Citrus Sinensis ID: 038320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
Protein Sequence
MANNQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccEEccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHcccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccEEEccccccccccHHHHHHHHccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccEEEccccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccHHHcccccccEEEEcccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccccccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccc
Coil and Loop (DISEMBL)
MANNQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKAsvtdpsgrlsswtgedcckwegvicdnstgkvvqlklrspeipdsftdngttyqlegeispsvldlkhlnyldlslnnfrgsripnflgSLEKLRYLNlsgasfagnippsfgnlsslqildlNTFYYSSLESDDVEWLSRLSSlqylnlegvdlskagsswvqatnmlpslselhlpacglfefpplsvvnfsSLLFLdlssndfnssiPQWLLNISKLAHLDlsannlqgnipdaFANMTslreldlsensliggqipkdlgslcnlwdldlsgndldgEIIEFVDRLSKCansslesldlgqnnlggflpnslgqleNLKILQLWGNlfrgsipesigNLSSLRELYLhnnlmdgtipkslgkLSHLVVLdisgnpwiGLVTEVHFSKLKNLKELHIAKyslaprltlVFNVSPEW
Flexible Loop (DISEMBL)
MANNQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKasvtdpsgrlsswTGEDCCKWEGVICDNSTGKVVQLKlrspeipdsftdnGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAkyslaprltlVFNVSPEW
Low Complexity Region (SEG)
MANNQYIQPvflvllsgflffnsvRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPlsvvnfssllfldlssndfnssIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW
Disordered region (IsUnstruct)
*****YIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNV****
Disordered Region (DISOPRED)
******I*PVFLVLLSGFLFFNSVRLST********QNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW
Disordered Region (DISEMBL)
MANNQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASV*********WTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW
Disordered Region (DISPRO)
***NQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANNQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	467	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	no	no	0.845	0.383	0.323	1e-41
O82318	960	Probably inactive leucine	no	no	0.805	0.391	0.344	1e-39
Q42371	976	LRR receptor-like serine/	no	no	0.867	0.414	0.310	1e-38
Q9LP24	1120	Probable leucine-rich rep	no	no	0.749	0.312	0.359	2e-38
C0LGW6	966	LRR receptor-like serine/	no	no	0.773	0.373	0.316	2e-38
Q9FL28	1173	LRR receptor-like serine/	no	no	0.850	0.338	0.324	6e-38
Q9FL51	872	Probably inactive leucine	no	no	0.725	0.388	0.351	9e-37
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.822	0.373	0.287	9e-36
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.785	0.362	0.325	4e-35
Q9LRT1	1016	Probably inactive leucine	no	no	0.781	0.359	0.320	7e-35

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  171 bits (433), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/455 (32%), Positives = 217/455 (47%), Gaps = 60/455 (13%)

Query: 37  QNEKEALLKIKASVTDPSGR--LSSWTGED-CCKWEGVICDNSTGKVVQLKLRSPEIPDS 93
           + + +ALL+ K+ V++ + R  L+SW      C W GV C     +V+ L L        
Sbjct: 29  ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGG------ 82

Query: 94  FTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFA 153
                  ++L G ISPS+ +L  L  L+L+ N+F GS IP  +G L +L+YLN+S     
Sbjct: 83  -------FKLTGVISPSIGNLSFLRLLNLADNSF-GSTIPQKVGRLFRLQYLNMSYNLLE 134

Query: 154 GNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAG--SSWV 211
           G IP S  N S L  +DL++ +       ++  LS+L+ L        DLSK     ++ 
Sbjct: 135 GRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAIL--------DLSKNNLTGNFP 186

Query: 212 QATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271
            +   L SL +L      +    P  V   + ++F  ++ N F+   P  L NIS L  L
Sbjct: 187 ASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESL 246

Query: 272 DLSANNLQGN-------------------------IPDAFANMTSLRELDLSENSLIGGQ 306
            L+ N+  GN                         IP   AN++SL   D+S N L  G 
Sbjct: 247 SLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYL-SGS 305

