Citrus Sinensis ID: 038282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MILSKLSNLFLGKPKSIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAKSAADKGEMEQYNN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHEEccccHHHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccEEEEEEcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHcccHccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHccccc
Coil and Loop (DISEMBL)
milsklsnlflgkpksihLMRYRSIDSKYLSGwcqlyqgeDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQigtslgypkrgiSTFVSLVNIWNCLGrvvsgffrrPLMLTIILLVSWIGHLLIAFnvpgglnimgfnfgaqWPLVFAItseffgpknhkepeddlncigvecfKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAKSAadkgemeqynn
Flexible Loop (DISEMBL)
milsklsnlflgkpksIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAksaadkgemeqynn
Low Complexity Region (SEG)
MILSKLSNLFLGKPKSIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAKSAADKGEMEQYNN
Disordered region (IsUnstruct)
*******NLFLGKPKSIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNH***EDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQ*********************
Disordered Region (DISOPRED)
MI****************************************TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKS*************************
Disordered Region (DISEMBL)
MILSKLSNLFLGKPKSIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRF*******************
Disordered Region (DISPRO)
MILSKLSNLFLGKPKSIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREA****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILSKLSNLFLGKPKSIHLMRYRSIDSKYLSGWCQLYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPEDDLNCIGVECFKLSFIMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAKSAADKGEMEQYNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
297789939	556	nodulin family protein [Arabidopsis lyra	0.769	0.323	0.563	1e-59
15225053	601	major facilitator protein [Arabidopsis t	0.769	0.299	0.563	2e-59
358346702	596	Nitrate and chloride transporter [Medica	0.841	0.330	0.541	3e-59
225448934	584	PREDICTED: uncharacterized protein LOC10	0.829	0.332	0.537	3e-56
147841867	599	hypothetical protein VITISV_011832 [Viti	0.829	0.323	0.529	1e-55
359486866	675	PREDICTED: uncharacterized protein LOC10	0.829	0.287	0.521	2e-55
356574173	582	PREDICTED: uncharacterized protein LOC10	0.829	0.333	0.544	4e-55
356536338	586	PREDICTED: uncharacterized protein LOC10	0.829	0.331	0.532	4e-55
356574171	586	PREDICTED: uncharacterized protein LOC10	0.820	0.327	0.52	2e-54
351724713	598	nitrate and chloride transporter [Glycin	0.948	0.371	0.487	3e-54

>gi|297789939|ref|XP_002862889.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297308654|gb|EFH39148.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/236 (56%), Positives = 153/236 (64%), Gaps = 56/236 (23%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +G+DYTILQALFS+DMLILFLATICGVGGTL AIDNL QIG SLGYPKR +STFVSLV+I
Sbjct: 285 RGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGDSLGYPKRSVSTFVSLVSI 344

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN  GRVVSG           F RPLMLT++LL+S  GHLLIAFNVPGGL     I+GF 
Sbjct: 345 WNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFC 404

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWPL+FAI SE FG K +                                       
Sbjct: 405 FGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALG 464

Query: 165 --KEPEDDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFRE 217
             +    DLNCIG  CFKLSF I+TA TLF   VS++LV+ T+KFYKSDI+++FRE
Sbjct: 465 KTRVEGQDLNCIGTSCFKLSFIIITAVTLFGVLVSMVLVIRTKKFYKSDIYKKFRE 520

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225053|ref|NP_181454.1| major facilitator protein [Arabidopsis thaliana] gi|16930479|gb|AAL31925.1|AF419593_1 At2g39210/T16B24.15 [Arabidopsis thaliana] gi|3402684|gb|AAC28987.1| nodulin-like protein [Arabidopsis thaliana] gi|330254552|gb|AEC09646.1| major facilitator protein [Arabidopsis thaliana]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/236 (56%), Positives = 153/236 (64%), Gaps = 56/236 (23%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +G+DYTILQALFS+DMLILFLATICGVGGTL AIDNL QIG SLGYPKR +STFVSLV+I
Sbjct: 330 RGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSI 389

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN  GRVVSG           F RPLMLT++LL+S  GHLLIAFNVPGGL     I+GF 
Sbjct: 390 WNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFC 449

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWPL+FAI SE FG K +                                       
Sbjct: 450 FGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALG 509

Query: 165 --KEPEDDLNCIGVECFKLSFIMTAA-TLFSAFVSLILVLMTRKFYKSDIHQRFRE 217
             +    DLNCIG  CFKLSFI+ AA TLF   VS++LV+ T+KFYKSDI+++FRE
Sbjct: 510 KTRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKKFRE 565

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346702|ref|XP_003637404.1| Nitrate and chloride transporter [Medicago truncatula] gi|355503339|gb|AES84542.1| Nitrate and chloride transporter [Medicago truncatula]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/253 (54%), Positives = 159/253 (62%), Gaps = 56/253 (22%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFSMDMLILF+A ICGVGGTL AIDNL QIGTSL YPK+ ISTFVSLV+I
Sbjct: 331 RGEDYTILQALFSMDMLILFVACICGVGGTLTAIDNLGQIGTSLRYPKKSISTFVSLVSI 390

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV SGF          F RPLMLT+ L VS +GHLLIAF+VP GL     I+GF 
Sbjct: 391 WNYLGRVFSGFVSEHFLTKYRFPRPLMLTMTLFVSCVGHLLIAFDVPEGLYVASVIIGFC 450

Query: 144 FGAQWPLVFAITSEFFGPKNH----------------------------KEPE------- 168
           FGAQWPL+FAI SE FG K +                            KE +       
Sbjct: 451 FGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNVKIAGHLYDKEAKKQLEALG 510

Query: 169 ------DDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
                  +LNC+GV+C+KLSF I+TAAT F A VSLILV  TRKFYK DI++R+RE A  
Sbjct: 511 KQRIEGQELNCVGVDCYKLSFIIITAATFFGAVVSLILVARTRKFYKGDIYKRYREEAEM 570

Query: 222 SAADKGEMEQYNN 234
                 E  + ++
Sbjct: 571 VEVKNVEKTEEDD 583

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448934|ref|XP_002272074.1| PREDICTED: uncharacterized protein LOC100266758 [Vitis vinifera]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/253 (53%), Positives = 163/253 (64%), Gaps = 59/253 (23%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFS+DMLILF  TICGVGGTL AIDNL QIG+SLGYP++ +STF+SLV+I
Sbjct: 326 RGEDYTILQALFSIDMLILFFTTICGVGGTLTAIDNLGQIGSSLGYPQKSLSTFISLVSI 385

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV +GF          F RPLMLT+ILL+S +GHLLIAFN+  GL     I+GF 
Sbjct: 386 WNYLGRVTAGFGSEIVLDKYKFPRPLMLTLILLLSCVGHLLIAFNIKNGLYFASIIIGFC 445

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWPL+FA+ SE FG K +                                       
Sbjct: 446 FGAQWPLLFAVISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDKEGKRQMAALG 505

Query: 165 --KEPEDDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
             ++  +DL+C GVECFKLSF I+TAATLF + VSLILVL TRKFYK DI+++FRE A  
Sbjct: 506 KKRKRGEDLDCTGVECFKLSFIIITAATLFGSLVSLILVLRTRKFYKGDIYKKFREQA-- 563

Query: 222 SAADKGEMEQYNN 234
             A + EM Q  N
Sbjct: 564 -KAAETEMAQAGN 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841867|emb|CAN66928.1| hypothetical protein VITISV_011832 [Vitis vinifera]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/253 (52%), Positives = 162/253 (64%), Gaps = 59/253 (23%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFS+DM ILF  TICGVGGTL AIDNL QIG+SLGYP++ +STF+SLV+I
Sbjct: 341 RGEDYTILQALFSIDMXILFFTTICGVGGTLTAIDNLGQIGSSLGYPQKSLSTFISLVSI 400

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV +GF          F RPLMLT+ILL+S +GHLLIAFN+  GL     I+GF 
Sbjct: 401 WNYLGRVTAGFGSEIVLDKYKFPRPLMLTLILLLSCVGHLLIAFNIKNGLYFASIIIGFC 460

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWP++FA+ SE FG K +                                       
Sbjct: 461 FGAQWPILFAVISEIFGLKYYSTLYNFGAVASPIGSYLLSVRVAGYLYDKEGKRQMAALG 520

Query: 165 --KEPEDDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
             ++  +DL+C GVECFKLSF I+TAATLF + VSLILVL TRKFYK DI+++FRE A  
Sbjct: 521 IERKAGEDLDCTGVECFKLSFIIITAATLFGSLVSLILVLRTRKFYKGDIYKKFREQA-- 578

Query: 222 SAADKGEMEQYNN 234
             A + EM Q  N
Sbjct: 579 -KAAETEMAQAGN 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486866|ref|XP_002272220.2| PREDICTED: uncharacterized protein LOC100246181 [Vitis vinifera]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/253 (52%), Positives = 162/253 (64%), Gaps = 59/253 (23%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFS+DM +LF  TICGVGGTL AIDNL QIG+SLGYP + ++TF+SLV+I
Sbjct: 341 RGEDYTILQALFSIDMFVLFFTTICGVGGTLTAIDNLGQIGSSLGYPHKSLNTFISLVSI 400

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV +GF          F RPLMLT+ILL+S +GHLLIAFN+  GL     I+GF 
Sbjct: 401 WNYLGRVTAGFGSEIVLDKYKFPRPLMLTLILLLSCVGHLLIAFNIKNGLYFASIIIGFC 460

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWP+++A+ SE FG K +                                       
Sbjct: 461 FGAQWPILYAVISEIFGLKYYSTLYNFGAVASPIGSYLFNVMVAGYLYDKEGKRQMAALG 520

Query: 165 --KEPEDDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
             ++P +DL+C GVECFKLSF I+TAATLF + VSLILVL TRKFYK DI+++FRE A  
Sbjct: 521 IERKPGEDLDCTGVECFKLSFIIITAATLFGSLVSLILVLRTRKFYKGDIYKKFREQA-- 578

Query: 222 SAADKGEMEQYNN 234
             A + EM Q  N
Sbjct: 579 -KAAETEMAQAEN 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574173|ref|XP_003555226.1| PREDICTED: uncharacterized protein LOC100819661 [Glycine max]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/250 (54%), Positives = 158/250 (63%), Gaps = 56/250 (22%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFS+DMLILF+  ICGVGGTL AIDNL QIGTSL YPK+  STFVSLV+I
Sbjct: 325 RGEDYTILQALFSVDMLILFMTCICGVGGTLTAIDNLGQIGTSLRYPKKTRSTFVSLVSI 384

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV SGF          F RPLMLT+ LL+S +GHLLIAF+VP GL     I+GF 
Sbjct: 385 WNYLGRVFSGFVSEYFLQKYKFPRPLMLTLTLLLSCVGHLLIAFDVPNGLYVASVIIGFC 444

Query: 144 FGAQWPLVFAITSEFFGPKNH----------------------------KEPE------- 168
           FGAQWPL+FAI SE FG K +                            KE +       
Sbjct: 445 FGAQWPLLFAIISELFGLKYYATLYNFGSAASPLGLYVLNVKMTGYLYDKEAKKQLAALG 504

Query: 169 ------DDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
                  +LNC+GV CFKLSF I+TAAT F A VSLILV  TR FYKSDI++R+R AA +
Sbjct: 505 LKRIEGQELNCVGVHCFKLSFIIITAATFFGAIVSLILVARTRTFYKSDIYKRYRNAATE 564

Query: 222 SAADKGEMEQ 231
           S  +  E + 
Sbjct: 565 SETEMAEKDS 574

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536338|ref|XP_003536696.1| PREDICTED: uncharacterized protein LOC100776865 [Glycine max]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/250 (53%), Positives = 158/250 (63%), Gaps = 56/250 (22%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFS+DMLILF+  ICGVGGTL AIDNL QIGTSL YPK+  STFVSLV+I
Sbjct: 329 RGEDYTILQALFSVDMLILFMTCICGVGGTLTAIDNLGQIGTSLRYPKKTRSTFVSLVSI 388

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV SGF          F RPLMLT+ LL+S +GHLLIAF+VP GL     I+GF 
Sbjct: 389 WNYLGRVFSGFVSEHFLQKYKFPRPLMLTLTLLLSCVGHLLIAFDVPNGLYVASVIIGFC 448

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWPL+FAI SE FG K +                                       
Sbjct: 449 FGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNVKMTGYLYDKEAKKQLAASG 508

Query: 165 --KEPEDDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
             +E   +LNC+GV CFKLSF I+TAAT F A VSLILV  TR FY+SDI++R+R+AA +
Sbjct: 509 LTREEGHELNCVGVNCFKLSFIIITAATFFGAIVSLILVARTRTFYRSDIYKRYRDAATE 568

Query: 222 SAADKGEMEQ 231
           +  +  E + 
Sbjct: 569 AETEMAEKDS 578

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574171|ref|XP_003555225.1| PREDICTED: uncharacterized protein LOC100819121 [Glycine max]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/250 (52%), Positives = 158/250 (63%), Gaps = 58/250 (23%)

Query: 38  QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
           +GEDYTILQALFS+DMLILF+ +ICG+GGTL AIDNL QIG SL YPK+ ISTFVSLV+I
Sbjct: 326 RGEDYTILQALFSLDMLILFICSICGIGGTLTAIDNLGQIGKSLRYPKKSISTFVSLVSI 385

Query: 98  WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
           WN LGRV +GF          F RPLMLT+ +L+S +GHLLIAF+VP GL     I+GF 
Sbjct: 386 WNYLGRVFAGFVSEHYLQKYKFPRPLMLTLTMLLSCVGHLLIAFDVPNGLYAASVIIGFC 445

Query: 144 FGAQWPLVFAITSEFFGPKNH--------------------------------------- 164
           FGAQWPL+FAI SE FG K +                                       
Sbjct: 446 FGAQWPLLFAIISELFGHKYYATLYNFGSAASPLGLYVLNVVMTGHLYDKEAKKQLAALG 505

Query: 165 --KEPEDDLNCIGVECFKLSF-IMTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAK 221
             ++   +LNCIG+ CFKLSF I+TAAT F   VSLILV  TR FYK DI++R+R+AA  
Sbjct: 506 LERKEGQELNCIGIHCFKLSFIIITAATFFGVIVSLILVARTRTFYKGDIYKRYRDAA-- 563

Query: 222 SAADKGEMEQ 231
           +  D+ EM +
Sbjct: 564 TVTDQAEMAR 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724713|ref|NP_001236811.1| nitrate and chloride transporter [Glycine max] gi|57545995|gb|AAW51884.1| nitrate and chloride transporter [Glycine max]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/283 (48%), Positives = 169/283 (59%), Gaps = 61/283 (21%)

Query: 13  KPKSIHLMRYRSIDSKYLSGWCQLY----QGEDYTILQALFSMDMLILFLATICGVGGTL 68
           KP         S+ S     W  ++    +GEDYTILQALFS+DM+ILF+ATI G+GGTL
Sbjct: 303 KPNETTDGSSNSLSSNDTRWWENVFSPPARGEDYTILQALFSIDMVILFIATIFGIGGTL 362

Query: 69  LAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----------FRRPLMLTII 118
            AIDNL QIG SL YPK+ ISTFVSLV+IWN LGRV +GF          F RPLMLT+ 
Sbjct: 363 TAIDNLGQIGKSLRYPKKSISTFVSLVSIWNYLGRVFAGFVSEHYLQKYKFPRPLMLTLT 422

Query: 119 LLVSWIGHLLIAFNVPGGLN----IMGFNFGAQWPLVFAITSEFFGPKNH---------- 164
           +L+S  GHLLIAF+VP GL     I+GF FGAQWPL+FAI SE FG K +          
Sbjct: 423 MLLSCAGHLLIAFDVPNGLYAASVIIGFCFGAQWPLLFAIISELFGHKYYATLYNFGSAA 482

Query: 165 -------------------------------KEPEDDLNCIGVECFKLSF-IMTAATLFS 192
                                          ++   +LNCIG+ CFKLSF I+TAAT F 
Sbjct: 483 SPIGLYVLNVVMTGHLYDKEAKKQLAELGLERKEGQELNCIGIHCFKLSFIIITAATFFG 542

Query: 193 AFVSLILVLMTRKFYKSDIHQRFREAAAK-SAADKGEMEQYNN 234
             VSLILV  TR FYKSDI++R+R+AAA  + A+  ++E  NN
Sbjct: 543 VIVSLILVARTRTFYKSDIYKRYRDAAATVTEAEMAKVENGNN 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.534	0.207	0.719	3.3e-61
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.534	0.216	0.611	5.4e-50
TAIR|locus:1005716659	523	AT2G34355 [Arabidopsis thalian	0.517	0.231	0.392	8.4e-28
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.512	0.228	0.388	2.9e-26
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.529	0.212	0.378	5.2e-25
TAIR|locus:2011241	526	AT1G18940 [Arabidopsis thalian	0.547	0.243	0.394	1.5e-24
TAIR|locus:2027284	533	AT1G74780 [Arabidopsis thalian	0.517	0.227	0.422	1.7e-24
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.529	0.214	0.364	3e-24
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.521	0.215	0.355	7.5e-21
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.521	0.223	0.355	1.1e-20

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 100/139 (71%), Positives = 110/139 (79%)

Query:    38 QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
             +G+DYTILQALFS+DMLILFLATICGVGGTL AIDNL QIG SLGYPKR +STFVSLV+I
Sbjct:   330 RGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSI 389

Query:    98 WNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN 143
             WN  GRVVSG           F RPLMLT++LL+S  GHLLIAFNVPGGL     I+GF 
Sbjct:   390 WNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFC 449

Query:   144 FGAQWPLVFAITSEFFGPK 162
             FGAQWPL+FAI SE FG K
Sbjct:   450 FGAQWPLLFAIISEIFGLK 468

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 5.4e-50, Sum P(2) = 5.4e-50
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query:    38 QGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI 97
             +GEDYTILQAL S DM+ILF+AT CG+G +L A+DNL QIG SLGYP   +S+FVSLV+I
Sbjct:   321 RGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSI 380

Query:    98 WNCLGRVVSGFFR----------RPLMLTIILLVSWIGHLLIAFNVPGGLNI----MGFN 143
             WN  GRV SGF            RPLM+T++LL+S  GHLLIAF VPG + I    MGF+
Sbjct:   381 WNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFS 440

Query:   144 FGAQWPLVFAITSEFFGPK 162
             FGAQ PL+FAI SE FG K
Sbjct:   441 FGAQLPLLFAIISELFGLK 459

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 53/135 (39%), Positives = 81/135 (60%)

Query:    40 EDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWN 99
             ED  IL+A+ +++  +LFLA +CG+G     ++N+RQIG SL Y    +++ VSL +IWN
Sbjct:   302 EDSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWN 361

Query:   100 CLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFNFG 145
              LGR  +G+          + RP+ + I L V  IGH+++A  V G L     ++G  +G
Sbjct:   362 FLGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYG 421

Query:   146 AQWPLVFAITSEFFG 160
             +QW L+  ITSE FG
Sbjct:   422 SQWSLMPTITSEIFG 436

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
 Identities = 52/134 (38%), Positives = 79/134 (58%)

Query:    41 DYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNC 100
             D  +L+A+ + +  +LF+A ICG+G  L  I+N+RQ+G SL Y    +++ VSL +IWN 
Sbjct:   305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364

Query:   101 LGRVVSGFFR----------RPLMLTIILLVSWIGHLLIAFNVPGGLNI----MGFNFGA 146
             LGR  SG+            RP+ + I L +  IGH+++A  + G L I    +G  +G+
Sbjct:   365 LGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGS 424

Query:   147 QWPLVFAITSEFFG 160
             QW L+  ITSE FG
Sbjct:   425 QWSLMPTITSEIFG 438

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
 Identities = 53/140 (37%), Positives = 79/140 (56%)

Query:    37 YQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVN 96
             ++GED+T+ QAL   D  ++F + + G G  L  IDNL Q+  SLGY    +  FVS+++
Sbjct:   353 HRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMIS 410

Query:    97 IWNCLGRVVSGFFR----------RPLMLTIILLVSWIGHLLIAFNVPGGLNI----MGF 142
             IWN LGR+  G+F           RP+ + +  LV  +GH+  A+  PG ++I    +G 
Sbjct:   411 IWNFLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGL 470

Query:   143 NFGAQWPLVFAITSEFFGPK 162
              +GA W +V A  SE FG K
Sbjct:   471 GYGAHWAIVPATASELFGLK 490

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 56/142 (39%), Positives = 82/142 (57%)

Query:    36 LYQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLV 95
             L + +   +LQA+ ++D  +LFLA ICG+G  +  I+N+RQIG SL Y    I++ ++L 
Sbjct:   300 LDEDKSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALW 359

Query:    96 NIWNCLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMG 141
             NIWN +GR   G+          + RPL++   L    IGHL+IA    G L     I+G
Sbjct:   360 NIWNFIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVG 419

Query:   142 FNFGAQWPLVFAITSEFFGPKN 163
               +G+QW L+  ITSE FG K+
Sbjct:   420 ICYGSQWSLMPTITSELFGVKH 441

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 57/135 (42%), Positives = 78/135 (57%)

Query:    40 EDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWN 99
             E+  +LQA+  +   +LFLA ICG+G  L  I+N+RQIG SL Y    I++ VSL +IWN
Sbjct:   311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370

Query:   100 CLGRVVSGF----------FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFNFG 145
              LGR  +G+          + RPL++   L    IGHL+IA    G L     I+G  +G
Sbjct:   371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430

Query:   146 AQWPLVFAITSEFFG 160
             +QW L+  ITSE FG
Sbjct:   431 SQWSLMPTITSELFG 445

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 51/140 (36%), Positives = 77/140 (55%)

Query:    37 YQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVN 96
             ++GED+T+ QAL   D  ++F + + G G  L  IDNL Q+  SLGY    +   VS+++
Sbjct:   348 HRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--LVSMIS 405

Query:    97 IWNCLGRVVSGFFR----------RPLMLTIILLVSWIGHLLIAFNVPGGLNI----MGF 142
             IWN LGR+  G+F           RP+ + +  L+  +GH+  A+  PG + I    +G 
Sbjct:   406 IWNFLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGL 465

Query:   143 NFGAQWPLVFAITSEFFGPK 162
              +GA W +V A  SE FG K
Sbjct:   466 GYGAHWAIVPATASELFGLK 485

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
 Identities = 49/138 (35%), Positives = 80/138 (57%)

Query:    39 GEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIW 98
             GE++TI++A+ ++D  +LF++ +CGVG  L  ++N+ QIG +LGY    +S FVS+ +IW
Sbjct:   337 GEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTD--VSIFVSMTSIW 394

Query:    99 NCLGRVVSG-----FFR-----RPLMLTIILLVSWIGHLLIAFNVPGGLNI----MGFNF 144
                GR++SG     F +     RPL      ++  +G+LL+A  +PG L I    +G  +
Sbjct:   395 GFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCY 454

Query:   145 GAQWPLVFAITSEFFGPK 162
             G +  +     SE FG K
Sbjct:   455 GVRLAITVPTASELFGLK 472

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 49/138 (35%), Positives = 79/138 (57%)

Query:    39 GEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIW 98
             GED+TI++A+ ++D  +LF++ +CGVG  L  ++N+ QIG +LGY    +S FVS+ +IW
Sbjct:   316 GEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTN--VSIFVSMTSIW 373

Query:    99 NCLGRVVSG-----FFR-----RPLMLTIILLVSWIGHLLIAFNVPGGLNI----MGFNF 144
                GR++SG     F +     RPL      ++  +G++L+A  VP  L I    +G  +
Sbjct:   374 GFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCY 433

Query:   145 GAQWPLVFAITSEFFGPK 162
             G +  +     SE FG K
Sbjct:   434 GVRLAITVPTASELFGLK 451

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.100__1__AT2G39210.1 annotation not avaliable (556 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	8e-10

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 57.5 bits (139), Expect = 8e-10
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 39  GEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIW 98
            +DYT+ + L +    +L+L+        LL I   +  G SLG     +   VS+ +I+
Sbjct: 193 VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252

Query: 99  NCLGRVVSGFFR----RPLMLTIILLVSWIGHLLIAF-------NVPGGLNIMGFNFGAQ 147
           N  GR   G       R   ++I+  +S +G   + F            + ++ F +G  
Sbjct: 253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312

Query: 148 WPLVFAITSEFFGPKN 163
             L  ++ S+ FGP N
Sbjct: 313 ISLFPSLVSDIFGPAN 328

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
PTZ00207	591	hypothetical protein; Provisional	99.89
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.57
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.31
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.09
PRK09705	393	cynX putative cyanate transporter; Provisional	99.08
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.03
PLN00028	476	nitrate transmembrane transporter; Provisional	98.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.92
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.92
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.83
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.82
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.8
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.8
PRK03699	394	putative transporter; Provisional	98.78
PRK10091	382	MFS transport protein AraJ; Provisional	98.78
PRK10091	382	MFS transport protein AraJ; Provisional	98.74
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.73
TIGR00893	399	2A0114 d-galactonate transporter.	98.72
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.71
PRK09528	420	lacY galactoside permease; Reviewed	98.7
PRK11663	434	regulatory protein UhpC; Provisional	98.7
PRK11663	434	regulatory protein UhpC; Provisional	98.69
PRK10504	471	putative transporter; Provisional	98.67
PRK03545	390	putative arabinose transporter; Provisional	98.66
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.65
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.64
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.63
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.63
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.61
PRK03699	394	putative transporter; Provisional	98.61
TIGR00891	405	2A0112 putative sialic acid transporter.	98.61
PRK10054	395	putative transporter; Provisional	98.58
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.58
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.58
PRK09952	438	shikimate transporter; Provisional	98.57
PRK10642	490	proline/glycine betaine transporter; Provisional	98.56
PRK05122	399	major facilitator superfamily transporter; Provisi	98.55
PRK10489	417	enterobactin exporter EntS; Provisional	98.55
TIGR00895	398	2A0115 benzoate transport.	98.55
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.55
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.55
TIGR00893	399	2A0114 d-galactonate transporter.	98.55
PRK03633	381	putative MFS family transporter protein; Provision	98.54
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.53
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.52
TIGR00900	365	2A0121 H+ Antiporter protein.	98.52
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.49
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.49
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.48
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.47
PRK09528	420	lacY galactoside permease; Reviewed	98.47
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.47
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.46
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.44
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.44
PRK03545	390	putative arabinose transporter; Provisional	98.44
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.43
PRK10133	438	L-fucose transporter; Provisional	98.43
PRK11043	401	putative transporter; Provisional	98.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.42
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.42
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.39
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.39
PRK03893	496	putative sialic acid transporter; Provisional	98.39
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.39
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.38
PRK09874	408	drug efflux system protein MdtG; Provisional	98.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.36
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.36
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.35
PRK12307	426	putative sialic acid transporter; Provisional	98.34
PRK11902	402	ampG muropeptide transporter; Reviewed	98.34
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.34
PRK03893	496	putative sialic acid transporter; Provisional	98.33
PRK09705	393	cynX putative cyanate transporter; Provisional	98.33
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.32
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.31
PRK09874	408	drug efflux system protein MdtG; Provisional	98.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.29
PRK12307	426	putative sialic acid transporter; Provisional	98.28
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.26
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.26
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.26
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.25
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.24
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.24
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.22
PRK11010	491	ampG muropeptide transporter; Validated	98.21
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.21
PRK12382	392	putative transporter; Provisional	98.2
PRK10489	417	enterobactin exporter EntS; Provisional	98.18
PRK15075	434	citrate-proton symporter; Provisional	98.18
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.17
PRK10429	473	melibiose:sodium symporter; Provisional	98.17
PRK10054	395	putative transporter; Provisional	98.15
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.15
PLN00028	476	nitrate transmembrane transporter; Provisional	98.15
TIGR00900	365	2A0121 H+ Antiporter protein.	98.13
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.12
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.11
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.1
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.09
PRK12382	392	putative transporter; Provisional	98.08
PRK03633	381	putative MFS family transporter protein; Provision	98.08
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.06
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.05
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.05
PRK05122	399	major facilitator superfamily transporter; Provisi	98.05
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.04
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.03
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.03
TIGR00901	356	2A0125 AmpG-related permease.	98.03
TIGR00898	505	2A0119 cation transport protein.	98.01
PRK10504	471	putative transporter; Provisional	97.99
PRK15011	393	sugar efflux transporter B; Provisional	97.99
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.99
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.98
TIGR00898	505	2A0119 cation transport protein.	97.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.93
TIGR00891	405	2A0112 putative sialic acid transporter.	97.9
TIGR00895	398	2A0115 benzoate transport.	97.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.88
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.86
PRK09848	448	glucuronide transporter; Provisional	97.86
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.83
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.82
KOG2533	495	consensus Permease of the major facilitator superf	97.81
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.78
PTZ00207	591	hypothetical protein; Provisional	97.76
PRK11043	401	putative transporter; Provisional	97.76
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.71
PRK11010	491	ampG muropeptide transporter; Validated	97.71
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.7
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.7
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.69
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.68
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.66
PRK10642	490	proline/glycine betaine transporter; Provisional	97.64
PRK10133	438	L-fucose transporter; Provisional	97.63
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.54
TIGR00805	633	oat sodium-independent organic anion transporter.	97.53
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.5
PRK11902	402	ampG muropeptide transporter; Reviewed	97.5
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.49
KOG0569	485	consensus Permease of the major facilitator superf	97.46
PF13347	428	MFS_2: MFS/sugar transport protein	97.44
KOG0254	513	consensus Predicted transporter (major facilitator	97.44
PRK09952	438	shikimate transporter; Provisional	97.43
PRK15011	393	sugar efflux transporter B; Provisional	97.42
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.41
KOG2532	466	consensus Permease of the major facilitator superf	97.41
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.4
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.4
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.36
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.36
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.29
KOG2615	451	consensus Permease of the major facilitator superf	97.29
PRK09669	444	putative symporter YagG; Provisional	97.28
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.26
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.23
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.17
TIGR00901	356	2A0125 AmpG-related permease.	97.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.15
KOG2532	466	consensus Permease of the major facilitator superf	97.15
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.06
KOG0569	485	consensus Permease of the major facilitator superf	97.05
COG2211	467	MelB Na+/melibiose symporter and related transport	97.0
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.99
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.94
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.75
PRK11462	460	putative transporter; Provisional	96.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.69
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.57
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.48
PRK15075	434	citrate-proton symporter; Provisional	96.47
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.39
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.21
TIGR00805	633	oat sodium-independent organic anion transporter.	96.16
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.86
KOG2563	480	consensus Permease of the major facilitator superf	95.8
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	95.59
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	95.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.29
KOG2533	495	consensus Permease of the major facilitator superf	95.16
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.95
PRK09669	444	putative symporter YagG; Provisional	94.83
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.75
KOG3626	735	consensus Organic anion transporter [Secondary met	94.52
PF12832	77	MFS_1_like: MFS_1 like family	94.25
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	94.06
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.77
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.31
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	93.1
PF13347	428	MFS_2: MFS/sugar transport protein	92.95
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	92.86
KOG3762	618	consensus Predicted transporter [General function	92.44
PRK10429	473	melibiose:sodium symporter; Provisional	92.35
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	91.78
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	91.53
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	90.81
KOG3764	464	consensus Vesicular amine transporter [Intracellul	90.76
KOG3098	461	consensus Uncharacterized conserved protein [Funct	90.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	90.44
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	89.39
KOG0254	513	consensus Predicted transporter (major facilitator	88.36
PRK09848	448	glucuronide transporter; Provisional	87.75
KOG1330	493	consensus Sugar transporter/spinster transmembrane	87.15
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	86.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	85.56
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	84.79
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	83.54
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	83.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	82.12
PRK11462	460	putative transporter; Provisional	81.38

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=5.4e-23  Score=194.25  Aligned_cols=180  Identities=20%  Similarity=0.291  Sum_probs=152.6

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhh--HHHHHHHHHHhcccccccccc-----------
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRG--ISTFVSLVNIWNCLGRVVSGF-----------  108 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~--aa~~~si~~i~~~vGRl~~G~-----------  108 (234)
                      |+.|.+++.+||++|+.++|+.+.++.+++|+..+.+++ |.+.+.  ...++++++++|.+||+..|.           
T Consensus       345 t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~  424 (591)
T PTZ00207        345 TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE  424 (591)
T ss_pred             hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence            899999999999999999999999999999999999999 883333  334899999999999999998           


Q ss_pred             --cchHHHHHHHHHHHHHHHHHHHhhcc-chhh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------
Q 038282          109 --FRRPLMLTIILLVSWIGHLLIAFNVP-GGLN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------  167 (234)
Q Consensus       109 --~gr~~~l~~~~~~~~i~~~ll~~~~~-~~l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------  167 (234)
                        +.|...+.+..+ +.++.+++....+ ..+|    +.|+++|..+++.+++++|+|| ||++.+              
T Consensus       425 ~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~  502 (591)
T PTZ00207        425 DRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIF  502 (591)
T ss_pred             cccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHH
Confidence              122233445555 6666666666555 5565    9999999999999999999999 999963              


Q ss_pred             ----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhHHhhccc
Q 038282          168 ----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAKSAA  224 (234)
Q Consensus       168 ----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~~~  224 (234)
                                      .++..|.+..||+.+|+ +++++++++++...++.|.||+|++.+.+|+|.++|+.+.
T Consensus       503 ~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~~~~~~~~~~  576 (591)
T PTZ00207        503 LNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEERRRIREEERAL  576 (591)
T ss_pred             HHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHHHHHhhhhcc
Confidence                            23457888899999999 9999999999999999999999999999999999885553

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.57  E-value=2.3e-14  Score=134.05  Aligned_cols=157  Identities=22%  Similarity=0.306  Sum_probs=130.1

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc------cchHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF------FRRPLMLTII  118 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~------~gr~~~l~~~  118 (234)
                      .+.+|++.|+.+.+...+.......+..+++++++++|+++.+++.++|++++.+++||+++|+      +.++.+..++
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~  371 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT  371 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence            5899999999998888887777777888999999999999999999999999999999999999      2334444455


Q ss_pred             HHHHHHHHHHHHhhccch-h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccc
Q 038282          119 LLVSWIGHLLIAFNVPGG-L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGV  176 (234)
Q Consensus       119 ~~~~~i~~~ll~~~~~~~-l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~  176 (234)
                      .+..+++...++...+.. +  +  ++|++.|...++.+.++.|+.|.+++++.                 .+|+++|.+
T Consensus       372 ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  372 LLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence            555656654445444432 2  3  99999999999999999999999999973                 277999999


Q ss_pred             cccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          177 ECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       177 g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ++|+..|+ ++.+.+++..+.+..+.
T Consensus       452 g~Y~~~f~~~g~~~~~s~~~~~~~~~  477 (509)
T KOG2504|consen  452 GNYDHAFYFCGLCFLLSAVLLLILRE  477 (509)
T ss_pred             CCeeeehhhcChHHHHHHHHHHHhHH
Confidence            99999999 88888888877777663

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.31  E-value=2.9e-11  Score=111.54  Aligned_cols=182  Identities=16%  Similarity=0.178  Sum_probs=123.3

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc-cc-----hHHHHHHH-
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-FR-----RPLMLTII-  118 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-~g-----r~~~l~~~-  118 (234)
                      +.+|+|.||...+..++..........+++++.++.|+++.+++.++++.++++.+++++.|+ .+     +++...+. 
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  315 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF  315 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence            688999999887776665555555667888999999999999999999999999999999998 22     22222222 


Q ss_pred             -HHHHHHHHHHHHhhccch-h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccccc
Q 038282          119 -LLVSWIGHLLIAFNVPGG-L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIG  175 (234)
Q Consensus       119 -~~~~~i~~~ll~~~~~~~-l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~  175 (234)
                       .+..++++++.....+.. +  +  ++|+++|...+...+++.|.++.++.++.                 ..|.+.|.
T Consensus       316 ~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  395 (455)
T TIGR00892       316 ALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA  395 (455)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence             222233333332222222 2  2  88999999999999999999998887763                 26777888


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHhhhHHhhccccch
Q 038282          176 VECFKLSFI-MTAATLFSAFVSLILVL-MTRKFYKSDIHQRFREAAAKSAADKG  227 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (234)
                      .++|+..|+ .+++.+++.+....-+. ..|..-+|.++.-.||++||....+|
T Consensus       396 ~g~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (455)
T TIGR00892       396 TKNYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQKAALEREGARDKKDAEG  449 (455)
T ss_pred             cCCcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence            889999999 77777766654433221 23333344444555666555544443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.09  E-value=5.3e-10  Score=98.11  Aligned_cols=151  Identities=25%  Similarity=0.339  Sum_probs=114.8

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .+.++.+|++++|.+.+..++..........+.+++.++.|.++.+++...++.++...++++++|+    ++|++.+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  275 (377)
T TIGR00890       196 YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI  275 (377)
T ss_pred             hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            4567899999999888777665555554556677888889999989999999999999999999999    688888877


Q ss_pred             HHHHHHHHHHHHHhhcc-ch--h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccc
Q 038282          118 ILLVSWIGHLLIAFNVP-GG--L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNC  173 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~-~~--l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~  173 (234)
                      ..++.+++.+++..... ..  .   . +.|++.|...+..+.++.|.++.++.++.                 ..|.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       276 VFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777665554322 11  1   1 77888999889999999999999988863                 134444


Q ss_pred             ccccccHHHHH-HHHHHHHHH
Q 038282          174 IGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       174 d~~g~Y~~~f~-~a~~~~va~  193 (234)
                      |. .+|+..|+ .+++.+++.
T Consensus       356 ~~-~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       356 TE-IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hh-hchhhHHHHHHHHHHHhc
Confidence            43 35888888 777666654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.08  E-value=7.5e-10  Score=100.04  Aligned_cols=158  Identities=12%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      ..+.+|++++|.+.+.+++.......+..+++++.+++|.+..+++...++.++++.+|++++|+    ++|++.+....
T Consensus       198 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~  277 (393)
T PRK09705        198 PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLAL  277 (393)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            35678899999877766665555555677899999989999999999999999999999999999    68887777777


Q ss_pred             HHHHHHHHHHHh-hccc-hh-h-hHhhhhhchhhhhHHHHHHhhCC-CCCCCC-----------------CCcccccccc
Q 038282          120 LVSWIGHLLIAF-NVPG-GL-N-IMGFNFGAQWPLVFAITSEFFGP-KNHKEP-----------------EDDLNCIGVE  177 (234)
Q Consensus       120 ~~~~i~~~ll~~-~~~~-~l-~-l~G~~~G~~~~~~p~l~~~~fG~-~~~~~~-----------------g~g~~~d~~g  177 (234)
                      .+.+++.+++.. +... .+ . +.|++.|...+.....+.+.++. ++.++.                 ..|++.|..|
T Consensus       278 ~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g  357 (393)
T PRK09705        278 VLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG  357 (393)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            676666655432 2211 12 2 77888888888777777777764 444431                 2667888899


Q ss_pred             ccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          178 CFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       178 ~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      +|+..|+ .+++++++..+.+.++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        358 NYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999 78777777666555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.03  E-value=5.2e-09  Score=96.26  Aligned_cols=165  Identities=10%  Similarity=0.031  Sum_probs=108.7

Q ss_pred             HhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----c--chHHHH-HHH
Q 038282           47 ALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----F--RRPLML-TII  118 (234)
Q Consensus        47 ~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~--gr~~~l-~~~  118 (234)
                      .+|++.+|.+++..++..........++|.+.++ .|++..+++...++.++++.+|+++.|+    +  +|+... ...
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            6789999998887777665555566789999887 5999888888889999999999999999    3  343322 222


Q ss_pred             HHHHHHHHHHHHhhc-cc-h-h-h---hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C--------Ccccc
Q 038282          119 LLVSWIGHLLIAFNV-PG-G-L-N---IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E--------DDLNC  173 (234)
Q Consensus       119 ~~~~~i~~~ll~~~~-~~-~-l-~---l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g--------~g~~~  173 (234)
                      ..+..++.+++.... .. . . .   ++|.+..+........+.|.++++..++.          +        .|.+.
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            233333333332211 11 1 1 1   33443333333344567799998888863          1        33445


