~~L~l~~-n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~  224 (623)
                      ...+.+.|++|++++ +.++...-..++   ...+.|++|++++|.+.....    ..+...+.++.+++++|.+.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344567777777776 334422211121   245667777777666554222    22334455555555555543