Query: 307 IPKDLGSLCNLWDLDLS---GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS 363
           IP   G L NLW L +      +     +EF+  ++ C  + LE LD+G N LGG LP S
Sbjct: 306 IPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANC--TQLEYLDVGYNRLGGELPAS 363

Query: 364 LGQLE-NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD 422
           +  L   L  L L  NL  G+IP  IGNL SL+EL L  N++ G +P S GKL +L V+D
Sbjct: 364 IANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVD 423

Query: 423 ISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL 457
           +  N   G +   +F  +  L++LH+   S   R+
Sbjct: 424 LYSNAISGEIPS-YFGNMTRLQKLHLNSNSFHGRI 457

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 207/418 (49%), Gaps = 42/418 (10%)

Query: 38  NEKEALLKIKASVTDPSGRLSSWT---GEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSF 94
           NE E LL  K+S+ DP   LSSW+     D C W GV+C+N   +VV L L         
Sbjct: 30  NELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNN-ISRVVSLDL--------- 79

Query: 95  TDNGTTYQLEGEI-SPSVLDLKHLNYLDLSLNNFRGSRIPN--FLGSLEKLRYLNLSGAS 151
               +   + G+I + +   L  L  ++LS NN  G  IP+  F  S   LRYLNLS  +
Sbjct: 80  ----SGKNMSGQILTAATFRLPFLQTINLSNNNLSGP-IPHDIFTTSSPSLRYLNLSNNN 134

Query: 152 FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWV 211
           F+G+IP  F  L +L  LDL+   ++    +D+      S+L+ L+L G  L+     ++
Sbjct: 135 FSGSIPRGF--LPNLYTLDLSNNMFTGEIYNDI---GVFSNLRVLDLGGNVLTGHVPGYL 189

Query: 212 QATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271
                L  L  L L +  L    P+ +    +L ++ L  N+ +  IP  +  +S L HL
Sbjct: 190 GN---LSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHL 246

Query: 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
           DL  NNL G IP +  ++  L  + L +N L  GQIP  + SL NL  LD S N L GEI
Sbjct: 247 DLVYNNLSGPIPPSLGDLKKLEYMFLYQNKL-SGQIPPSIFSLQNLISLDFSDNSLSGEI 305

Query: 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNL 391
            E V ++      SLE L L  NNL G +P  +  L  LK+LQLW N F G IP ++G  
Sbjct: 306 PELVAQMQ-----SLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKH 360

Query: 392 SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN-------PWIGLVTEVHFSKLKN 442
           ++L  L L  N + G +P +L    HL  L +  N       P +G+   +   +L+N
Sbjct: 361 NNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQN 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 226/509 (44%), Gaps = 104/509 (20%)

Query: 13  VLLSGFLFFNSVRLSTCQSIARCVQNEKEA-LLKIKASVTDPSGRLSSWT---GEDCCKW 68
           ++L GFLF        C S+   V +E+ A LL+IK S  D +  L  WT     D C W
Sbjct: 7   IVLLGFLF--------CLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVW 58

Query: 69  EGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFR 128
            GV C+N T  VV L L             +   L+GEISP++ DLK L  +DL  N   
Sbjct: 59  RGVSCENVTFNVVALNL-------------SDLNLDGEISPAIGDLKSLLSIDLRGNRLS 105

Query: 129 GSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQ--------------------- 167
           G +IP+ +G    L+ L+LS    +G+IP S   L  L+                     
Sbjct: 106 G-QIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIP 164

Query: 168 ---ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG--------VDLSKAGSSW---VQA 213
              ILDL     S      + W      LQYL L G         DL +    W   V+ 
Sbjct: 165 NLKILDLAQNKLSGEIPRLIYW---NEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRN 221

Query: 214 TNMLPSLSELHLPACGLFEFPPLSV----------VNFSSLLFLDLSSNDFNSSIPQWLL 263
            ++  S+ E  +  C  F+   LS           + F  +  L L  N  +  IP  + 
Sbjct: 222 NSLTGSIPET-IGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSVIG 280

Query: 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG------------------- 304
            +  LA LDLS N L G+IP    N+T   +L L  N L G                   
Sbjct: 281 LMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELND 340