Q ss_pred             ccccccHHHHH-HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 038282          174 IGVECFKLSFI-MTAATLFSAFVSLILVLMTRKFYKSDIH  212 (234)
Q Consensus       174 d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~~~~~~~~~  212 (234)
                      |..| |+..|+ +++++++++++...+...++|..+|.+.
T Consensus       409 ~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (452)
T PRK11273        409 DFFG-WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQ  447 (452)
T ss_pred             HHhc-chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHh
Confidence            5555 999999 8888888888887776666666666654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.97  E-value=2.5e-09  Score=99.24  Aligned_cols=158  Identities=11%  Similarity=0.070  Sum_probs=97.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchH------
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRP------  112 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~------  112 (234)
                      +++.++++++|.+++.+++.......+...++++..+ .|++...++.+.++.++++.+||+++|+    ++||      
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r  324 (476)
T PLN00028        245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR  324 (476)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence            4677899999998887665555554455567777655 5999999999999999999999999999    4433      


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhccch--h-h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C---Ccccc
Q 038282          113 -LMLTIILLVSWIGHLLIAFNVPGG--L-N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E---DDLNC  173 (234)
Q Consensus       113 -~~l~~~~~~~~i~~~ll~~~~~~~--l-~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~g~~~  173 (234)
                       ....+.+++.+++++++....+..  . .  +++++.+...+...+++.++ ++++.+..          |   .++++
T Consensus       325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~  403 (476)
T PLN00028        325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLF  403 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHHH
Confidence             233333333333333332222211  1 1  44444333322222223332 34555542          1   33444


Q ss_pred             c--cccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          174 I--GVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       174 d--~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      +  .+++|+..|+ ++++.+++.++.++++.+
T Consensus       404 ~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~  435 (476)
T PLN00028        404 FTGSSYSTETGISLMGVMIIACTLPVAFIHFP  435 (476)
T ss_pred             HhcCCccHhhHHHHHHHHHHHHHHHHHheecc
Confidence            4  3567999999 888888888888777643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.93  E-value=5.4e-09  Score=94.00  Aligned_cols=148  Identities=13%  Similarity=0.086  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      +.+.+++..++.......+..+.+.+.++.|.++.+.+...+..+++..+++++.|+    ++|++.+...++..+++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        221 ATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            344444444444444444556788888999999999999999999999999999999    6778877766655555555


Q ss_pred             HHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-
Q 038282          128 LIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-  184 (234)
Q Consensus       128 ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-  184 (234)
                      ++....... ++    +.|++.++..+..++++.|.++.++.++.                 ..|.+.|..++|...++ 
T Consensus       301 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~  380 (406)
T PRK11551        301 ALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGA  380 (406)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHH
Confidence            444322221 21    67888888888889999999999888763                 26677777788888888 


Q ss_pred             HHHHHHHHHHHHHHH
Q 038282          185 MTAATLFSAFVSLIL  199 (234)
Q Consensus       185 ~a~~~~va~~l~l~l  199 (234)
                      ...+.+++.++.+.+
T Consensus       381 ~~~~~~~~~~~~~~~  395 (406)
T PRK11551        381 SIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777766665544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.92  E-value=1.4e-08  Score=93.68  Aligned_cols=155  Identities=14%  Similarity=0.057  Sum_probs=104.5

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      +.+|+|.+|.+++..++..........++|.+.++ .|+|..+++...++..++..+|++++|+    ++||+.+.....
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~  332 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA  332 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            37899999998888777665555566788888865 7999999999999999999999999999    676666554433


Q ss_pred             HHHHHHHHHHhh--ccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------C-------Ccccccc
Q 038282          121 VSWIGHLLIAFN--VPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------E-------DDLNCIG  175 (234)
Q Consensus       121 ~~~i~~~ll~~~--~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------g-------~g~~~d~  175 (234)
                      +..++..++...  .+.. .+    ++|++..+........+.|.++.++.++.           |       .|++.|.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~  412 (467)
T PRK09556        333 LALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADP  412 (467)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcc
Confidence            333332222221  1221 22    45543333333334566789988887752           1       3555661


Q ss_pred             -----------ccccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          176 -----------VECFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       176 -----------~g~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                                 ..+|+..|+ ..++++++.++.+.++
T Consensus       413 ~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        413 TKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             cccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence                       245999999 8888888887777665

>TIGR00889 2A0110 nucleoside transporter

Probab=98.92  E-value=2.4e-09  Score=97.78  Aligned_cols=161  Identities=11%  Similarity=0.031  Sum_probs=120.1

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCCh--------hhHHHHHHHHHHhcccccccccc----cc
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPK--------RGISTFVSLVNIWNCLGRVVSGF----FR  110 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~--------~~aa~~~si~~i~~~vGRl~~G~----~g  110 (234)
                      +..+.+|+|+||.+++..++..........+.+.+.++.|.++        ...+..+++.++..+++++..|+    +|
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g  279 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG  279 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4567899999998877777655444344567777888877654        45689999999999999999998    79


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcc-c---h-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------
Q 038282          111 RPLMLTIILLVSWIGHLLIAFNVP-G---G-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------  167 (234)
Q Consensus       111 r~~~l~~~~~~~~i~~~ll~~~~~-~---~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------  167 (234)
                      +|+++....++.++++.++....+ .   . ++    +.|++.+...+..+.++.|.++.+..++.              
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~  359 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL  359 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH
Confidence            999998888888777655554221 1   1 12    78888888888888999999998877753              


Q ss_pred             ----CCcccccccc-----ccHHHHH-HHHHHHHHHHHHHHHHhhh
Q 038282          168 ----EDDLNCIGVE-----CFKLSFI-MTAATLFSAFVSLILVLMT  203 (234)
Q Consensus       168 ----g~g~~~d~~g-----~Y~~~f~-~a~~~~va~~l~l~l~~~~  203 (234)
                          .+|.+.|..|     +|+.+|+ .+++.++++++.+...+++
T Consensus       360 iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       360 LGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                2666777664     5999999 8888888777776665433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.83  E-value=4.6e-08  Score=87.89  Aligned_cols=151  Identities=9%  Similarity=-0.092  Sum_probs=115.7

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .+..+.+|+|++|.+.+..++..........+.+++.++.|.++.+.+.++++..+...++.+++|+    +|.++.+.+
T Consensus       196 ~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       196 SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            3567899999999988877776555555667888899999999999999999999999999999998    688888888


Q ss_pred             HHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccccc
Q 038282          118 ILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLNCI  174 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~~d  174 (234)
                      +.+..++.+.++....+.. ++    +.|+++|...+....++.+. ..++.++.                  .+|+++|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       276 SAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877666543323 22    88999999999988888887 55454421                  2777888


Q ss_pred             cccccHHHHH-HHHHHHHHHHH
Q 038282          175 GVECFKLSFI-MTAATLFSAFV  195 (234)
Q Consensus       175 ~~g~Y~~~f~-~a~~~~va~~l  195 (234)
                      ..| + ..|. ++++++++.++
T Consensus       355 ~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       355 TLG-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             hcc-H-HHHHHHHHHHHHHHHH
Confidence            775 4 5676 77777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.82  E-value=3.1e-08  Score=88.24  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=121.5

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLT  116 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~  116 (234)
                      .+..++.|||.-|.+.+.+.+-+...+.++..+|++..|+|+|+.+++.++|+..+.+....+..-+     -++++...
T Consensus       199 ~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~  278 (395)
T COG2807         199 VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVV  278 (395)
T ss_pred             ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            3456799999999999888888888888899999999999999999999999999999888887777     46677777


Q ss_pred             HHHHHHHHHHHHHHh-hccchh-h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC---------------C---Cccccc
Q 038282          117 IILLVSWIGHLLIAF-NVPGGL-N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP---------------E---DDLNCI  174 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~-~~~~~l-~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~---------------g---~g~~~d  174 (234)
                      ...+++.++..-+.+ +.+..+ .  ++|++.|+.+++.-.++.+....-+....               |   .|.++|
T Consensus       279 ~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD  358 (395)
T COG2807         279 LALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD  358 (395)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence            777777777666654 333322 2  99999999999999888766654444310               2   788999


Q ss_pred             cccccHHHHH-HHHHHHHHHHHHH
Q 038282          175 GVECFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       175 ~~g~Y~~~f~-~a~~~~va~~l~l  197 (234)
                      .+|||..+++ .+...++..++-+
T Consensus       359 a~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         359 ATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999 6666555554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=5.1e-08  Score=88.33  Aligned_cols=147  Identities=16%  Similarity=0.267  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      .-+.+.++.|+.....+.+..-++++++|.|+|..+++.++|+++++-.++-++...    ++||+.+...+.+++++.+
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~   93 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL   93 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence            344556666776777877888999999999999999999999999999999998887    8999999999999999998


Q ss_pred             HHHhhccchh--h---hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-
Q 038282          128 LIAFNVPGGL--N---IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-  184 (234)
Q Consensus       128 ll~~~~~~~l--~---l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-  184 (234)
                      +...+.+..+  .   +.|++.|..+++..++.+++-.+++.++.              |   +.++ -..-+|+.+|. 
T Consensus        94 l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i-g~~~GWR~~F~~  172 (394)
T COG2814          94 LSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL-GQLFGWRATFLA  172 (394)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH-HHHhhHHHHHHH
Confidence            8887655443  2   99999999999999999999999999983              2   1121 22357999999 


Q ss_pred             HHHHHHHHHHHHHHH
Q 038282          185 MTAATLFSAFVSLIL  199 (234)
Q Consensus       185 ~a~~~~va~~l~l~l  199 (234)
                      .+++.+++.+..+..
T Consensus       173 ia~l~ll~~~~~~~~  187 (394)
T COG2814         173 IAVLALLALLLLWKL  187 (394)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888887776554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.80  E-value=4.2e-08  Score=88.67  Aligned_cols=162  Identities=12%  Similarity=0.094  Sum_probs=121.9

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHHhcccccccccc----cchHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      ...+.+.++++-|.+.+.++.+-+....+...++.+.+++ |.++..++...+...+.+.+.|++.||    +|.++++.
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~  288 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL  288 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence            3466788899999999988877666666777888888875 999999999999999999999999999    77778788


Q ss_pred             HHHHHHHHHHHHHHhhc------cchh---------h-hHhhhhhchhhhhHHHHHHhhCCCCC-----CCC-------C
Q 038282          117 IILLVSWIGHLLIAFNV------PGGL---------N-IMGFNFGAQWPLVFAITSEFFGPKNH-----KEP-------E  168 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~~~------~~~l---------~-l~G~~~G~~~~~~p~l~~~~fG~~~~-----~~~-------g  168 (234)
                      ..+..++++..++....      ....         + +.|++.|+++-++|.+-.+-.|.-.-     +.+       .
T Consensus       289 ~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~  368 (417)
T COG2223         289 AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLA  368 (417)
T ss_pred             HHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHH
Confidence            77777777766665432      1111         1 78999999999999887662221100     001       1


Q ss_pred             CccccccccccHHHHH-HHHHHHHHHHHHHHHHhhh
Q 038282          169 DDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLMT  203 (234)
Q Consensus       169 ~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~  203 (234)
                      -+..+|.+|+|+..|+ ...+.+++..+...+..|+
T Consensus       369 ~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         369 FGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456789999999999 9999888888877765544

>PRK03699 putative transporter; Provisional

Probab=98.78  E-value=7.5e-08  Score=86.77  Aligned_cols=156  Identities=13%  Similarity=0.139  Sum_probs=107.6

Q ss_pred             ccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHH
Q 038282           49 FSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSW  123 (234)
Q Consensus        49 k~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~  123 (234)
                      .++.+|.+.+..++.......+....+.+.++ .|+|..+++.+.++..++..+||+++|+    ++|++.+.....+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~  282 (394)
T PRK03699        203 WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLAL  282 (394)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence            35678887777777665555566788999865 5999999999999999999999999999    688887776666655


Q ss_pred             HHHHHHHhhccch-h-h---hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHH
Q 038282          124 IGHLLIAFNVPGG-L-N---IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKL  181 (234)
Q Consensus       124 i~~~ll~~~~~~~-l-~---l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~  181 (234)
                      ++++++....+.. + .   +.|++.++.++...+...+... ++.++.                 ..|++.|..| |..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~  360 (394)
T PRK03699        283 VLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQA  360 (394)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chh
Confidence            5554444332222 2 1   7788888888887777776553 333321                 1456666544 778


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhhhhhh
Q 038282          182 SFI-MTAATLFSAFVSLILVLMTRKF  206 (234)
Q Consensus       182 ~f~-~a~~~~va~~l~l~l~~~~~~~  206 (234)
                      +++ .+++.+++.++.+.+.+.+||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (394)
T PRK03699        361 ALLTANGLYAVVFVMCILLGFVSKHR  386 (394)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            888 7777777776666665444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.78  E-value=5.4e-08  Score=87.38  Aligned_cols=145  Identities=13%  Similarity=0.169  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGH  126 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~  126 (234)
                      +.+|.+.+..++...........++.+.++.|.|..+.+.+.+...++..++.+++|+    +|||+.+....++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            4567767666666655556667888999999999999999999999999999999998    899999999888888887


Q ss_pred             HHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH
Q 038282          127 LLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI  184 (234)
Q Consensus       127 ~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~  184 (234)
                      ++.....+.. ++    +.|++.|...+..+.++.++++.++.++.              +   ++...+ ..+|+.+|+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~gwr~~f~  161 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ-EFSWRYTFL  161 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh-hccHHHHHH
Confidence            7666544332 22    88999999888889999999988776642              1   222222 346999998


Q ss_pred             -HHHHHHHHHHHH
Q 038282          185 -MTAATLFSAFVS  196 (234)
Q Consensus       185 -~a~~~~va~~l~  196 (234)
                       .+...++..+..
T Consensus       162 ~~~~~~~~~~~~~  174 (382)
T PRK10091        162 LIAVFNIAVLASI  174 (382)
T ss_pred             HHHHHHHHHHHHH
Confidence             776666555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.74  E-value=1.5e-07  Score=84.41  Aligned_cols=156  Identities=13%  Similarity=0.104  Sum_probs=102.7

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      .+.+|++++|.+++..++..........+.+++.++ .|.++.+.+.+.++.+++..+++++.|+    +++++.+....
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~  272 (382)
T PRK10091        193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTD  272 (382)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHH
Confidence            467899999987766555433333334556666654 6999999999999999999999999999    67788887777


Q ss_pred             HHHHHHHHHHHh-hccchh--h---hHhhhhhchhh-hhHHHHHHhhCCCCCCCC---------------CCcccccccc
Q 038282          120 LVSWIGHLLIAF-NVPGGL--N---IMGFNFGAQWP-LVFAITSEFFGPKNHKEP---------------EDDLNCIGVE  177 (234)
Q Consensus       120 ~~~~i~~~ll~~-~~~~~l--~---l~G~~~G~~~~-~~p~l~~~~fG~~~~~~~---------------g~g~~~d~~g  177 (234)
                      .+.+++.+++.. ......  .   +.+++.++..+ .....+.+.++.+..+..               ..|.+.|.++
T Consensus       273 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~  352 (382)
T PRK10091        273 FIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGL  352 (382)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHccc
Confidence            777776654433 222221  1   44444443332 222344455555544431               2778888889


Q ss_pred             ccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          178 CFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       178 ~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                      +|+..+. .+..++++..+.....
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        353 AYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 7766666666555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.73  E-value=1.2e-07  Score=92.77  Aligned_cols=119  Identities=21%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             hccHHHHHHHHHHHHhhhh-HH--h-HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           48 LFSMDMLILFLATICGVGG-TL--L-AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        48 lk~~~F~~l~~~~~~~~~~-~~--~-~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      -..+..|.+++...+..+. ++  . +...++.+..+.|++..+.+++.++..++..+|.+++|+    +|||+++.+.+
T Consensus       160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l  239 (742)
T TIGR01299       160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL  239 (742)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3457777766555444322 21  1 233466667788999999999999999999999999999    89999999888


Q ss_pred             HHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          120 LVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       120 ~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ++.+++.++..+..+.. ++    +.|++.|+..++.+++++|+++.++.+.
T Consensus       240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~  291 (742)
T TIGR01299       240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGE  291 (742)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            88777766655543322 21    8899999999999999999999988775

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.72  E-value=1.6e-07  Score=82.39  Aligned_cols=157  Identities=16%  Similarity=0.064  Sum_probs=106.8

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHH--H
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPL--M  114 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~--~  114 (234)
                      .+.++.+|+|++|.+++..++.......+..+.+.+.++ .|.++.+.+...++.++++.++++++|+    ++||+  .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  285 (399)
T TIGR00893       206 YQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL  285 (399)
T ss_pred             cchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            346789999999998888777766666666778888765 6999999999999999999999999999    56664  1


Q ss_pred             HHHH--HHHHH--HHHHHHHhhcc-ch-h-h---hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------
Q 038282          115 LTII--LLVSW--IGHLLIAFNVP-GG-L-N---IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------  167 (234)
Q Consensus       115 l~~~--~~~~~--i~~~ll~~~~~-~~-l-~---l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------  167 (234)
                      ....  ..+..  .+......... .. . .   +.+....+..+...+++.|.++.++.++.                 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~  365 (399)
T TIGR00893       286 VFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI  365 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence            1111  11111  11111111111 11 1 1   33333333678888899999999888752                 


Q ss_pred             CCccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          168 EDDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       168 g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      ..|.+.|..|+|...|+ .+++.+++.++.+.
T Consensus       366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       366 VIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            26677788888999999 88888777766543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.71  E-value=3.2e-07  Score=83.20  Aligned_cols=196  Identities=17%  Similarity=0.102  Sum_probs=130.8

Q ss_pred             ccccCCCccccccccccCCccccCC----CCCCC-----CC-CCCCHH-----HHhccHHHHHHHHHHHHhhhhHHhHHh
Q 038282            8 NLFLGKPKSIHLMRYRSIDSKYLSG----WCQLY-----QG-EDYTIL-----QALFSMDMLILFLATICGVGGTLLAID   72 (234)
Q Consensus         8 ~l~~~~p~~~~~~~~~p~~~~~~~~----~~~~~-----~~-~~~~~~-----~~lk~~~F~~l~~~~~~~~~~~~~~~~   72 (234)
                      .+++++.. ++++|++|++.+.++-    +++++     ++ ++++.+     -++|||--|.+.++.++.-..=+.+..
T Consensus       195 aiival~~-~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~d  273 (448)
T COG2271         195 AIIVALIL-LFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGIND  273 (448)
T ss_pred             HHHHHHHH-HHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444 4678999998886542    12221     11 225543     478999999999888877777667777


Q ss_pred             hHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-----c-chHHHHHHHHHH-HHHHHHHHHhhccc--hh----h
Q 038282           73 NLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-----F-RRPLMLTIILLV-SWIGHLLIAFNVPG--GL----N  138 (234)
Q Consensus        73 ~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~-gr~~~l~~~~~~-~~i~~~ll~~~~~~--~l----~  138 (234)
                      ..|.+..+ .|+|...+....+++=++...|.+++||     + |||..+.+.+.+ ..+++..++.+...  .+    .
T Consensus       274 W~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l  353 (448)
T COG2271         274 WGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILL  353 (448)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence            88888766 6999999999999999999999999999     4 777766654444 34455555543322  22    1


Q ss_pred             -hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          139 -IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       139 -l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                       ++|+..-+-.-++-....|.-..+-.|+.                  ..+++-|. -+|+..|+ ..+.++++.++.+.
T Consensus       354 ~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         354 FIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             HHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-CCCcchHHHHHHHHHHHHHHHHH
Confidence             56665555455555566666666666653                  13444444 67889999 88888888877766


Q ss_pred             HHhhhhh
Q 038282          199 LVLMTRK  205 (234)
Q Consensus       199 l~~~~~~  205 (234)
                      +...+++
T Consensus       433 ~~~~~~~  439 (448)
T COG2271         433 VWNAEER  439 (448)
T ss_pred             HHhhcch
Confidence            6544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.70  E-value=7.7e-08  Score=87.37  Aligned_cols=155  Identities=12%  Similarity=-0.005  Sum_probs=103.3

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh----hCCChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS----LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML  115 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~----~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l  115 (234)
                      ..+.+|+|.+|.+.+..++..........+.+.+..+    .+.+..+.+.+.++..+.+.++.+++|+    +|+++.+
T Consensus       216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  295 (420)
T PRK09528        216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL  295 (420)
T ss_pred             HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            4568899999876654444333322233345555443    3677777889999999999999999999    7888888


Q ss_pred             HHHHHHHHHHHHHHHhhccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccc
Q 038282          116 TIILLVSWIGHLLIAFNVPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLN  172 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~  172 (234)
                      ....++.+++.+++....+... +    +.|++.+........++.+.++.+..++.                  ..|++
T Consensus       296 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l  375 (420)
T PRK09528        296 LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL  375 (420)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666654333222 2    66666666666666777888888776542                  15566


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      .|.. +|+.+|+ .+++.++..++.+..
T Consensus       376 ~~~~-G~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        376 YDSI-GFQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             HHhh-CchHHHHHHHHHHHHHHHHHHHH
Confidence            6654 4999999 787777666555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.70  E-value=6.2e-08  Score=88.64  Aligned_cols=126  Identities=13%  Similarity=0.207  Sum_probs=96.5

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      +...++.+.++.|+|..+.+.+.+...++..++++++|+    +|||+++.+..++.+++.++.....+.. ++    +.
T Consensus        42 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  121 (434)
T PRK11663         42 FNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLN  121 (434)
T ss_pred             HHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345678888999999999999999999999999999999    7999999888888887776665543322 21    67


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVS  196 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~  196 (234)
                      |++.|..++....++.+.|..++.++.                 ..+.+.+ ..+|+..|+ .+.+.++.+++.
T Consensus       122 g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gw~~~f~~~~i~~~~~~~~~  194 (434)
T PRK11663        122 AFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL-HYGWRYGMMIAGIIAIVVGLFL  194 (434)
T ss_pred             HHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHH
Confidence            888998888899999999998887763                 1333333 346999998 766655554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.69  E-value=3.9e-07  Score=83.42  Aligned_cols=151  Identities=15%  Similarity=0.021  Sum_probs=94.8

Q ss_pred             HhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----c--c-hHHHHHHH
Q 038282           47 ALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----F--R-RPLMLTII  118 (234)
Q Consensus        47 ~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~--g-r~~~l~~~  118 (234)
                      .+|++.+|.+.+..++.......+..+++++.+ +.|++..+++...+++.+++.+|++++|+    +  + |+......
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            677899998877666555444445567888885 47999999999999999999999999999    3  2 12222221


Q ss_pred             HHHHHHHHHH-HHhhccch--hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccc
Q 038282          119 LLVSWIGHLL-IAFNVPGG--LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCI  174 (234)
Q Consensus       119 ~~~~~i~~~l-l~~~~~~~--l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d  174 (234)
                      .+...++... +..+....  .+    ..|++..+........++|.++.++.+..                 ..|++.|
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~  398 (434)
T PRK11663        319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE  398 (434)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            1111111111 11122111  11    33332222333455677899998888762                 2556677


Q ss_pred             cccccHHHHH-HHHHHHHHHHHHHH
Q 038282          175 GVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       175 ~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      ..| |+..|+ .++++++++++.+.
T Consensus       399 ~~g-~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        399 IWH-WTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             hcc-cHHHHHHHHHHHHHHHHHHHH
Confidence            665 999999 88887777665543

>PRK10504 putative transporter; Provisional

Probab=98.67  E-value=1.2e-07  Score=87.14  Aligned_cols=148  Identities=13%  Similarity=0.099  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGH  126 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~  126 (234)
                      +.+|.+++..++.......+...++.+.++.|.++.+.+++.+...++..++.+++|+    +|||+.+....++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            3678888777776655555667889999999999999999999999999999999998    899998887777777666


Q ss_pred             HHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH
Q 038282          127 LLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI  184 (234)
Q Consensus       127 ~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~  184 (234)
                      ++.....+.. ++    +.|++.|...+...+++.|.+..++.++.              +   ++.+.+. .+|+..|+
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~~f~  168 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHWIFL  168 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHHHHH
Confidence            5544433222 22    88999999999999999999998876642              1   3333333 46999999


Q ss_pred             -HHHHHHHHHHHHHHH
Q 038282          185 -MTAATLFSAFVSLIL  199 (234)
Q Consensus       185 -~a~~~~va~~l~l~l  199 (234)
                       ...++.++.++....
T Consensus       169 ~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        169 INIPVGIIGAIATLML  184 (471)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence             777777776665544

>PRK03545 putative arabinose transporter; Provisional

Probab=98.66  E-value=3e-07  Score=82.60  Aligned_cols=127  Identities=11%  Similarity=0.151  Sum_probs=97.2

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHh
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMG  141 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G  141 (234)
                      ...++++.++.|.|+.+.+...+...++..++.+.+|+    +|||+.+....++.+++.++.....+.. ++    +.|
T Consensus        29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G  108 (390)
T PRK03545         29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA  108 (390)
T ss_pred             HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34578889999999999999999999999999999998    8999999998888888776665544332 22    778


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      ++.+..++...+++.|.+..++.++.              +   .+.+. ...+|+.+|+ .+.++++..++...
T Consensus       109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~-~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG-QYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888889999999998888763              1   22221 2347999998 77777666555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.65  E-value=4.3e-08  Score=86.05  Aligned_cols=128  Identities=16%  Similarity=0.240  Sum_probs=96.8

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchh-h----hHhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGL-N----IMGF  142 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l-~----l~G~  142 (234)
                      ...+.+.++.|.|+.+.+.+.++..++..++.+++|+    +|||+++....++.+++.++.....+... +    +.|+
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   95 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGI   95 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3456667778999999999999999999999999999    79999999888888887777665444322 1    8899


Q ss_pred             hhhchhhhhHHHHHHhhCCCCCCCC----------C---Cc----cccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          143 NFGAQWPLVFAITSEFFGPKNHKEP----------E---DD----LNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       143 ~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~g----~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      +.|...+...+++.|.+..++.++.          |   +.    .......+|+..|+ .+.+.++..++.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881        96 FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence            9999999999999999998887753          1   11    11223457888888 776666655555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.64  E-value=2.3e-07  Score=84.03  Aligned_cols=124  Identities=13%  Similarity=0.228  Sum_probs=97.3

Q ss_pred             hHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----h
Q 038282           69 LAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----I  139 (234)
Q Consensus        69 ~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l  139 (234)
                      .+...++++.++.|.++.+.+..+++..++..++++++|+    +|||+++....++.+++.++.....+.. ++    +
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  117 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC  117 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            3455788899999999999999999999999999999998    8999999999998888776665543332 22    8


Q ss_pred             HhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHH
Q 038282          140 MGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       140 ~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~  193 (234)
                      .|++.|...+..++++.|++..|+.++.              +   ++.+.+ .-+|+..|+ .+.++++..
T Consensus       118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~-~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE-LIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998887753              1   333332 246899998 665555443

>TIGR00896 CynX cyanate transporter

Probab=98.63  E-value=9.3e-08  Score=84.65  Aligned_cols=119  Identities=13%  Similarity=0.095  Sum_probs=87.9

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----c-chHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----F-RRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~-gr~~~l~~  117 (234)
                      +.++.+|+|.+|.+.+..++.......+..+++.+.++.|.+..+++.+.++.+++..++++++|+    + +|++.+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~  268 (355)
T TIGR00896       189 TPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAV  268 (355)
T ss_pred             CCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Confidence            456789999999877666555555555667888898889999999999999999999999999999    4 45666666


Q ss_pred             HHHHHHHHHHHHHhhcc-ch-hh--hHhhhhhchhhhhHHHHHHhhCC
Q 038282          118 ILLVSWIGHLLIAFNVP-GG-LN--IMGFNFGAQWPLVFAITSEFFGP  161 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~-~~-l~--l~G~~~G~~~~~~p~l~~~~fG~  161 (234)
                      ..++.+++.+++..... .. .+  ++|++.|..++...+.+.+....
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~  316 (355)
T TIGR00896       269 LAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQ  316 (355)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccC
Confidence            66666666555544222 12 23  88999999998877776655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.63  E-value=1.7e-07  Score=85.27  Aligned_cols=127  Identities=10%  Similarity=0.086  Sum_probs=97.0

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMGF  142 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G~  142 (234)
                      ...+.+.+|.|.++.+.+.+.++..++..++.+..|+    +|||+.+....++.+++.++.....+.. ++    +.|+
T Consensus        29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  108 (412)
T TIGR02332        29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGI  108 (412)
T ss_pred             HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3455667889999999999999999999999999998    8999999888888887777666544432 32    8899


Q ss_pred             hhhchhhhhHHHHHHhhCCCCCCCC--------------C---Cccccc-----cccccHHHHH-HHHHHHHHHHHHHH
Q 038282          143 NFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCI-----GVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       143 ~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d-----~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      +.|+..+....++.|.|..++.++.              +   ++++.+     ...+|+.+|+ .+...++.+++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       109 AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence            9999998888899999998887763              1   222222     1348999999 77776665554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.61  E-value=5e-07  Score=84.09  Aligned_cols=147  Identities=9%  Similarity=0.092  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHh---hCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTS---LGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTIILLVS  122 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~---~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~~~~~~  122 (234)
                      +.+|.+++..++.....+.+...++.+.++   .|+++.+++.+++...+...++++++|+     +|||+++....++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            346777777777666766677888888775   6999999999999999999999999998     59999999999998


Q ss_pred             HHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCC---CCCC--------------C---Ccccccccc
Q 038282          123 WIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKN---HKEP--------------E---DDLNCIGVE  177 (234)
Q Consensus       123 ~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~---~~~~--------------g---~g~~~d~~g  177 (234)
                      +++.+++....+.. ++    +.|++.|...+..++++++.|..++   .++.              |   .+++.+. -
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~  168 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-Y  168 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            88887776643322 22    7899999999999999999998754   2221              1   3344333 3


Q ss_pred             ccHHHHH-HHHHHHHHHHHHHH
Q 038282          178 CFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       178 ~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      +|+..|+ .+...+++.+..+.
T Consensus       169 g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       169 GYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH
Confidence            5999999 77666665544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03699 putative transporter; Provisional

Probab=98.61  E-value=2.6e-07  Score=83.32  Aligned_cols=146  Identities=9%  Similarity=0.052  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      -+|..++.+++.......+-..++++.++.|+|+.+.+...+...++..++.+++|+    +|||+++....++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   87 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA   87 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            355555555544443333445688899999999999999999999999999999999    7999998888888777776


Q ss_pred             HHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-
Q 038282          128 LIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-  184 (234)
Q Consensus       128 ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-  184 (234)
                      +.....+.. ++    +.|++.|...+...+++.+.+..++.+..          +       .+...+...+|+..|+ 
T Consensus        88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~  167 (394)
T PRK03699         88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC  167 (394)
T ss_pred             HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            666543322 21    78999998888889999999987766542          1       2233344568999998 


Q ss_pred             HHHHHHHHHHHHH
Q 038282          185 MTAATLFSAFVSL  197 (234)
Q Consensus       185 ~a~~~~va~~l~l  197 (234)
                      .+.+.++..++.+
T Consensus       168 ~~~~~~~~~~~~~  180 (394)
T PRK03699        168 IGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.61  E-value=6.5e-07  Score=79.64  Aligned_cols=97  Identities=15%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      .....+.+.++.|.|+.+.+.+.++..++..++.+++|+    +|||+.+....++.+++.++.....+.. ++    +.
T Consensus        31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  110 (405)
T TIGR00891        31 VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVI  110 (405)
T ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344567778889999999999999999999999999999    8999998888887777776665543322 22    88


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      |++.|...+...+++.|.+..++.++
T Consensus       111 G~~~~~~~~~~~~~i~~~~~~~~~~~  136 (405)
T TIGR00891       111 GIGMGGEYGSSAAYVIESWPKHLRNK  136 (405)
T ss_pred             HhhhhhhhHHHHHHHHHhCChhhhhH
Confidence            99999999999999999999888776

>PRK10054 putative transporter; Provisional

Probab=98.58  E-value=3.2e-07  Score=83.06  Aligned_cols=146  Identities=10%  Similarity=0.065  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIG  125 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~  125 (234)
                      +++|.+.+..++...........++.+.+ +.|+|+.+.+.+.++..+...+++++.|+    +|||+++.+..++.+++
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~   86 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG   86 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence            45788777777766555556667777765 57999999999999999999999999999    79999888888777777


Q ss_pred             HHHHHhhccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHH
Q 038282          126 HLLIAFNVPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSF  183 (234)
Q Consensus       126 ~~ll~~~~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f  183 (234)
                      .+++.+..+... +    +.|.+.+...+...+...|.++.++.++.              +   ++.+.+  .+|+.+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f  164 (395)
T PRK10054         87 FIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPF  164 (395)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHH
Confidence            666655333222 1    55666666677788888899888776652              1   334332  4688999


Q ss_pred             H-HHHHHHHHHHHHHH
Q 038282          184 I-MTAATLFSAFVSLI  198 (234)
Q Consensus       184 ~-~a~~~~va~~l~l~  198 (234)
                      + .+.+.+++.++...
T Consensus       165 ~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        165 WLAAICSAFPLVFIQI  180 (395)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9 77777776555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.58  E-value=7.2e-07  Score=80.07  Aligned_cols=149  Identities=11%  Similarity=-0.074  Sum_probs=101.7

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .+.++.+|+|.+|.+.+..++..........+.+.+.++.|.++.+.+.+.++..+...+++++.|+    +++++.+..
T Consensus       196 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~  275 (382)
T PRK11128        196 PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLL  275 (382)
T ss_pred             chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4678999999999877766665544444556778888889999999999999999999999999998    677888887


Q ss_pred             HHHHHHHHHHHHHhhccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccccc
Q 038282          118 ILLVSWIGHLLIAFNVPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLNCI  174 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~~d  174 (234)
                      ..+..+++.+++....+... +    +.|+++|...+....++.+.- .++.++.                  .+|.++|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        276 SAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777665544333222 2    667777766665555555543 2222321                  1566777


Q ss_pred             cccccHHHHH-HHHHHHHHH
Q 038282          175 GVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       175 ~~g~Y~~~f~-~a~~~~va~  193 (234)
                      ..|.  ..|+ .+++.+++.
T Consensus       355 ~~g~--~~~~~~~~~~~~~~  372 (382)
T PRK11128        355 HLGA--GVFWVMALVALPAL  372 (382)
T ss_pred             hccH--HHHHHHHHHHHHHH
Confidence            6654  3566 665555443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.58  E-value=4.1e-07  Score=80.57  Aligned_cols=148  Identities=12%  Similarity=0.101  Sum_probs=106.5

Q ss_pred             cHHHHHHHHHHHHhhhhH-HhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHH
Q 038282           50 SMDMLILFLATICGVGGT-LLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWI  124 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~-~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i  124 (234)
                      +++++.....+.+....+ .......+.+.++.|.|+.+.+.+.++..++..++.+++|+    +|||+.+....++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   82 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFAL   82 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            444554444443333233 33445678888899999999999999999999999999998    8999999888888777


Q ss_pred             HHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHH
Q 038282          125 GHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLS  182 (234)
Q Consensus       125 ~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~  182 (234)
                      +.++.....+.. ++    +.|++.+...+...+++.|.+..++.++.              +   .+.+.+ ..+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~  161 (385)
T TIGR00710        83 SSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV-WLSWHAI  161 (385)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHH
Confidence            776665543322 21    88999999999999999999998877652              1   233222 3468888


Q ss_pred             HH-HHHHHHHHHHHHHH
Q 038282          183 FI-MTAATLFSAFVSLI  198 (234)
Q Consensus       183 f~-~a~~~~va~~l~l~  198 (234)
                      |+ .+...++..++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       162 FAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88 77776666665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09952 shikimate transporter; Provisional

Probab=98.57  E-value=7.2e-07  Score=81.85  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=104.3

Q ss_pred             HHHhccHHHHHHHHHHH-HhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           45 LQALFSMDMLILFLATI-CGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      +..+|++++|....... +.....+.+..+.+++.+ +.|.++.....+..+.++...++.+++|+    +|||+.+...
T Consensus       243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~  322 (438)
T PRK09952        243 EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITG  322 (438)
T ss_pred             HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            34778888887654333 333333445567777765 46888877666666778888889999998    7888887766


Q ss_pred             HHHHHHHHHHHHh---hcc-chh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCcc
Q 038282          119 LLVSWIGHLLIAF---NVP-GGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDL  171 (234)
Q Consensus       119 ~~~~~i~~~ll~~---~~~-~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~  171 (234)
                      .++.+++.+.+..   ..+ ... .    +.+++.|...+..+++++|.|+.++.+..                  ..++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~  402 (438)
T PRK09952        323 ALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAA  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            6555444332222   111 111 1    55788888888899999999999876531                  1345


Q ss_pred             ccccc-cccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          172 NCIGV-ECFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       172 ~~d~~-g~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                      +.|.+ ++|...++ .+++++++.+..+.++
T Consensus       403 l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~  433 (438)
T PRK09952        403 LVTYFGGSWHSVAIYLLAGCLISAMTALLMK  433 (438)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            55644 57999888 8888888877776554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.56  E-value=9.9e-07  Score=82.09  Aligned_cols=160  Identities=8%  Similarity=0.048  Sum_probs=99.9

Q ss_pred             CCHHHHhcc-HHHHHHHHHH-HHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHH
Q 038282           42 YTILQALFS-MDMLILFLAT-ICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLM  114 (234)
Q Consensus        42 ~~~~~~lk~-~~F~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~  114 (234)
                      .+.++.+++ ++.+.+.... ++.....+.+..+++++.++ .|++..++....+...++..++.+++|+    +|||+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  318 (490)
T PRK10642        239 VSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF  318 (490)
T ss_pred             CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            456677663 3333322222 22223344456678888864 6999888888888888899999999998    899998


Q ss_pred             HHHHHHHHHH-HHHHHHh-hcc-ch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CC
Q 038282          115 LTIILLVSWI-GHLLIAF-NVP-GG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------ED  169 (234)
Q Consensus       115 l~~~~~~~~i-~~~ll~~-~~~-~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~  169 (234)
                      +....+...+ +..++.. ..+ .. ++    +.|++.|......+.+++++|.++..++.                 ..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~  398 (490)
T PRK10642        319 VILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLA  398 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            7766554332 2222222 111 12 12    66777777778888888999999888752                 13


Q ss_pred             ccccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          170 DLNCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       170 g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ++..+..+++..+++ ....++++.+..++++.
T Consensus       399 g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pe  431 (490)
T PRK10642        399 AWLVESTQNLMMPAYYLMVVAVIGLITGVTMKE  431 (490)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            344555566566665 66666666666655543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.55  E-value=4e-07  Score=81.74  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=93.6

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-h---h-hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-L---N-IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l---~-l~  140 (234)
                      ...+++.+.++.|.+  ..+...++.+++..+++++.|+    +++++.+.....+.+++..++....+.. .   . +.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            334566666777763  3456678888899999999998    6777877777777766665555433222 1   1 78


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      |++.+..++.....+.+.++.++.++.                 ..|.+.|. .+|+..|+ .+++++++.++.+.++++
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999988888877888888888877763                 13444443 35999999 888888887777666555


Q ss_pred             hhhhh
Q 038282          203 TRKFY  207 (234)
Q Consensus       203 ~~~~~  207 (234)
                      ++|..
T Consensus       392 ~~~~~  396 (399)
T PRK05122        392 APRAV  396 (399)
T ss_pred             ccccC
Confidence            55443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.55  E-value=2.2e-07  Score=84.20  Aligned_cols=151  Identities=13%  Similarity=-0.071  Sum_probs=97.9

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      .+..+|+|.++.+++..++.... ..+..+.+.+.++ .|.++.+.+.+.+..+++..+|+++.|+    .++++.+...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~  295 (417)
T PRK10489        217 FRFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLS  295 (417)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHH
Confidence            34577888887766554443322 2344567888888 7999999999999999999999999999    2334455566


Q ss_pred             HHHHHHHHHHHHhhccchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccc
Q 038282          119 LLVSWIGHLLIAFNVPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGV  176 (234)
Q Consensus       119 ~~~~~i~~~ll~~~~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~  176 (234)
                      .++.+++++++....+...    . ++|++.+...+...+++.+.+..++.++.                 ..|.+.|..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~  375 (417)
T PRK10489        296 TLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM  375 (417)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence            6666666555443222221    1 67777777777777888899988877763                 144555544


Q ss_pred             cccHHHHH-HHHHHHHHHHHH
Q 038282          177 ECFKLSFI-MTAATLFSAFVS  196 (234)
Q Consensus       177 g~Y~~~f~-~a~~~~va~~l~  196 (234)
                      | +..+++ .+++.++.+++.
T Consensus       376 g-~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        376 T-PVASASASGFGLLIIGVLL  395 (417)
T ss_pred             c-hhhHHHHHHHHHHHHHHHH
Confidence            4 455555 554444444444

>TIGR00895 2A0115 benzoate transport

Probab=98.55  E-value=6.4e-07  Score=79.25  Aligned_cols=126  Identities=18%  Similarity=0.119  Sum_probs=93.6

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-h--h--hHh
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-L--N--IMG  141 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l--~--l~G  141 (234)
                      ....+.+.++.|.++.+.+.+.++..++..++.++.|+    +|||+.+....++.+++.++.....+.. +  .  +.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  116 (398)
T TIGR00895        37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG  116 (398)
T ss_pred             HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence            34567777889999999999999999999999999998    7999988888887777766665543322 2  1  889


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHH
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l  197 (234)
                      ++.|...+...+++.|.+..++.++.              +   .+...+ ..+|+..|+ .+.+.++..++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       117 LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-VFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             cccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh-cccceeehhhhhhHHHHHHHHHH
Confidence            99999999999999999998877753              1   222222 235777887 6555555544443

>TIGR00897 2A0118 polyol permease family

Probab=98.55  E-value=7.4e-07  Score=80.60  Aligned_cols=154  Identities=14%  Similarity=0.013  Sum_probs=103.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHH-HH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT-II  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~-~~  118 (234)
                      .++.+|+|.+|...+..++..........+.+.+.++.|++..+++...++..+++.+|++++|+    ++|++.+. ..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~  294 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFG  294 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence            45688999999877776665555555667888898889999999999999999999999999999    56666543 22


Q ss_pred             HHHHHHHHHHHHh-h----ccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcc
Q 038282          119 LLVSWIGHLLIAF-N----VPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDL  171 (234)
Q Consensus       119 ~~~~~i~~~ll~~-~----~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~  171 (234)
                      .+..+++.+++.. +    .+.. .+    +.|++.+...+. .+.+.+. .+++.++.                 ..+.
T Consensus       295 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~  372 (402)
T TIGR00897       295 GVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVL  372 (402)
T ss_pred             HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333332222221 1    1111 11    677777776554 3455565 44566652                 1556


Q ss_pred             ccccccccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          172 NCIGVECFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                      ..|..| |...|+ .+++.++++++..++|
T Consensus       373 l~~~~g-~~~~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       373 FIGFFG-AIGVVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             HHhhcc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence            666654 667777 8888888888887765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.55  E-value=3.9e-07  Score=85.01  Aligned_cols=193  Identities=16%  Similarity=0.116  Sum_probs=131.8

Q ss_pred             cccCCCccccccccccCCccccCCCCCC---CCCCCCCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCC
Q 038282            9 LFLGKPKSIHLMRYRSIDSKYLSGWCQL---YQGEDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYP   84 (234)
Q Consensus         9 l~~~~p~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s   84 (234)
                      ++..+|.. ++.|.||++.+.++.....   -++-..++++.-|.|+...++++.++..-+...++.....+++ +.|++
T Consensus       237 ~vfsiP~~-~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s  315 (477)
T PF11700_consen  237 LVFSIPLF-LWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMS  315 (477)
T ss_pred             HHHHHHHH-HhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            34556664 4567776642222111000   0011235677778888888788877766555455666666666 67999


Q ss_pred             hhhHHHHHHHHHHhcccccccccc----cchH--HHHHHHHHHH-HHHHHHHH---h----hccch-hh----hHhhhhh
Q 038282           85 KRGISTFVSLVNIWNCLGRVVSGF----FRRP--LMLTIILLVS-WIGHLLIA---F----NVPGG-LN----IMGFNFG  145 (234)
Q Consensus        85 ~~~aa~~~si~~i~~~vGRl~~G~----~gr~--~~l~~~~~~~-~i~~~ll~---~----~~~~~-l~----l~G~~~G  145 (234)
                      ..+...+.-+..+..++|-+++|+    +|.|  +++.+.+++. .+.+..+.   .    ..+.. .|    ++|++.|
T Consensus       316 ~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G  395 (477)
T PF11700_consen  316 TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMG  395 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhh
Confidence            999988888999999999999999    6666  6666555444 22332222   1    11111 12    9999999


Q ss_pred             chhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          146 AQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       146 ~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      +.++..=++.+++-..++-++.              |   .|.+-|.+|+.+..+. ..++.+++.++...+..+
T Consensus       396 ~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  396 GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            9999999999999999888874              2   5667788999999999 999999998887666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.55  E-value=7.4e-08  Score=84.55  Aligned_cols=127  Identities=15%  Similarity=0.150  Sum_probs=96.4

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMGF  142 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G~  142 (234)
                      ...+.+.++.|.|+.+.+.+.++..++..++.+++|+    +|||+.+....++.+++..+.....+.. ++    +.|+
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   94 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA   94 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            3455667778999999999999999999999999999    7999998888888777776665543322 22    8899


Q ss_pred             hhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          143 NFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       143 ~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      +.|...+..+.++.|++..++.++.          |       .+...+ ..+|+..|+ .+.+.++..++.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893        95 AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-HFSWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHHhhhe
Confidence            9999999999999999998877652          1       222222 345889998 777776666655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.54  E-value=6.2e-07  Score=80.39  Aligned_cols=152  Identities=15%  Similarity=0.089  Sum_probs=100.9

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      +..+.+|+|.+|......++...........++.+.++.|.++...+..+++..++..++++..|+    +++++.+...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHH
Confidence            467789999988654433332222222345677888888999999999999999999999999998    6888877777


Q ss_pred             HHHHHHHHHHHHhhccchh--h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Cccccccccc
Q 038282          119 LLVSWIGHLLIAFNVPGGL--N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVEC  178 (234)
Q Consensus       119 ~~~~~i~~~ll~~~~~~~l--~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~  178 (234)
                      ..+.+++...+. ......  . +.|++.+...+.....+.|..+.++.+..              |   .|++.|.. +
T Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g  349 (381)
T PRK03633        272 VFVVILGSIAML-SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-S  349 (381)
T ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence            666666554433 111111  1 66766666677777777777766554421              1   55665554 4


Q ss_pred             cHHHHH-HHHHHHHHHHHH
Q 038282          179 FKLSFI-MTAATLFSAFVS  196 (234)
Q Consensus       179 Y~~~f~-~a~~~~va~~l~  196 (234)
                      ++..|+ .+.+.+++.++.
T Consensus       350 ~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        350 DNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            888888 766666554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.53  E-value=7.1e-07  Score=78.71  Aligned_cols=149  Identities=15%  Similarity=0.007  Sum_probs=100.0

Q ss_pred             CCCHHHHhccHH--HHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHH
Q 038282           41 DYTILQALFSMD--MLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPL  113 (234)
Q Consensus        41 ~~~~~~~lk~~~--F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~  113 (234)
                      ..+.++.+|+++  ++......++..........+.+.+.+ +.|.++.+.+...++..+.+.++++++|+    +|||+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (394)
T TIGR00883       207 RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP  286 (394)
T ss_pred             cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            345677888876  776666555554444445567888885 46999999999999999999999999999    78888


Q ss_pred             HHHHHHHHHHH-HHHHH-Hhh-cc-chh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------
Q 038282          114 MLTIILLVSWI-GHLLI-AFN-VP-GGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------  167 (234)
Q Consensus       114 ~l~~~~~~~~i-~~~ll-~~~-~~-~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------  167 (234)
                      .+.....+..+ ++.++ ... .+ ... +    +.|++.|...+...+++.|.++.++.++.                 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p  366 (394)
T TIGR00883       287 VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAP  366 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHH
Confidence            66644433332 32222 221 12 221 1    77888888999999999999998877652                 


Q ss_pred             -CCccccccccccHHHHH-HHHHH
Q 038282          168 -EDDLNCIGVECFKLSFI-MTAAT  189 (234)
Q Consensus       168 -g~g~~~d~~g~Y~~~f~-~a~~~  189 (234)
                       ..|.+.|..|.+...++ .++++
T Consensus       367 ~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       367 YIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHHHcCcchhHHHHHHHHH
Confidence             13455566666666666 44433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.52  E-value=2.1e-06  Score=78.48  Aligned_cols=159  Identities=10%  Similarity=-0.017  Sum_probs=105.2

Q ss_pred             CHHHHhccHHHHHHHHHHHHh-hhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHH
Q 038282           43 TILQALFSMDMLILFLATICG-VGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      +.++.+|++++|.+.+..++. ....+.+..+++++.++ .|.+..+.+...++..+...++.++.|+    ++||+.+.
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~  313 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSML  313 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            578899999999876665543 33344455678887765 6999888888888888888888999998    78888766


Q ss_pred             HHHHHHHHHHH-HHH-hh-ccc-hh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------C------C
Q 038282          117 IILLVSWIGHL-LIA-FN-VPG-GL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------E------D  169 (234)
Q Consensus       117 ~~~~~~~i~~~-ll~-~~-~~~-~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------g------~  169 (234)
                      ...++.++... ++. .. ... .. +    +.+++.+...+..+++++|+|++|+.++.            +      .
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~  393 (432)
T PRK10406        314 CFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVA  393 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHH
Confidence            55444332222 111 11 111 11 1    23344455556677888999999998873            1      1


Q ss_pred             ccccccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          170 DLNCIGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       170 g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      + ..+.+|+|...++ .++..+++.+..++++.|
T Consensus       394 ~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~  426 (432)
T PRK10406        394 L-SLKSIGMETAFFWYVTLMAVVAFLVSLMLHRK  426 (432)
T ss_pred             H-HHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            2 3456788888888 777777777776665443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.52  E-value=2.3e-07  Score=81.06  Aligned_cols=147  Identities=12%  Similarity=0.021  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHH
Q 038282           53 MLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLL  128 (234)
Q Consensus        53 F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~l  128 (234)
                      ||.+++..++...........++.+..+.+.++.+.+.+.++..+...++.+++|+    +|||+.+....++..++.++
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence            35556666665555444555677788889999999999999999999999999999    89999998887777666555


Q ss_pred             HHhhc-----cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHH
Q 038282          129 IAFNV-----PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKL  181 (234)
Q Consensus       129 l~~~~-----~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~  181 (234)
                      .....     +.. ++    +.|++.|...+...++++|++..++.++.              +   ++...+ ..+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~g~~~  159 (365)
T TIGR00900        81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA-TLGIKW  159 (365)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence            44322     222 22    88999999999999999999998877652              1   233322 346888


Q ss_pred             HHH-HHHHHHHHHHHHHHHH
Q 038282          182 SFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       182 ~f~-~a~~~~va~~l~l~l~  200 (234)
                      .|+ .+...+++.++.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~  179 (365)
T TIGR00900       160 AIWVDAVGFAISALLIVSVR  179 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            888 6666666655544443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.51  E-value=3.1e-07  Score=83.14  Aligned_cols=117  Identities=15%  Similarity=0.160  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHH
Q 038282           50 SMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIG  125 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~  125 (234)
                      +|.||.+++..++............+++.++.|.++.+.+++.+...+..++..+++|+    +|||+++..+.++.+++
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~   81 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLG   81 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHH
Confidence            46789888888887765555566677788899999999999999999999999999999    89999999988888776


Q ss_pred             HHHHHhhccchh-h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          126 HLLIAFNVPGGL-N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       126 ~~ll~~~~~~~l-~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .++.....+..+ . +.|++.|...+...++++|+++.++.++
T Consensus        82 ~~~~~~~~~~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~  124 (393)
T PRK11195         82 CLLMLFGIHPLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVK  124 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            655443222222 2 8899999999999999999999998876

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.50  E-value=2e-06  Score=80.63  Aligned_cols=155  Identities=12%  Similarity=0.087  Sum_probs=108.3

Q ss_pred             CHHHHhccHH-HHHHHHHHHHhhhhHHhHHhhHHHHH-HhhCCChhhHHHHHHHHHHhcccccccccc-----cchHHHH
Q 038282           43 TILQALFSMD-MLILFLATICGVGGTLLAIDNLRQIG-TSLGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLML  115 (234)
Q Consensus        43 ~~~~~lk~~~-F~~l~~~~~~~~~~~~~~~~~~~~~~-~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l  115 (234)
                      -..+.+|+|+ +|.++...++.....+.+...++.+. ++.|+++.+++.+.+..........+++|+     +|||+.+
T Consensus        12 ~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~   91 (500)
T PRK09584         12 VSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI   91 (500)
T ss_pred             CChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3355668875 88888777777766666667788877 457999998888777766555555567787     4999999


Q ss_pred             HHHHHHHHHHHHHHHhhcc-ch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCC--CC-----------------CCc
Q 038282          116 TIILLVSWIGHLLIAFNVP-GG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHK--EP-----------------EDD  170 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~-~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~--~~-----------------g~g  170 (234)
                      ....++.+++.+++..... .. ++    +.|++.|...+..++++++.|..++..  ..                 ..+
T Consensus        92 ~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g  171 (500)
T PRK09584         92 MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP  171 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence            9988888888776665422 22 22    789999998999999999999754322  11                 144


Q ss_pred             cccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          171 LNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      ++.|. .+|+..|+ .++..+++.+..+.
T Consensus       172 ~l~~~-~g~~~~F~i~~i~~~i~~i~~~~  199 (500)
T PRK09584        172 WLAAK-YGWSVAFALSVVGMLITVVNFAF  199 (500)
T ss_pred             HHHHh-hCHHHHHHHHHHHHHHHHHHHHH
Confidence            44443 46999999 77655655544433

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.49  E-value=1.1e-06  Score=77.58  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=101.2

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +.++.++++++|.++...++............+.+.+ +.|.++.+.+.+.++..+...+++++.|+    ++||+.+..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  270 (375)
T TIGR00899       191 EVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLL  270 (375)
T ss_pred             hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHH
Confidence            3455788888887666555443333333445666654 57999998888888877788888899998    688887776


Q ss_pred             HHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccccc
Q 038282          118 ILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIG  175 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~  175 (234)
                      ..++..+...++....+.. .+    +.|++.|...+.....+.|.+..++ ++.                 ..|.+.|.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~g~~~~~  349 (375)
T TIGR00899       271 AALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRA-GAATTLYTNTGRVGWIIAGSVGGILAER  349 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6655544443333322222 21    6788888888888888888887543 432                 14444443


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHHH
Q 038282          176 VECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                       .+|+..|+ .+++.+++.++.+.
T Consensus       350 -~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       350 -WSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             -ccchhHHHHHHHHHHHHHHHHhe
Confidence             36999999 88877777776544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.49  E-value=1.5e-07  Score=81.98  Aligned_cols=137  Identities=22%  Similarity=0.264  Sum_probs=100.9

Q ss_pred             HHHHhhhhHHhHHhhHH-HHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc
Q 038282           59 ATICGVGGTLLAIDNLR-QIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV  133 (234)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~  133 (234)
                      ..++...........++ .+.++.|.|+.+.+.+.++..+...++.+++|+    +|||+++....++.+++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~   83 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS   83 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence            33443333333445566 677788999999999999999999999999999    7999999998888888844444433


Q ss_pred             cchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHH
Q 038282          134 PGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATL  190 (234)
Q Consensus       134 ~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~  190 (234)
                      +... +    +.|++.+...+...+++.|.+..++.++.              +   ++.+. ...+|+.+|+ .+++.+
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~~~~~~~~~~~~~~~  162 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-SYFGWRWAFLISAILSL  162 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHCHHCCHHHHHHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-hccccccccccccchhh
Confidence            3222 2    88999999999999999999999888753              1   33333 3345888898 888888


Q ss_pred             HHHHHH
Q 038282          191 FSAFVS  196 (234)
Q Consensus       191 va~~l~  196 (234)
                      ++.++.
T Consensus       163 ~~~il~  168 (352)
T PF07690_consen  163 IAAILF  168 (352)
T ss_dssp             HHHHHH
T ss_pred             hhhhhH
Confidence            877643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.48  E-value=1.1e-06  Score=77.43  Aligned_cols=114  Identities=19%  Similarity=0.229  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHH-HHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQ-IGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGH  126 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~-~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~  126 (234)
                      .||..++.+++............+. +.++.|+|+.+.+.+.++..++..++.+++|+    +|||+.+....++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            5777777776655555555566774 67789999999999999999999999999999    899999999888888887


Q ss_pred             HHHHhhc-cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          127 LLIAFNV-PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       127 ~ll~~~~-~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ++..... +.. ++    +.|++.+ .+....+++++.+..++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~  126 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGT  126 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhH
Confidence            7766544 322 21    6787754 45556788999998887765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.47  E-value=3.5e-06  Score=77.14  Aligned_cols=158  Identities=11%  Similarity=0.016  Sum_probs=96.8

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchH-HHHHHH-
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRP-LMLTII-  118 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~-~~l~~~-  118 (234)
                      +.+|++.+|.+.+..++..........+.+.+.++ .|.++.+++...++.++.+.+|++++|+    ++++ +..... 
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  325 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVF  325 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence            47899999998776666555545566788899887 5999999999999999999999999999    3222 222211 


Q ss_pred             HH-HHHHHHHHHHhh-ccc-h-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C--------Cccc
Q 038282          119 LL-VSWIGHLLIAFN-VPG-G-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E--------DDLN  172 (234)
Q Consensus       119 ~~-~~~i~~~ll~~~-~~~-~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g--------~g~~  172 (234)
                      .. ...++.+++... ... . .+    +.|++..+........+.|.++.++.++.          +        .|.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l  405 (438)
T TIGR00712       326 FMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  405 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence            11 112222222221 111 1 11    33433222222223456788988887753          1        2333


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSLILVLMTR  204 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~  204 (234)
                      .|.. +|+.+|+ .++..+++.+..+.+.+++|
T Consensus       406 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       406 VDFF-GWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHhc-cchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4443 4999999 88888888777766654433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.47  E-value=8.4e-07  Score=80.57  Aligned_cols=79  Identities=11%  Similarity=-0.096  Sum_probs=64.4

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      ....|+|+||.+++..++...+.......++.+.++ .|+|..+.+.+.++..+...++++++|+    +|||+.+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528          4 MYYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             chhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            457789999998887777665554566777777776 7999999999999999999999999999    78898877655


Q ss_pred             HHHH
Q 038282          120 LVSW  123 (234)
Q Consensus       120 ~~~~  123 (234)
                      .+.+
T Consensus        84 ~~~~   87 (420)
T PRK09528         84 SGLL   87 (420)
T ss_pred             HHHH
Confidence            4443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.47  E-value=2.5e-06  Score=77.88  Aligned_cols=142  Identities=13%  Similarity=0.081  Sum_probs=106.1

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh--CCChhhHHHHHHHHHHhcccccccccc----cchHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL--GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~--G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      +.++.+|+|.++...+..++..+....+..+++++.++.  +.++..++...+.......+||++.|+    +++++.+.
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~  303 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM  303 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            456889999999988888887777766778899998876  455556666777777788999999999    67777777


Q ss_pred             HHHHHHHHHHHHHHhhcc-chh--h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------C-------Cccccccc-
Q 038282          117 IILLVSWIGHLLIAFNVP-GGL--N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------E-------DDLNCIGV-  176 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~~~~-~~l--~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------g-------~g~~~d~~-  176 (234)
                      +..+..++.+++.....+ ..+  + +.|++.+..++.+-++..+..|.+.....        |       .|.+.|.. 
T Consensus       304 i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~~~  383 (410)
T TIGR00885       304 AYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDMKE  383 (410)
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHHhc
Confidence            777777766666655333 223  3 88999999999999999999997775421        1       55666743 


Q ss_pred             ----cccHHHHH
Q 038282          177 ----ECFKLSFI  184 (234)
Q Consensus       177 ----g~Y~~~f~  184 (234)
                          |+|+.+|+
T Consensus       384 ~~~~~~~~~~~~  395 (410)
T TIGR00885       384 IAAAPAVNTSFI  395 (410)
T ss_pred             ccccCccchHHH
Confidence                57888887

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.46  E-value=5.1e-07  Score=82.64  Aligned_cols=126  Identities=13%  Similarity=0.171  Sum_probs=93.1

Q ss_pred             HHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc---cc-h-hh----hH
Q 038282           74 LRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV---PG-G-LN----IM  140 (234)
Q Consensus        74 ~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~---~~-~-l~----l~  140 (234)
                      ..+..++.|+|+.+.+...++..++..++.+++|+    +|||+.+....++.+++.++.....   +. . ++    +.
T Consensus        49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  128 (438)
T TIGR00712        49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLN  128 (438)
T ss_pred             hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            34555667999999999999999999999999999    7999888887777777665554321   11 1 11    77


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |++.|..++.....+.|+|..++.++.          +       .+...+...+|+.+|+ .+.++++..++.++.
T Consensus       129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888899999998888763          1       1122334568999999 788777766555444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.45  E-value=1.8e-06  Score=77.66  Aligned_cols=124  Identities=18%  Similarity=0.148  Sum_probs=92.5

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMGF  142 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G~  142 (234)
                      ...+.+.++.|.|+.+.+.+.+...++..++.+++|+    +|||+.+....++.+++.++.....+.. ++    +.|+
T Consensus        36 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  115 (406)
T PRK11551         36 VAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGV  115 (406)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            3456778889999999999999999999999999999    8999999888877777665555443322 21    8899


Q ss_pred             hhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHH
Q 038282          143 NFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVS  196 (234)
Q Consensus       143 ~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~  196 (234)
                      +.|...+...+++.|.+..++.++.          |       .+.. ....+|+..|+ .+.+.++..++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK11551        116 GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA-AGDAAWRHIFYVGGVGPLLLVPLL  186 (406)
T ss_pred             hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887763          1       1111 22346888888 665555554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.44  E-value=1.5e-06  Score=78.54  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             hHHHHHHhhCCC--------hhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh-ccc---h
Q 038282           73 NLRQIGTSLGYP--------KRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN-VPG---G  136 (234)
Q Consensus        73 ~~~~~~~~~G~s--------~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~-~~~---~  136 (234)
                      ..+.+..+.+++        ..+.+.+.++..++..++.+++|+    +|||+++.+..++..++..+.... ...   .
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (481)
T TIGR00879        50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM  129 (481)
T ss_pred             hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            344455555555        789999999999999999999998    899999988888877776665432 222   2


Q ss_pred             h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C------Cc---cccccccccHHHHH-HHHHHHHH
Q 038282          137 L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E------DD---LNCIGVECFKLSFI-MTAATLFS  192 (234)
Q Consensus       137 l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g------~g---~~~d~~g~Y~~~f~-~a~~~~va  192 (234)
                      +  .  +.|++.|...+....+++|.+..++.+..          |      .+   .......+|+..|+ .+...++.
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  209 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL  209 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence            2  1  88999999999999999999998888763          1      11   12224568999998 66655555


Q ss_pred             HHHHHHH
Q 038282          193 AFVSLIL  199 (234)
Q Consensus       193 ~~l~l~l  199 (234)
                      .++.+++
T Consensus       210 ~~~~~~l  216 (481)
T TIGR00879       210 FLGLFFL  216 (481)
T ss_pred             HHHHhcC
Confidence            5444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.44  E-value=1.5e-06  Score=75.15  Aligned_cols=145  Identities=27%  Similarity=0.380  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHH
Q 038282           54 LILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLI  129 (234)
Q Consensus        54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll  129 (234)
                      |.+....++............+.+.++.|.++.+.+...++..+...++.+++|+    +|||+.+.....+..++.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            3344444444444444456677888889999999999999999999999999999    799998888888888877766


Q ss_pred             Hhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HH
Q 038282          130 AFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MT  186 (234)
Q Consensus       130 ~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a  186 (234)
                      ....+.. .+    +.|++.+...+..++++.|+++.|+.++.              +   .+...+ ..+++..|+ .+
T Consensus        82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~  160 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-SLGWRWLFLILA  160 (352)
T ss_pred             HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            6543322 22    88999999999999999999999887763              1   223322 234788888 77


Q ss_pred             HHHHHHHHHHHHH
Q 038282          187 AATLFSAFVSLIL  199 (234)
Q Consensus       187 ~~~~va~~l~l~l  199 (234)
                      ...+++.++...+
T Consensus       161 ~~~~~~~~~~~~~  173 (352)
T cd06174         161 ILGLLLALLLLFL  173 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03545 putative arabinose transporter; Provisional

Probab=98.44  E-value=2.5e-06  Score=76.58  Aligned_cols=154  Identities=12%  Similarity=0.051  Sum_probs=101.7

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +.++.+|+|.+|..+...++..........+++++.++ .|.|+.+++.+.++.++++.+|+++.|+    ++|+... .
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~  275 (390)
T PRK03545        197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I  275 (390)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence            45789999999876665555444444445667777776 5999999999999999999999999999    5665543 3


Q ss_pred             HHHHHHHHHHHH-Hhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccc
Q 038282          118 ILLVSWIGHLLI-AFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCI  174 (234)
Q Consensus       118 ~~~~~~i~~~ll-~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d  174 (234)
                      ...+..++..++ ....+.. ++    +.|++.+...+.....+.+..+ ++.++.                 ..|.+.|
T Consensus       276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~  354 (390)
T PRK03545        276 AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL  354 (390)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333332 2222222 21    7788877777777777777765 344431                 1455554


Q ss_pred             cccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          175 GVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       175 ~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      . -+|+..|+ .+.+.+++.++....
T Consensus       355 ~-~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        355 H-LGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             c-cChhHHHHHHHHHHHHHHHHHHHH
Confidence            4 57889998 777777777665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.43  E-value=3.5e-06  Score=76.45  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=114.3

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHHhcccccccccc---cchHHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF---FRRPLMLTII  118 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~---~gr~~~l~~~  118 (234)
                      +..+.+|+|+-|..++..++.....+..+.++.|+.++. |+|....+.++-+++++..+|.++.|+   .+.++.+...
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~  282 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAA  282 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHH
Confidence            467899999999999999998888888888999999885 999999999999999999999999999   3444455555


Q ss_pred             HHHHHHHHHHHHhh-ccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccccc
Q 038282          119 LLVSWIGHLLIAFN-VPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIG  175 (234)
Q Consensus       119 ~~~~~i~~~ll~~~-~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~  175 (234)
                      ..+.++.++.+... ....+ .    +.|+..+........-.++ ..+++-+..                 .+|...|.
T Consensus       283 ~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         283 LLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55565555555442 22222 1    4455555554444444445 333443321                 27777777


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 038282          176 VECFKLSFI-MTAATLFSAFVSLILVLMTR  204 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~  204 (234)
                       .+|....+ .+.+.+++.++.++..+.++
T Consensus       362 -~g~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         362 -LGYAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             -hchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             88999999 88888888888776654433

>PRK10133 L-fucose transporter; Provisional

Probab=98.43  E-value=4e-06  Score=77.16  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=89.6

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHH-Hh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIG-TS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .++.+|+|.+|...+..++............+++. ++ .|.|+.+++...+...++..+||++.|+    +++++++..
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~  330 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            46789999999877666665555444455566664 44 6999999999999999999999999999    688888777


Q ss_pred             HHHHHHHHHHHHHhhcc-chh--h-hHhhhhhchhhhhHHHHHHhhCCC
Q 038282          118 ILLVSWIGHLLIAFNVP-GGL--N-IMGFNFGAQWPLVFAITSEFFGPK  162 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~-~~l--~-l~G~~~G~~~~~~p~l~~~~fG~~  162 (234)
                      ...+.++++++...... ..+  + +.|++.|..++..-+...+.++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~  379 (438)
T PRK10133        331 YALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD  379 (438)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence            66666555544443222 122  2 899999999999999999998864

>PRK11043 putative transporter; Provisional

Probab=98.42  E-value=2.9e-06  Score=76.37  Aligned_cols=128  Identities=16%  Similarity=0.128  Sum_probs=95.0

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHh
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMG  141 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G  141 (234)
                      ....+++.++.|.|+.+.+...++..++..++.+++|+    +|||+.+.....+.+++.++.....+.. ++    +.|
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  105 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA  105 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34566677889999999999999999999999999999    8999999888877777766655543322 22    778


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      ++.+...+...+++.|.+..++.++.                 ..+.+.+ ..+|+..|+ .+.+.++..++.+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN-HFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHc
Confidence            88888888888899999988765432                 1333333 346889998 777777766655444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.42  E-value=3.3e-06  Score=77.70  Aligned_cols=152  Identities=13%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhH----HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLLA----IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~----~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      ..+|+.+ |.++...++........    ....+.+.++ |+|..+.+...+...++..++.+++|+    +|||+++..
T Consensus        21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~   98 (452)
T PRK11273         21 PTYRRLR-WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   98 (452)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHH
Confidence            3444433 55555444433322221    1234455555 999999999999999999999999999    899999988


Q ss_pred             HHHHHHHHHHHHHhhc----cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------CCc---c----
Q 038282          118 ILLVSWIGHLLIAFNV----PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------EDD---L----  171 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~----~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g~g---~----  171 (234)
                      ..++.+++.+++....    +.. ++    +.|++.|..++.....+.+.|..++.++.          |.+   .    
T Consensus        99 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~  178 (452)
T PRK11273         99 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLL  178 (452)
T ss_pred             HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            8888777766554421    111 11    77888888888777888899988877652          111   1    


Q ss_pred             ccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          172 NCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      ......+|+..|+ .+.+.++..++.++.
T Consensus       179 ~~~~~~gw~~~f~i~~~~~~~~~~l~~~~  207 (452)
T PRK11273        179 GMAWFNDWHAALYMPAFAAILVALFAFAM  207 (452)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112357889998 777666655554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.42  E-value=1.3e-06  Score=80.11  Aligned_cols=142  Identities=16%  Similarity=0.231  Sum_probs=105.3

Q ss_pred             HHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh
Q 038282           57 FLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN  132 (234)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~  132 (234)
                      .+..++...........++.+.++.|.+..+.+++.+...++..++.+++|+    +|||+.+....++..++.++....
T Consensus         8 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   87 (485)
T TIGR00711         8 MLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc
Confidence            3333333333333455678888999999999999999999999999999999    799999998888888877666554


Q ss_pred             ccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHH
Q 038282          133 VPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAAT  189 (234)
Q Consensus       133 ~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~  189 (234)
                      .+.. ++    +.|++.|...+...+++.|.+..++.++.              +   ++++.+ ..+|+..|+ .+.+.
T Consensus        88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~w~~~f~~~~~~~  166 (485)
T TIGR00711        88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-NYHWRWIFLINVPIG  166 (485)
T ss_pred             CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-CcCceehhhhhhHHH
Confidence            3322 21    88999999999999999999998877652              1   333332 356888998 77777


Q ss_pred             HHHHHHHHHH
Q 038282          190 LFSAFVSLIL  199 (234)
Q Consensus       190 ~va~~l~l~l  199 (234)
                      +++.++.+..
T Consensus       167 ~~~~~~~~~~  176 (485)
T TIGR00711       167 IIVVVVAFFI  176 (485)
T ss_pred             HHHHHHHHHH
Confidence            6666655444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.39  E-value=5.7e-06  Score=75.23  Aligned_cols=155  Identities=18%  Similarity=0.199  Sum_probs=113.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHh----HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLL----AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML  115 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~----~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l  115 (234)
                      .++..|..+.- +++..+++-.+.+.    +....+++.++.|+|..|.+.+.|.+.+.-.++++++|.    .+.|..+
T Consensus        19 ~~~~y~~~r~q-if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm   97 (448)
T COG2271          19 IDKTYKRWRIQ-IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM   97 (448)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence            34555555443 45555554433333    234567778888999999999999999999999999999    5667788


Q ss_pred             HHHHHHHHHHHHHHHhhccchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------CCcc--------c
Q 038282          116 TIILLVSWIGHLLIAFNVPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------EDDL--------N  172 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g~g~--------~  172 (234)
                      ...+++.++..+++-+..+..+    + +.|..-|--++-.--++.+.|.++..|+.          |++.        .
T Consensus        98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~  177 (448)
T COG2271          98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF  177 (448)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence            8899998888877766443222    2 88999999999999999999999999973          2221        1


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      +...++++.+|+ -++++++.+++.+.+
T Consensus       178 ~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         178 FAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            223459999999 666666666665554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.39  E-value=3.4e-06  Score=75.73  Aligned_cols=126  Identities=10%  Similarity=0.155  Sum_probs=92.4

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      ....++.+.++.|.|+.+.+...++..+...++.+++|+    +|||+++....++..++.++.....+.. ++    +.
T Consensus        27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (394)
T PRK11652         27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQ  106 (394)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            445678889999999999999999999999999999999    8999998888877777766655533322 22    77


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVS  196 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~  196 (234)
                      |++.|...+....++.|.+..++.++.              +   .+...+ ..+|+.+|+ .+.+.++..++.
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-~~g~~~~f~~~~~~~~~~~~~~  179 (394)
T PRK11652        107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT-LFGWRACYLFLLLLGAGVTFSM  179 (394)
T ss_pred             HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHH
Confidence            888888777777888888876665542              1   233322 346899998 666665554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.39  E-value=2.1e-06  Score=79.30  Aligned_cols=122  Identities=12%  Similarity=0.095  Sum_probs=80.9

Q ss_pred             HhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhcc-c-hh-h----
Q 038282           71 IDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVP-G-GL-N----  138 (234)
Q Consensus        71 ~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~-~-~l-~----  138 (234)
                      ...++.+.+ +.|++..+++.+.+..+++..+|+++.|+    ++|++.+.....+..++.+++..... . .. .    
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            356788885 68999999999999999999999999999    68888777666555554433322111 1 11 1    


Q ss_pred             hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHH
Q 038282          139 IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~  193 (234)
                      +.++...+..+..++++.+.++.++.++.              |   .|.+.|.. +|...+. .++.+.+.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~~~  446 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTFVV  446 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHH
Confidence            23333344567788899999998887763              1   44444544 4777776 444443333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.39  E-value=2.2e-06  Score=76.98  Aligned_cols=152  Identities=10%  Similarity=-0.008  Sum_probs=102.9

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHH-hcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNI-WNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i-~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +.++.+|+|.+|.+.+..++............+++.+|.|+++.+.+.+.++.++ ...+|.++.|+    +|+++.+..
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~  279 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL  279 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4678999999988777766665555455567788899999999999998888874 66688999998    677777766


Q ss_pred             HHHHHHHHHHHHH-hhc----cc-h-hh----hHhhhhhchhhhhHHHHHHhhCC-CCCCCC-----------------C
Q 038282          118 ILLVSWIGHLLIA-FNV----PG-G-LN----IMGFNFGAQWPLVFAITSEFFGP-KNHKEP-----------------E  168 (234)
Q Consensus       118 ~~~~~~i~~~ll~-~~~----~~-~-l~----l~G~~~G~~~~~~p~l~~~~fG~-~~~~~~-----------------g  168 (234)
                      ..++.++..+... ...    +. . ++    +.+++.|..++...+...+..++ ++.++.                 .
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~  359 (390)
T TIGR02718       280 GVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI  359 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            5555433222221 111    11 1 12    44667788888777787788776 555542                 1


Q ss_pred             CccccccccccHHHHH-HHHHHHHHHHH
Q 038282          169 DDLNCIGVECFKLSFI-MTAATLFSAFV  195 (234)
Q Consensus       169 ~g~~~d~~g~Y~~~f~-~a~~~~va~~l  195 (234)
                      +|.++|.. +|+..|. ++++.+++.++
T Consensus       360 ~G~l~~~~-G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       360 AGYLTDRF-GYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHH-ccHHHHHHHHHHHHHHHHH
Confidence            56666654 5888888 77766666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.38  E-value=2.2e-06  Score=75.12  Aligned_cols=129  Identities=15%  Similarity=0.163  Sum_probs=94.8

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      +....+++.++.|.|+.+.+...++..++..++.+.+|+    +|||+.+....++.+++.++.....+.. ++    +.
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA  101 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999999999999999999999    8999999988888888776665543332 22    78


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC--------CCc-----cc---cccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP--------EDD-----LN---CIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~--------g~g-----~~---~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |++.|..++.....+.+.+. |+.+..        +.|     ..   .....+|+..|+ .+.+.++.+++.+..
T Consensus       102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888777778888886 444432        111     00   112347899999 777777766665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.38  E-value=6.7e-06  Score=74.01  Aligned_cols=147  Identities=11%  Similarity=-0.025  Sum_probs=95.9

Q ss_pred             cHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHH
Q 038282           50 SMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWI  124 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i  124 (234)
                      ||.||.+....++...........++.+.++ .|.|+.+.+.+.++..+...++++++|+    +|||+.+...+....+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~   80 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLV   80 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            6789988776666555544455677777765 6999999999999999999999999999    8999988765555443


Q ss_pred             HHHHH---Hhhc----cch--hh----hHhhhhhchhhhhHHHHHHhhCCC--CCCCC-------------CCccccccc
Q 038282          125 GHLLI---AFNV----PGG--LN----IMGFNFGAQWPLVFAITSEFFGPK--NHKEP-------------EDDLNCIGV  176 (234)
Q Consensus       125 ~~~ll---~~~~----~~~--l~----l~G~~~G~~~~~~p~l~~~~fG~~--~~~~~-------------g~g~~~d~~  176 (234)
                      +....   ....    ...  ..    +.|++.+...+....++.+.-..+  .++..             .++.+.+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--  158 (396)
T TIGR00882        81 LFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS--  158 (396)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc--
Confidence            32211   1110    011  11    566777777777777766642222  12221             1444433  


Q ss_pred             cccHHHHH-HHHHHHHHHHHHHH
Q 038282          177 ECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       177 g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      -+++..|+ .+.+.++.+++.+.
T Consensus       159 ~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       159 IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHH
Confidence            37888998 77777777655543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.37  E-value=5.6e-06  Score=74.16  Aligned_cols=155  Identities=15%  Similarity=0.052  Sum_probs=99.1

Q ss_pred             HHHHhccHHHHHHHHHHHH-hhhhHHhHHhhHHHHHHhhCCChh----hHHHHHHHHHHhcccccccccc----cchHHH
Q 038282           44 ILQALFSMDMLILFLATIC-GVGGTLLAIDNLRQIGTSLGYPKR----GISTFVSLVNIWNCLGRVVSGF----FRRPLM  114 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~-~~~~~~~~~~~~~~~~~~~G~s~~----~aa~~~si~~i~~~vGRl~~G~----~gr~~~  114 (234)
                      ..+.+|+++++..+....+ ............+.+..+.+.+..    ..+.+.++.+++..++++.+|+    ++|++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~  290 (408)
T PRK09874        211 VVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI  290 (408)
T ss_pred             HHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            4567788888764333222 222221233456666666533322    2345666777888899999998    688888


Q ss_pred             HHHHHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Cccc
Q 038282          115 LTIILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLN  172 (234)
Q Consensus       115 l~~~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~  172 (234)
                      +.....+.+++.+.+....+.. ++    +.|++.|...+...+++.+..+.++.++.              |   .|.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l  370 (408)
T PRK09874        291 LITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAI  370 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHH
Confidence            8777766666555444333222 21    78999999988888888888887777763              1   4444


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      .|. .+|+..|+ .+++.++++++....
T Consensus       371 ~~~-~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        371 SAN-YGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             Hhh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence            443 46999999 888888887766543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.36  E-value=1.8e-06  Score=74.62  Aligned_cols=146  Identities=24%  Similarity=0.320  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHHhcccccccccc----cchHH-HHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPL-MLTIILLVSWI  124 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~-~l~~~~~~~~i  124 (234)
                      |++|.+.+..++..........+.+.+.++. |.++.+.+...++.+++..++++++|+    ++||+ .+.....+..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4555555555554444444556777888776 999999999999999999999999998    68888 88888877777