Query: 305 ----GQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360
               G IP +LG L +L+DL+++ NDL+G I    D LS C N  L SL++  N   G +
Sbjct: 341 NHLTGHIPPELGKLTDLFDLNVANNDLEGPI---PDHLSSCTN--LNSLNVHGNKFSGTI 395

Query: 361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV 420
           P +  +LE++  L L  N  +G IP  +  + +L  L L NN ++G IP SLG L HL+ 
Sbjct: 396 PRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLK 455

Query: 421 LDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           +++S N   G+V    F  L+++ E+ ++
Sbjct: 456 MNLSRNHITGVVPG-DFGNLRSIMEIDLS 483

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 189/384 (49%), Gaps = 34/384 (8%)

Query: 39  EKEALLKIKASVTDPSGRLSSW-------TGEDCCKWEGVICDNSTGKVVQLKLRSPEIP 91
           E  ALLK K++ T+ S +LSSW       T   C  W GV C NS G + +L L +  I 
Sbjct: 33  EANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTNTGIE 90

Query: 92  DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS 151
            +F D               + L +L Y+DLS+N   G+  P F G+L KL Y +LS   
Sbjct: 91  GTFQDF------------PFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLSTNH 137

Query: 152 FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWV 211
             G I PS GNL +L +L L+  Y +S+   ++  +  ++ L       +  +K   S  
Sbjct: 138 LTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDL------ALSQNKLTGSIP 191

Query: 212 QATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271
            +   L +L  L+L    L    P  + N  S+  L LS N    SIP  L N+  L  L
Sbjct: 192 SSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVL 251

Query: 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
            L  N L G IP    NM S+  L LS+N L G  IP  LG+L NL  L L  N L G I
Sbjct: 252 YLYENYLTGVIPPEIGNMESMTNLALSQNKLTG-SIPSSLGNLKNLTLLSLFQNYLTGGI 310

Query: 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNL 391
              +  +      S+  L+L  N L G +P+SLG L+NL IL L+ N   G IP  +GN+
Sbjct: 311 PPKLGNIE-----SMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM 365

Query: 392 SSLRELYLHNNLMDGTIPKSLGKL 415
            S+ +L L+NN + G+IP S G L
Sbjct: 366 ESMIDLQLNNNKLTGSIPSSFGNL 389

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 197/424 (46%), Gaps = 63/424 (14%)

Query: 10  VFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWT---GEDCC 66
           V  + + GF+ F          +A  + NE +AL+ IK S ++    L  W      D C
Sbjct: 9   VLSLAMVGFMVF---------GVASAMNNEGKALMAIKGSFSNLVNMLLDWDDVHNSDLC 59

Query: 67  KWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN 126
            W GV CDN +  VV L L S               L GEISP++ DL++L  +DL  N 
Sbjct: 60  SWRGVFCDNVSYSVVSLNLSS-------------LNLGGEISPAIGDLRNLQSIDLQGNK 106

Query: 127 FRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEW 186
             G +IP+ +G+   L YL+LS     G+IP S   L  L+ L+L     + L       
Sbjct: 107 LAG-QIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKN---NQLTGPVPAT 162

Query: 187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLF 246
           L+++ +L+ L+L G  L+   S  +    +L                            +
Sbjct: 163 LTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQ---------------------------Y 195

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           L L  N    ++   +  ++ L + D+  NNL G IP++  N TS + LD+S N  I G+
Sbjct: 196 LGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQ-ITGE 254

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ 366
           IP ++G L  +  L L GN L G I E +  +      +L  LDL  N L G +P  LG 
Sbjct: 255 IPYNIGFL-QVATLSLQGNRLTGRIPEVIGLMQ-----ALAVLDLSDNELVGPIPPILGN 308

Query: 367 LENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
           L     L L GN+  G IP  +GN+S L  L L++N + GTIP  LGKL  L  L+++ N
Sbjct: 309 LSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANN 368

Query: 427 PWIG 430
             +G
Sbjct: 369 RLVG 372

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  159 bits (401), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 212/450 (47%), Gaps = 53/450 (11%)