Q ss_pred             HHHHHHhhccch-h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHH
Q 038282          125 GHLLIAFNVPGG-L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLS  182 (234)
Q Consensus       125 ~~~ll~~~~~~~-l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~  182 (234)
                      +...+....+.. .   . +.|++.+...+....++.|.++.++.++.                 ..+...| ..+|+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-~~~~~~~  333 (352)
T cd06174         255 GLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGV  333 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchH
Confidence            776665533222 1   2 88999999999999999999998888763                 1333333 4578899


Q ss_pred             HH-HHHHHHHHHHHHH
Q 038282          183 FI-MTAATLFSAFVSL  197 (234)
Q Consensus       183 f~-~a~~~~va~~l~l  197 (234)
                      |+ .+++.+++.++..
T Consensus       334 ~~~~~~~~~i~~i~~~  349 (352)
T cd06174         334 FLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHhe
Confidence            99 8888888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.36  E-value=1.3e-06  Score=77.55  Aligned_cols=128  Identities=15%  Similarity=0.157  Sum_probs=99.2

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      ....++.+.++.|+|+.+.+.+.++..++..++++++|+    +|||+++....++.+++.++.....+.. ++    +.
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~   89 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLH   89 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            446788889999999999999999999999999999998    7999999888888887777666543322 21    88


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      |++.+...+...+++.|.+..++.++.              +   .+...+ ..+|+..|+ .+.++++..++...
T Consensus        90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102         90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV-WFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887753              1   233333 236888988 77777666655543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.35  E-value=3.1e-06  Score=75.88  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=98.6

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      ....++.+.++.|.|+.+.+...++..++..++.++.|+    +|||+.+....++.+++..+.....+.. ++    +.
T Consensus        22 ~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  101 (392)
T PRK10473         22 YLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ  101 (392)
T ss_pred             HhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            345688888999999999999999999999999999999    8999999888888777776665543322 22    78


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |++.|...+....++.|.+..++.++.              +   ++... ...+|+..|+ .+++.++..++.+..
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~-~~~g~~~~~~~~~~~~~i~~~~~~~~  177 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM-LKFPWQSLFYTMAAMGILVLLLSLFI  177 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcChHHHHHHHHHHHHHHHHHHHHH
Confidence            899898888899999999998887653              1   22222 2357889998 777777776665443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.34  E-value=3.3e-06  Score=76.39  Aligned_cols=125  Identities=14%  Similarity=0.092  Sum_probs=85.5

Q ss_pred             CHHHHhccHHHHHHHHHHHHhh---hhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282           43 TILQALFSMDMLILFLATICGV---GGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML  115 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~---~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l  115 (234)
                      +.++.+|++.++.....+.+..   .....+..+++.+.++.|.++.+.+.+.++.+++..+|++++|+    ++|++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            4678899999886544332211   12222456788888889999999999999999999999999998    6888877


Q ss_pred             HHHHHHHHHHHHHHHhh-ccchh-h---hHhhh--hhchhhhhHHHHHHhhCCCCCCCC
Q 038282          116 TIILLVSWIGHLLIAFN-VPGGL-N---IMGFN--FGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~-~~~~l-~---l~G~~--~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      ....++.++.++.+... ..... .   ++|++  ..+..+..|.++.|.++.++.++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  358 (426)
T PRK12307        300 SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLG  358 (426)
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhh
Confidence            77766665554444322 12111 1   33433  234456788899999999888863

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.34  E-value=1.4e-06  Score=78.67  Aligned_cols=159  Identities=10%  Similarity=0.024  Sum_probs=100.7

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHH-HHHhhCCChhhHHHHHHHHHH-hcccccccccc----cchHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQ-IGTSLGYPKRGISTFVSLVNI-WNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~-~~~~~G~s~~~aa~~~si~~i-~~~vGRl~~G~----~gr~~~l~  116 (234)
                      +.++.+|+|.+|.+++..++............++ +.++.|+++.+.+.+.+..++ +..+|.+++|+    +++++.+.
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~  280 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM  280 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4567899999998776655544332222222333 445589999988888776654 57888999998    67777766


Q ss_pred             HHHHHHHHHHHHH---Hhhccc-hh-h--------hHhhhhhchhhhhHHHHHHhhCCCCCCCC-------------CCc
Q 038282          117 IILLVSWIGHLLI---AFNVPG-GL-N--------IMGFNFGAQWPLVFAITSEFFGPKNHKEP-------------EDD  170 (234)
Q Consensus       117 ~~~~~~~i~~~ll---~~~~~~-~l-~--------l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-------------g~g  170 (234)
                      ....+.++..+.+   ....+. .. +        +.|++.+...+....++.+.++.++++..             .+|
T Consensus       281 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        281 LFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555554443322   221121 21 1        34566777788888888888887776632             155


Q ss_pred             cccccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          171 LNCIGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      .+.|.. +|...|. .+.+++++.++......+
T Consensus       361 ~l~~~~-G~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        361 YLVEAY-GWPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHh-ChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            566654 5888888 777777776665444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.34  E-value=3.8e-06  Score=75.79  Aligned_cols=146  Identities=11%  Similarity=-0.003  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhhhh----HHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGG----TLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVS  122 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~----~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~  122 (234)
                      +++|++.+...+....    ...+...++.+.++.|.|+.+.+...+...++..++.++.|.    +|||+++....++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            5666655555444332    222344677788899999999999999999999999999998    89999988888777


Q ss_pred             HHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccH
Q 038282          123 WIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFK  180 (234)
Q Consensus       123 ~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~  180 (234)
                      +++.++.....+.. ++    +.|++.+...+...+.+.|.+..++..+.              +   .+...+ ..+|+
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-~~~w~  167 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-VLPWR  167 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcc
Confidence            77766655543322 22    77888888888888999999987765542              1   222222 35788


Q ss_pred             HHHH-HHHHHHHHHHHHH
Q 038282          181 LSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       181 ~~f~-~a~~~~va~~l~l  197 (234)
                      .+|+ .+++.+++.+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        168 GMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            9998 7777777665443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.33  E-value=3.4e-06  Score=77.90  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      .+..+++..++.......+...++.+.++.|.|+.+.+.+.+...++..++.++.|+    +|||+++....++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  100 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL  100 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            445555555554444444455677788889999999999999999999999999999    8999998888888877777


Q ss_pred             HHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          128 LIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       128 ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ++....+.. ++    +.|++.|...+....++.|.+..++.++
T Consensus       101 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~  144 (496)
T PRK03893        101 ACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNK  144 (496)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            666543322 22    8899999999999999999999887765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.33  E-value=5e-06  Score=75.10  Aligned_cols=122  Identities=11%  Similarity=0.062  Sum_probs=93.9

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      +...++.+.++.|+|..+.+.+.+...++..++.+..|+    +|||+++..+..+.+++.++.....+.. ++    +.
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~  107 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLG  107 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHH
Confidence            335677888899999999999999999999999999999    8999999999999999888777654432 22    88


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFS  192 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va  192 (234)
                      |++.|...+..+.++.+.|. ++.+..              +   .+.+.+..++|+..+. .+...+++
T Consensus       108 Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        108 GVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999996 555542              1   2223333356788776 55554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.32  E-value=9e-06  Score=73.71  Aligned_cols=153  Identities=8%  Similarity=-0.068  Sum_probs=95.3

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc-c----chHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-F----RRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-~----gr~~~l~~  117 (234)
                      +.++.+|+|+++.+.+..+.............|.+.++.+.++.+.+.+.++.++...++....++ .    +.++.+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  279 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMA  279 (400)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            467889999998765554433322222345677778887777778888888877766544443444 2    22344555


Q ss_pred             HHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccccc
Q 038282          118 ILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIG  175 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~  175 (234)
                      .+++.+++.+++....+.. +.    +++++.+...+..++++.+..+.++.++.                 ..|.+.|.
T Consensus       280 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        280 GLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            5556666655554432222 21    67888888888888999999999888874                 26666776


Q ss_pred             ccc---cHHHHH-HHHHHHHHHHH
Q 038282          176 VEC---FKLSFI-MTAATLFSAFV  195 (234)
Q Consensus       176 ~g~---Y~~~f~-~a~~~~va~~l  195 (234)
                      +++   +..+|+ .+.+.+++.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        360 GKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HhhcCCcchHHHHHHHHHHHHHHH
Confidence            543   456666 55555555433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.31  E-value=9.1e-06  Score=71.54  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=93.6

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh---hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS---LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~---~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      .++.+|+|.+|+..+.+|+..+....+..+.+.+..+   .|+++.+++...+....+..+||++.++    +++++.+.
T Consensus       133 ~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~  212 (310)
T TIGR01272       133 KTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA  212 (310)
T ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            3468899999998888888887777777888888875   3999999999999999999999999999    77777777


Q ss_pred             HHHHHHHHHHHHHHhhccc-hhh---hHhhhhhchhhhhHHHHHHhhCCC
Q 038282          117 IILLVSWIGHLLIAFNVPG-GLN---IMGFNFGAQWPLVFAITSEFFGPK  162 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~~~~~-~l~---l~G~~~G~~~~~~p~l~~~~fG~~  162 (234)
                      +...+.+++.++....... ..+   ++|++.+..++..-+...+.++.+
T Consensus       213 ~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~  262 (310)
T TIGR01272       213 FNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH  262 (310)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            7666666655444432222 122   889999999999888888888764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.29  E-value=8e-06  Score=73.17  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             cHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhh-----HHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           50 SMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRG-----ISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~-----aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      ++.+..+++..++...........++.+.++.|.+..+     .+.+.++..+...++.+++|+    +|||+.+....+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            44566667766665555444556788899999988654     367888888999999999998    799998888777


Q ss_pred             HHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Cccccccccc
Q 038282          121 VSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVEC  178 (234)
Q Consensus       121 ~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~  178 (234)
                      +.+++.+++....+.. ++    +.|++.+ ..+....++.+.+..++.++.              +   .+.+.+ ..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~  170 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-SYG  170 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence            7777766555433322 22    6676644 456666778888887776652              1   223222 346


Q ss_pred             cHHHHH-HHHHHHHHHHHHHHH
Q 038282          179 FKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       179 Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |+.+|+ .+.+.+++.++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        171 LRPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            888888 777777666655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.29  E-value=8.2e-06  Score=75.82  Aligned_cols=158  Identities=12%  Similarity=0.117  Sum_probs=102.9

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      ..+++|+|+.|++.+.+++.-+.........|.+.++ .++.........+..+...++|++.|+    +|+++++...+
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~  323 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINF  323 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHH
Confidence            5679999999998888877555544455577777766 344333333344456778999999999    78888888777


Q ss_pred             HHHHHHHHHHH--hhcc--c--hhh---------hHhhhhhchhhhhHHHHHH--hhCCC---------------CCCCC
Q 038282          120 LVSWIGHLLIA--FNVP--G--GLN---------IMGFNFGAQWPLVFAITSE--FFGPK---------------NHKEP  167 (234)
Q Consensus       120 ~~~~i~~~ll~--~~~~--~--~l~---------l~G~~~G~~~~~~p~l~~~--~fG~~---------------~~~~~  167 (234)
                      +...++.+.+.  .+..  .  ..+         ..|++.|+++-++|.+-.+  ....+               +.+..
T Consensus       324 i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v  403 (462)
T PRK15034        324 IFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAA  403 (462)
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHH
Confidence            76665543322  2211  1  111         5588888888888776542  11112               11110


Q ss_pred             ----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          168 ----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       168 ----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                                |       -|...+.+|+|...|+ ..++.+++..+.++...|
T Consensus       404 ~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        404 LGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                      1       3456778999999999 999988888888776443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.28  E-value=7.5e-06  Score=74.06  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=81.6

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      +....+.+.++.|.|+.+.+...++..++..++.+++|+    +|||+++....++.+++.++.....+.. ++    +.
T Consensus        37 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  116 (426)
T PRK12307         37 IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIV  116 (426)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345566777889999999999999999999999999999    8999999998888888776665544332 22    88


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      |++.|..++....++.|.+..++.++.
T Consensus       117 G~g~g~~~~~~~~~~~~~~~~~~r~~~  143 (426)
T PRK12307        117 GMGMAGEYACASTYAVESWPKHLKSKA  143 (426)
T ss_pred             HHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence            999999999999999999998887763

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.28  E-value=1.1e-05  Score=72.72  Aligned_cols=155  Identities=10%  Similarity=0.026  Sum_probs=98.8

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh----CCChhhHHHHHHHHHHhcccccccccc----cchHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL----GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLM  114 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~----G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~  114 (234)
                      +..+.+|++.+|.+.+..++............+.+.++.    +.+....+...++..+.+.++.+..|+    +|+|+.
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            467899999998766554443322222323445555443    556666788888888999999999998    788888


Q ss_pred             HHHHHHHHHHHHHHHHhhccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCcc
Q 038282          115 LTIILLVSWIGHLLIAFNVPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDL  171 (234)
Q Consensus       115 l~~~~~~~~i~~~ll~~~~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~  171 (234)
                      +.+..++.+++..+.....+... +    +.|++.+......-.+..+.++.+..++.                  ..|+
T Consensus       287 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~  366 (396)
T TIGR00882       287 LLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN  366 (396)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence            88777777776655444333222 2    55555544444444455666666654331                  2566


Q ss_pred             ccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          172 NCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      +.|.. +|+.+|+ .+.+.++.+++...
T Consensus       367 l~~~~-G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       367 MYDSI-GFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence            66654 5999999 88888877776543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.26  E-value=9.8e-06  Score=73.48  Aligned_cols=148  Identities=14%  Similarity=0.058  Sum_probs=105.9

Q ss_pred             HhccHHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHH
Q 038282           47 ALFSMDMLILFLATICGVGGTLLAIDNLRQI-GTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLV  121 (234)
Q Consensus        47 ~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~  121 (234)
                      .-|-++ |.++...++.......+...++.+ .++.|.|..+.+...+...+...+.++++|+    +|||+.+....++
T Consensus         7 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646          7 ARNLGK-YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            334455 444555555555555556666665 4678999999999999999999999999998    8999999988888


Q ss_pred             HHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Ccccccccccc
Q 038282          122 SWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECF  179 (234)
Q Consensus       122 ~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y  179 (234)
                      .+++.++.....+.. ++    +.|++.|...+...+++.+.++.++.++.              |   ++++.  ..+|
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~--~~g~  163 (400)
T PRK11646         86 RAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL--QYDF  163 (400)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhH
Confidence            888877766543332 22    77888877778888889999988887763              1   44443  3478


Q ss_pred             HHHHH-HHHHHHHHHHHHH
Q 038282          180 KLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       180 ~~~f~-~a~~~~va~~l~l  197 (234)
                      +..|+ .+...++++++..
T Consensus       164 ~~~f~~~~~~~~~~~i~~~  182 (400)
T PRK11646        164 RLVCATGAVLFVLAAAFNA  182 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            88898 7766666655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.26  E-value=4.5e-06  Score=76.01  Aligned_cols=143  Identities=11%  Similarity=0.059  Sum_probs=92.3

Q ss_pred             HhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh--CCChhhHHHHHHHHHHhcccccccccc----cchHHH-HHHHH
Q 038282           47 ALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL--GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLM-LTIIL  119 (234)
Q Consensus        47 ~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~--G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~-l~~~~  119 (234)
                      .++++.+|...+.+++.......+..++|++.++.  |.++.+++.+.++..++..+|++++|+    ++|++. +...+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       238 EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            35578899888877776666666778999999874  678888899999999999999999999    554543 34444


Q ss_pred             HHHHHHHHHHHhhccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccccccc
Q 038282          120 LVSWIGHLLIAFNVPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVE  177 (234)
Q Consensus       120 ~~~~i~~~ll~~~~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g  177 (234)
                      ++..+++.+......... +    +.+++.....+.......+.+++++.++.                 ..|.+.|..|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            444444333222111111 1    22223322333344444567887777642                 2556778889


Q ss_pred             ccHHHHH-HHHHH
Q 038282          178 CFKLSFI-MTAAT  189 (234)
Q Consensus       178 ~Y~~~f~-~a~~~  189 (234)
                      +|+..|. .+++.
T Consensus       398 ~~~~~~~~~~~~~  410 (412)
T TIGR02332       398 SFNSGLWFVAALL  410 (412)
T ss_pred             CCchhHHHHHHHH
Confidence            9999998 65543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.26  E-value=8.2e-06  Score=74.96  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc---------cc----hh--h--h
Q 038282           81 LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV---------PG----GL--N--I  139 (234)
Q Consensus        81 ~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~---------~~----~l--~--l  139 (234)
                      .|.++.+.+.+.++..++..+|.+++|+    +|||+.+.+..++.+++.++...+.         ..    .+  +  +
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            3888999999999999999999999999    8999999988888777655443310         11    11  2  8


Q ss_pred             HhhhhhchhhhhHHHHHHhhCCCCCCCC----------C-------Cccc-------cccccccHHHHH-HHHHHHHHHH
Q 038282          140 MGFNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLN-------CIGVECFKLSFI-MTAATLFSAF  194 (234)
Q Consensus       140 ~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~-------~d~~g~Y~~~f~-~a~~~~va~~  194 (234)
                      .|++.|+..+..+++++|++..++.+..          |       +...       .....+|+..|+ .+...++..+
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  209 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM  209 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999988863          1       0000       012347999998 7766666655


Q ss_pred             HHHHH
Q 038282          195 VSLIL  199 (234)
Q Consensus       195 l~l~l  199 (234)
                      +.+++
T Consensus       210 ~~~~l  214 (479)
T PRK10077        210 LLYFV  214 (479)
T ss_pred             HHHcC
Confidence            44443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.25  E-value=1.6e-05  Score=72.03  Aligned_cols=122  Identities=16%  Similarity=0.200  Sum_probs=97.2

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      ...+++|+|.++.-.+..|+..+....+-.+++.+..+ .|.++.+++..+|...++-.+||++.-+    +...+.+..
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf  307 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF  307 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            78899999999999999999999998888899999998 7999999999999999999999987777    555665555


Q ss_pred             HHHHHHHHHHHHHhhccc-hhh---hHhhhhhchhhhhHHHHHHhhCCCCCC
Q 038282          118 ILLVSWIGHLLIAFNVPG-GLN---IMGFNFGAQWPLVFAITSEFFGPKNHK  165 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~-~l~---l~G~~~G~~~~~~p~l~~~~fG~~~~~  165 (234)
                      ..++..+-++......+. .+|   +.|+..+..+|.+-++..+..| ++-.
T Consensus       308 ~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts  358 (422)
T COG0738         308 YALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTS  358 (422)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccc
Confidence            554444333333332232 234   8999999999999999999998 4443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.24  E-value=5.8e-06  Score=75.35  Aligned_cols=127  Identities=13%  Similarity=0.018  Sum_probs=95.1

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      ....++.+.++.|.+..+.+..++++.++..++.+++|+    +|||+++....++.+++.++.....+.. ++    +.
T Consensus        35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  114 (413)
T PRK15403         35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ  114 (413)
T ss_pred             hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345677788899999999999999999999999999998    8999999888888877776665544332 22    77


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l  197 (234)
                      |++.|...+....++.|.|+.++.++.              |   ++.+. ...+|+..|+ .+++.+++.++.+
T Consensus       115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~-~~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM-HFVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence            887776666677788899988776542              1   22222 2357999999 8877777765543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.24  E-value=1.5e-05  Score=71.80  Aligned_cols=141  Identities=13%  Similarity=-0.080  Sum_probs=91.8

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +.++.+|+|++|.+.+..++............+.+.+ +.|.++.+.+.......++..+|++++|+    +++++.+.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        207 DYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3467899999998777665544333333445566654 47999988888777777888999999998    678887777


Q ss_pred             HHHHHHHHHHHHHhhc---c-ch--hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCc
Q 038282          118 ILLVSWIGHLLIAFNV---P-GG--LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDD  170 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~---~-~~--l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g  170 (234)
                      ..++.+++.+++....   + ..  .+    ++|++.|...+.....+.... .++.++.                 ..+
T Consensus       287 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~  365 (406)
T PRK15402        287 GLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTVGIELSK  365 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666665554321   1 11  11    678888777665544443322 2444442                 166


Q ss_pred             cccccccccHHHHH
Q 038282          171 LNCIGVECFKLSFI  184 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~  184 (234)
                      ..++..+.|...+.
T Consensus       366 ~l~~~~~~~~~~~~  379 (406)
T PRK15402        366 HAYLGGGNGLFNLF  379 (406)
T ss_pred             hcccCCchHHHHHH
Confidence            77788887776665

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.22  E-value=1.3e-05  Score=73.73  Aligned_cols=165  Identities=11%  Similarity=0.024  Sum_probs=99.1

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHH---
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPL---  113 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~---  113 (234)
                      .+.++.++++.+|.+++..++.......+..++|.+.++ .|.+..+.+...++..++..+++++.|+    +++++   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~  331 (465)
T TIGR00894       252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS  331 (465)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            457899999999998888777666665566788888765 6999999999999999999999999999    22111   


Q ss_pred             ---HHHHHHHH--HHHHHHH--HHh-hccchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-------------
Q 038282          114 ---MLTIILLV--SWIGHLL--IAF-NVPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-------------  167 (234)
Q Consensus       114 ---~l~~~~~~--~~i~~~l--l~~-~~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-------------  167 (234)
                         ...+...+  ...+..+  ... ......    . +.+.+.+...+..-....+..+. +.+..             
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       332 LTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHH
Confidence               11111111  1111111  111 111111    1 33444444433333333444433 44321             


Q ss_pred             ----CCccccccc--cccHHHHH-HHHHHHHHHHHHHHHHhhhhhhh
Q 038282          168 ----EDDLNCIGV--ECFKLSFI-MTAATLFSAFVSLILVLMTRKFY  207 (234)
Q Consensus       168 ----g~g~~~d~~--g~Y~~~f~-~a~~~~va~~l~l~l~~~~~~~~  207 (234)
                          ..|.+.|..  ++|...|+ .++..+++.++.......++..|
T Consensus       411 i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w  457 (465)
T TIGR00894       411 IASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDW  457 (465)
T ss_pred             HHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecceecCC
Confidence                144444433  67999999 88888888877766555455555

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.22  E-value=2.1e-05  Score=71.85  Aligned_cols=158  Identities=17%  Similarity=0.133  Sum_probs=109.7

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhC-CChhhHHHHHHHHHHhcccccccccc----cchHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLG-YPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G-~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      .+..+++|+|++..+++..++....--......+.+.++.| .+....+.++++-.+..++-=+..++    +|.++++.
T Consensus       198 ~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~  277 (400)
T PF03825_consen  198 LDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLL  277 (400)
T ss_pred             hHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34568999999988776666554443334567778899987 77777788888888888888888887    67788888


Q ss_pred             HHHHHHHHHHHHHHhh-ccch-hh--------hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------C
Q 038282          117 IILLVSWIGHLLIAFN-VPGG-LN--------IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------E  168 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~~-~~~~-l~--------l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g  168 (234)
                      ++.+..++=..+.... ++.+ .+        +.|+++|..+.....++.+....+..++.                  .
T Consensus       278 ~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i  357 (400)
T PF03825_consen  278 LALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI  357 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence            8777777655555543 3322 11        47999999999999999999988877642                  2


Q ss_pred             Ccccccccc-----ccHHHHH-HHHHHHHHHHHHHHH
Q 038282          169 DDLNCIGVE-----CFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       169 ~g~~~d~~g-----~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      +|+++|..|     .|...+. .+++.++..++...+
T Consensus       358 gG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  358 GGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            777777543     2334444 555555555444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.21  E-value=1.2e-05  Score=75.06  Aligned_cols=157  Identities=9%  Similarity=0.033  Sum_probs=95.7

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHH-HHHHhcccccccccc----cchHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVS-LVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~s-i~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      +.++.++++.+|.+.+..++............+++.. +.|+|+.+.+.... +..++..+|.+++|+    +++++.+.
T Consensus       214 ~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~  293 (491)
T PRK11010        214 PLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM  293 (491)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4567888888887666555444343334455667654 57999999988875 445788999999999    67777666


Q ss_pred             HHHHHHHHHHHHH---Hhhccch--hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCc
Q 038282          117 IILLVSWIGHLLI---AFNVPGG--LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDD  170 (234)
Q Consensus       117 ~~~~~~~i~~~ll---~~~~~~~--l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g  170 (234)
                      +..++.+++.+++   ....+..  ++    +..++.|...+...++..++...+.-++.                 ..|
T Consensus       294 i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G  373 (491)
T PRK11010        294 IFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAG  373 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444433222   1211111  11    33333444444445555555555444431                 146


Q ss_pred             cccccccccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          171 LNCIGVECFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                      ++.|.. +|+..|. .+++++.+.++...++
T Consensus       374 ~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        374 WFVEAH-GWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHh-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655 5999998 8888888877776553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.21  E-value=9.8e-06  Score=75.30  Aligned_cols=118  Identities=15%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             hccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHH
Q 038282           48 LFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVS  122 (234)
Q Consensus        48 lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~  122 (234)
                      +-.+.+|.-+++++.+-..=.....-.+.+.+ +.|+|+.|.+.+.++..+...++|+..|+    +|.|+++.+..++.
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~  110 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            44456777666655443333333334555555 68999999999999999999999999999    78888888877777


Q ss_pred             HHHHHHHHhh-----ccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          123 WIGHLLIAFN-----VPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       123 ~i~~~ll~~~-----~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .+..++...+     .+.. ++    +.|++ |+.++.....+++.|..|+.++
T Consensus       111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~  163 (462)
T PRK15034        111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGS  163 (462)
T ss_pred             HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHH
Confidence            7766665543     2222 21    88887 7788888889999999888886

>PRK12382 putative transporter; Provisional

Probab=98.20  E-value=8.6e-06  Score=73.03  Aligned_cols=127  Identities=13%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchh-h----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGL-N----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l-~----l~  140 (234)
                      +..+.+.+.++.|.++  .+...+..+++..++++++|+    +|+++.+.....+.+++.+++....+... +    +.
T Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3445667777777764  455667778888999999998    67788777777777777665544322221 1    78


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |+++|...+.....+.+.+++++.++.                 ..|.+.|. .+|+..|+ .+++.+++.++.+..
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888888999998888763                 14455444 35999999 888887777666543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.18  E-value=2.6e-06  Score=77.15  Aligned_cols=154  Identities=16%  Similarity=0.083  Sum_probs=105.9

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      +...|++.|+.+++..++...........++.+.++.+.++.+.+.+.+...+...++.+++|+    +|||+.+.....
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~   90 (417)
T PRK10489         11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARG   90 (417)
T ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHH
Confidence            4455789999888776666555444455677788888889999999999999999999999998    789988777666


Q ss_pred             HHHHHHHHHHh----hcc-ch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Ccccc
Q 038282          121 VSWIGHLLIAF----NVP-GG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNC  173 (234)
Q Consensus       121 ~~~i~~~ll~~----~~~-~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~  173 (234)
                      +.+++.+.+..    ..+ .. ++    +.|++.|...+...+++.+.+..++.++.              |   ++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489         91 TCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            66555443321    111 12 22    66777777777777888899988777652              1   33333


Q ss_pred             ccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          174 IGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       174 d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      + ..+|++.|+ .+...+++.++.+.+
T Consensus       171 ~-~~~~~~~~~~~~~~~~~~~~~~~~l  196 (417)
T PRK10489        171 A-AGGVAWNYGLAAAGTFITLLPLLRL  196 (417)
T ss_pred             H-HHhhHHHHHHHHHHHHHHHHHHHhC
Confidence            3 346788888 666666555544433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.18  E-value=2.7e-05  Score=71.18  Aligned_cols=122  Identities=10%  Similarity=0.071  Sum_probs=78.9

Q ss_pred             HHHhccHHHHHHHHHH-HHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           45 LQALFSMDMLILFLAT-ICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      ++..++++.|...... ++.......+..+.+.+.++ .|++..++....++.++++.++++++|+    +|||+.+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~  310 (434)
T PRK15075        231 RSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAF  310 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            3445566666543322 22233333455678888876 6999998888888899999999999999    7888876655


Q ss_pred             HHHHHHHHH-HH-Hh-hccch--h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          119 LLVSWIGHL-LI-AF-NVPGG--L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       119 ~~~~~i~~~-ll-~~-~~~~~--l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .++..+... .+ .. ..+..  .   . +.+++.|...+...+++.|.+..+..++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~  367 (434)
T PRK15075        311 TVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTA  367 (434)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccch
Confidence            444332211 11 11 11111  1   1 5677888777777788899999887776

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.17  E-value=3.9e-05  Score=69.41  Aligned_cols=149  Identities=13%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhH-HHHHHhhCCChhhHHHHHHHHHHhcccccccccc-cch--HHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNL-RQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-FRR--PLMLTII  118 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~-~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr--~~~l~~~  118 (234)
                      ...+.+|+|.+|...+..++..........+. +.+.++.|++..+.+.+.+..++++.+|+++.|+ .+|  ++.+...
T Consensus       208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~  287 (394)
T PRK10213        208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGA  287 (394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            35688999999987665544444333344455 5566678999999999999999999999999998 222  2322332


Q ss_pred             HHH-HHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcccccc
Q 038282          119 LLV-SWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIG  175 (234)
Q Consensus       119 ~~~-~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~  175 (234)
                      ..+ .+.++++........ ++    +.|++++...+..++.+.+... ++.++.                 .+|.++|.
T Consensus       288 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        288 PLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222 222333322222222 21    7888998888888877777664 332221                 26677775


Q ss_pred             ccccHHHHH-HHHHHHHHH
Q 038282          176 VECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~  193 (234)
                      . +|...++ .+++.++..
T Consensus       367 ~-g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        367 I-GLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             c-ChhhHHHHHHHHHHHHH
Confidence            4 4666676 555444444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.17  E-value=1.4e-05  Score=74.16  Aligned_cols=115  Identities=7%  Similarity=-0.047  Sum_probs=73.5

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      +..+||+.|+.+++..++..............+.+....++...+.+.++.++...++.+++++    +|+|+.+.....
T Consensus       225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            3455888888777766655443333323333344443334455566777777888889899998    799998877766


Q ss_pred             HHHHHHHHHHh----hcc-chh-h----hHhhhhhchhhhhHHHHHHhh
Q 038282          121 VSWIGHLLIAF----NVP-GGL-N----IMGFNFGAQWPLVFAITSEFF  159 (234)
Q Consensus       121 ~~~i~~~ll~~----~~~-~~l-~----l~G~~~G~~~~~~p~l~~~~f  159 (234)
                      +.+++.+.+..    ... ..+ +    +.|++.+...+..+++++|..
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            65554433322    111 122 1    778999999999999999983

>PRK10054 putative transporter; Provisional

Probab=98.15  E-value=1.7e-05  Score=71.85  Aligned_cols=155  Identities=9%  Similarity=-0.043  Sum_probs=98.7

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHH---HhhCCChhhHHHHHHHHHHhcccccccccc----cchHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIG---TSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLM  114 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~---~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~  114 (234)
                      .+.++.+|++++|.+.+..++............+.+.   ++.+.+....+..+++.++.....+...|+    .++++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  276 (395)
T PRK10054        197 WSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL  276 (395)
T ss_pred             hhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence            3457889999999877766654443322222233333   445777777778888888888888877777    566777


Q ss_pred             HHHHHHHHHHHHHHHHhhc-cch-h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------------CCccc
Q 038282          115 LTIILLVSWIGHLLIAFNV-PGG-L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------------EDDLN  172 (234)
Q Consensus       115 l~~~~~~~~i~~~ll~~~~-~~~-l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------------g~g~~  172 (234)
                      +...+.+..+++.++.... +.. +  .  ++|++.+...+.....+.+.-..+..++.                .+|.+
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l  356 (395)
T PRK10054        277 MTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVI  356 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHH
Confidence            7777777777665554422 222 2  1  77777777677766677676666555543                26667


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHH
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l  197 (234)
                      +|.. +|...|. .+.+..++.++.+
T Consensus       357 ~~~~-g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        357 LTTL-PPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHc-ChhhHHHHHHHHHHHHHHHHH
Confidence            7766 6667777 6666666665554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.15  E-value=1.5e-05  Score=74.30  Aligned_cols=132  Identities=11%  Similarity=0.023  Sum_probs=98.5

Q ss_pred             HHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh---
Q 038282           67 TLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN---  138 (234)
Q Consensus        67 ~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~---  138 (234)
                      ...+...+|++.++.|.+..+.+++.+.+.++..++.+.+|+    +|||+.+....++..++.++...+.+.. ++   
T Consensus        22 ~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r  101 (495)
T PRK14995         22 ATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATR  101 (495)
T ss_pred             HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            333455688999999999999999999999999999999998    8999999999988888877766544332 22   


Q ss_pred             -hHhhhhhchhhhhHHHHHHhh-CCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          139 -IMGFNFGAQWPLVFAITSEFF-GPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       139 -l~G~~~G~~~~~~p~l~~~~f-G~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                       +.|++.|...+.....+.+.+ ..++.++.              |   ++.+.+ ..+|++.|+ ...++++..++...
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~-~~gwr~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE-HFYWGSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHH
Confidence             789998888877777777776 55655542              1   344333 457999999 77777766655544


Q ss_pred             H
Q 038282          199 L  199 (234)
Q Consensus       199 l  199 (234)
                      .
T Consensus       181 ~  181 (495)
T PRK14995        181 Y  181 (495)
T ss_pred             h
Confidence            3

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.15  E-value=1.6e-05  Score=72.16  Aligned_cols=116  Identities=20%  Similarity=0.130  Sum_probs=79.8

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      .++.+|+|.||.+.+..++............+.+.+. .| ++.+.+.+.++..+...++.+++|+    +|+++.+...
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            4677899999987776665544433322223334443 24 4556677777888999999999998    7888888887


Q ss_pred             HHHHHHHHHHHHhhcc-chh----h-hHhhhhhchhhhhHHHHHHhhC
Q 038282          119 LLVSWIGHLLIAFNVP-GGL----N-IMGFNFGAQWPLVFAITSEFFG  160 (234)
Q Consensus       119 ~~~~~i~~~ll~~~~~-~~l----~-l~G~~~G~~~~~~p~l~~~~fG  160 (234)
                      .++.+++.+++..... ...    . +.|++.|...+...++++|..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  341 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVD  341 (437)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            7777777665554222 121    1 7788999999999999888754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.15  E-value=3.9e-05  Score=71.33  Aligned_cols=129  Identities=14%  Similarity=0.129  Sum_probs=89.7

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      ....++++.++.|+|..+.+.+.+...++..++.++.|+    +|||+++....++.+++.++.....+.. ++    +.
T Consensus        55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~  134 (476)
T PLN00028         55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFI  134 (476)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344567788889999999999888898999999999999    7999888877777776665555433322 22    67


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC----------CC-------cccc--------ccccccHHHHH-HHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP----------ED-------DLNC--------IGVECFKLSFI-MTAATLFSAF  194 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g~-------g~~~--------d~~g~Y~~~f~-~a~~~~va~~  194 (234)
                      |++.+... .....++++|..++.+..          |.       ..+.        +...+|+.+|+ .+++.++.++
T Consensus       135 G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l  213 (476)
T PLN00028        135 GFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI  213 (476)
T ss_pred             HHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence            77777543 344567899988877752          10       1111        11237999999 8887777666


Q ss_pred             HHHHH
Q 038282          195 VSLIL  199 (234)
Q Consensus       195 l~l~l  199 (234)
                      +.+.+
T Consensus       214 ~~~~~  218 (476)
T PLN00028        214 LVLTL  218 (476)
T ss_pred             HHHHH
Confidence            65554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.13  E-value=6.2e-06  Score=72.03  Aligned_cols=123  Identities=16%  Similarity=0.107  Sum_probs=90.8

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHH-hhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAI-DNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .++.+|+|.+|.+.+..++......... ...+.+.++ .|.++.+.+.+.+..+++..+++++.|+    .+|++.+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  282 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTG  282 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            4567899999987776665554444444 556677776 6999999999999999999999999998    677777776


Q ss_pred             HHHHHHHHHHHHHhhcc-chh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          118 ILLVSWIGHLLIAFNVP-GGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~-~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ...+.+++++++....+ ...    . +.|++.+...+...+++.|.++.++.++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  337 (365)
T TIGR00900       283 AIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGR  337 (365)
T ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            66666666655544332 221    1 8899999998999999999988776554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.12  E-value=3.9e-05  Score=71.80  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTIILLVSWI  124 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~~~~~~~i  124 (234)
                      +.+|.++...++.....+.+...++.+.+ +.|.++.+++++.+.+.+...+.-++.|+     +|||+++....++.++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            45777776666666666666666777665 57999999998888888777777788888     6999999999999998


Q ss_pred             HHHHHHhhcc-ch-hh----hHhhhhhchhhhhHHHHHHhhCCCCC--CCC--------------C---Ccccccccccc
Q 038282          125 GHLLIAFNVP-GG-LN----IMGFNFGAQWPLVFAITSEFFGPKNH--KEP--------------E---DDLNCIGVECF  179 (234)
Q Consensus       125 ~~~ll~~~~~-~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~--~~~--------------g---~g~~~d~~g~Y  179 (234)
                      +.+++..+.. .. ++    +.|++.|...+..+++++|.|..++.  ++.              |   .+++.+. .+|
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-~gw  172 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-FGY  172 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-hCh
Confidence            8877665432 22 22    88999999999999999999976642  221              1   4444333 369


Q ss_pred             HHHHH-HHHHHHHHHHHH
Q 038282          180 KLSFI-MTAATLFSAFVS  196 (234)
Q Consensus       180 ~~~f~-~a~~~~va~~l~  196 (234)
                      +..|+ .++...++.+..
T Consensus       173 ~~~F~i~~i~~~~~~~~~  190 (489)
T PRK10207        173 SVTYNLCGAGLIIALLVY  190 (489)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            99998 655444444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.11  E-value=2e-05  Score=80.35  Aligned_cols=154  Identities=15%  Similarity=0.045  Sum_probs=103.8

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-c---chHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-F---RRPLMLTII  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-~---gr~~~l~~~  118 (234)
                      ++.+.+++.+|.+.+.+++.......+..+++.+.++ .|.++.+++.+.+..+++.++|.++.|+ .   .+++.+...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHH
Confidence            5677899999998887766655555556678888877 5999999999999999999999999999 2   222333322


Q ss_pred             HHHHHHHHHHHHhh--------------------ccchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC------
Q 038282          119 LLVSWIGHLLIAFN--------------------VPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP------  167 (234)
Q Consensus       119 ~~~~~i~~~ll~~~--------------------~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------  167 (234)
                      .++.+++.+.+...                    .+.+.    + ++|++.|...+...+++.+.+..++.+++      
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~  377 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNV  377 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHH
Confidence            22222222211110                    11111    1 78888898888899999999999999985      


Q ss_pred             -----------CCccccccccccHHHHH-HHHHHHHHHHHHH
Q 038282          168 -----------EDDLNCIGVECFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       168 -----------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l  197 (234)
                                 ..+.+.+...++...|+ .+.+.++.+++.+
T Consensus       378 ~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (1140)
T PRK06814        378 LNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILIL  419 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence                       13344445567777777 5555455444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.10  E-value=1.8e-05  Score=73.04  Aligned_cols=126  Identities=12%  Similarity=0.131  Sum_probs=90.6

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh-----hHh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN-----IMG  141 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~-----l~G  141 (234)
                      ...+++.++.|.+..+.+...++..++..++.+++|+    +|||+++....++.+++.++.....+.. ++     +.|
T Consensus        40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G  119 (455)
T TIGR00892        40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITG  119 (455)
T ss_pred             hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4577888899999999999999999888999999999    8999988888877777766655433322 22     557


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      ++.|...+....++.++|. ++.++.          +       .+.+.+ ..+|+.+|+ .+++.+++.++.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-SFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHh
Confidence            8888766666677889995 454442          0       223333 347999999 887777666555444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.09  E-value=2.5e-05  Score=68.83  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=66.9

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +..+.+++|++|.+.+..++.......+..+.+.+.++ .|.++.+++.+.++..+.+.++++++|+    +|+++.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  296 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLM  296 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence            45778999999988877666555555566678888876 5999999999999999999999999999    677776666


Q ss_pred             HHHHHHHHHHHHH
Q 038282          118 ILLVSWIGHLLIA  130 (234)
Q Consensus       118 ~~~~~~i~~~ll~  130 (234)
                      .+....++..++.
T Consensus       297 ~~~~~~~~~~~~~  309 (366)
T TIGR00886       297 SFLGVAMGAFLVV  309 (366)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444443

>PRK12382 putative transporter; Provisional

Probab=98.08  E-value=3.6e-05  Score=68.96  Aligned_cols=121  Identities=16%  Similarity=0.131  Sum_probs=86.5

Q ss_pred             HhccHHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHH
Q 038282           47 ALFSMDMLILFLATICGVGGTLLAIDNLRQI-GTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLV  121 (234)
Q Consensus        47 ~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~  121 (234)
                      ...++.+|.+++..++......+....++.+ .++.|.|+.+.+.+.+...+...++.+++|+    +|||+.+....+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~   90 (392)
T PRK12382         11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLA   90 (392)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHH
Confidence            4455667777766665544433445566654 4678999999999999999999999999999    8999988877666


Q ss_pred             HHHHHHHH---Hh-hc----cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          122 SWIGHLLI---AF-NV----PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       122 ~~i~~~ll---~~-~~----~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      ..++.+..   .. ..    +.. ++    +.|++.+...+...+.+.|.+..|+.++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a  149 (392)
T PRK12382         91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKV  149 (392)
T ss_pred             HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchh
Confidence            55443221   11 10    111 12    78888888888788888999998888874

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.08  E-value=1.6e-05  Score=71.16  Aligned_cols=117  Identities=12%  Similarity=0.026  Sum_probs=90.1

Q ss_pred             cHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHH
Q 038282           50 SMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIG  125 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~  125 (234)
                      ++.+|.++...++...........++.+.++.|.|+.+.+.+.+...++..++.+++|+    +|||+.+....++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45577777777665555444567789999999999999999999999999999999999    89999988888888777


Q ss_pred             HHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          126 HLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       126 ~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .++.....+.. ++    +.|++.|...+...+.+.+....++.++
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  130 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGR  130 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            76655543322 22    7788888888777777777776666554

>TIGR00897 2A0118 polyol permease family

Probab=98.06  E-value=2.4e-05  Score=70.80  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHH
Q 038282           53 MLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLL  128 (234)
Q Consensus        53 F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~l  128 (234)
                      ++..+++.++...........++++.++.|.|+.+.+.+.++.+++..++.+++|+    +|||+.+....++.+++.++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~   94 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA   94 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            44455555555544444556788888999999999999999999999999999998    89999998888887776543


Q ss_pred             HH-hh--cc-ch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          129 IA-FN--VP-GG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       129 l~-~~--~~-~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      .. ..  .+ .. ++    +.|++.+...+...+.+.+.+..++.++.
T Consensus        95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~  142 (402)
T TIGR00897        95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSA  142 (402)
T ss_pred             HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHH
Confidence            32 11  11 11 12    66888777777777778888888887763

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.05  E-value=6.5e-05  Score=69.39  Aligned_cols=127  Identities=15%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh-----ccch-hh----
Q 038282           73 NLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN-----VPGG-LN----  138 (234)
Q Consensus        73 ~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~-----~~~~-l~----  138 (234)
                      ..+++.++.|+++.+.+++.+...++..++.+++|+    +|||+++....++.+++.+++...     .+.. ++    
T Consensus        51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  130 (467)
T PRK09556         51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWA  130 (467)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            467788899999999999999999999999999999    899998887776666554443321     1211 21    


Q ss_pred             hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C---C----ccccc--cccccHHHHH-HHHHHHHHHHHHHH
Q 038282          139 IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E---D----DLNCI--GVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~----g~~~d--~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      +.|++.|..++....++++.|..++.++.          |   +    .+...  ..++++..|. .+.+.++.+++.+.
T Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        131 LSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             HHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999988863          1   1    11111  1235777777 66666655555444


Q ss_pred             H
Q 038282          199 L  199 (234)
Q Consensus       199 l  199 (234)
                      +
T Consensus       211 ~  211 (467)
T PRK09556        211 Y  211 (467)
T ss_pred             h
Confidence            3

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.05  E-value=7e-05  Score=70.25  Aligned_cols=146  Identities=14%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----c-chHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----F-RRPLMLTIILLVSWI  124 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~-gr~~~l~~~~~~~~i  124 (234)
                      +.+|.++...+......+.+...++.+.++ .|+++.+++.+.+...+...++.++.|+    + |||+++.+..++..+
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            456766666666556666666677877665 6999999999999999999999999999    5 999999998888888


Q ss_pred             HHHHHHhhcc--chhh----hHhhhhhchhhhhHHHHHHhhCCCC--CCCC----------C-------Ccccccccccc
Q 038282          125 GHLLIAFNVP--GGLN----IMGFNFGAQWPLVFAITSEFFGPKN--HKEP----------E-------DDLNCIGVECF  179 (234)
Q Consensus       125 ~~~ll~~~~~--~~l~----l~G~~~G~~~~~~p~l~~~~fG~~~--~~~~----------g-------~g~~~d~~g~Y  179 (234)
                      +.+++.....  ..++    +..++.|...+..+++++|.|..++  ..+.          |       .+++. ...+|
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~-~~~Gw  167 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ-EEYSW  167 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH-hhhCh
Confidence            8766654221  1122    5567778888888999999998652  3221          1       23322 23469


Q ss_pred             HHHHH-HHHHHHHHHHHHH
Q 038282          180 KLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       180 ~~~f~-~a~~~~va~~l~l  197 (234)
                      +..|. ++...+++.+..+
T Consensus       168 ~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        168 AMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            99998 6665555554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.05  E-value=4.7e-05  Score=68.32  Aligned_cols=117  Identities=14%  Similarity=0.023  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHH-HhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIG-TSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIG  125 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~-~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~  125 (234)
                      +.+..+.+..+.......+....++.+. ++.|.|+.+.+.+.+...+...++.+++|+    +|||+++....++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            3455556655555555444555677654 567999999999999999999999999999    89999999888777655


Q ss_pred             HHHHHh---hcc-----c-hhh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          126 HLLIAF---NVP-----G-GLN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       126 ~~ll~~---~~~-----~-~l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      ......   ...     . .++    +.|++.+...+....++.+.+..|+.++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  149 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRV  149 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccc
Confidence            433322   111     1 111    88899998888888888999988888764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.04  E-value=2.1e-05  Score=71.96  Aligned_cols=157  Identities=11%  Similarity=0.032  Sum_probs=105.3

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh----CCChhhHHHHHHHHHHhcccccccccc----cchHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL----GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT  116 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~----G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~  116 (234)
                      .+.+|+|+||.+.+............-.+.+.+.++.    +.++...+.++|+--+.++..-.+..+    +|.|+.+.
T Consensus       214 ~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll  293 (412)
T PF01306_consen  214 LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL  293 (412)
T ss_dssp             HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence            4788999999866544333333332323455555544    445556677888888888888888887    78899998


Q ss_pred             HHHHHHHHHHHHHHhhccchh---h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCcccc
Q 038282          117 IILLVSWIGHLLIAFNVPGGL---N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLNC  173 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~~~~~~l---~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~~  173 (234)
                      ++.+++.+=+.+....++...   .  +.|+-.+......--++.+.|+.|-.++.                  .+|.+|
T Consensus       294 lag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly  373 (412)
T PF01306_consen  294 LAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY  373 (412)
T ss_dssp             HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence            888887776666555444332   1  88888888888888899999998876542                  277777


Q ss_pred             ccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          174 IGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       174 d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      |.. +|+.+|+ ++++.+...++..+..++
T Consensus       374 d~~-G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  374 DRI-GFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             hhc-CcHHHHHHHHHHHHHHHHHheeeecC
Confidence            776 6778888 888877777777665443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.03  E-value=9.9e-05  Score=66.49  Aligned_cols=151  Identities=15%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc-cchH---HH-HHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-FRRP---LM-LTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr~---~~-l~~  117 (234)
                      ..++.+|+|.+|.+.+..++.....+.+..+++++.++.|++.. ++...++..+...+|....+. .+|+   +. ...
T Consensus       184 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~  262 (368)
T TIGR00903       184 EFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRA  262 (368)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHH
Confidence            35789999999999998888777777777889999988888864 556566666555555432222 3433   22 222


Q ss_pred             HHHHHHHHHHHHHhhccch-h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C-------Ccccccc
Q 038282          118 ILLVSWIGHLLIAFNVPGG-L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIG  175 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~-l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~  175 (234)
                      ..++.++.+.++....+.. .  .  +.+++.+..++...++.+|.|.++..++.          +       .+...  
T Consensus       263 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~--  340 (368)
T TIGR00903       263 AALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI--  340 (368)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh--
Confidence            3333333333333222221 1  1  56777777778788899999999998874          0       11111  


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHH
Q 038282          176 VECFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l  197 (234)
                       .+....|. .++..+++++..+
T Consensus       341 -~~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       341 -SSAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHH
Confidence             26778888 7777777776653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.03  E-value=3.8e-05  Score=70.53  Aligned_cols=130  Identities=16%  Similarity=0.090  Sum_probs=86.3

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh--cc-ch-h--h---
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN--VP-GG-L--N---  138 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~--~~-~~-l--~---  138 (234)
                      .+.+.+.++.|.+...+.......++.+.++.++.|+    +|||+.+....++.+++.+++...  .. .. .  +   
T Consensus       292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~  371 (479)
T PRK10077        292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML  371 (479)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            3456777788998877778888888999999999998    788998888888887776665432  11 11 1  1   


Q ss_pred             hHhhhhhch-hhhhHHHHHHhhCCCCCCCC----------C-------------CccccccccccHHHHH-HHHHHHHHH
Q 038282          139 IMGFNFGAQ-WPLVFAITSEFFGPKNHKEP----------E-------------DDLNCIGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       139 l~G~~~G~~-~~~~p~l~~~~fG~~~~~~~----------g-------------~g~~~d~~g~Y~~~f~-~a~~~~va~  193 (234)
                      +++++++.. .++...+++|.|+.++.++.          +             .++..|. .++...|+ .++.+++++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  450 (479)
T PRK10077        372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH-FHNGFSYWIYGCMGVLAA  450 (479)
T ss_pred             HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh-ccCccHHHHHHHHHHHHH
Confidence            444444433 36678899999998887753          0             1222222 33456777 777777776


Q ss_pred             HHHHHHHhh
Q 038282          194 FVSLILVLM  202 (234)
Q Consensus       194 ~l~l~l~~~  202 (234)
                      ++.+.+..+
T Consensus       451 ~~~~~~~~e  459 (479)
T PRK10077        451 LFMWKFVPE  459 (479)
T ss_pred             HHHHhcccc
Confidence            666554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.03  E-value=3.4e-05  Score=68.19  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=90.5

Q ss_pred             CHHHHhccHH---HHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHH-Hhcccccccccc----cchHHH
Q 038282           43 TILQALFSMD---MLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVN-IWNCLGRVVSGF----FRRPLM  114 (234)
Q Consensus        43 ~~~~~lk~~~---F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~-i~~~vGRl~~G~----~gr~~~  114 (234)
                      +.++.+|++.   +|.+.+..++..........+.+++.++.|+++.+.+.+.++.+ +...+|.+++|+    +||++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  277 (356)
T TIGR00901       198 PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA  277 (356)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3456677775   77666665555555555667888898889999999988888777 567899999998    788887


Q ss_pred             HHHHHHHHHHHHHHHHhh--c--------c-ch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          115 LTIILLVSWIGHLLIAFN--V--------P-GG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       115 l~~~~~~~~i~~~ll~~~--~--------~-~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      +....++.+++..++...  .        + .. ++    +.+++.|...+...+++.+.+.+++.++
T Consensus       278 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~  345 (356)
T TIGR00901       278 LLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGAT  345 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHH
Confidence            777776666655443321  1        1 12 11    6689999999999999999999888765

>TIGR00898 2A0119 cation transport protein

Probab=98.01  E-value=2e-05  Score=73.17  Aligned_cols=158  Identities=15%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .+.++++|+|.++...+...+...........+.....+.+.+...   ...+.++...+++++.++    +|||+.+.+
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~  390 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTMAA  390 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5778999999998876655443333222222233334445655433   333556777888888888    799999988


Q ss_pred             HHHHHHHHHHHHHhhccc--hh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C---Ccccc-ccc
Q 038282          118 ILLVSWIGHLLIAFNVPG--GL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E---DDLNC-IGV  176 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~--~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~g~~~-d~~  176 (234)
                      ..++.+++++++......  ..    . +.+++.+..+++...+++|+|+++..++.          |   +..+. ...
T Consensus       391 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~  470 (505)
T TIGR00898       391 SLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGE  470 (505)
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHH
Confidence            888888777666553222  21    1 66677777888888999999998877753          1   11111 112


Q ss_pred             cccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          177 ECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       177 g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      .++..+++ .+++.+++.++.++++.+
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       471 KWLFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            23445666 777777777777666543

>PRK10504 putative transporter; Provisional

Probab=97.99  E-value=0.00016  Score=66.56  Aligned_cols=122  Identities=11%  Similarity=0.004  Sum_probs=88.7

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      .+.+||+.|+..++..++............+.+.+. .|.++.+++..+....++..++++++|+    +|+++.+....
T Consensus       255 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~  334 (471)
T PRK10504        255 LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT  334 (471)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            468999999987776666554433333455666664 7999999999998888989999899998    78888888777


Q ss_pred             HHHHHHHHHHHhhc-cch---h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          120 LVSWIGHLLIAFNV-PGG---L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       120 ~~~~i~~~ll~~~~-~~~---l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .+.+++.+++.... ...   .   + +.|++.|..++....++.+.+..+..+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  389 (471)
T PRK10504        335 LGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASS  389 (471)
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccc
Confidence            76666655544422 111   1   2 6678888888888888888888887775

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.99  E-value=0.00011  Score=66.35  Aligned_cols=128  Identities=8%  Similarity=0.049  Sum_probs=84.3

Q ss_pred             HHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch--h-h--h
Q 038282           70 AIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG--L-N--I  139 (234)
Q Consensus        70 ~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~--l-~--l  139 (234)
                      ...+.+.+.++ .|+++.+++.+.++..+...++++++|+    ++||+.+........+.+..+.......  + .  +
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33467777654 6999988888888888888899999999    7888766655444444433333222221  1 1  5


Q ss_pred             HhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          140 MGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       140 ~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      .+++.|...+..+....|.+..+ .++.                 ..|.+.|.. +|+..|+ .+++++++.++.+.+
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhh
Confidence            56677777777778888888743 4532                 145565543 6888888 777777777666544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.99  E-value=6.2e-05  Score=70.20  Aligned_cols=85  Identities=21%  Similarity=0.276  Sum_probs=69.0

Q ss_pred             CCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhcc------ch-hh----hHhhhhhc
Q 038282           82 GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVP------GG-LN----IMGFNFGA  146 (234)
Q Consensus        82 G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~------~~-l~----l~G~~~G~  146 (234)
                      ..++.+.+.+.+...++..+|.+++|+    +|||+++....++..++..+......      .. ++    +.|++.|.
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  131 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG  131 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence            345667788999999999999999999    89999998888887777655544321      11 21    88999999


Q ss_pred             hhhhhHHHHHHhhCCCCCCC
Q 038282          147 QWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       147 ~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ..+..+.+++|.+..++.++
T Consensus       132 ~~~~~~~~~~e~~p~~~Rg~  151 (502)
T TIGR00887       132 DYPLSAIITSEFATKKWRGA  151 (502)
T ss_pred             hhHHHHHHHHHhcChhhHHH
Confidence            99999999999999999986

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.98  E-value=7.9e-06  Score=73.73  Aligned_cols=129  Identities=16%  Similarity=0.069  Sum_probs=86.6

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHh---h-cc------c
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAF---N-VP------G  135 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~---~-~~------~  135 (234)
                      +..+.+.+.++.|++..+++...++..+++.+++++.|+    ++||+.+...+++.+++.+++..   . ..      .
T Consensus       303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            345667777888999988889999999999999999998    78888888777777666555541   1 11      1


Q ss_pred             h--hh---hHhhhhhc-hhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHH
Q 038282          136 G--LN---IMGFNFGA-QWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLF  191 (234)
Q Consensus       136 ~--l~---l~G~~~G~-~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~v  191 (234)
                      .  +.   +++.+++. ..++...++.|.++.++.++.                 ..+.+.+. .+|...|+ .++++++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~f~~~~~~~~~  461 (481)
T TIGR00879       383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-IGVGGVFIFFGGLNVL  461 (481)
T ss_pred             HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccceehhHHHHHHH
Confidence            1  11   33333333 335555667899998877652                 13333333 34778888 8888887


Q ss_pred             HHHHHHHH
Q 038282          192 SAFVSLIL  199 (234)
Q Consensus       192 a~~l~l~l  199 (234)
                      ++++.+..
T Consensus       462 ~~i~~~~~  469 (481)
T TIGR00879       462 GLIFVYFF  469 (481)
T ss_pred             HHHHHhee
Confidence            77776554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=97.97  E-value=9.3e-06  Score=75.34  Aligned_cols=127  Identities=19%  Similarity=0.221  Sum_probs=94.9

Q ss_pred             hHHHHHHhhCCC---hhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchh---h--hH
Q 038282           73 NLRQIGTSLGYP---KRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGL---N--IM  140 (234)
Q Consensus        73 ~~~~~~~~~G~s---~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l---~--l~  140 (234)
                      ..+.+.+|.+++   +.+.+.+.++..++..+|.+++|+    +|||+++.+..++.+++.++...+.+...   .  +.
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  190 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV  190 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            345667788998   888999999999999999999999    89999998888888777766655433322   1  88


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC----------C---CccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP----------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |++.|+..+...+++.|+++.++.+..          |   ...+.....+|+..|+ .+...++..++.+++
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999888753          1   0111001123888888 777666666555444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.97  E-value=5.8e-06  Score=76.05  Aligned_cols=120  Identities=12%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc--cch-hh----hHhhhhhchh
Q 038282           80 SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV--PGG-LN----IMGFNFGAQW  148 (234)
Q Consensus        80 ~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~--~~~-l~----l~G~~~G~~~  148 (234)
                      +.++++.+.+.+.+...++..++.+..|+    +|||+.+....++.+++.++...+.  ... ++    +.|++.|..+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            56899999999999999999999999998    8999988888877776665543321  122 22    8899999999


Q ss_pred             hhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          149 PLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       149 ~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      +....++++.+..++.++.                 ..+.+.+...+|+.+|+ .+...++..++.+..
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            9999999999998887753                 13344443357899999 777666555554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.93  E-value=0.00013  Score=63.98  Aligned_cols=123  Identities=15%  Similarity=0.098  Sum_probs=79.4

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-cc----hHHHHH-
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-FR----RPLMLT-  116 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-~g----r~~~l~-  116 (234)
                      .++.+|+|.+|.+.+..++.......+....+.+.++ .|.++.+++...++.++++.+|+++.|+ .+    +++... 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~  288 (379)
T TIGR00881       209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA  288 (379)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH
Confidence            4567899999988877766655555556677777765 6999999999999999999999999999 22    222222 


Q ss_pred             HH-HHHHHHHHHHHHhh-ccch-h---h--hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          117 II-LLVSWIGHLLIAFN-VPGG-L---N--IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       117 ~~-~~~~~i~~~ll~~~-~~~~-l---~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .. .....+++..+... .... .   .  +.|+..++.......+..|.++.++.++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  346 (379)
T TIGR00881       289 VFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGT  346 (379)
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHH
Confidence            21 11222222222221 1111 1   1  5565555556666778889998887765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.93  E-value=7.8e-05  Score=68.06  Aligned_cols=115  Identities=7%  Similarity=-0.121  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      .++.++..+++............+.+.++.|.|+.+.+.+.+...++..++.+..|+    +|||+++...+++.+++.+
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            456655554443333222335667777788999999999999999999999999998    8999999999999888877


Q ss_pred             HHHhhc---cchhh-----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          128 LIAFNV---PGGLN-----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       128 ll~~~~---~~~l~-----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      +.....   +...+     +.|++.|...+...+++.+....++.++
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~  130 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATR  130 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHH
Confidence            654321   22221     8899999999998888888876666553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.93  E-value=7.6e-05  Score=71.35  Aligned_cols=154  Identities=16%  Similarity=0.079  Sum_probs=108.3

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhH----HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLLA----IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~----~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      ...++++|+..+.++.+.....+..    ..-++.+.+|.|-++ ..+++.+...+.+.++-++.|.    +|||+.++.
T Consensus        35 g~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~  113 (599)
T PF06609_consen   35 GYYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFII  113 (599)
T ss_pred             CceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Confidence            3557888888776665544333222    234667788888875 4567777888888999999998    899999999


Q ss_pred             HHHHHHHHHHHHHhhccchhh-----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------C-Cccc---cccc
Q 038282          118 ILLVSWIGHLLIAFNVPGGLN-----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------E-DDLN---CIGV  176 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~l~-----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------g-~g~~---~d~~  176 (234)
                      ..++..+|..+...+.+...+     ++|++.|..... ...++|+...|+..-.            . ++..   ....
T Consensus       114 g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  114 GSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             HHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence            999999999887765443222     889998888754 5558999987776531            1 1111   2235


Q ss_pred             cccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          177 ECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       177 g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ++||+.|+ .+....+++++.++...
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhC
Confidence            78999999 88888887766655433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.90  E-value=4.5e-05  Score=67.77  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             HhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHH-Hhhccchh-h----h
Q 038282           71 IDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLI-AFNVPGGL-N----I  139 (234)
Q Consensus        71 ~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll-~~~~~~~l-~----l  139 (234)
                      ....+.+.+ +.|.+..+.+.+.++.+++..+|+++.|+    ++|++.+....++.++....+ ....+... .    +
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            345666665 46999999999999999999999999999    688887776665543332222 22122221 1    5


Q ss_pred             HhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH
Q 038282          140 MGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI  184 (234)
Q Consensus       140 ~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~  184 (234)
                      .+++.++..++.++++.|.++.++.++.                 ..|.+.|..|+|+.++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~  399 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA  399 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence            6677777888899999999998888763                 15566777777877665

>TIGR00895 2A0115 benzoate transport

Probab=97.90  E-value=8.2e-05  Score=65.69  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      .++.+++..++............+.+.++.|.++.+++...++.+++..++++++|+    ++|+..+....+....+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            344444444444444434445667777788999999999999999999999999999    6777433333332322222


Q ss_pred             HHHhhccch-h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          128 LIAFNVPGG-L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       128 ll~~~~~~~-l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      +.....+.. .  .  +.|++.+...+...+++.|.++.++.++
T Consensus       331 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  374 (398)
T TIGR00895       331 VGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRAT  374 (398)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            222112211 2  1  8899999999999999999988776654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.88  E-value=0.00012  Score=74.54  Aligned_cols=124  Identities=12%  Similarity=0.018  Sum_probs=89.2

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChh-hHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKR-GISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~-~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +++.++++.+|.+.+..++...........++.+.++ .|.+.. +.+.+.++.+++.++|.+++|+    +++++.+.+
T Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~  304 (1146)
T PRK08633        225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPL  304 (1146)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhH
Confidence            4567888888887766655554444455566777655 699988 8999999999999999999999    455555656


Q ss_pred             HHHHHHHHHHHHHhhccch-h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          118 ILLVSWIGHLLIAFNVPGG-L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~-l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      ..++.+++++++....+.. +   . ++|++.|...+...+++.+.+..++.++.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~  359 (1146)
T PRK08633        305 GALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKV  359 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhh
Confidence            6656655555554422221 1   1 78888888888888888999988888864

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.87  E-value=0.00013  Score=64.63  Aligned_cols=81  Identities=12%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      .++.+|++++|...+..++............+.+.. ..|.++.+.+...++.+++..+++++.|+    +|||+.+...
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~  266 (377)
T PRK11102        187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFG  266 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            456888999887666554443333333344444444 46999999999999999999999999999    7888887776


Q ss_pred             HHHHHH
Q 038282          119 LLVSWI  124 (234)
Q Consensus       119 ~~~~~i  124 (234)
                      ..+..+
T Consensus       267 ~~~~~~  272 (377)
T PRK11102        267 LWIQFI  272 (377)
T ss_pred             HHHHHH
Confidence            655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.87  E-value=0.00017  Score=64.69  Aligned_cols=89  Identities=11%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      ..++.+|++++|...+...+............+.+.+ +.|.++.+.+.+.+..++...+++++.|+    +||++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~  274 (392)
T PRK10473        195 ENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT  274 (392)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3467899999987665554443333333333344444 56999999999999999999999999998    788888888


Q ss_pred             HHHHHHHHHHHHHh
Q 038282          118 ILLVSWIGHLLIAF  131 (234)
Q Consensus       118 ~~~~~~i~~~ll~~  131 (234)
                      .+++..++.+++..
T Consensus       275 ~~~~~~~~~~~~~~  288 (392)
T PRK10473        275 SQVLFLAAGITLAL  288 (392)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766665554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.86  E-value=0.00019  Score=63.44  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=85.3

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +.++.+|++++|.+.+...+............+.+.+ +.|.++.+.+.+.+..+++..+++++.|+    +++++.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  277 (385)
T TIGR00710       198 TFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM  277 (385)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3567889999998766555444433334444555555 57999999999999999999999999999    688887777


Q ss_pred             HHHHHHHHHHHHHhh---c-cc-hh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          118 ILLVSWIGHLLIAFN---V-PG-GL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~---~-~~-~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ...+..++..++...   . +. .. +    +.|++.+...+..+....|.++. +.++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~g~  335 (385)
T TIGR00710       278 GLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-VAGT  335 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-cchH
Confidence            666666555444331   1 11 11 1    67888888888888888887763 3443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=97.86  E-value=0.00024  Score=65.12  Aligned_cols=117  Identities=10%  Similarity=0.012  Sum_probs=77.7

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      .++.+|||.|+.+.+..++............+.+.++ .|.++...........+...++.+++++    +|+++.+.+.
T Consensus       221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g  300 (448)
T PRK09848        221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIG  300 (448)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            5678999999987777666544433333344445554 4776655544444335566778888887    7888888888


Q ss_pred             HHHHHHHHHHHHhhcc--chh-h----hHhhhhhchhhhhHHHHHHhhC
Q 038282          119 LLVSWIGHLLIAFNVP--GGL-N----IMGFNFGAQWPLVFAITSEFFG  160 (234)
Q Consensus       119 ~~~~~i~~~ll~~~~~--~~l-~----l~G~~~G~~~~~~p~l~~~~fG  160 (234)
                      .++.+++.+++.....  .+. +    +.|++.|...+...++.+|.-.
T Consensus       301 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~  349 (448)
T PRK09848        301 ALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVE  349 (448)
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8777777666554221  111 1    7788888888888888877764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.83  E-value=0.00011  Score=67.39  Aligned_cols=123  Identities=19%  Similarity=0.129  Sum_probs=90.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      ..+.+|++.|+...+..++...........++.+.++ .|.++.+++...+..+++..++++++|+    ++|++.+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g  327 (485)
T TIGR00711       248 DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG  327 (485)
T ss_pred             CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence            3568899999987776666555555555677888876 5999999999999999999999999998    7888888877


Q ss_pred             HHHHHHHHHHHHh-hcc--c-h-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          119 LLVSWIGHLLIAF-NVP--G-G-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       119 ~~~~~i~~~ll~~-~~~--~-~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ..+.+++.+++.. ..+  . . .+    +.|++.|...+.......+.++.++.++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~  384 (485)
T TIGR00711       328 LILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIAR  384 (485)
T ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhH
Confidence            7777777766552 111  1 1 11    7888888887666666666666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.82  E-value=7.4e-05  Score=67.30  Aligned_cols=126  Identities=10%  Similarity=-0.076  Sum_probs=87.0

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHh
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMG  141 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G  141 (234)
                      ...++.+.+|.|+|+.+.+.+.+.+.++..++.+.+|+    +|||+++.........+......+.+.. ++    +.|
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34678888999999999999999999999999999999    8988876655554444433222222222 21    888


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      ++.|...+.. ..++|.+..|+.++.          |       ...+. ...+|+..|+ .+++.++.+++...
T Consensus        91 ~g~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903        91 LGQPFLLNAF-APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-TAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             hHhHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHH
Confidence            8888654333 445888888877753          1       22222 2468999999 78877777665544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.0002  Score=67.26  Aligned_cols=70  Identities=14%  Similarity=0.011  Sum_probs=62.3

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-cch
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-FRR  111 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr  111 (234)
                      ..+.+++|+|+.|.+.+..+|.......+.+.++-+.++ .|+|+.++..+...+.++.++|-++.|+ .+|
T Consensus       264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR  335 (495)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence            446799999999999999999988888888899999988 5799999999999999999999999999 344

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.78  E-value=0.0001  Score=72.37  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=78.4

Q ss_pred             HHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccc-hh---h-hHhhhhhchhhhhHHHHHHhhCC
Q 038282           91 FVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPG-GL---N-IMGFNFGAQWPLVFAITSEFFGP  161 (234)
Q Consensus        91 ~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~-~l---~-l~G~~~G~~~~~~p~l~~~~fG~  161 (234)
                      ...+.+++.++|.++.|+    +|||+++.++.++.+++++++....+. .+   . ++|++.++.++...++++|+|.+
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt  679 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPS  679 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            355666888999999999    899999988888888877666553332 22   1 77888888888899999999999


Q ss_pred             CCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          162 KNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       162 ~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                      +..++.          |       .+.+.+  .++..+|+ ++++.++++++.++++
T Consensus       680 ~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~--~~~~~pf~i~a~~lll~~ll~~~LP  734 (742)
T TIGR01299       680 DKRATAFGFLNALCKAAAVLGILIFGSFVG--ITKAAPILFASAALACGGLLALKLP  734 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            988763          1       223322  23566777 7777777777777664

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PTZ00207 hypothetical protein; Provisional

Probab=97.76  E-value=0.0002  Score=68.49  Aligned_cols=127  Identities=12%  Similarity=0.049  Sum_probs=84.1

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc------cch-h--
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV------PGG-L--  137 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~------~~~-l--  137 (234)
                      ....+++.++.|+|..+.+.+.++.. .-....+..|+    +|+|+++.++.++..++.++.+...      +.. +  
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            34556777788999999888777633 33345666788    8999999999999988887777641      111 1  


Q ss_pred             h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------CC---ccccc--cccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          138 N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------ED---DLNCI--GVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       138 ~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g~---g~~~d--~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      +  +.|++.|...+.....+.+.|. ++.+..          |+   +.++.  -..+++..|+ .+.+.++.+++.+.+
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            2  7788888777888888899995 555653          11   10111  1135667777 666666665555544

>PRK11043 putative transporter; Provisional

Probab=97.76  E-value=0.00037  Score=62.61  Aligned_cols=123  Identities=19%  Similarity=0.118  Sum_probs=78.2

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      +.++.+|++++|...+...+..........+.+.+.++.|+++.+.+.......++..+|+++.++    +++++.....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~  274 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWL  274 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            567899999998766555444333333455677788888999988888877778888888888887    5777765444


Q ss_pred             HHHHHHHHHH---HHhh-ccc-h-h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          119 LLVSWIGHLL---IAFN-VPG-G-L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       119 ~~~~~i~~~l---l~~~-~~~-~-l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .+..+++.+.   +... .+. . .   + +.|++.|..++.......+.++ ++.++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  331 (401)
T PRK11043        275 LVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGK  331 (401)
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChH
Confidence            4433333222   2211 111 1 1   1 6677778777777666666664 34443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.75  E-value=0.00013  Score=68.11  Aligned_cols=133  Identities=11%  Similarity=0.054  Sum_probs=78.2

Q ss_pred             hHHhhHHHHHHhhCCChhhHHH------------HHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh
Q 038282           69 LAIDNLRQIGTSLGYPKRGIST------------FVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN  132 (234)
Q Consensus        69 ~~~~~~~~~~~~~G~s~~~aa~------------~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~  132 (234)
                      .+..+.+.+.++.|++...++.            ...+..++..+|.+++++    +|||+.+....+++++++.++...
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3445678888888887543211            233444566778888888    799998887777766655444332


Q ss_pred             c---c-c-hh--h-hHhhh-hhchhhhhHHHHHHhhCCCCCCCC-----------------CCccccccc---------c
Q 038282          133 V---P-G-GL--N-IMGFN-FGAQWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGV---------E  177 (234)
Q Consensus       133 ~---~-~-~l--~-l~G~~-~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~---------g  177 (234)
                      .   + . .+  + +..+. ..+..++...+.+|+|+++..++.                 ..+.+.|..         .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI  465 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence            1   1 1 11  2 22222 222344556677999999988752                 133344432         2


Q ss_pred             ccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          178 CFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       178 ~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ++...|+ .++++++++++.++++.
T Consensus       466 ~~~~~~~i~~~~~~~~~i~~~~lpE  490 (502)
T TIGR00887       466 WMGHVLEIFALFMFLGILFTLLIPE  490 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHheEecc
Confidence            4556777 87777777666544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.71  E-value=0.00011  Score=68.54  Aligned_cols=134  Identities=14%  Similarity=0.111  Sum_probs=103.7

Q ss_pred             hHHHHHHhhCCChhh-HHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-h--h--hHhh
Q 038282           73 NLRQIGTSLGYPKRG-ISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-L--N--IMGF  142 (234)
Q Consensus        73 ~~~~~~~~~G~s~~~-aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l--~--l~G~  142 (234)
                      ..+++.++.|+++.+ .+.+.+.+..+-.+..+..|+    +|.|+++.+..+.-++..+++.++.+.. +  .  ++|+
T Consensus        48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGv  127 (511)
T TIGR00806        48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSV  127 (511)
T ss_pred             HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677789999999 999999999999999999999    7888888887777776666665543322 2  1  9999


Q ss_pred             hhhchhhhhHHHHHHhhCCCCCCCC----------C-------Cccc-cccccccHHHHH-HHHHHHHHHHHHHHHHhhh
Q 038282          143 NFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLN-CIGVECFKLSFI-MTAATLFSAFVSLILVLMT  203 (234)
Q Consensus       143 ~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~-~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~  203 (234)
                      +.|+.+ ....++.+.|..++.++.          |       .+++ ..+-.+|....+ ..+...++.+++++++.++
T Consensus       128 aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       128 TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999 999999999999999863          1       2221 112236888888 8888888999999998766


Q ss_pred             hhhh
Q 038282          204 RKFY  207 (234)
Q Consensus       204 ~~~~  207 (234)
                      |..+
T Consensus       207 ~sl~  210 (511)
T TIGR00806       207 RSLF  210 (511)
T ss_pred             hhhh
Confidence            6554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.71  E-value=0.00038  Score=65.08  Aligned_cols=152  Identities=14%  Similarity=0.065  Sum_probs=98.7

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----c-----chHHH-H
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----F-----RRPLM-L  115 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~-----gr~~~-l  115 (234)
                      +..++++.+.++...+............++.+.++.|.|..+.+.+ +..+.. .+++++||.    +     |||+. +
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~l   84 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWL   84 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHH
Confidence            3445556555555444444444445567888889999998887775 444433 257888888    5     77774 5


Q ss_pred             HHHHHHHHHHHHHHHhhcc--c-h-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Cc
Q 038282          116 TIILLVSWIGHLLIAFNVP--G-G-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DD  170 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~--~-~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g  170 (234)
                      ....+..+++...+....+  . . ++    +.+++.+...+...++..|++..++.++.              +   ..
T Consensus        85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~  164 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL  164 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666555444222  1 1 11    77888888888999999999998888752              1   22


Q ss_pred             cccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          171 LNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      ++.+...+|+.+|+ .+++.++..+..+.+
T Consensus       165 ~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~  194 (491)
T PRK11010        165 WLADRYLGWQGMYWLMAALLIPCIIATLLA  194 (491)
T ss_pred             HHHhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            33332458999999 887777766555443

>TIGR00896 CynX cyanate transporter

Probab=97.70  E-value=0.00012  Score=64.74  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHh
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMG  141 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G  141 (234)
                      ...++.+.++.|.|..+.+...++..++..++.++.|+    +|||+.+....++.+++.++. ...+.. ++    +.|
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g   98 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG   98 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence            34678889999999999999999999999999999999    799999888777766666554 322222 22    778


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ++.|...+..+.++.|.+. ++.++
T Consensus        99 ~g~~~~~~~~~~~~~~~~~-~~~~~  122 (355)
T TIGR00896        99 VGIAIINVLLPSLIKRDFP-QRVGL  122 (355)
T ss_pred             HHHHHHhccchHHHHHhCc-chhhH
Confidence            8888888888999999885 45554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.70  E-value=0.00063  Score=62.14  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=65.7

Q ss_pred             HHHHHHhh---CCChhhH---HHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccc--------
Q 038282           74 LRQIGTSL---GYPKRGI---STFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPG--------  135 (234)
Q Consensus        74 ~~~~~~~~---G~s~~~a---a~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~--------  135 (234)
                      .+.+.++.   +.++.+.   ..+.+...++..+|.+++|+    +|||+.+....++.+++.++.....+.        
T Consensus        45 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (432)
T PRK10406         45 SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAP  124 (432)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Confidence            34455665   3444433   23334444555588888888    899999999888888777665543221        


Q ss_pred             -hh--h--hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          136 -GL--N--IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       136 -~l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                       .+  .  +.|++.|+.++...++++|.+..++.+.
T Consensus       125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~  160 (432)
T PRK10406        125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF  160 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence             12  1  8899999999999999999999888775

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.69  E-value=0.00027  Score=71.92  Aligned_cols=123  Identities=17%  Similarity=0.059  Sum_probs=85.6

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHH-HhhCCC--hhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIG-TSLGYP--KRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~-~~~G~s--~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .+.++++.|+.++++.++......+....+.++. .+.+.+  ....+++.+++.+...++.+++|+    +|||+++..
T Consensus         3 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~   82 (1146)
T PRK08633          3 KNLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRI   82 (1146)
T ss_pred             cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHH
Confidence            3578889999888877776544443333333333 344444  344678888888999999999998    899999887


Q ss_pred             HHHHHHHHHHHHHh---hccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          118 ILLVSWIGHLLIAF---NVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       118 ~~~~~~i~~~ll~~---~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      +.++.++..++...   ..... ++    +.|++.|...+...++++|++..++.++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~  140 (1146)
T PRK08633         83 VKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRA  140 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhh
Confidence            77665544433322   12222 22    88999999999999999999999988863

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.68  E-value=3.6e-05  Score=66.98  Aligned_cols=123  Identities=20%  Similarity=0.264  Sum_probs=85.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhhCCC-hhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQI-GTSLGYP-KRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~G~s-~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .++..+++.+|.+++..++............+.+ .++.|.+ ..+.+...++.++...+++++.|+    +++++....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI  278 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            4677788888855555554443444455667776 5567999 788999999999999999999999    455555555


Q ss_pred             HHHHHHHHHHHHHh-hcc--chh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          118 ILLVSWIGHLLIAF-NVP--GGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       118 ~~~~~~i~~~ll~~-~~~--~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ......++.+.+.. ...  ..+    . +.|++.|...+....++.+.++.++.++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  335 (352)
T PF07690_consen  279 AILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGT  335 (352)
T ss_dssp             HHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            55555444444332 111  111    1 8899999999999999999988776654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.66  E-value=2.4e-05  Score=71.89  Aligned_cols=134  Identities=7%  Similarity=0.131  Sum_probs=102.7

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchh---h--hHhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGL---N--IMGF  142 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l---~--l~G~  142 (234)
                      .-++.+.+..++++...+.+-+++.+...+.-+++|.    ++|++++.+...+-.++.+.-.+....+.   .  +.|+
T Consensus        54 gv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGi  133 (493)
T KOG1330|consen   54 GVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGI  133 (493)
T ss_pred             hhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4455566667999999999999999999999999999    89999988877776666555444333332   2  9999