Query: 5   QYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVT-DPSGRLSSWT-- 61
           + +   FL+L   F FF  + L+      +  + E EAL   K  ++ DP G LS WT  
Sbjct: 2   KLLSKTFLILTLTFFFF-GIALA-----KQSFEPEIEALKSFKNGISNDPLGVLSDWTII 55

Query: 62  -GEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYL 120
                C W G+ CD STG VV + L                QLEG +SP++ +L +L  L
Sbjct: 56  GSLRHCNWTGITCD-STGHVVSVSLLEK-------------QLEGVLSPAIANLTYLQVL 101

Query: 121 DLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180
           DL+ N+F G +IP  +G L +L  L L    F+G+IP     L ++  LDL     ++L 
Sbjct: 102 DLTSNSFTG-KIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLR----NNLL 156

Query: 181 SDDV-EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
           S DV E + + SSL  +   G D +       +    L  L         L    P+S+ 
Sbjct: 157 SGDVPEEICKTSSLVLI---GFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIG 213

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
             ++L  LDLS N     IP+   N+  L  L L+ N L+G+IP    N +SL +L+L +
Sbjct: 214 TLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYD 273

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN---------------- 343
           N L  G+IP +LG+L  L  L +  N L   I   + RL++  +                
Sbjct: 274 NQLT-GKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEI 332

Query: 344 ---SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
               SLE L L  NN  G  P S+  L NL +L +  N   G +P  +G L++LR L  H
Sbjct: 333 GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAH 392

Query: 401 NNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430
           +NL+ G IP S+   + L +LD+S N   G
Sbjct: 393 DNLLTGPIPSSISNCTGLKLLDLSHNQMTG 422

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score =  155 bits (391), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 190/393 (48%), Gaps = 54/393 (13%)

Query: 43  LLKIKASVTDPSGRLSSW---TGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGT 99
           LL+ KAS  DP G LS W   +    C W G+ C            R+P +  S + N  
Sbjct: 36  LLRFKASFDDPKGSLSGWFNTSSSHHCNWTGITCT-----------RAPTLYVS-SINLQ 83

Query: 100 TYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS 159
           +  L GEIS S+ DL +L +LDLSL NF    IP  L     L  LNLS     G IP  
Sbjct: 84  SLNLSGEISDSICDLPYLTHLDLSL-NFFNQPIPLQLSRCVTLETLNLSSNLIWGTIPDQ 142

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219
               SSL+++D ++ +   +  +D   L  L +LQ LNL        GS+ +  T ++P 
Sbjct: 143 ISEFSSLKVIDFSSNHVEGMIPED---LGLLFNLQVLNL--------GSNLL--TGIVP- 188

Query: 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF-NSSIPQWLLNISKLAHLDLSANNL 278
                 PA G            S L+ LDLS N +  S IP +L  + KL  L L  +  
Sbjct: 189 ------PAIG----------KLSELVVLDLSENSYLVSEIPSFLGKLDKLEQLLLHRSGF 232

Query: 279 QGNIPDAFANMTSLRELDLSENSLIGGQIPKDLG-SLCNLWDLDLSGNDLDGEIIEFVDR 337
            G IP +F  +TSLR LDLS N+L  G+IP+ LG SL NL  LD+S N L G     +  
Sbjct: 233 HGEIPTSFVGLTSLRTLDLSLNNL-SGEIPRSLGPSLKNLVSLDVSQNKLSGSFPSGI-- 289

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397
              C+   L +L L  N   G LPNS+G+  +L+ LQ+  N F G  P  +  L  ++ +
Sbjct: 290 ---CSGKRLINLSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKII 346

Query: 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430
              NN   G +P+S+   S L  ++I  N + G
Sbjct: 347 RADNNRFTGQVPESVSLASALEQVEIVNNSFSG 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  151 bits (382), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 205/448 (45%), Gaps = 64/448 (14%)

Query: 11  FLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGED------ 64
           FL    GF  F  V   T Q+      +E+E LL  K+ + DPS  L  W   +      
Sbjct: 8   FLFYYIGFALFPFVSSETFQN------SEQEILLAFKSDLFDPSNNLQDWKRPENATTFS 61