Q ss_pred             hhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccHHHHH-HHHHHHHHHHHHHHH-Hhhh
Q 038282          143 NFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFKLSFI-MTAATLFSAFVSLIL-VLMT  203 (234)
Q Consensus       143 ~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l-~~~~  203 (234)
                      |...+.++.|++++|.|..++.++.          |       +..+-+.++.|+++|. .+++.++..++.++. +.+.
T Consensus       134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999888862          2       3334445677999999 888888888777665 3334


Q ss_pred             hh
Q 038282          204 RK  205 (234)
Q Consensus       204 ~~  205 (234)
                      |+
T Consensus       214 rg  215 (493)
T KOG1330|consen  214 RG  215 (493)
T ss_pred             cc
Confidence            43

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.64  E-value=0.0014  Score=60.95  Aligned_cols=76  Identities=18%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             HHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch---------h--h--hHhhhhhchhhhhHHH
Q 038282           92 VSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG---------L--N--IMGFNFGAQWPLVFAI  154 (234)
Q Consensus        92 ~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~---------l--~--l~G~~~G~~~~~~p~l  154 (234)
                      .++.-++..+|.+++|+    +|||+++....++.+++.++.....+..         +  .  +.|++.|+.++...++
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            35555777889999998    8999999999999888877766543311         2  1  8899999999999999


Q ss_pred             HHHhhCCCCCCCC
Q 038282          155 TSEFFGPKNHKEP  167 (234)
Q Consensus       155 ~~~~fG~~~~~~~  167 (234)
                      ++|.+..++.+..
T Consensus       143 ~~e~~p~~~Rg~~  155 (490)
T PRK10642        143 VAEYSPDRKRGFM  155 (490)
T ss_pred             HHHhCCCCCCcHH
Confidence            9999998888763

>PRK10133 L-fucose transporter; Provisional

Probab=97.63  E-value=0.00053  Score=63.12  Aligned_cols=112  Identities=10%  Similarity=-0.058  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      .++.+++.++.............|.+.++.|.|+.+.+...+...++..++.+..|+    +|||+++.....+..++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            455555555554444444556677887788999999999999999999999999998    8999999999999888876


Q ss_pred             HHHh---hccch-hh----hHhhhhhchhhhhHHHHHHhhCCCC
Q 038282          128 LIAF---NVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKN  163 (234)
Q Consensus       128 ll~~---~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~  163 (234)
                      +...   +.+.. ++    +.|++.|...+...+++.+....++
T Consensus       107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~  150 (438)
T PRK10133        107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS  150 (438)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence            6431   22222 21    8899999999999999988654433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.54  E-value=0.00018  Score=67.33  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchhh-----hHhhhhhchhhhh
Q 038282           81 LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGLN-----IMGFNFGAQWPLV  151 (234)
Q Consensus        81 ~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l~-----l~G~~~G~~~~~~  151 (234)
                      ...+........+++.++..+|.+++|.    +|||+++..++++..++.+...++.+...+     +.|++.++..++.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence            4677788889999999999999999999    899999999999998877666655443332     8999999999999


Q ss_pred             HHHHHHhhCCCCCCCC----------------CCccccccccccHHHHH-HHHHHHHHHHH
Q 038282          152 FAITSEFFGPKNHKEP----------------EDDLNCIGVECFKLSFI-MTAATLFSAFV  195 (234)
Q Consensus       152 p~l~~~~fG~~~~~~~----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l  195 (234)
                      ..+.+|++++++.+..                +.++.   ..+|+..++ .+....+..++
T Consensus       193 ~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~---~~~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYI---TRDWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999863                12232   238999998 77777666666

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.53  E-value=3.1e-05  Score=74.73  Aligned_cols=95  Identities=18%  Similarity=0.233  Sum_probs=79.0

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc--------------
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV--------------  133 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~--------------  133 (234)
                      ..++++.++.++++.+.+.+.|...+++.++.++.|+    .+|++++.+..++.+++.++...+.              
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~  133 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSS  133 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccc
Confidence            4556666778999999999999999999999999998    7899999998888888887775541              


Q ss_pred             -----------------------------------c-ch-h-h----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          134 -----------------------------------P-GG-L-N----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       134 -----------------------------------~-~~-l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                                                         . .. + +    +.|++.+..+++.++++.|.+..++.+.
T Consensus       134 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~  208 (633)
T TIGR00805       134 TGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL  208 (633)
T ss_pred             cccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence                                               0 01 1 1    8899999999999999999999998875

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.50  E-value=0.00037  Score=63.63  Aligned_cols=160  Identities=13%  Similarity=0.151  Sum_probs=115.1

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      |+++.-+.+....++++.++..=....++.....++. +.|++..+.....-+.++....|.+++|+    +|.|+++.+
T Consensus       244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~  323 (438)
T COG2270         244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI  323 (438)
T ss_pred             HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence            3566666666655555555544333334555666777 68999999999999999999999999999    788887777


Q ss_pred             HHHHHHHHHHHHHhhccc---hhh--hHhhhhhchhhhhHHHHHHhhCCCCCCCC-------C----------Ccccccc
Q 038282          118 ILLVSWIGHLLIAFNVPG---GLN--IMGFNFGAQWPLVFAITSEFFGPKNHKEP-------E----------DDLNCIG  175 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~---~l~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-------g----------~g~~~d~  175 (234)
                      .+++..+.++...+....   +++  ++|++.|+.++..=++.++....++.++.       |          -+..-+.
T Consensus       324 ~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i  403 (438)
T COG2270         324 GLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI  403 (438)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence            777766555444442222   223  99999999999999999999999999884       1          3334556


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          176 VECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      +|+-+..++ ...+..++.++.+.++.+
T Consensus       404 Tg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         404 TGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            788888888 777777777666555433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.50  E-value=0.0013  Score=59.35  Aligned_cols=126  Identities=16%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----c-----chHH-HHHHHHHHHHHHHHHHHhhcc-c--h
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----F-----RRPL-MLTIILLVSWIGHLLIAFNVP-G--G  136 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~-----gr~~-~l~~~~~~~~i~~~ll~~~~~-~--~  136 (234)
                      ...-+|.+.++.|+|.++-+.+.++...  .+.+++||+    +     |||+ ++....++.+++...+....+ .  .
T Consensus        18 ~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~   95 (402)
T PRK11902         18 TSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW   95 (402)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence            4467888999999999999887555554  588899998    4     5655 677777777666665554322 1  1


Q ss_pred             -hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHHHHHHH
Q 038282          137 -LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       137 -l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~  193 (234)
                       ++    +.+++.....+...++++|++..|+.++.              +   .+.+.+...+|+..|+ .+++.++..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~  175 (402)
T PRK11902         96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA  175 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence             12    55777777778889999999998878763              1   1222332358999999 777766655


Q ss_pred             HHHH
Q 038282          194 FVSL  197 (234)
Q Consensus       194 ~l~l  197 (234)
                      +..+
T Consensus       176 l~~~  179 (402)
T PRK11902        176 LTTL  179 (402)
T ss_pred             HHHH
Confidence            5433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.49  E-value=0.00082  Score=62.70  Aligned_cols=122  Identities=11%  Similarity=-0.007  Sum_probs=88.6

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      .+.+|++.|+...+..++............+.+.+. +|.|+.+++......+++..++.++.|+    +|+|+.+....
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~  332 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGM  332 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            578999999887776666555544445567777776 6999999999999999999999999999    78888777777


Q ss_pred             HHHHHHHHHHHhhc--c-ch-h--h--hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          120 LVSWIGHLLIAFNV--P-GG-L--N--IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       120 ~~~~i~~~ll~~~~--~-~~-l--~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ++.+++.+++....  + .. .  +  +.|++.|...+.....+.+....++.+.
T Consensus       333 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~  387 (495)
T PRK14995        333 ALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA  387 (495)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence            77766665543311  1 11 1  2  7899988888777777777666665543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.0016  Score=60.92  Aligned_cols=173  Identities=15%  Similarity=0.073  Sum_probs=105.0

Q ss_pred             CCCCHHHHhccHHHHH----HHHHHHHhhhhHHh-HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cc
Q 038282           40 EDYTILQALFSMDMLI----LFLATICGVGGTLL-AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FR  110 (234)
Q Consensus        40 ~~~~~~~~lk~~~F~~----l~~~~~~~~~~~~~-~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~g  110 (234)
                      ++.+++|+++++..-.    .+...++-...|.. +..+...+.++.|++..++.++-..+++.+.+..++..+    .|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5677899999855332    22222222233333 345666778888999999999999999999999999998    79


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhc----cc--hh-h-------hHhhhhhchh-hhhHHHHHHhhCCCCCCCC--------
Q 038282          111 RPLMLTIILLVSWIGHLLIAFNV----PG--GL-N-------IMGFNFGAQW-PLVFAITSEFFGPKNHKEP--------  167 (234)
Q Consensus       111 r~~~l~~~~~~~~i~~~ll~~~~----~~--~l-~-------l~G~~~G~~~-~~~p~l~~~~fG~~~~~~~--------  167 (234)
                      ||..+..++.++.+..+++....    ..  +. |       ++.++++... ++..-+++|+|.++.....        
T Consensus       334 RRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~  413 (485)
T KOG0569|consen  334 RRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVN  413 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHH
Confidence            99999998888877665554321    11  11 2       3344444332 3344467899998888753        


Q ss_pred             -------C--CccccccccccHHHHH-HHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHh
Q 038282          168 -------E--DDLNCIGVECFKLSFI-MTAATLFSAFVSLI-LVLMTRKFYKSDIHQRF  215 (234)
Q Consensus       168 -------g--~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~-l~~~~~~~~~~~~~~~~  215 (234)
                             +  .-.+++..|.  ..|+ .++.+++..+..+. ++.++.|... ++.+..
T Consensus       414 w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETkgr~~~-eI~~~~  469 (485)
T KOG0569|consen  414 WLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETKGRTPY-EIIEEL  469 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccCCCCHH-HHHHHH
Confidence                   1  1122334466  4555 55555555544433 3444445544 444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.44  E-value=0.0003  Score=64.21  Aligned_cols=119  Identities=22%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      ..++.+|||.|+.++...++..............+.+.. |.+ ...+.+..+..+...++-+++++    +|+|+.+..
T Consensus       217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            467889999999888887776555544445566677764 665 45677777888889999999998    899999999


Q ss_pred             HHHHHHHHHHHHHhhc--cchh-h----hHhhhhhchhhhhHHHHHHhhCCC
Q 038282          118 ILLVSWIGHLLIAFNV--PGGL-N----IMGFNFGAQWPLVFAITSEFFGPK  162 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~--~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~  162 (234)
                      ...+.+++.+++....  +..+ +    +.|++.|..+.+..++.+|+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~  347 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD  347 (428)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence            8888888776665532  2222 2    889999999999999999988743

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.44  E-value=0.00069  Score=63.55  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHH
Q 038282           87 GISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSE  157 (234)
Q Consensus        87 ~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~  157 (234)
                      +.+++.+...+++.+|.+++|.    +|||.++.++.++..++.++...+.... ++    +.|++.|+...+.|.+++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            3489999999999999999998    8999999999999999998887765433 32    9999999999999999999


Q ss_pred             hhCCCCCCC
Q 038282          158 FFGPKNHKE  166 (234)
Q Consensus       158 ~fG~~~~~~  166 (234)
                      +-..+..+.
T Consensus       170 iap~~~RG~  178 (513)
T KOG0254|consen  170 IAPAHIRGT  178 (513)
T ss_pred             cCChhhhHH
Confidence            999988886

>PRK09952 shikimate transporter; Provisional

Probab=97.43  E-value=0.0034  Score=57.56  Aligned_cols=71  Identities=25%  Similarity=0.299  Sum_probs=55.7

Q ss_pred             Hhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch---------hh----hHhhhhhchhhhhHHHHHHhh
Q 038282           97 IWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG---------LN----IMGFNFGAQWPLVFAITSEFF  159 (234)
Q Consensus        97 i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~---------l~----l~G~~~G~~~~~~p~l~~~~f  159 (234)
                      ++..+|.++.|+    +|||+.+....++.+++.++..+..+..         +.    +.|++.|+.++....++.|.+
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence            445677777887    8999999998888888777666543321         21    889999999999999999999


Q ss_pred             CCCCCCCC
Q 038282          160 GPKNHKEP  167 (234)
Q Consensus       160 G~~~~~~~  167 (234)
                      ..|+.+..
T Consensus       155 p~~~rg~~  162 (438)
T PRK09952        155 PKNKKAFY  162 (438)
T ss_pred             CCCCCcHH
Confidence            99888753

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.42  E-value=0.0019  Score=58.13  Aligned_cols=153  Identities=10%  Similarity=0.045  Sum_probs=87.3

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHH-HhhCCChhhHHHHHHHHHH-hcccccccccc---cchHHHH-HH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIG-TSLGYPKRGISTFVSLVNI-WNCLGRVVSGF---FRRPLML-TI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~-~~~G~s~~~aa~~~si~~i-~~~vGRl~~G~---~gr~~~l-~~  117 (234)
                      ..+.+ |.+.|.+++..++.......+...++.+. ++.|.|+.+.+.+.+...+ ....+.+..|+   +|||+.+ ..
T Consensus         9 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~   87 (393)
T PRK15011          9 SAKSF-DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVF   87 (393)
T ss_pred             cchhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            34455 55577777777776655555556666654 5679999999988776654 55566666676   6777654 44


Q ss_pred             HHHHHHHHHHHHHhhccchh-h----hHhhhhhchhhhhHHHHHHhhCCCCCCC-----C-----------C---Ccccc
Q 038282          118 ILLVSWIGHLLIAFNVPGGL-N----IMGFNFGAQWPLVFAITSEFFGPKNHKE-----P-----------E---DDLNC  173 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~~~~l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~-----~-----------g---~g~~~  173 (234)
                      ..+...++..+.....+... +    +.+...+...+....++.+....+....     .           +   ++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~  167 (393)
T PRK15011         88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA  167 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            44444455444444332222 1    3333333444555556666554443211     0           1   33333


Q ss_pred             ccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          174 IGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       174 d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      + .-+|+.+|+ .+...++.+++.+.
T Consensus       168 ~-~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        168 M-GFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             H-hcChHHHHHHHHHHHHHHHHHHHh
Confidence            3 348999999 77766666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.41  E-value=0.0013  Score=58.01  Aligned_cols=128  Identities=14%  Similarity=0.036  Sum_probs=80.6

Q ss_pred             HHhhHHHHH-HhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH-HHHHHHHHHHHHHhhccch-hh----
Q 038282           70 AIDNLRQIG-TSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI-ILLVSWIGHLLIAFNVPGG-LN----  138 (234)
Q Consensus        70 ~~~~~~~~~-~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~-~~~~~~i~~~ll~~~~~~~-l~----  138 (234)
                      ....++.+. ++.|.|+.+.+.+.+...+...+..+++|+    +|||+.+.. ...+..++.++...+.+.. ++    
T Consensus        16 ~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   95 (375)
T TIGR00899        16 QFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGV   95 (375)
T ss_pred             HhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            445566655 567999999999999999999999999998    687776544 4444444444444433322 22    


Q ss_pred             hHhhhhhchhhhhHHHHHHhhCCCCCCC------------C----C---CccccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          139 IMGFNFGAQWPLVFAITSEFFGPKNHKE------------P----E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~------------~----g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      +.|.+.+...+....+..|....+..+.            .    +   .+... ...+|+..|+ .+.+.++..++.+.
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~-~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA-LGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566666666777775444331            0    1   22222 2357999999 77776666655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.00015  Score=67.67  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=101.5

Q ss_pred             hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhcc--ch-h-h---hHhhhhhchhh
Q 038282           81 LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVP--GG-L-N---IMGFNFGAQWP  149 (234)
Q Consensus        81 ~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~--~~-l-~---l~G~~~G~~~~  149 (234)
                      ..++..+-+.+.|-...+..++.+..|+    +|-|+++..+.++.+++.++.+.+..  .. + .   +.|++.|..++
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p  147 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP  147 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence            4677888999999999999999999999    89999999988888888888877543  11 2 2   99999999999


Q ss_pred             hhHHHHHHhhCCCCCCCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          150 LVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       150 ~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      .+..++++....+..++.                 .+|++|+...+|+.+|| .+++.++-.++.+.+..
T Consensus       148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999998888762                 37888998899999999 88888887777666543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.40  E-value=0.0023  Score=58.50  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=71.0

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----h
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----I  139 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l  139 (234)
                      ....++.+.++.|+|..|.+.+.++..+...++.++||+     ..+++.+.+..++.++.++......+.. ++    +
T Consensus        21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l  100 (400)
T PF03825_consen   21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLL  100 (400)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            445688899999999999999999999999999999999     2345555555555555444433333322 21    7


Q ss_pred             HhhhhhchhhhhHHHHHHhhC--CCCCCCC
Q 038282          140 MGFNFGAQWPLVFAITSEFFG--PKNHKEP  167 (234)
Q Consensus       140 ~G~~~G~~~~~~p~l~~~~fG--~~~~~~~  167 (234)
                      +.+.+.+..++.-+++.+.-+  .+++|++
T Consensus       101 ~~~~~~p~~pl~dsi~~~~~~~~~~~YG~i  130 (400)
T PF03825_consen  101 FSFFFSPTMPLSDSIALSYLGDRGKDYGRI  130 (400)
T ss_pred             HHHHHccHHHHHHHHHHHHcccccCCCCcc
Confidence            788888888888888888776  3555654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0022  Score=59.67  Aligned_cols=154  Identities=14%  Similarity=0.161  Sum_probs=109.4

Q ss_pred             HhccH-HHHHHHHHHHHhhhhHHhHHhhHHHHHH-----hhCCChhhHHHHHHHHHHhcccccccccc-----cchHHHH
Q 038282           47 ALFSM-DMLILFLATICGVGGTLLAIDNLRQIGT-----SLGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLML  115 (234)
Q Consensus        47 ~lk~~-~F~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l  115 (234)
                      .+++| .+|.++..-+.--++.+++-..+..+..     .+|+++++|..+++.++-.--+..++.||     .|+++++
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            44443 4666666655555555554333333332     24699999999999999888888888999     7999999


Q ss_pred             HHHHHHHHHHHHHHHhhc-c--chhh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------C-------C
Q 038282          116 TIILLVSWIGHLLIAFNV-P--GGLN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------E-------D  169 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~-~--~~l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------g-------~  169 (234)
                      .+..+++.+|.+++..+. .  ..+|    +++++.|..-+...++++|.|+.++--+=            |       -
T Consensus        96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~  175 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT  175 (498)
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence            999999999999988753 2  2344    78899999999999999999987766541            1       1


Q ss_pred             ccccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          170 DLNCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       170 g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ++. ....+|...|- ++.-...+.+..+..++
T Consensus       176 ~~~-~~~~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         176 GLL-AINYGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             HHH-HHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            111 13456999998 77666667666666554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.40  E-value=0.0011  Score=62.67  Aligned_cols=122  Identities=18%  Similarity=0.136  Sum_probs=85.4

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      ...+|+|.|..+|++-+++..+..+...-.+-+..+..-|+...+.+.....+-..+-.++.|.    ++||++++...+
T Consensus         4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~   83 (524)
T PF05977_consen    4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQL   83 (524)
T ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            3468999999999998887666554333444455566666666666666666666666666776    899999998888


Q ss_pred             HHHHHHHHHHh-h-c---cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          121 VSWIGHLLIAF-N-V---PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       121 ~~~i~~~ll~~-~-~---~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ++++..+++.. . .   +.+ ++    +.|++.....+...++++++.+.++..+
T Consensus        84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~  139 (524)
T PF05977_consen   84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPA  139 (524)
T ss_pred             HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH
Confidence            87654433322 1 1   112 22    7788888888999999999999999875

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.002  Score=56.51  Aligned_cols=131  Identities=12%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH-HHHHHH
Q 038282           50 SMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI-ILLVSW  123 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~-~~~~~~  123 (234)
                      .|.||++.+..++.-..-.=++...+.+-+++ |+|+..++.+.|..-..+.+-.+++|.    .|++.+... .++...
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl  342 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL  342 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence            35799877765554433322333444555664 999999999999999889999999998    677655443 444445


Q ss_pred             HHHHHHHhhc-cchh-h-hHhhhhhc----hhhhhHHHHHHhhCCCCCCCC-----------------CCcccccccccc
Q 038282          124 IGHLLIAFNV-PGGL-N-IMGFNFGA----QWPLVFAITSEFFGPKNHKEP-----------------EDDLNCIGVECF  179 (234)
Q Consensus       124 i~~~ll~~~~-~~~l-~-l~G~~~G~----~~~~~p~l~~~~fG~~~~~~~-----------------g~g~~~d~~g~Y  179 (234)
                      ++...+.+.. ++.. . +.|+.+..    .++++|.+++    .++.|+.                 .+|.+.|+.|+|
T Consensus       343 ~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vp----E~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y  418 (459)
T KOG4686|consen  343 LGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVP----EEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY  418 (459)
T ss_pred             HHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCC----HHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence            5555554421 1111 1 55665554    4455555544    4455541                 488889999988


Q ss_pred             HHHHH
Q 038282          180 KLSFI  184 (234)
Q Consensus       180 ~~~f~  184 (234)
                      +..-.
T Consensus       419 ~~le~  423 (459)
T KOG4686|consen  419 DNLEA  423 (459)
T ss_pred             hhHHH
Confidence            76544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.36  E-value=0.00019  Score=67.80  Aligned_cols=155  Identities=14%  Similarity=0.022  Sum_probs=95.9

Q ss_pred             HhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHH
Q 038282           47 ALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLV  121 (234)
Q Consensus        47 ~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~  121 (234)
                      +.++|....+.+..++.......+...+|.++++ .|.++...+.+.+..+++.++|-++.++    +++.+.+..+.+.
T Consensus       214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~  293 (524)
T PF05977_consen  214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLL  293 (524)
T ss_pred             HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHH
Confidence            3445655443333333222222233446667765 5899999999999999999999999997    5666777777777


Q ss_pred             HHHHHHHHHhhccchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Ccccccccccc
Q 038282          122 SWIGHLLIAFNVPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECF  179 (234)
Q Consensus       122 ~~i~~~ll~~~~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y  179 (234)
                      .+++++.+.+..+.++    . +.|++.....+...+.+-+....+..|+.              |   .|.+.|.. +-
T Consensus       294 ~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~  372 (524)
T PF05977_consen  294 FALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GV  372 (524)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CH
Confidence            7766666555333222    1 77888877777777777777777777763              1   33333332 34


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          180 KLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       180 ~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      ..++. +++..+++.++....+.+
T Consensus       373 ~~al~~a~~~lll~~~~~~~~~l~  396 (524)
T PF05977_consen  373 RTALLIAGAALLLSALIALRFPLR  396 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCc
Confidence            45566 555555555554444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.29  E-value=0.0022  Score=65.61  Aligned_cols=154  Identities=14%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHH-----HhhCCC-hhhHHHHHHHHHHhcccccccccc----cchHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIG-----TSLGYP-KRGISTFVSLVNIWNCLGRVVSGF----FRRPLM  114 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~G~s-~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~  114 (234)
                      .+++|+++|+.+++..+++...-.+....+..+.     .+.+.+ ....+...++..+...+..+++|+    +|||++
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~   84 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL   84 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence            3578899999888877776654322222222221     122222 234566777788888899999998    899987


Q ss_pred             HHHHHHHHH--HHHHHHHhh-ccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---C
Q 038282          115 LTIILLVSW--IGHLLIAFN-VPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---D  169 (234)
Q Consensus       115 l~~~~~~~~--i~~~ll~~~-~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~  169 (234)
                      +........  .+..++... .+.. ++    +.|++.+...+..-+++.+++..++.++.              |   +
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~  164 (1140)
T PRK06814         85 AKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIG  164 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            643222211  111111111 2222 22    88999999999999999999999988863              1   4


Q ss_pred             ccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          170 DLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       170 g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      |++.+ ..+++..|+ .+.+.+++.++.+.+
T Consensus       165 g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1140)
T PRK06814        165 GLATI-SGNFVILVALLMGIAVLGWLASLFI  194 (1140)
T ss_pred             HHHHh-ccccHHHHHHHHHHHHHHHHHHhhC
Confidence            44433 356777776 555555555444444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.29  E-value=0.0014  Score=59.40  Aligned_cols=87  Identities=17%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             HhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchhh-----hHhhhhhchhh
Q 038282           79 TSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGLN-----IMGFNFGAQWP  149 (234)
Q Consensus        79 ~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l~-----l~G~~~G~~~~  149 (234)
                      ++.+.+...++.+-|.+++.+.+..+.||.    +|||.++.+++...++.++++........+     +.|+.- +..+
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~  139 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLS  139 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchH
Confidence            334556678899999999999999999998    899999999888888877777665444222     444444 4567


Q ss_pred             hhHHHHHHhhCCCCCCC
Q 038282          150 LVFAITSEFFGPKNHKE  166 (234)
Q Consensus       150 ~~p~l~~~~fG~~~~~~  166 (234)
                      ++-++++|++-.|+.+.
T Consensus       140 v~rAiisdV~sek~r~l  156 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPL  156 (451)
T ss_pred             HHHHHHHhhcChhhccc
Confidence            77889999999988876

>PRK09669 putative symporter YagG; Provisional

Probab=97.28  E-value=0.0045  Score=56.74  Aligned_cols=118  Identities=13%  Similarity=0.042  Sum_probs=71.2

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTII  118 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~  118 (234)
                      +.++.+||+.||.+++..++..............+.+..--+++..+.+.....+...++.+++++    +|+|+.+...
T Consensus       221 ~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~  300 (444)
T PRK09669        221 DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWT  300 (444)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            457789999999887766554333222112222223322112333444555555777788888888    7888887776


Q ss_pred             HHHHHHHHH-HHHhhcc-chh-h----hHhhhhhchhhhhHHHHHHhhC
Q 038282          119 LLVSWIGHL-LIAFNVP-GGL-N----IMGFNFGAQWPLVFAITSEFFG  160 (234)
Q Consensus       119 ~~~~~i~~~-ll~~~~~-~~l-~----l~G~~~G~~~~~~p~l~~~~fG  160 (234)
                      .+..+++.+ +...+.+ ..+ +    +.|++.+...++..++++|...
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d  349 (444)
T PRK09669        301 IVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVD  349 (444)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            655544332 2222222 222 2    7899999999999999999874

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.26  E-value=0.00022  Score=53.13  Aligned_cols=105  Identities=13%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             HHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchh----h-hHhhhhhchhhhhHHHHHHhhCCCCC
Q 038282           94 LVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNH  164 (234)
Q Consensus        94 i~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~  164 (234)
                      ..++++.++.+++|+    +|||+.+.....+..++.+++....+...    . +.|++.+...+....++.|.+..++.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            445667778888887    78899888877777777665554333221    1 88999999999999999999998887


Q ss_pred             CCC-----------------CCccccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          165 KEP-----------------EDDLNCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       165 ~~~-----------------g~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      ++.                 ..+... ...+|+..|+ .+...+++.++...+
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLA-QFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHh-cccchHHHHHHHHHHHHHHHHHHhhc
Confidence            753                 133333 3356888888 777766666655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.23  E-value=2.5e-05  Score=71.29  Aligned_cols=82  Identities=28%  Similarity=0.313  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc---cchhh-----hHhhhhhchhhhhHH
Q 038282           86 RGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV---PGGLN-----IMGFNFGAQWPLVFA  153 (234)
Q Consensus        86 ~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~---~~~l~-----l~G~~~G~~~~~~p~  153 (234)
                      .+.+...+...++..+|.+++|+    +|||+.+.++.++..++.++...+.   +...+     +.|++.|+..+..+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45678889999999999999998    8999999999989888887776654   33221     999999999999999


Q ss_pred             HHHHhhCCCCCCCC
Q 038282          154 ITSEFFGPKNHKEP  167 (234)
Q Consensus       154 l~~~~fG~~~~~~~  167 (234)
                      ++.|+-..++.+..
T Consensus       126 ~~~E~~~~~~R~~~  139 (451)
T PF00083_consen  126 YISEIAPPKHRGFL  139 (451)
T ss_pred             cccccccccccccc
Confidence            99999999988763

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.17  E-value=0.0037  Score=56.07  Aligned_cols=106  Identities=14%  Similarity=0.037  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH-HHHHHHHH
Q 038282           53 MLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL-LVSWIGHL  127 (234)
Q Consensus        53 F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~-~~~~i~~~  127 (234)
                      +|.+.+.+++.....-.....++.+.++.|.|..+.+.+.++..+...++.+++|.    .+|+....... ....+..+
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            34455555554444334567789999999999999999999999999999999997    45433222111 11111111


Q ss_pred             HHH-hhccch-hh----hHhhhhhchhhhhHHHHHHh
Q 038282          128 LIA-FNVPGG-LN----IMGFNFGAQWPLVFAITSEF  158 (234)
Q Consensus       128 ll~-~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~  158 (234)
                      .+. ...+.. ++    +.+.+.+...+..-+++.+.
T Consensus        86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~  122 (382)
T TIGR00902        86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW  122 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            111 222222 22    56777777777777776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00901 2A0125 AmpG-related permease

Probab=97.17  E-value=0.0024  Score=56.27  Aligned_cols=126  Identities=16%  Similarity=0.066  Sum_probs=79.9

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----c-----chHHH-HHHHHHHHHHHHHHHHhhcc-ch---
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----F-----RRPLM-LTIILLVSWIGHLLIAFNVP-GG---  136 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~-----gr~~~-l~~~~~~~~i~~~ll~~~~~-~~---  136 (234)
                      ..-.+.+.++.|+|..+.+....+ ++...+ ++++|.    +     |||+. +....++.+++.+.+.+..+ ..   
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            346778889999999988877544 444444 888887    3     77776 45555556555444444322 11   


Q ss_pred             hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---Ccccccccc-------ccHHHHH-HHH
Q 038282          137 LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVE-------CFKLSFI-MTA  187 (234)
Q Consensus       137 l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g-------~Y~~~f~-~a~  187 (234)
                      ++    +.+++.+...+...++++|.+..|+.+..              +   .+......+       +|+.+|+ .+.
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence            11    55666777777788899999988888753              1   222222222       3999999 777


Q ss_pred             HHHHHHHHHHH
Q 038282          188 ATLFSAFVSLI  198 (234)
Q Consensus       188 ~~~va~~l~l~  198 (234)
                      +.+++.++.+.
T Consensus       166 ~~l~~~~~~~~  176 (356)
T TIGR00901       166 LILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHHHH
Confidence            76665555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.15  E-value=0.0041  Score=55.74  Aligned_cols=123  Identities=11%  Similarity=0.010  Sum_probs=72.3

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHH-HHHHHHHHHHHHHHHhh-ccchh-h----
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML-TIILLVSWIGHLLIAFN-VPGGL-N----  138 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l-~~~~~~~~i~~~ll~~~-~~~~l-~----  138 (234)
                      +...++.+.++.|.|..+.+.++++..+...++.+++|.    +||+... ....+...+..+.+... .+.+. +    
T Consensus        23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  102 (382)
T PRK11128         23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIG  102 (382)
T ss_pred             HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            556788899999999999999999999999999999998    4542111 11111111111111111 22222 2    


Q ss_pred             hHhhhhhchhhhhHHHHHHhhCCCCCC--CC----------C---CccccccccccHHHHH-HHHHHHHHH
Q 038282          139 IMGFNFGAQWPLVFAITSEFFGPKNHK--EP----------E---DDLNCIGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       139 l~G~~~G~~~~~~p~l~~~~fG~~~~~--~~----------g---~g~~~d~~g~Y~~~f~-~a~~~~va~  193 (234)
                      +.|++.+...+...+++.+....+...  ..          |   ++++.+ ..+|+..|+ .++..++..
T Consensus       103 l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~-~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        103 LFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS-WFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH-HcChhHHHHHHHHHHHHHH
Confidence            577778888887777777663322211  11          1   333333 236888888 665444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.15  E-value=0.0014  Score=61.12  Aligned_cols=168  Identities=15%  Similarity=0.131  Sum_probs=105.8

Q ss_pred             CCCCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----c-----
Q 038282           40 EDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----F-----  109 (234)
Q Consensus        40 ~~~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~-----  109 (234)
                      .+.+.++.++++.+|.+++.-++.......+..++|.+..+ +|++-.+.+.+.++--+...+-++++|.    .     
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            36788999999999999999998887777778899999987 6999999999999999999999999998    1     


Q ss_pred             ----chHHHHHHHHHHHHHHHHHHHhhc-cch---h--h-----hHhhhhhchhhhhHH----HHHHhhCCCCCCC-C--
Q 038282          110 ----RRPLMLTIILLVSWIGHLLIAFNV-PGG---L--N-----IMGFNFGAQWPLVFA----ITSEFFGPKNHKE-P--  167 (234)
Q Consensus       110 ----gr~~~l~~~~~~~~i~~~ll~~~~-~~~---l--~-----l~G~~~G~~~~~~p~----l~~~~fG~~~~~~-~--  167 (234)
                          -||..-.+++...+++++.+.+.. ...   +  +     +.|+..++......-    ...-+.|..+.-. +  
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHH
Confidence                122222344444555555544422 111   1  1     334444443322211    1111122111111 0  


Q ss_pred             -----CCcccc-c-cccccHHHHH-HHHHHHHHHHHHHHHHhhhhhhh
Q 038282          168 -----EDDLNC-I-GVECFKLSFI-MTAATLFSAFVSLILVLMTRKFY  207 (234)
Q Consensus       168 -----g~g~~~-d-~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~~~~  207 (234)
                           ..+.+. | ....|+..|+ .+++.+++.++..+.-.-++..|
T Consensus       407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w  454 (466)
T KOG2532|consen  407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPW  454 (466)
T ss_pred             HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCc
Confidence                 244444 3 2458999999 88888888866555433344444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.06  E-value=0.0079  Score=54.78  Aligned_cols=66  Identities=6%  Similarity=-0.205  Sum_probs=45.1

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHHhcccccccccc
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF  108 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~  108 (234)
                      ..++.+|||.+|...+..++............|.+.++. |.++.+.+........+..++..+.+.
T Consensus       210 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~  276 (413)
T PRK15403        210 DFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVAR  276 (413)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999877776655444444445667787775 899988887765555555665555554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.05  E-value=0.0027  Score=59.40  Aligned_cols=80  Identities=25%  Similarity=0.261  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhc--c-chh--h---hHhhhhhchhhhhHHHH
Q 038282           88 ISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNV--P-GGL--N---IMGFNFGAQWPLVFAIT  155 (234)
Q Consensus        88 aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~--~-~~l--~---l~G~~~G~~~~~~p~l~  155 (234)
                      -+..+|++.++..+|-++.|+    +|||+.+.+..++..++.++.....  + ..+  +   +.|+..|......|-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            356777778899999999998    8999999888877776665554422  2 122  2   99999999999999999


Q ss_pred             HHhhCCCCCCCC
Q 038282          156 SEFFGPKNHKEP  167 (234)
Q Consensus       156 ~~~fG~~~~~~~  167 (234)
                      .|.-..+..|..
T Consensus       142 ~E~sP~~~RG~~  153 (485)
T KOG0569|consen  142 TEISPKNLRGAL  153 (485)
T ss_pred             hhcChhhhccHH
Confidence            999999999863

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.0069  Score=56.38  Aligned_cols=115  Identities=21%  Similarity=0.186  Sum_probs=80.3

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      ..+||+.+-.+.++.++..............+.+. +|.++.+..............+-+++..    +|+|+.+....+
T Consensus       231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~  310 (467)
T COG2211         231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL  310 (467)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence            57789888877775555443333333344555554 5887777767766666666666777776    899999999998


Q ss_pred             HHHHHHHHHHhhccc--hh-h----hHhhhhhchhhhhHHHHHHhhC
Q 038282          121 VSWIGHLLIAFNVPG--GL-N----IMGFNFGAQWPLVFAITSEFFG  160 (234)
Q Consensus       121 ~~~i~~~ll~~~~~~--~l-~----l~G~~~G~~~~~~p~l~~~~fG  160 (234)
                      +.+++.+++.+....  .+ +    +.+++.+...++..++++|+-.
T Consensus       311 ~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD  357 (467)
T COG2211         311 LLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVD  357 (467)
T ss_pred             HHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhh
Confidence            888888777663222  22 2    7789999999999999887754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.99  E-value=0.006  Score=57.13  Aligned_cols=129  Identities=14%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc--------cchHHHHHHH-HHHHHHHHHHHHhhccc------
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF--------FRRPLMLTII-LLVSWIGHLLIAFNVPG------  135 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~--------~gr~~~l~~~-~~~~~i~~~ll~~~~~~------  135 (234)
                      ..+++++.++.|.+....+.++.+..+...+..+++|+        +|||+.+.+. .....++++++.++.+.      
T Consensus        24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~  103 (477)
T TIGR01301        24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD  103 (477)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence            46788899999999999999999999999999999998        6888877664 44444555555442110      


Q ss_pred             -------h---h-h-----hHhhhhhchhhhhHHHHHHhhCCCCCCC--C--------------C---Cccc--cc----
Q 038282          136 -------G---L-N-----IMGFNFGAQWPLVFAITSEFFGPKNHKE--P--------------E---DDLN--CI----  174 (234)
Q Consensus       136 -------~---l-~-----l~G~~~G~~~~~~p~l~~~~fG~~~~~~--~--------------g---~g~~--~d----  174 (234)
                             .   + +     +..++.....+...++++|++..++..+  .              |   ++..  ++    
T Consensus       104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~  183 (477)
T TIGR01301       104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF  183 (477)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence                   0   1 1     3344777777778889999999775421  0              1   2111  11    


Q ss_pred             --------cccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          175 --------GVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       175 --------~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                              ...+++.+|+ .+++.+++.++..+.
T Consensus       184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~  217 (477)
T TIGR01301       184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSA  217 (477)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence                    1137899999 777777766666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.0034  Score=58.13  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=68.4

Q ss_pred             CChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh--ccch------h--h--hHhhhhhc
Q 038282           83 YPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN--VPGG------L--N--IMGFNFGA  146 (234)
Q Consensus        83 ~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~--~~~~------l--~--l~G~~~G~  146 (234)
                      +++...+.+-.+..+++++|++++||    +|||+++-..+++++++-.+...+  .+..      +  |  +.|++.|+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence            55667777777888999999999999    899999999988888877644432  1211      2  2  99999999


Q ss_pred             hhhhhHHHHHHhhCCCCCCC
Q 038282          147 QWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       147 ~~~~~p~l~~~~fG~~~~~~  166 (234)
                      -+|+..+.++|.--.+..|.
T Consensus       161 DYPlSAtI~SE~an~~~RGa  180 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGA  180 (538)
T ss_pred             CCcchHHHhhhhhhhccccc
Confidence            99999999999998888886

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.94  E-value=0.0087  Score=54.09  Aligned_cols=117  Identities=14%  Similarity=-0.112  Sum_probs=71.1

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      ++++++|.++......++............+.+.++ .|.++.+.+.+.+..+++..+|.++.|+    .++++.+...+
T Consensus       199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        199 RVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            466788887755444333333333333445566655 6999999999999999999999999998    34444444443


Q ss_pred             HHHHHHHHHHHhhccchh----h-hHhhhhhchhhhhHHHHHHhhCCCC
Q 038282          120 LVSWIGHLLIAFNVPGGL----N-IMGFNFGAQWPLVFAITSEFFGPKN  163 (234)
Q Consensus       120 ~~~~i~~~ll~~~~~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~  163 (234)
                      . .++..+++....+...    . +.|++.|...+...+.+.+. .+++
T Consensus       279 ~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~  325 (393)
T PRK11195        279 L-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHR-GHVL  325 (393)
T ss_pred             H-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh-Cccc
Confidence            2 2333222222222221    1 67888887776666776665 4443

>TIGR00889 2A0110 nucleoside transporter

Probab=96.91  E-value=0.013  Score=53.58  Aligned_cols=84  Identities=12%  Similarity=0.087  Sum_probs=55.8

Q ss_pred             hhHHHH-HHhhCCChhhHHHHHHHHHHhcccccccccc----cch-HHHHHHHHHHHHHHHHHHHhhccch-hh----hH
Q 038282           72 DNLRQI-GTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRR-PLMLTIILLVSWIGHLLIAFNVPGG-LN----IM  140 (234)
Q Consensus        72 ~~~~~~-~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr-~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~  140 (234)
                      ..++.+ .++.|+|..+.+.+.++..++..++.+++|.    +|| |+.+.+..++..++..+.....+.. ++    +.
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN  102 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            334444 4557999999999999999999999999999    544 6566665655555544444332222 22    66


Q ss_pred             hhhhhchhhhhHHHH
Q 038282          141 GFNFGAQWPLVFAIT  155 (234)
Q Consensus       141 G~~~G~~~~~~p~l~  155 (234)
                      |++.+...+..-++.
T Consensus       103 ~~~~~~~~~~~~~l~  117 (418)
T TIGR00889       103 SLAYMPTIALTNSIS  117 (418)
T ss_pred             HHHHccHHHHHHHHH
Confidence            777666666555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.75  E-value=0.012  Score=51.54  Aligned_cols=70  Identities=31%  Similarity=0.394  Sum_probs=54.3

Q ss_pred             Hhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccc---------hhh----hHhhhhhchhhhhHHHHHHhh
Q 038282           97 IWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPG---------GLN----IMGFNFGAQWPLVFAITSEFF  159 (234)
Q Consensus        97 i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~---------~l~----l~G~~~G~~~~~~p~l~~~~f  159 (234)
                      +...++.+++|+    +|||+.+....++..++.++.....+.         .++    +.|++.|...+..+.+++|.+
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  125 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA  125 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence            334567888888    899999999888888877766654321         111    789999999999999999999


Q ss_pred             CCCCCCC
Q 038282          160 GPKNHKE  166 (234)
Q Consensus       160 G~~~~~~  166 (234)
                      ..++.+.
T Consensus       126 ~~~~r~~  132 (394)
T TIGR00883       126 PPGKRGF  132 (394)
T ss_pred             CcccchH
Confidence            9888875

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11462 putative transporter; Provisional

Probab=96.70  E-value=0.075  Score=49.25  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=63.2

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIIL  119 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~  119 (234)
                      .+..++|+.|+.+....++..............+.+...-++...+.+..+..+.+.+|-+++++    +++|+.+....
T Consensus       221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~  300 (460)
T PRK11462        221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN  300 (460)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            45678888887766554444333222222233333333222333455667777888888888888    56676655443


Q ss_pred             HHHHH-HHHHHHhhccch--hh----hHhhhhhchhhhhHHHHHHhhC
Q 038282          120 LVSWI-GHLLIAFNVPGG--LN----IMGFNFGAQWPLVFAITSEFFG  160 (234)
Q Consensus       120 ~~~~i-~~~ll~~~~~~~--l~----l~G~~~G~~~~~~p~l~~~~fG  160 (234)
                      .+.++ ++++...+....  ++    +.|++.+...++..++++|.-.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d  348 (460)
T PRK11462        301 ALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVD  348 (460)
T ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            33333 332222222211  12    6677777777766677776644

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.69  E-value=0.013  Score=53.37  Aligned_cols=123  Identities=14%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~  117 (234)
                      +++...+|+--.++...++......+=-..+=|+.-+ .|.|..+-+.+-++.+.+..+|-.+.|+     .+.+++...
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~  280 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAAL  280 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            4567777777665555554443333211234455544 6999999999999999999999998888     566676677


Q ss_pred             HHHHHHHHHHHHHhhc---cchhh-----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          118 ILLVSWIGHLLIAFNV---PGGLN-----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~---~~~l~-----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .+...+++..++..+.   +..++     ++|++.|....-..+...++-..++-+.
T Consensus       281 G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~  337 (403)
T PF03209_consen  281 GCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGL  337 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhH
Confidence            7777777666555432   12222     9999999999999999999998888774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.68  E-value=0.0087  Score=56.52  Aligned_cols=148  Identities=16%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhhhhHHhHHh----hHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHH
Q 038282           54 LILFLATICGVGGTLLAID----NLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIG  125 (234)
Q Consensus        54 ~~l~~~~~~~~~~~~~~~~----~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~  125 (234)
                      |.+.++.|+.......+..    ..+.+.++.+.+..+.+++.|+......+..++.+.    +|.|.+.++..++..++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            6666666555544444332    344556677888888999999999888887777777    78899999999999999


Q ss_pred             HHHHHhhccch-h---h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----CCcc---c-------cccccccHHHHH
Q 038282          126 HLLIAFNVPGG-L---N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----EDDL---N-------CIGVECFKLSFI  184 (234)
Q Consensus       126 ~~ll~~~~~~~-l---~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----g~g~---~-------~d~~g~Y~~~f~  184 (234)
                      +++-.++.+.+ +   |  +.|+|.|..+.-...++..+|..|+--..     |.|.   +       .-..-+++.+++
T Consensus       125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l  204 (509)
T KOG2504|consen  125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL  204 (509)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence            98888766533 2   3  88999999999999999999987765331     2221   1       113347888888


Q ss_pred             -HHHHHHHHHHHHHHHHh
Q 038282          185 -MTAATLFSAFVSLILVL  201 (234)
Q Consensus       185 -~a~~~~va~~l~l~l~~  201 (234)
                       .+++.+-.+.....++.
T Consensus       205 ~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  205 IFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence             77777666666665544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.0063  Score=55.48  Aligned_cols=121  Identities=14%  Similarity=0.121  Sum_probs=100.2

Q ss_pred             hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhh
Q 038282           81 LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLV  151 (234)
Q Consensus        81 ~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~  151 (234)
                      .+-++.+.+.+.+..++.+.+..++.|.    +|++.-+.+.++++..+-.++.+....+ ++    +-|++.....+.-
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            4666788899999999999999999998    7999999999999988888877765543 33    9999999999999


Q ss_pred             HHHHHHhhCCCCC-CCC--------------C---CccccccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          152 FAITSEFFGPKNH-KEP--------------E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       152 p~l~~~~fG~~~~-~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      -++++|.|+.++. ++.              |   +|..||. .+|..+|+ .++++++...+.+++..+
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            9999999999985 431              2   5665554 56889999 999999999998887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.57  E-value=0.035  Score=49.69  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=72.4

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccccchHH--HHHHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGFFRRPL--MLTIIL  119 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~~gr~~--~l~~~~  119 (234)
                      ..++.+|++++|...+..++............+.+.++ .|.++.+.+.+..+..++..+|.++.+++.+|.  ......
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~  278 (394)
T PRK11652        199 SYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSV  278 (394)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678899999876655444332222223344556666 799998888888888888888888888833222  222222


Q ss_pred             HHHHHHHHHHHh---hc--cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          120 LVSWIGHLLIAF---NV--PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       120 ~~~~i~~~ll~~---~~--~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ....++.+++..   ..  ... ++    +.|++.|...+.......+.+. ++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~  334 (394)
T PRK11652        279 ICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGT  334 (394)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchH
Confidence            222222222211   11  111 11    7788888888888888888775 44454

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.48  E-value=0.012  Score=53.80  Aligned_cols=94  Identities=21%  Similarity=0.231  Sum_probs=73.9

Q ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch---hh-----hH
Q 038282           73 NLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG---LN-----IM  140 (234)
Q Consensus        73 ~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~---l~-----l~  140 (234)
                      -.+.+.++.|+|+.|.+++.++-.+...+.|+..|.    +|.|++..+..++..+-++.+..+.+..   .+     +.
T Consensus        36 l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~  115 (417)
T COG2223          36 LGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLL  115 (417)
T ss_pred             HHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence            344455778999999999999999999999999998    7888888888888887777776654422   22     33


Q ss_pred             hhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          141 GFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       141 G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      |+ .|+.+++.-+.+++.|.+++.|..
T Consensus       116 G~-~GasFav~m~~~s~~fP~~~qG~A  141 (417)
T COG2223         116 GL-AGASFAVGMPNASFFFPKEKQGLA  141 (417)
T ss_pred             hc-ccceehcccccccccCChhhhhHH
Confidence            33 466778888889999999999863

>PRK15075 citrate-proton symporter; Provisional

Probab=96.47  E-value=0.026  Score=51.51  Aligned_cols=96  Identities=21%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             HhhHHHHHHhhCCChhhHH-HHHHHHH-----Hhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch----
Q 038282           71 IDNLRQIGTSLGYPKRGIS-TFVSLVN-----IWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG----  136 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa-~~~si~~-----i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~----  136 (234)
                      ....+.+.++.+.++.+.+ ...++..     +...+|.+++|+    +|||+.+.....+.+++.++.....+..    
T Consensus        35 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~  114 (434)
T PRK15075         35 GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGL  114 (434)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            3456667788888766543 3333222     223467778888    8999999998888887776666543311    


Q ss_pred             -----hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          137 -----LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       137 -----l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                           ++    +.|++.|...+..+.+++|++..++.++
T Consensus       115 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  153 (434)
T PRK15075        115 AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF  153 (434)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH
Confidence                 11    8899999999999999999999988886

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.39  E-value=0.0095  Score=57.19  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=63.0

Q ss_pred             CCCCHHHHhcc-HHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCCh---hhHHHHHHHHHHhcccccccccc----cc
Q 038282           40 EDYTILQALFS-MDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPK---RGISTFVSLVNIWNCLGRVVSGF----FR  110 (234)
Q Consensus        40 ~~~~~~~~lk~-~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~---~~aa~~~si~~i~~~vGRl~~G~----~g  110 (234)
                      .++-+.+++|+ +.|+..++..++..+..+......+...... +-+.   ...+......+.+..+|.++.|+    ++
T Consensus       298 ~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir  377 (599)
T PF06609_consen  298 DPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR  377 (599)
T ss_pred             CCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc
Confidence            34567789998 5577655555554434444444455554443 3333   24556666777777888888887    45


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHhhcc---chh--h--hHhhhhhchhhhhHH
Q 038282          111 RPLML-TIILLVSWIGHLLIAFNVP---GGL--N--IMGFNFGAQWPLVFA  153 (234)
Q Consensus       111 r~~~l-~~~~~~~~i~~~ll~~~~~---~~l--~--l~G~~~G~~~~~~p~  153 (234)
                      |.+.. +++.+++.+++.++....+   ...  +  +.|++.|........
T Consensus       378 ~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~  428 (599)
T PF06609_consen  378 HIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV  428 (599)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence            55554 4555555555444443222   111  2  666666665544433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00788 fbt folate/biopterin transporter

Probab=96.21  E-value=0.0098  Score=55.33  Aligned_cols=122  Identities=8%  Similarity=-0.050  Sum_probs=81.1

Q ss_pred             HHHHhccHHHHHHHHHHHH-hhh-hHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           44 ILQALFSMDMLILFLATIC-GVG-GTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      ..+.+++|..|...+..++ ... .+.....+. ......|+++.+.+.+.+..++++.+|-.+.++    ++.++++.+
T Consensus       245 l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~  323 (468)
T TIGR00788       245 LRGAIQLLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGV  323 (468)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence            4567888998875554444 221 111100000 111357999999999999999999999999998    677777777


Q ss_pred             HHHHHHHHHHHHHh-----h----ccchhh------hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          118 ILLVSWIGHLLIAF-----N----VPGGLN------IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       118 ~~~~~~i~~~ll~~-----~----~~~~l~------l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ..++.+++.+....     .    .+...+      +.+++.|..+.....++.+....++-++
T Consensus       324 ~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt  387 (468)
T TIGR00788       324 TTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESS  387 (468)
T ss_pred             HHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceeh
Confidence            77777665533221     0    011111      7788888888888899999998888776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.16  E-value=0.033  Score=53.93  Aligned_cols=84  Identities=19%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHH-hcccccccccc----c--chHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNI-WNCLGRVVSGF----F--RRPLML  115 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i-~~~vGRl~~G~----~--gr~~~l  115 (234)
                      .++++|+|.||...+..++.......+...++.+.++ .|+++.+++.+.++..+ +..+|.++.|+    +  +.++.+
T Consensus       323 ~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~  402 (633)
T TIGR00805       323 IKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAA  402 (633)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHH
Confidence            4578999999998888887777766677889999886 69999999998888776 56789999998    2  345556


Q ss_pred             HHHHHHHHHHHH
Q 038282          116 TIILLVSWIGHL  127 (234)
Q Consensus       116 ~~~~~~~~i~~~  127 (234)
                      ....++..++++
T Consensus       403 ~~~~~~~~~~~~  414 (633)
T TIGR00805       403 YFAICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHHHHH
Confidence            666655555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.86  E-value=0.071  Score=48.17  Aligned_cols=90  Identities=13%  Similarity=0.065  Sum_probs=59.0

Q ss_pred             HHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc--------cch-HHHHHHHHHHHHHHHHHHHhhccc----
Q 038282           70 AIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF--------FRR-PLMLTIILLVSWIGHLLIAFNVPG----  135 (234)
Q Consensus        70 ~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~--------~gr-~~~l~~~~~~~~i~~~ll~~~~~~----  135 (234)
                      +..++.++.+ +.|+|+.+++.++++..+.+.+..++.|+        .|| |..+.....+.+++.+++....+.    
T Consensus        18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~   97 (437)
T TIGR00792        18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG   97 (437)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence            3345555555 57999999999999999999999999999        345 445666666666666555442211    


Q ss_pred             -hhh------hHhhhhhchhhhhHHHHHHhh
Q 038282          136 -GLN------IMGFNFGAQWPLVFAITSEFF  159 (234)
Q Consensus       136 -~l~------l~G~~~G~~~~~~p~l~~~~f  159 (234)
                       ..+      +++.+++.......++.+++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  128 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAIT  128 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCccccc
Confidence             111      556666554444455566655

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.80  E-value=0.036  Score=51.25  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=68.9

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc-cchHH----HHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF-FRRPL----MLTI  117 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr~~----~l~~  117 (234)
                      +.++.++|++|.++.+.+.++.+.-......+-......|++...++....+.-+...+|.++.|. .+|.+    ++++
T Consensus       258 si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v  337 (480)
T KOG2563|consen  258 SIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLV  337 (480)
T ss_pred             HHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            357899999998877666544433333333333334455888877888888888889999999998 45543    3333


Q ss_pred             HHHHHHHH-HHHHHh-hcc-c--hhh----hHhhhhhchhhhhHHHHHHhhCC
Q 038282          118 ILLVSWIG-HLLIAF-NVP-G--GLN----IMGFNFGAQWPLVFAITSEFFGP  161 (234)
Q Consensus       118 ~~~~~~i~-~~ll~~-~~~-~--~l~----l~G~~~G~~~~~~p~l~~~~fG~  161 (234)
                      .+....++ +.+... ... .  .+|    ++|++.-+..++---+-.|...+
T Consensus       338 ~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP  390 (480)
T KOG2563|consen  338 LYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP  390 (480)
T ss_pred             HHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc
Confidence            33333333 222221 111 1  123    77777777766554444444433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=95.59  E-value=0.036  Score=50.50  Aligned_cols=109  Identities=9%  Similarity=0.105  Sum_probs=75.5

Q ss_pred             HHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchh-----hhHhhhhhchhhhhHHHHHHhhCCCCC
Q 038282           94 LVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGL-----NIMGFNFGAQWPLVFAITSEFFGPKNH  164 (234)
Q Consensus        94 i~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l-----~l~G~~~G~~~~~~p~l~~~~fG~~~~  164 (234)
                      +..+....|-++.|+    +|||+++.+.++++++..+++........     +..-++..+.+.+.-.+++|+|.+.-.
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            455677899999998    89999999999999988877776543221     245556666666666778888887777


Q ss_pred             CCC---------CCccccc------cccccHHHHHHHHHHHHHHHHHHHHHhh
Q 038282          165 KEP---------EDDLNCI------GVECFKLSFIMTAATLFSAFVSLILVLM  202 (234)
Q Consensus       165 ~~~---------g~g~~~d------~~g~Y~~~f~~a~~~~va~~l~l~l~~~  202 (234)
                      +.-         .+|..+.      ....|-+.++.+++++++.+++.+++.+
T Consensus       469 atgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence            652         1333322      2334656666778888888888777654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=95.31  E-value=0.068  Score=49.78  Aligned_cols=156  Identities=16%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             HhhHHHHHHhhCCChhhHHH----HHH----HHHHhccc-ccccccc----cchHHHHHHHHHHHHHHHHHHHhhcc-c-
Q 038282           71 IDNLRQIGTSLGYPKRGIST----FVS----LVNIWNCL-GRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVP-G-  135 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~----~~s----i~~i~~~v-GRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~-~-  135 (234)
                      .-+++.+.++.|+.+.....    -++    ++++++.+ |-.+...    +|||++....++++++..+.+..+-. . 
T Consensus       324 nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~  403 (538)
T KOG0252|consen  324 NLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE  403 (538)
T ss_pred             ccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc
Confidence            34677888888876654443    222    33333333 3333333    79999999999999887776655322 1 


Q ss_pred             ---h---hh---hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C-------Cccc----cccccccHHHHH-
Q 038282          136 ---G---LN---IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLN----CIGVECFKLSFI-  184 (234)
Q Consensus       136 ---~---l~---l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~----~d~~g~Y~~~f~-  184 (234)
                         .   +|   .+-..+|...+.+ .+-+|.|.++-.+..          |       ....    +--..+++.+|+ 
T Consensus       404 ~~~Gf~v~y~l~~ff~NFGPn~ttf-ivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i  482 (538)
T KOG0252|consen  404 NTIGFVVLYSLTFFFGNFGPNATTF-IVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFII  482 (538)
T ss_pred             ccCceeehHHHHHHHHhcCCCceeE-EeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHH
Confidence               1   23   3333344443332 344678888877762          1       1111    112467999999 


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhHHhhccccchhhhhhc
Q 038282          185 MTAATLFSAFVSLILVLMTRKFYKSDIHQRFREAAAKSAADKGEMEQYN  233 (234)
Q Consensus       185 ~a~~~~va~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (234)
                      .+++++++.++.++++..++|.. |-+     ++++++...+|++||-|
T Consensus       483 ~~~~~~~gi~~T~l~pEtk~~~l-eei-----~~e~~~~~~~~~~~~~~  525 (538)
T KOG0252|consen  483 LAGCMLLGILFTLLIPETKGKSL-EEI-----SNEEESNGGEGKMEEND  525 (538)
T ss_pred             HHHHHHHhHheeEEeecccccCH-HHh-----cChhhcccCCCccccCC
Confidence            99999999999988884444443 333     66777888888888764

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.29  E-value=0.11  Score=48.67  Aligned_cols=131  Identities=11%  Similarity=0.072  Sum_probs=82.7

Q ss_pred             HHhhHHHHHHh--hCCChhhHHHHHHHHHHhcccccccccc----cch-HHHHHHHHHHHHHHHHHHH-hhc-cc-hhh-
Q 038282           70 AIDNLRQIGTS--LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRR-PLMLTIILLVSWIGHLLIA-FNV-PG-GLN-  138 (234)
Q Consensus        70 ~~~~~~~~~~~--~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr-~~~l~~~~~~~~i~~~ll~-~~~-~~-~l~-  138 (234)
                      +....-++.++  .+.+++..+.+++..+++.+++.+.+|+    .+. |+-++.+++++++|+++.. ... +. ..| 
T Consensus        53 ~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~  132 (488)
T KOG2325|consen   53 YLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYL  132 (488)
T ss_pred             EEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            34567788887  7889999999999999999999999998    222 5567888888888887763 221 11 222 


Q ss_pred             ------hHhhhhhchhhhhHHHHHHhh-CCCCCCC-------C----------------C-Ccccc---ccccccHHHHH
Q 038282          139 ------IMGFNFGAQWPLVFAITSEFF-GPKNHKE-------P----------------E-DDLNC---IGVECFKLSFI  184 (234)
Q Consensus       139 ------l~G~~~G~~~~~~p~l~~~~f-G~~~~~~-------~----------------g-~g~~~---d~~g~Y~~~f~  184 (234)
                            +.|++.|.....-..+...-. +.|..+.       .                + -|+..   ..-+.|+.+-+
T Consensus       133 mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w  212 (488)
T KOG2325|consen  133 MLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW  212 (488)
T ss_pred             HHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence                  667776665444332222111 1111110       0                1 12211   12467999888


Q ss_pred             -HHHHHHHHHHHHHHHH
Q 038282          185 -MTAATLFSAFVSLILV  200 (234)
Q Consensus       185 -~a~~~~va~~l~l~l~  200 (234)
                       ++.+.++.+++..+.-
T Consensus       213 ~m~i~~i~~~v~i~~~f  229 (488)
T KOG2325|consen  213 LMAILWIIYIVIILFFF  229 (488)
T ss_pred             HHHHHHHHHHHHHHhhe
Confidence             8888888887776653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.16  E-value=0.11  Score=48.94  Aligned_cols=119  Identities=23%  Similarity=0.238  Sum_probs=79.0

Q ss_pred             HhhCCChhhHHHHHHHHHHhcccccccccc-cchHHHHHHHHHHHHHHHHHHHh----hccch-h--h--hHhhhhhchh
Q 038282           79 TSLGYPKRGISTFVSLVNIWNCLGRVVSGF-FRRPLMLTIILLVSWIGHLLIAF----NVPGG-L--N--IMGFNFGAQW  148 (234)
Q Consensus        79 ~~~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr~~~l~~~~~~~~i~~~ll~~----~~~~~-l--~--l~G~~~G~~~  148 (234)
                      +|.+....+.+.+.+++.++-++|.+.+|. ..|-. +...+..+++...++..    ..+.+ +  .  +.|+.-++.+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w  152 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-LSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW  152 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence            455677778999999999999999999999 33333 22222222222222211    11222 1  1  9999999999


Q ss_pred             hhhHHHHHHhhCCCCCCCC----------C---Ccccc---------ccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          149 PLVFAITSEFFGPKNHKEP----------E---DDLNC---------IGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       149 ~~~p~l~~~~fG~~~~~~~----------g---~g~~~---------d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      |....+++..|+.++.+..          |   ++.+.         ...-+|++.|+ .++++++..+++++
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence            9999999999999999863          1   11111         12358999999 77777777766544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.95  E-value=0.32  Score=43.48  Aligned_cols=130  Identities=15%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             hHHhhHHHHHHhhCCChhhHHHH--HHHHHHhcccccccc-cc----cchHHHHHHHH-HHHHHHHHHHH-h-hccc-h-
Q 038282           69 LAIDNLRQIGTSLGYPKRGISTF--VSLVNIWNCLGRVVS-GF----FRRPLMLTIIL-LVSWIGHLLIA-F-NVPG-G-  136 (234)
Q Consensus        69 ~~~~~~~~~~~~~G~s~~~aa~~--~si~~i~~~vGRl~~-G~----~gr~~~l~~~~-~~~~i~~~ll~-~-~~~~-~-  136 (234)
                      .....++.+.++.|+|..+.+.+  .++..+...+..+++ ++    .|||+...+.. ++.+++...+. . .... . 
T Consensus        19 ~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (390)
T TIGR02718        19 LAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAG   98 (390)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHH
Confidence            35578889999999999988876  455566676666666 43    57776653333 22222222222 1 1111 1 


Q ss_pred             h-h----hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C---C----ccccccccccHHHHH-HHHHHHHHH
Q 038282          137 L-N----IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E---D----DLNCIGVECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       137 l-~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~----g~~~d~~g~Y~~~f~-~a~~~~va~  193 (234)
                      + .    +..++....-+..-.+..|....++.+..          |   +    ++.. ..-+++.+|+ .+++.++..
T Consensus        99 ~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~-~~~gw~~~f~~~a~l~~~~~  177 (390)
T TIGR02718        99 WAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF-GKFGQRPAFLLVACVPLASL  177 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHH
Confidence            1 1    33344444445555566777766666542          1   1    1222 2346899999 888777766


Q ss_pred             HHHHHH
Q 038282          194 FVSLIL  199 (234)
Q Consensus       194 ~l~l~l  199 (234)
                      +..+.+
T Consensus       178 ~~~~~~  183 (390)
T TIGR02718       178 VCVLWL  183 (390)
T ss_pred             HHHHHc
Confidence            665444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=94.83  E-value=0.28  Score=44.91  Aligned_cols=89  Identities=11%  Similarity=0.061  Sum_probs=57.5

Q ss_pred             hhHHHH-HHhhCCChhhHHHHHHHHHHhcccccccccc--------cch-HHHHHHHHHHHHHHHHHHHhhcc---c--h
Q 038282           72 DNLRQI-GTSLGYPKRGISTFVSLVNIWNCLGRVVSGF--------FRR-PLMLTIILLVSWIGHLLIAFNVP---G--G  136 (234)
Q Consensus        72 ~~~~~~-~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~--------~gr-~~~l~~~~~~~~i~~~ll~~~~~---~--~  136 (234)
                      .++..+ .++.|+|..+++.++++..+.+.+.-++.|+        .|| |.++....++.+++..++.....   .  .
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            344444 4457999999999999999999999999999        344 45566666666665544443211   1  1


Q ss_pred             hh------hHhhhhhchhhhhHHHHHHhhC
Q 038282          137 LN------IMGFNFGAQWPLVFAITSEFFG  160 (234)
Q Consensus       137 l~------l~G~~~G~~~~~~p~l~~~~fG  160 (234)
                      +|      +++.++.......-++.+|+..
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~  139 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITN  139 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcC
Confidence            22      4455555555555566677663

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.75  E-value=0.089  Score=51.25  Aligned_cols=120  Identities=15%  Similarity=0.232  Sum_probs=84.8

Q ss_pred             hhCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHHHHHHHHHHHHHHHhhc-cc-------h-hh----hHh
Q 038282           80 SLGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTIILLVSWIGHLLIAFNV-PG-------G-LN----IMG  141 (234)
Q Consensus        80 ~~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~~~~~~~i~~~ll~~~~-~~-------~-l~----l~G  141 (234)
                      ..|.++..++.+...+....-+..++.|+     +|+++++.+..++..+++.++.... +.       . .+    +..
T Consensus        17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia   96 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA   96 (654)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence            47999988888888777777777777777     8999999999999888887776531 11       1 11    888


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCCCC-------------C-------Ccccccc------ccccHHHHH-HHHHHHHHHH
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHKEP-------------E-------DDLNCIG------VECFKLSFI-MTAATLFSAF  194 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~~~-------------g-------~g~~~d~------~g~Y~~~f~-~a~~~~va~~  194 (234)
                      .|.|+.-+.+.+...|-|..++..+.             |       .+++.+.      ..+|..+|. .+++++++.+
T Consensus        97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l  176 (654)
T TIGR00926        97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI  176 (654)
T ss_pred             hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence            89999999999999999976543321             1       1111111      236888888 7777777776


Q ss_pred             HHHHH
Q 038282          195 VSLIL  199 (234)
Q Consensus       195 l~l~l  199 (234)
                      +.+..
T Consensus       177 vf~~g  181 (654)
T TIGR00926       177 VFMAG  181 (654)
T ss_pred             HHHHh
Confidence            65543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.52  E-value=0.22  Score=48.86  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhc-ccccccccc
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWN-CLGRVVSGF  108 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~-~vGRl~~G~  108 (234)
                      .++.++||.|....++..+-.........++|.+.+. .|.+++.|..+...+++.. ++|-++.|+
T Consensus       385 ~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~  451 (735)
T KOG3626|consen  385 IKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGL  451 (735)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccce
Confidence            5688999999888887777666666677889999886 4999999999998888644 577778888

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.25  E-value=0.18  Score=35.10  Aligned_cols=48  Identities=17%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      +..+++-+.++.|+++.+.+.+.++..+...++.++||+    .++++.+..
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~   70 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL   70 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence            456788888999999999999999999999999999999    455554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=94.06  E-value=0.085  Score=48.53  Aligned_cols=61  Identities=16%  Similarity=0.023  Sum_probs=44.2

Q ss_pred             hccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc
Q 038282           48 LFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF  108 (234)
Q Consensus        48 lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~  108 (234)
                      .|++.||.+-..+++.-..--......+...++ .|+|..+.+.+.|+.++...+..++.|.
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~   65 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGF   65 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            578889987666655433322244566677765 7999999999999999999999999998

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.05  E-value=0.2  Score=45.82  Aligned_cols=96  Identities=11%  Similarity=-0.044  Sum_probs=72.8

Q ss_pred             HHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhcc-ch--hh---
Q 038282           70 AIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVP-GG--LN---  138 (234)
Q Consensus        70 ~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~-~~--l~---  138 (234)
                      ....+.|..++ ..++..+++.+-...-.+-..+.+..|+    +|.|..+.+.+.++++++.+++-+.. ..  .+   
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~  110 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVA  110 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            44445555554 6899999988777777777777888888    89999999999999999988865332 21  11   


Q ss_pred             --hHhhhhhchhhhhHHHHHHhhCCCCCC
Q 038282          139 --IMGFNFGAQWPLVFAITSEFFGPKNHK  165 (234)
Q Consensus       139 --l~G~~~G~~~~~~p~l~~~~fG~~~~~  165 (234)
                        +.|.|.|..-+...+++..+...++-+
T Consensus       111 lFila~Gi~~LetaaNp~v~~lg~~~~a~  139 (422)
T COG0738         111 LFILASGIGLLETAANPYVTLLGKPESAA  139 (422)
T ss_pred             HHHHHhhhHHHHhccchHHHHhCCchhHH
Confidence              778888888899999999888776444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.77  E-value=0.66  Score=42.06  Aligned_cols=128  Identities=15%  Similarity=0.021  Sum_probs=90.8

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchhh----hHhhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFN  143 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l~----l~G~~  143 (234)
                      .-++.+-++.|.|.+.++.+.++--++-.+..++..+    +|..+.+...+++.+++.++=.......++    +.|.+
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~g  112 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAG  112 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence            4456666778999999999888888777777777776    677777777777777777554433222344    88999


Q ss_pred             hhchhhhhHHHHHHhhCCCCCCC---C----------CCcc---ccccccccHHHHH-HHHHHHHHHHHHHHH
Q 038282          144 FGAQWPLVFAITSEFFGPKNHKE---P----------EDDL---NCIGVECFKLSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       144 ~G~~~~~~p~l~~~~fG~~~~~~---~----------g~g~---~~d~~g~Y~~~f~-~a~~~~va~~l~l~l  199 (234)
                      .+..-.+.|.++-+.|+.|--.-   +          +++.   +-...++|+.+.. -+..++++.++.+.-
T Consensus       113 Iav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         113 IAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998765432   1          1121   1222368999998 888888887765443

>TIGR00788 fbt folate/biopterin transporter

Probab=93.31  E-value=0.99  Score=41.97  Aligned_cols=145  Identities=18%  Similarity=0.069  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cc-----hHHHHHHHHHHH
Q 038282           53 MLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FR-----RPLMLTIILLVS  122 (234)
Q Consensus        53 F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~g-----r~~~l~~~~~~~  122 (234)
                      ...+...++.-... ..+...+.++.++ .|+|..+.+...++.++...+ +++||.    ++     ||+.+.+..++.
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence            33333334433333 3344566777775 699999999999999988777 555887    43     666666665555


Q ss_pred             H-HHHHHHHhhccc-h--h--h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-------------C-------Ccccccc
Q 038282          123 W-IGHLLIAFNVPG-G--L--N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-------------E-------DDLNCIG  175 (234)
Q Consensus       123 ~-i~~~ll~~~~~~-~--l--~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-------------g-------~g~~~d~  175 (234)
                      . +++..+....+. .  .  . +.+++.+..-...-.+..|... ++....             |       +|... .
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~-~  183 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL-D  183 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH-H
Confidence            2 333222221111 1  1  1 7777777777888888888887 333321             1       22222 2


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          176 VECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ..+++..|+ .+++.++..+..++++.
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E  210 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFVSNLSKE  210 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhccc
Confidence            235888888 77777766444444433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=93.10  E-value=1.5  Score=41.22  Aligned_cols=152  Identities=14%  Similarity=0.022  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhh-CCCh------hh----HHHHHHHHHHhcccccccccc----cc-hHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQI-GTSL-GYPK------RG----ISTFVSLVNIWNCLGRVVSGF----FR-RPL  113 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-G~s~------~~----aa~~~si~~i~~~vGRl~~G~----~g-r~~  113 (234)
                      +.+|.+++..+++...-+.+..+..++ .++. +-++      ++    ..+...+.++.+.+..++.-+    +| ||.
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            678999999888886655544444444 4442 2221      11    233333444444433333333    66 467


Q ss_pred             HHHHHHHHHHHHHHHHHh-hc------c--------------ch-h---h-hHhhhhhchhhhhHHHHHHhhCC--CCCC
Q 038282          114 MLTIILLVSWIGHLLIAF-NV------P--------------GG-L---N-IMGFNFGAQWPLVFAITSEFFGP--KNHK  165 (234)
Q Consensus       114 ~l~~~~~~~~i~~~ll~~-~~------~--------------~~-l---~-l~G~~~G~~~~~~p~l~~~~fG~--~~~~  165 (234)
                      +..++.++.++++....+ ..      +              .. .   + +.|+.+....++--++++++-..  ++.|
T Consensus       338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G  417 (477)
T TIGR01301       338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence            767887777766655542 11      0              01 1   2 89999999999999999998884  4445


Q ss_pred             CC-----------------CCcccccccc-ccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          166 EP-----------------EDDLNCIGVE-CFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       166 ~~-----------------g~g~~~d~~g-~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                      .+                 +.|.+.+..| +-..++. .++++++++++++.+..|
T Consensus       418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            42                 2443333334 4456666 888888888887766443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=92.95  E-value=0.29  Score=44.55  Aligned_cols=89  Identities=15%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             hHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc--------cchH-HHHHHHHHHHHHHHHHHHhhcc----c--h
Q 038282           73 NLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF--------FRRP-LMLTIILLVSWIGHLLIAFNVP----G--G  136 (234)
Q Consensus        73 ~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~--------~gr~-~~l~~~~~~~~i~~~ll~~~~~----~--~  136 (234)
                      ++.++.++ .|+++...+.+..+..+.+.+--++.|.        .||+ .++....++.+++..++....+    .  .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            45555555 5999999999999999999999999998        4544 4556677777777776665312    1  1


Q ss_pred             -h-----h-hHhhhhhchhhhhHHHHHHhhCC
Q 038282          137 -L-----N-IMGFNFGAQWPLVFAITSEFFGP  161 (234)
Q Consensus       137 -l-----~-l~G~~~G~~~~~~p~l~~~~fG~  161 (234)
                       .     | ++.+++.......-++.+|+...
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~  134 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPD  134 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCcccccc
Confidence             1     1 55666666666666677777754

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=92.86  E-value=1.5  Score=37.68  Aligned_cols=60  Identities=22%  Similarity=0.391  Sum_probs=47.1

Q ss_pred             hhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh
Q 038282           72 DNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN  132 (234)
Q Consensus        72 ~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~  132 (234)
                      .+.+.+-+..|+|..+...+...-.++..+| +..|.    .|.+.++.+..+...+|..+++..
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555567999999999888888888876 77787    677788888888888888777663

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=92.44  E-value=0.17  Score=47.99  Aligned_cols=151  Identities=14%  Similarity=0.117  Sum_probs=85.9

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHh-HHhhHHHHHHhhCCChhhHHHHHHHHHHhccccc----ccccc----cchHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLL-AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGR----VVSGF----FRRPLMLT  116 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~-~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGR----l~~G~----~gr~~~l~  116 (234)
                      +++.+++.-+++...+. ++.+.. +.+++-=+.++.|-.+..-+    +.++.+-+|-    ++.++    +|+.+++.
T Consensus       366 ~~~~s~~~llff~~av~-mG~g~~lv~tFLfWHled~~~~~~LfG----v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~  440 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVV-MGAGVGLVFTFLFWHLEDLGGIKTLFG----VVSALCHAGEILFYFFSFKLIEKIGHVNVMY  440 (618)
T ss_pred             HHhcCCCEEehhHHHHH-HHHHHHHHHHHHHHHHhhcCCcceeee----ehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence            56666665443332222 222222 34455556677664443333    3333333333    33444    68888887


Q ss_pred             HHHHHHHHHHHHHHhhccchh---h--hHhhhhhchhhhhHHHHHHhhCCCCCCCC---------C---------Ccccc
Q 038282          117 IILLVSWIGHLLIAFNVPGGL---N--IMGFNFGAQWPLVFAITSEFFGPKNHKEP---------E---------DDLNC  173 (234)
Q Consensus       117 ~~~~~~~i~~~ll~~~~~~~l---~--l~G~~~G~~~~~~p~l~~~~fG~~~~~~~---------g---------~g~~~  173 (234)
                      +.+....+=.+.+....+++.   .  +-|+..+..|..+.+++++.-.++--.+.         |         +|...
T Consensus       441 lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v  520 (618)
T KOG3762|consen  441 LGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV  520 (618)
T ss_pred             ehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence            777766654444444444442   2  88999999999999999998877665531         1         33332


Q ss_pred             ccccccHHHHH-HHHHHHHHHHHHHHHHhh
Q 038282          174 IGVECFKLSFI-MTAATLFSAFVSLILVLM  202 (234)
Q Consensus       174 d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~  202 (234)
                       ..-+=+..|. ++..+++.+++.+.+++.
T Consensus       521 -~~fg~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  521 -ERFGARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             -eeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             2233456666 666666666666666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.35  E-value=1.5  Score=40.57  Aligned_cols=89  Identities=12%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             HhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc--------cch-HHHHHHHHHHHHHHHHHHHhhc--c-c--
Q 038282           71 IDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF--------FRR-PLMLTIILLVSWIGHLLIAFNV--P-G--  135 (234)
Q Consensus        71 ~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~--------~gr-~~~l~~~~~~~~i~~~ll~~~~--~-~--  135 (234)
                      ..++..+.++ .|+++.+.+.++++..+.+.+.-+++|+        +|| |.++..+.+.++++..+++.+.  + .  
T Consensus        26 ~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~  105 (473)
T PRK10429         26 YMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQ  105 (473)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHH
Confidence            3445555555 5999999999999999999999999999        466 5566667677777655554421  1 1  


Q ss_pred             hhh------hHhhhhhchhhhhHHHHHHhh
Q 038282          136 GLN------IMGFNFGAQWPLVFAITSEFF  159 (234)
Q Consensus       136 ~l~------l~G~~~G~~~~~~p~l~~~~f  159 (234)
                      ..|      ++++++.......-++.+|+-
T Consensus       106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt  135 (473)
T PRK10429        106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLT  135 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHhhhHHhC
Confidence            112      445555554444555666655

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=91.78  E-value=0.049  Score=51.82  Aligned_cols=83  Identities=18%  Similarity=0.145  Sum_probs=0.0

Q ss_pred             CHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-CCChhhHHHHHHHHHH-hcccccccccc------cchHHH
Q 038282           43 TILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-GYPKRGISTFVSLVNI-WNCLGRVVSGF------FRRPLM  114 (234)
Q Consensus        43 ~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G~s~~~aa~~~si~~i-~~~vGRl~~G~------~gr~~~  114 (234)
                      .+++++|||.|..+.++..+.......+..+++.+.|.+ +.++.+++.+..+..+ +.++|-++.|+      .+.++.
T Consensus       297 ~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~  376 (539)
T PF03137_consen  297 ALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA  376 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH
Confidence            357899999998877777666666656777898988874 9999999998888776 56688888888      344444


Q ss_pred             HHHHHHHHHHH
Q 038282          115 LTIILLVSWIG  125 (234)
Q Consensus       115 l~~~~~~~~i~  125 (234)
                      +....++..++
T Consensus       377 ~~~~~v~~~v~  387 (539)
T PF03137_consen  377 AKFCIVVSIVS  387 (539)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=91.53  E-value=0.9  Score=32.40  Aligned_cols=63  Identities=14%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN  132 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~  132 (234)
                      ....+|.+.+|.++|..+++++-|.-.++-.+|-+...+    ..++..+..+++...+..+.+...
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788889999999999999999999999999999887    244556666777776666666553

Note that many members are hypothetical proteins.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=90.81  E-value=4.3  Score=36.65  Aligned_cols=121  Identities=10%  Similarity=0.008  Sum_probs=72.3

Q ss_pred             HHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccchhh----hHhhhhhch
Q 038282           76 QIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFNFGAQ  147 (234)
Q Consensus        76 ~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~l~----l~G~~~G~~  147 (234)
                      .+-++.|+++.+.+.+...--+.+.+-..+.|.    +|||+.-++.+++.++++++-..+.-..++    +-|++....
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            334568999888776666555555555555565    899999888999988888665443222232    556666666


Q ss_pred             hhhhHH-HHHHhhCCCCCCCC-------------------CCc----ccccccc-ccHHHHH-HHHHHHHHHHHHH
Q 038282          148 WPLVFA-ITSEFFGPKNHKEP-------------------EDD----LNCIGVE-CFKLSFI-MTAATLFSAFVSL  197 (234)
Q Consensus       148 ~~~~p~-l~~~~fG~~~~~~~-------------------g~g----~~~d~~g-~Y~~~f~-~a~~~~va~~l~l  197 (234)
                      ++.+=+ ++.|. ..+.+.+-                   ++|    ...|..+ +-..+|. ...+..++.+++.
T Consensus       139 fS~FEsW~V~Eh-~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  139 FSAFESWMVHEH-NKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            655544 34444 33344320                   122    3333333 3578888 7777776666543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.76  E-value=0.88  Score=41.89  Aligned_cols=161  Identities=14%  Similarity=0.076  Sum_probs=96.4

Q ss_pred             CCCCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhhCCChhhHHHHHHHHHHhcccccccccc----cc--hH
Q 038282           40 EDYTILQALFSMDMLILFLATICGVGGTLLAIDNLRQI-GTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FR--RP  112 (234)
Q Consensus        40 ~~~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~g--r~  112 (234)
                      ++.+.++.+++|.-|....+...+..+.-+.-..++.. .+.+..+.-+.+..+--.++...+|-.++|.    ++  |.
T Consensus       259 ~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w  338 (464)
T KOG3764|consen  259 QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW  338 (464)
T ss_pred             cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence            45678999999988876555443332222222344443 3444544335566666677788899999998    55  43


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccch-h-h---hHhhhhhchhhhhHHHHHHhhCCCCCC---CC-----------------
Q 038282          113 LMLTIILLVSWIGHLLIAFNVPGG-L-N---IMGFNFGAQWPLVFAITSEFFGPKNHK---EP-----------------  167 (234)
Q Consensus       113 ~~l~~~~~~~~i~~~ll~~~~~~~-l-~---l~G~~~G~~~~~~p~l~~~~fG~~~~~---~~-----------------  167 (234)
                      ...+.++++.++++...+++.... + .   ..+++.|..-+..-+....+...+|..   .+                 
T Consensus       339 l~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~  418 (464)
T KOG3764|consen  339 LLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI  418 (464)
T ss_pred             HHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhc
Confidence            333445555554444444443322 2 2   556666666677777777888888877   32                 


Q ss_pred             C---CccccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          168 E---DDLNCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       168 g---~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      |   +|.+ ...-+|++.-. .+...++-+-+...++.
T Consensus       419 GP~~gg~i-v~~iGF~wl~~iig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  419 GPTFGGSL-VEAIGFEWLMTIIGILNLIYAPVLLLLRI  455 (464)
T ss_pred             cccccchh-eeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   3333 23456777777 88888877777776654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.51  E-value=3.9  Score=38.27  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=64.5

Q ss_pred             HHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH---hhCCC-hhhHHHHHHHHHHhcccccccccc-------cchHH
Q 038282           45 LQALFSMDMLILFLATICGVGGTLLAIDNLRQIGT---SLGYP-KRGISTFVSLVNIWNCLGRVVSGF-------FRRPL  113 (234)
Q Consensus        45 ~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~---~~G~s-~~~aa~~~si~~i~~~vGRl~~G~-------~gr~~  113 (234)
                      .+.+++++...+...++.....-...+.+.+.-..   .++.. ....+.-.-..+++..++.+.++.       +||+.
T Consensus       234 ~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~  313 (461)
T KOG3098|consen  234 FKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKP  313 (461)
T ss_pred             HHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCc
Confidence            45678887766555544432222222333333221   22332 222333333444455555555554       67777


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc--c--------h--------h----h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          114 MLTIILLVSWIGHLLIAFNVP--G--------G--------L----N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       114 ~l~~~~~~~~i~~~ll~~~~~--~--------~--------l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      .+.+...+-.+++++.....+  .        .        +    + +.|++-...-+..-.++.+++ +++..+
T Consensus       314 ~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~  388 (461)
T KOG3098|consen  314 TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQ  388 (461)
T ss_pred             chhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHH
Confidence            777766666555544433111  0        0        1    1 778888888888888999999 555554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=90.44  E-value=1.8  Score=40.54  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhcccccccccc--------cchHHHHHHHHHHHHHHHHHHHhhcc---------c-hh---h-hHhhhhh
Q 038282           88 ISTFVSLVNIWNCLGRVVSGF--------FRRPLMLTIILLVSWIGHLLIAFNVP---------G-GL---N-IMGFNFG  145 (234)
Q Consensus        88 aa~~~si~~i~~~vGRl~~G~--------~gr~~~l~~~~~~~~i~~~ll~~~~~---------~-~l---~-l~G~~~G  145 (234)
                      .+...++.++...+.-++.++        ++..+.+.+.+++.+++.+++.....         . +.   | +.|++.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            344455555444444444433        33445566777788887766654321         1 11   3 8899999


Q ss_pred             chhhhhHHHHHHhhCCCCCCCC----------C---Cccc----------cc---cccccHHHHH-HHHHHHHHHHHHHH
Q 038282          146 AQWPLVFAITSEFFGPKNHKEP----------E---DDLN----------CI---GVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       146 ~~~~~~p~l~~~~fG~~~~~~~----------g---~g~~----------~d---~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      ...+....++.++-..+..++.          +   +|..          .|   ..+.|...|. .+.++++.+++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888877763          0   1111          11   1235889998 77777666655555


Q ss_pred             HHhhhhhh
Q 038282          199 LVLMTRKF  206 (234)
Q Consensus       199 l~~~~~~~  206 (234)
                      +.++-+|.
T Consensus       478 ~~~~~~k~  485 (500)
T PRK09584        478 TAPKLNRM  485 (500)
T ss_pred             HHHHHHHH
Confidence            54444444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=89.39  E-value=0.012  Score=53.53  Aligned_cols=94  Identities=24%  Similarity=0.271  Sum_probs=53.8

Q ss_pred             HhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHH---h--hccc---h-h
Q 038282           71 IDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIA---F--NVPG---G-L  137 (234)
Q Consensus        71 ~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~---~--~~~~---~-l  137 (234)
                      ....+.+.++.|.++.  -....+.++.+.++.++..+    +|||+.+.....+++++.+.+.   .  ....   . +
T Consensus       273 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  273 FYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445566667788776  22222344555555555545    8999988887777666554442   1  1111   1 1


Q ss_pred             ----h-hHhhhhh-chhhhhHHHHHHhhCCCCCCC
Q 038282          138 ----N-IMGFNFG-AQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       138 ----~-l~G~~~G-~~~~~~p~l~~~~fG~~~~~~  166 (234)
                          + ++.++++ +..++...+++|+|.++..+.
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~  385 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST  385 (451)
T ss_pred             cceeeeecccccccccccccccccccccccccccc
Confidence                1 3334444 333444477899999888775

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=88.36  E-value=0.77  Score=43.04  Aligned_cols=114  Identities=21%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHH
Q 038282           52 DMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHL  127 (234)
Q Consensus        52 ~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~  127 (234)
                      .++.+.+..+--......+..+.+.+.+..|.+... .....+.++.+.++-++..+    +|||..++.+...+.++.+
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            343334333333322333557788888888888553 45555666666666666665    8999999988888887776


Q ss_pred             HHHhh--c--cc--------hh-h----hHhhhhhchhhhhH-HHHHHhhCCCCCCC
Q 038282          128 LIAFN--V--PG--------GL-N----IMGFNFGAQWPLVF-AITSEFFGPKNHKE  166 (234)
Q Consensus       128 ll~~~--~--~~--------~l-~----l~G~~~G~~~~~~p-~l~~~~fG~~~~~~  166 (234)
                      ++...  .  ..        .+ .    ++-.++...+...| .+.+|.|..+..+.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~  431 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK  431 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence            66431  1  00        01 0    22223333333333 46689999888776

>PRK09848 glucuronide transporter; Provisional

Probab=87.75  E-value=3.8  Score=37.36  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             hHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc
Q 038282           73 NLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF  108 (234)
Q Consensus        73 ~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~  108 (234)
                      .+..+.++ .|+++.+++.++++..+.+.+..+++|+
T Consensus        30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~   66 (448)
T PRK09848         30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGR   66 (448)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhee
Confidence            34455555 5999999999999999999999999999

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=87.15  E-value=2.6  Score=39.41  Aligned_cols=29  Identities=17%  Similarity=0.360  Sum_probs=25.1

Q ss_pred             hCCChhhHHHHHHHHHHhccccccccccc
Q 038282           81 LGYPKRGISTFVSLVNIWNCLGRVVSGFF  109 (234)
Q Consensus        81 ~G~s~~~aa~~~si~~i~~~vGRl~~G~~  109 (234)
                      .|.+..+...+..++.++..+|-++.|.+
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggii  306 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGII  306 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHH
Confidence            47888888899999999999999999983

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=86.15  E-value=5.4  Score=37.22  Aligned_cols=172  Identities=19%  Similarity=0.119  Sum_probs=89.1

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI  117 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~  117 (234)
                      .+..+.+++|++....+...+..........-+.....+.|.+......   +.+.....+....+.    .||+.....
T Consensus       309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~---~~~~~~~p~~~~~~~~~~~~gR~~~~~~  385 (521)
T KOG0255|consen  309 ISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFT---LSGLVELPAYFRNGLLLPEFGRRPPLFL  385 (521)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHH---HHHHHHhhHHHHHHHHHHHhCcHHHHHH
Confidence            4577888887533322222222211111222233334445555443332   222244454554455    789999999


Q ss_pred             HHHHHHHHHHHHHh-hcc-c-hh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C---Ccc-cccc
Q 038282          118 ILLVSWIGHLLIAF-NVP-G-GL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E---DDL-NCIG  175 (234)
Q Consensus       118 ~~~~~~i~~~ll~~-~~~-~-~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g---~g~-~~d~  175 (234)
                      ...+.+++++.... ... . .+    . +..++.+..+.+.-...+|++.+......          +   +.. .+..
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~  465 (521)
T KOG0255|consen  386 SLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLL  465 (521)
T ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888777655 222 2 12    1 55666666666667777777776655432          1   111 1111


Q ss_pred             ccccHHHH-H-HHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHhh
Q 038282          176 VECFKLSF-I-MTAATLFSAFVS-LILVLMTRKFYKSDIHQRFR  216 (234)
Q Consensus       176 ~g~Y~~~f-~-~a~~~~va~~l~-l~l~~~~~~~~~~~~~~~~~  216 (234)
                      ..-+...- . .+.+..++.+++ ++++.+..+...+.+.++.|
T Consensus       466 ~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~  509 (521)
T KOG0255|consen  466 RQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN  509 (521)
T ss_pred             hhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence            12122222 2 345555555555 66666666666666666665

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=85.56  E-value=24  Score=33.08  Aligned_cols=77  Identities=22%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhcccccccccc----c-chHHHHHHHHHHHHHHHHHHHhhccc-h-----hh-hHhhhhhchhhhhHHHH
Q 038282           88 ISTFVSLVNIWNCLGRVVSGF----F-RRPLMLTIILLVSWIGHLLIAFNVPG-G-----LN-IMGFNFGAQWPLVFAIT  155 (234)
Q Consensus        88 aa~~~si~~i~~~vGRl~~G~----~-gr~~~l~~~~~~~~i~~~ll~~~~~~-~-----l~-l~G~~~G~~~~~~p~l~  155 (234)
                      .....++..+...+--++.|.    - .||+.+.....+..++..++.+..+. .     ++ +.-.+++.......+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667777777777777776    3 45555555555555565555553332 1     13 66678888888999999


Q ss_pred             HHhhCCCCC
Q 038282          156 SEFFGPKNH  164 (234)
Q Consensus       156 ~~~fG~~~~  164 (234)
                      +++-..++.
T Consensus       152 P~la~~~~~  160 (477)
T PF11700_consen  152 PDLARPEPR  160 (477)
T ss_pred             HhhcCCChh
Confidence            999988888

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=84.79  E-value=13  Score=34.47  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=84.0

Q ss_pred             hhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccc-hh---h-hHh
Q 038282           72 DNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPG-GL---N-IMG  141 (234)
Q Consensus        72 ~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~-~l---~-l~G  141 (234)
                      ..+.+..++ -|.++.+++.+.+....+-.+|...||.    +||++...+.+.+.++.-.+-...... ++   + +.|
T Consensus        98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~  177 (528)
T KOG0253|consen   98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWG  177 (528)
T ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHh
Confidence            344444443 4899999999988888888899999998    899998888777766554443332222 22   2 899


Q ss_pred             hhhhchhhhhHHHHHHhhCCCCCC-CC--------C------CccccccccccHHHHH-HHHHHHHHHHHHHHHHhh---
Q 038282          142 FNFGAQWPLVFAITSEFFGPKNHK-EP--------E------DDLNCIGVECFKLSFI-MTAATLFSAFVSLILVLM---  202 (234)
Q Consensus       142 ~~~G~~~~~~p~l~~~~fG~~~~~-~~--------g------~g~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~---  202 (234)
                      ++.|+ .+...++-.+.-...+.. ..        |      -.+.-...-++++-.. +..-..+.+.+..++...   
T Consensus       178 ~g~gg-~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf  256 (528)
T KOG0253|consen  178 FGVGG-LPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRF  256 (528)
T ss_pred             ccCCC-ccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcch
Confidence            99999 555444433333333322 21        1      1111112236666666 555555555555555321   


Q ss_pred             -----hhhhhHHHHHHHhhhH
Q 038282          203 -----TRKFYKSDIHQRFREA  218 (234)
Q Consensus       203 -----~~~~~~~~~~~~~~~~  218 (234)
                           .+..--|.|+.--|+|
T Consensus       257 ~~~~G~~~kAletL~kiArmN  277 (528)
T KOG0253|consen  257 YLAKGDDYKALETLHKIARMN  277 (528)
T ss_pred             hhhcCChHHHHHHHHHHHHhc
Confidence                 1222235666666655

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=83.54  E-value=5.8  Score=36.43  Aligned_cols=90  Identities=20%  Similarity=0.145  Sum_probs=62.0

Q ss_pred             HHHhhCCChhhHHHHHHHHHHhcccccccccc----c------chHHHHHHHHHHHHHHHHHHHh-----hc-------c
Q 038282           77 IGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----F------RRPLMLTIILLVSWIGHLLIAF-----NV-------P  134 (234)
Q Consensus        77 ~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~------gr~~~l~~~~~~~~i~~~ll~~-----~~-------~  134 (234)
                      +..|++++....+.++++--+..- .|+.+|.    .      .|...+.....++..+..+.+.     ..       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            456788988888888777766544 5999998    1      3334455555554444333322     22       1


Q ss_pred             chh--------h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          135 GGL--------N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       135 ~~l--------~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      ...        | ++|++.+...+..-++++|.-..++.++.
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~  126 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRV  126 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhh
Confidence            111        2 89999999999999999999999999984

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=83.33  E-value=5.7  Score=31.50  Aligned_cols=75  Identities=9%  Similarity=0.024  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHhhccchhh----hHhhhhhchhhhhHHHHHHhhCCCC
Q 038282           89 STFVSLVNIWNCLGRVVSGFFRRPLMLTIILLVSWIGHLLIAFNVPGGLN----IMGFNFGAQWPLVFAITSEFFGPKN  163 (234)
Q Consensus        89 a~~~si~~i~~~vGRl~~G~~gr~~~l~~~~~~~~i~~~ll~~~~~~~l~----l~G~~~G~~~~~~p~l~~~~fG~~~  163 (234)
                      +.+-....+.+.++..+...+|.|+.+.++.+...+-......+....++    +.|++.+..|+....++.+.-..++
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~  122 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET  122 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence            33344444555444444433899999988777766544444433333333    8999999999999888877654443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=82.12  E-value=3.5  Score=37.99  Aligned_cols=134  Identities=12%  Similarity=0.038  Sum_probs=70.2

Q ss_pred             hhHHHHHHh--hCCChhhHHHHHHHHHH-hcccccccccc----cchHHHHHHHHHHHHHHHHHHHhhccch-h-h---h
Q 038282           72 DNLRQIGTS--LGYPKRGISTFVSLVNI-WNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFNVPGG-L-N---I  139 (234)
Q Consensus        72 ~~~~~~~~~--~G~s~~~aa~~~si~~i-~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~~~~~-l-~---l  139 (234)
                      .++.++..+  +|+++.+...-+--... ...+.-+....    ++-|.++++..+...+...++.+..+.. + .   .
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF  103 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            466777654  68887765422111111 11111111111    4556666665555555555555544322 1 1   5


Q ss_pred             HhhhhhchhhhhHHHHHHhhCCCCCCCC----------C------Ccc--ccccccccHHHHH-HHHHHHHHHHHHHHHH
Q 038282          140 MGFNFGAQWPLVFAITSEFFGPKNHKEP----------E------DDL--NCIGVECFKLSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       140 ~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g------~g~--~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~  200 (234)
                      +|++.....+-. +++=..-.++|+.+.          |      -|.  +.....+|....+ ..+...++.++.++++
T Consensus       104 yg~~~a~evay~-sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  104 YGLATAAEVAYY-SYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHHHHHH-HHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            555555533322 232222355666542          1      121  2224678999988 8888888888888888


Q ss_pred             hhhhhh
Q 038282          201 LMTRKF  206 (234)
Q Consensus       201 ~~~~~~  206 (234)
                      .+++..
T Consensus       183 ~~~~S~  188 (412)
T PF01770_consen  183 MPKRSL  188 (412)
T ss_pred             CCCccc
Confidence            765433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11462 putative transporter; Provisional

Probab=81.38  E-value=16  Score=33.85  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=56.4

Q ss_pred             hHHHHH-HhhCCChhhHHHHHHHHHHhcccccccccc--------cchH-HHHHHHHHHHHHHHHHHHhhcc---c--hh
Q 038282           73 NLRQIG-TSLGYPKRGISTFVSLVNIWNCLGRVVSGF--------FRRP-LMLTIILLVSWIGHLLIAFNVP---G--GL  137 (234)
Q Consensus        73 ~~~~~~-~~~G~s~~~aa~~~si~~i~~~vGRl~~G~--------~gr~-~~l~~~~~~~~i~~~ll~~~~~---~--~l  137 (234)
                      ++..+- ...|+++..++.++.+.-+.+++.-++.|+        .||+ .+++...+..+++..+++....   .  ..
T Consensus        31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~  110 (460)
T PRK11462         31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            344444 446999999999999999999999999998        5665 4555566667766666654221   1  12


Q ss_pred             h------hHhhhhhchhhhhHHHHHHhh
Q 038282          138 N------IMGFNFGAQWPLVFAITSEFF  159 (234)
Q Consensus       138 ~------l~G~~~G~~~~~~p~l~~~~f  159 (234)
                      |      ++.+++-..-.-.-++.+++-
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt  138 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVIT  138 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhc
Confidence            2      445555555544445555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.14
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.09
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.88
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.81
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.8
2xut_A	524	Proton/peptide symporter family protein; transport	98.6
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.47
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.42
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.02
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.75
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.4
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.38
2xut_A	524	Proton/peptide symporter family protein; transport	94.46

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.14  E-value=2.9e-10  Score=101.06  Aligned_cols=157  Identities=10%  Similarity=0.036  Sum_probs=119.7

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----c--chHHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----F--RRPLMLT  116 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~--gr~~~l~  116 (234)
                      .++.+|++.+|.+.+..++.......+..+.+.+.++ .|.++.+++.+.++.++++.+|++++|+    +  +|++.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            4678899999998888877766666667788888888 7999999999999999999999999999    6  8888777


Q ss_pred             HHHHHHH-HHHHHHHhhc--cchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------C-------Cc
Q 038282          117 IILLVSW-IGHLLIAFNV--PGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------E-------DD  170 (234)
Q Consensus       117 ~~~~~~~-i~~~ll~~~~--~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------g-------~g  170 (234)
                      ....+.. ++++++....  +...    . +.|++.+...+....++.|.++.++.++.           +       .|
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g  404 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  404 (451)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666655 5555544432  1111    1 77888888888888999999999887763           1       33


Q ss_pred             cccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          171 LNCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      .+.|.. +|...|+ .+++.+++.++.+.+.+
T Consensus       405 ~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          405 YTVDFF-GWDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHSS-CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444 4999999 88888888877766543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.09  E-value=6.8e-11  Score=104.90  Aligned_cols=151  Identities=14%  Similarity=0.103  Sum_probs=117.8

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhh-CCChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQI-GTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML  115 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l  115 (234)
                      .+.++.+|+|.+|...+..++.......+..+.+.+ .++. |.++.+++...++..++..+|+++.|+    ++|++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  328 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            356789999999998888877776666677788888 8886 999999999999999999999999999    7999988


Q ss_pred             HHHHHHHHHHHHHHHhhccch-h--h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------------CCcccccc
Q 038282          116 TIILLVSWIGHLLIAFNVPGG-L--N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------------EDDLNCIG  175 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~~~-l--~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------------g~g~~~d~  175 (234)
                      ....++.+++++++....... .  . +.|++.+..++...++..|.++.+ .++.                ..|.+.|.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          329 AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888777776665533322 2  2 889999999999999988888866 3221                25667777


Q ss_pred             ccccHHHHH-HHHHHHHHH
Q 038282          176 VECFKLSFI-MTAATLFSA  193 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~  193 (234)
                      .|+|+..|+ .+++.++..
T Consensus       408 ~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          408 AGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HTSSGGGGHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHH
Confidence            788999998 655544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.88  E-value=7e-10  Score=98.54  Aligned_cols=148  Identities=11%  Similarity=0.088  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGH  126 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~  126 (234)
                      +.++.+++..++.......+...++.+.++. .++.+.+.+.++..++..++.+++|+    +|||+++.+..++.+++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~  106 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  106 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            3344444444433333333445677788889 99999999999999999999999999    899999999999988888


Q ss_pred             HHHHh----hccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccH
Q 038282          127 LLIAF----NVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFK  180 (234)
Q Consensus       127 ~ll~~----~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~  180 (234)
                      ++...    ..+.. ++    +.|++.|...+...++++|.+..++.++.              +   ++...+..++|+
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~  186 (451)
T 1pw4_A          107 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH  186 (451)
T ss_dssp             HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred             HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            77766    44433 22    88999999999999999999998887752              1   333334444599


Q ss_pred             HHHH-HHHHHHHHHHHHHHH
Q 038282          181 LSFI-MTAATLFSAFVSLIL  199 (234)
Q Consensus       181 ~~f~-~a~~~~va~~l~l~l  199 (234)
                      .+|+ .+.+.++..++.++.
T Consensus       187 ~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          187 AALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             TCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            9999 777777766665444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.81  E-value=1.5e-08  Score=89.71  Aligned_cols=97  Identities=10%  Similarity=-0.045  Sum_probs=82.1

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHH---Hhhccch-hh---
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLI---AFNVPGG-LN---  138 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll---~~~~~~~-l~---  138 (234)
                      .....+.+.++.|.|+.+.+.+.++..++..++.+++|+    +|||+.+....++.+++.++.   ....+.. ++   
T Consensus        45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  124 (438)
T 3o7q_A           45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL  124 (438)
T ss_dssp             HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            345577788889999999999999999999999999999    899999999999988887776   3333322 22   


Q ss_pred             -hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          139 -IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       139 -l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                       +.|++.|...+...++++|.+..++.++
T Consensus       125 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~  153 (438)
T 3o7q_A          125 FIIAAGLGCLETAANPFVTVLGPESSGHF  153 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred             HHHHhhHHHhhhhHHHHHHHHcCchhHHH
Confidence             8999999999999999999999888775

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.80  E-value=1.1e-08  Score=92.17  Aligned_cols=150  Identities=11%  Similarity=0.092  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHhhhhHHhHHhhHHHHHHh------hCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHHHH
Q 038282           51 MDMLILFLATICGVGGTLLAIDNLRQIGTS------LGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTIIL  119 (234)
Q Consensus        51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~------~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~~~  119 (234)
                      +.+|.+++..++.....+.+...++++.++      .|.|..+.+.+.++..++..++.+++|+     +|||+++....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~   92 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG   92 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            356777766666555555555666666654      7999999999999999999999999998     49999999999


Q ss_pred             HHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC--C-----------------CCcccccc
Q 038282          120 LVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE--P-----------------EDDLNCIG  175 (234)
Q Consensus       120 ~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~--~-----------------g~g~~~d~  175 (234)
                      ++.+++.++...+.+.. ++    +.|++.|...+..+++++|.+..++.++  .                 ..+.+.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  171 (491)
T 4aps_A           93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE-  171 (491)
T ss_dssp             HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh-
Confidence            88888887776654433 22    8899999999999999999999887432  1                 1333322 


Q ss_pred             ccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          176 VECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ..+|+.+|+ .+...+++.++.+...+
T Consensus       172 ~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          172 AAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            356999999 77777777666555433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.60  E-value=1.5e-07  Score=85.68  Aligned_cols=148  Identities=12%  Similarity=0.070  Sum_probs=111.3

Q ss_pred             cHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhC------CChhhHHHHHHHHHHhcccccccccc----c-chHHHHHH
Q 038282           50 SMDMLILFLATICGVGGTLLAIDNLRQIGT-SLG------YPKRGISTFVSLVNIWNCLGRVVSGF----F-RRPLMLTI  117 (234)
Q Consensus        50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G------~s~~~aa~~~si~~i~~~vGRl~~G~----~-gr~~~l~~  117 (234)
                      ++.+|.+++..++.....+.+...++.+.+ +.|      .++.+.+.+.++..++..++.+++|+    + |||+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~   90 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW   90 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            346777777777766666556666777655 578      99999999999999999999999999    7 99999999


Q ss_pred             HHHHHHHHHHHHHhhc-cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------------CCcc
Q 038282          118 ILLVSWIGHLLIAFNV-PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------------EDDL  171 (234)
Q Consensus       118 ~~~~~~i~~~ll~~~~-~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------------g~g~  171 (234)
                      ..++.+++.++..... +.. ++    +.|++.|...+..+++++|.+..++.++.                    ..+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~  170 (524)
T 2xut_A           91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL  170 (524)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877776654 322 22    88999999999999999999998887531                    1344


Q ss_pred             ccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          172 NCIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      +.+ ..+|+.+|+ .+++.+++.++.+.
T Consensus       171 l~~-~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          171 LLK-NFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHH-TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             Hhc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence            333 346999998 77776666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.47  E-value=1.6e-07  Score=83.58  Aligned_cols=154  Identities=10%  Similarity=0.002  Sum_probs=98.7

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-C---CChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-G---YPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML  115 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G---~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l  115 (234)
                      .++.+|+|++|.+++..++............+.+.++. +   .+....+...++..+++.++.++.|+    +||++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l  292 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence            35688999999876654433322222223345555443 2   22344567777888888999999998    7889888


Q ss_pred             HHHHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccc
Q 038282          116 TIILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLN  172 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~  172 (234)
                      ....++.+++++++....+.. ++    +.+++.+...+....+++|.++.+..++.                  ..|.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l  372 (417)
T 2cfq_A          293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence            777777766655554332222 21    56777776666677888999887766531                  14455


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHHH
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSLI  198 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~  198 (234)
                      .|.. +|...|+ ++++++++.++.+.
T Consensus       373 ~~~~-g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          373 YESI-GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhc-CcHHHHHHHHHHHHHHHHHHHh
Confidence            5544 4888998 88888887766544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.42  E-value=1e-07  Score=82.88  Aligned_cols=138  Identities=9%  Similarity=0.135  Sum_probs=103.8

Q ss_pred             HHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHh
Q 038282           56 LFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAF  131 (234)
Q Consensus        56 l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~  131 (234)
                      +++..++...........++.+.++.|.|+.+.+.+.++..+...++.+++|+    +|||+.+....++.+++.++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence            33444444444444456677888889999999999999999999999999999    79999999888888887777665


Q ss_pred             hccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHH
Q 038282          132 NVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAA  188 (234)
Q Consensus       132 ~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~  188 (234)
                      ..+.. ++    +.|++.|...+...+++.|.+..++.++.              +   ++.+.+ ..+|+..|+ .+..
T Consensus        85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~  163 (375)
T 2gfp_A           85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MWNWRACYLFLLVL  163 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hccHHHHHHHHHHH
Confidence            43322 22    88999999999999999999998888873              1   233322 236888888 7776


Q ss_pred             HHHHHH
Q 038282          189 TLFSAF  194 (234)
Q Consensus       189 ~~va~~  194 (234)
                      .++..+
T Consensus       164 ~~~~~~  169 (375)
T 2gfp_A          164 CAGVTF  169 (375)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            666555

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.02  E-value=1.1e-05  Score=72.47  Aligned_cols=81  Identities=19%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHh------------------hccch-hh----
Q 038282           86 RGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAF------------------NVPGG-LN----  138 (234)
Q Consensus        86 ~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~------------------~~~~~-l~----  138 (234)
                      .+.+++.|...++..+|.+++|+    +|||+++.++.++..++.++..+                  +.... ++    
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            34567778888999999999999    89999999998888887665542                  11111 21    


Q ss_pred             hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          139 IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      +.|++.|+..+..|.+++|....++.+.
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~  162 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGK  162 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence            8899999999999999999999988875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.97  E-value=8e-07  Score=77.18  Aligned_cols=124  Identities=17%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-cchHH-HHHHH
Q 038282           42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-FRRPL-MLTII  118 (234)
Q Consensus        42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr~~-~l~~~  118 (234)
                      .+.++.+|+|++|.+.+..++.......+....+.+.++ .|.++.+++.+.++.+++..+++++.|+ .+|.. .+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  269 (375)
T 2gfp_A          190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS  269 (375)
T ss_dssp             TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999998887776665555555666667666 7899999999999999999999999999 33332 22222


Q ss_pred             HHH-HHHHHH--HHHh-hc-cch-h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282          119 LLV-SWIGHL--LIAF-NV-PGG-L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKE  166 (234)
Q Consensus       119 ~~~-~~i~~~--ll~~-~~-~~~-l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~  166 (234)
                      ... ..++..  .... .. +.. .   . +.|++.|...+...+++.|.++ ++.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~  326 (375)
T 2gfp_A          270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGT  326 (375)
T ss_dssp             HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccch
Confidence            222 222222  1111 11 111 1   1 8899999999999999999997 66664

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.75  E-value=3.7e-05  Score=68.99  Aligned_cols=147  Identities=13%  Similarity=0.037  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHH-----HHHHHH
Q 038282           53 MLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT-----IILLVS  122 (234)
Q Consensus        53 F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~-----~~~~~~  122 (234)
                      ++.+++..++...........++.+.++ .+.+....+...++.++...++.++.|+    ++||+...     ...++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~  364 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA  364 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            4444444433333333344556666666 4666556677777888888888888888    66654332     555555


Q ss_pred             HHHHHHHHhhc---------cchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcc
Q 038282          123 WIGHLLIAFNV---------PGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDL  171 (234)
Q Consensus       123 ~i~~~ll~~~~---------~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~  171 (234)
                      +++++++....         +...    + +.|++.+...+....++.|.++.++.++.                 ..+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          365 GLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             HHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554443311         1111    2 88999999899999999999999988874                 1333


Q ss_pred             ccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          172 NCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ..|  .+|...|. .+++++++.++.+...+
T Consensus       445 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          445 YNA--KSEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             GGG--SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             Hhc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332  35778888 77777777776665443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.40  E-value=0.00015  Score=64.22  Aligned_cols=78  Identities=9%  Similarity=-0.088  Sum_probs=63.3

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      +.+|+|+||.+....++.......+...++.+.++ .|.|+.+.+.+.++..++..++++++|+    +|||+.+.....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~   81 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            46899999988877666554444455678887765 7999999999999999999999999999    899998887666


Q ss_pred             HHH
Q 038282          121 VSW  123 (234)
Q Consensus       121 ~~~  123 (234)
                      +.+
T Consensus        82 ~~~   84 (417)
T 2cfq_A           82 GML   84 (417)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.38  E-value=0.00062  Score=60.83  Aligned_cols=154  Identities=14%  Similarity=0.067  Sum_probs=86.7

Q ss_pred             HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh---ccch---hh-
Q 038282           70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN---VPGG---LN-  138 (234)
Q Consensus        70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~---~~~~---l~-  138 (234)
                      +..+.+.+.+..+.+.........+.++...++.++.++    +|||+.+......+.++++.+...   ....   +. 
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  375 (491)
T 4gc0_A          296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  375 (491)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            445566677778888877777777888888888888888    799998888777777766555332   1111   11 


Q ss_pred             --hHhhhhh-chhhhhHHHHHHhhCCCCCCCC----------C---Ccc----ccc-----cccccHHHHH-HHHHHHHH
Q 038282          139 --IMGFNFG-AQWPLVFAITSEFFGPKNHKEP----------E---DDL----NCI-----GVECFKLSFI-MTAATLFS  192 (234)
Q Consensus       139 --l~G~~~G-~~~~~~p~l~~~~fG~~~~~~~----------g---~g~----~~d-----~~g~Y~~~f~-~a~~~~va  192 (234)
                        ++..+++ +..++...+++|+|.++..++.          +   .+.    +.+     ....+..+|+ .+++++++
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~  455 (491)
T 4gc0_A          376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA  455 (491)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence              2222222 2334556788999998877652          0   111    100     1123445677 88888888


Q ss_pred             HHHHHHH-HhhhhhhhH--HHHHHHhhhHHhhcc
Q 038282          193 AFVSLIL-VLMTRKFYK--SDIHQRFREAAAKSA  223 (234)
Q Consensus       193 ~~l~l~l-~~~~~~~~~--~~~~~~~~~~~~~~~  223 (234)
                      +++.++. +.++.|...  |.++++++.|+++++
T Consensus       456 ~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~~~  489 (491)
T 4gc0_A          456 ALFMWKFVPETKGKTLEELEALWEPETKKTQQTA  489 (491)
T ss_dssp             HHHHHHHCCCCTTCCHHHHGGGTC----------
T ss_pred             HHHHHheecCCCCCCHHHHHHHhCCCCcccccCC
Confidence            8776554 433444332  234444444444443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.46  E-value=0.029  Score=50.36  Aligned_cols=29  Identities=3%  Similarity=-0.188  Sum_probs=26.1

Q ss_pred             hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282          139 IMGFNFGAQWPLVFAITSEFFGPKNHKEP  167 (234)
Q Consensus       139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~~  167 (234)
                      +.|++.+...+....++.|.++.++.++.
T Consensus       414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~  442 (524)
T 2xut_A          414 LLTFGEVLVSATGLEFAYSQAPKAMKGTI  442 (524)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHCCTTCCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHhHH
Confidence            88999999999999999999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.9
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.86
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.69
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=3.6e-10  Score=97.53  Aligned_cols=147  Identities=13%  Similarity=0.169  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhhhhHHh---HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHH
Q 038282           54 LILFLATICGVGGTLL---AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGH  126 (234)
Q Consensus        54 ~~l~~~~~~~~~~~~~---~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~  126 (234)
                      |.+++..++.....+.   .+....++.++.|+|+.+.+++.+...++..++.+++|+    +|||+++....++.+++.
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~  103 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  103 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            5445444443333222   233445666778999999999999999999999999999    899999999888888777


Q ss_pred             HHHHhhc----cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------C-------CccccccccccH
Q 038282          127 LLIAFNV----PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------E-------DDLNCIGVECFK  180 (234)
Q Consensus       127 ~ll~~~~----~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------g-------~g~~~d~~g~Y~  180 (234)
                      ++.....    ... ++    +.|++.|...+....+++|.+..++.++.          |       .+...+..++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~  183 (447)
T d1pw4a_         104 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH  183 (447)
T ss_dssp             HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred             hhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhccc
Confidence            6665421    112 22    88999999999999999999999888753          1       223344456888


Q ss_pred             HHHH-HHHHHHHHHHHHHHHH
Q 038282          181 LSFI-MTAATLFSAFVSLILV  200 (234)
Q Consensus       181 ~~f~-~a~~~~va~~l~l~l~  200 (234)
                      ..|+ .+.+.++..++.+...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         184 AALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhhhhHHHHHHHHHHhc
Confidence            8888 7766666666555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=7.6e-09  Score=89.02  Aligned_cols=157  Identities=11%  Similarity=0.030  Sum_probs=107.8

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHH-
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTI-  117 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~-  117 (234)
                      .++.++++.+|.+....++..........+.+.+.++ .|.+..+.+...++..+.+.+|+++.|+    ++|++.... 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            4678899999998887777766666666777777765 6999999999999999999999999999    444332222 


Q ss_pred             --HHHHHHHHHHHHHhhcc-c-hh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCc
Q 038282          118 --ILLVSWIGHLLIAFNVP-G-GL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDD  170 (234)
Q Consensus       118 --~~~~~~i~~~ll~~~~~-~-~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g  170 (234)
                        ...+..++..++..... . .+    . +.|++.++..+....++.|.++.+..++.                  ..|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g  401 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  401 (447)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22222222222222111 1 11    1 77888888888889999999998887752                  134


Q ss_pred             cccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282          171 LNCIGVECFKLSFI-MTAATLFSAFVSLILVL  201 (234)
Q Consensus       171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~  201 (234)
                      ++.|.. +|+..|+ .+++++++.++...+..
T Consensus       402 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         402 YTVDFF-GWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHSS-CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444 4778888 88877777777666544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.4e-08  Score=85.03  Aligned_cols=162  Identities=10%  Similarity=-0.023  Sum_probs=109.4

Q ss_pred             HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh----hCCChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282           44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS----LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML  115 (234)
Q Consensus        44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~----~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l  115 (234)
                      ..+..+++..+.+....++..............+...    .+.+........+...+...++.++.|+    .++++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH
T ss_pred             cccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch
Confidence            4556666666665555444333332222222233222    2444556677778888888999999998    6788888


Q ss_pred             HHHHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccc
Q 038282          116 TIILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLN  172 (234)
Q Consensus       116 ~~~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~  172 (234)
                      ....++.+++.+++....+.. .+    +.|++.|...+...+++.|.++.++.++.                  ..|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877777666543332 21    88999999999999999999999887752                  14555


Q ss_pred             cccccccHHHHH-HHHHHHHHHHHHHHHHhhhhhh
Q 038282          173 CIGVECFKLSFI-MTAATLFSAFVSLILVLMTRKF  206 (234)
Q Consensus       173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~~~  206 (234)
                      .|.. +|+.+|+ .+++++++.++.++..++.++.
T Consensus       373 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         373 YESI-GFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHH-CHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHH-CHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            5554 4888898 8888888887777665554444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1.2e-07  Score=79.23  Aligned_cols=86  Identities=8%  Similarity=-0.105  Sum_probs=68.8

Q ss_pred             HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282           46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGT-SLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL  120 (234)
Q Consensus        46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~  120 (234)
                      +.+|||.||.+.+..++...........++.+.+ +.|.|+.+.+.+.++..+...++.+++|+    +|||+.+.....
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~   81 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred             CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            4689999999988887765554445566776665 47999999999999999999999999999    899998888777


Q ss_pred             HHHHHHHHHHh
Q 038282          121 VSWIGHLLIAF  131 (234)
Q Consensus       121 ~~~i~~~ll~~  131 (234)
                      ...++..++..
T Consensus        82 ~~~~~~~~~~~   92 (417)
T d1pv7a_          82 GMLVMFAPFFI   92 (417)
T ss_dssp             HHHHTHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77665555443