Query: 65  ---CCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTY-----------QLEGEISPS 110
               C W GV CD + G V +L L +  +  + +D   ++             E  +  S
Sbjct: 62  ELVHCHWTGVHCD-ANGYVAKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKS 120

Query: 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILD 170
           + +L  L  +D+S+N+F G+  P  LG    L ++N S  +F+G +P   GN ++L++LD
Sbjct: 121 LSNLTSLKVIDVSVNSFFGT-FPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLD 179

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
               Y+   E         L +L++L L G +                            
Sbjct: 180 FRGGYF---EGSVPSSFKNLKNLKFLGLSGNNFGGK------------------------ 212

Query: 231 FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
               P  +   SSL  + L  N F   IP+    +++L +LDL+  NL G IP +   + 
Sbjct: 213 ---VPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLK 269

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
            L  + L +N L G ++P++LG + +L  LDLS N + GEI   V  L      +L+ L+
Sbjct: 270 QLTTVYLYQNRLTG-KLPRELGGMTSLVFLDLSDNQITGEIPMEVGELK-----NLQLLN 323

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           L +N L G +P+ + +L NL++L+LW N   GS+P  +G  S L+ L + +N + G IP 
Sbjct: 324 LMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPS 383

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFS 438
            L    +L  L +  N + G + E  FS
Sbjct: 384 GLCYSRNLTKLILFNNSFSGQIPEEIFS 411

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 143/440 (32%), Positives = 201/440 (45%), Gaps = 73/440 (16%)

Query: 38  NEKEALLKIKASVTDPSGRLSSWT---GEDCCKWEGVICDNSTGKVVQLKLR----SPEI 90
           NE   LL +K+++ DP   L  W      D C W GV C NS G V +L L     + +I
Sbjct: 29  NELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRC-NSNGNVEKLDLAGMNLTGKI 87

Query: 91  PDSFTD-----------NGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSL 139
            DS +            NG    L   I P       L  +D+S N+F GS    FL S 
Sbjct: 88  SDSISQLSSLVSFNISCNGFESLLPKSIPP-------LKSIDISQNSFSGSL---FLFSN 137

Query: 140 EKLR--YLNLSGASFAGNIPPSFGNLSSLQILDLN-TFYYSSLESDDVEWLSRLSSLQYL 196
           E L   +LN SG + +GN+    GNL SL++LDL   F+  SL S        L  L++L
Sbjct: 138 ESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSS----FKNLQKLRFL 193

Query: 197 NLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP---PLSVVNFSSLLFLDLSSND 253
            L G +L+       +  ++L  L  L     G  EF    P    N +SL +LDL+   
Sbjct: 194 GLSGNNLTG------ELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGK 247

Query: 254 FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG--------- 304
            +  IP  L  +  L  L L  NN  G IP    ++T+L+ LD S+N+L G         
Sbjct: 248 LSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKL 307

Query: 305 --------------GQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
                         G IP  + SL  L  L+L  N L GE+   + +     NS L+ LD
Sbjct: 308 KNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGK-----NSPLQWLD 362

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           +  N+  G +P++L    NL  L L+ N F G IP ++    SL  + + NNL++G+IP 
Sbjct: 363 VSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPI 422

Query: 411 SLGKLSHLVVLDISGNPWIG 430
             GKL  L  L+++GN   G
Sbjct: 423 GFGKLEKLQRLELAGNRLSG 442

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  149 bits (375), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 203/415 (48%), Gaps = 50/415 (12%)

Query: 42  ALLKIKASVTDPSGRLSSWTGED--CCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGT 99
            L+  K+ + DP   L SWT +D   C W  V C+  T +V++L L              
Sbjct: 39  GLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSLDG------------ 86

Query: 100 TYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS 159
              L G+I+  +  L+ L  L LS NNF G+   N L +   L+ L+LS  + +G IP S
Sbjct: 87  -LALTGKINRGIQKLQRLKVLSLSNNNFTGNI--NALSNNNHLQKLDLSHNNLSGQIPSS 143

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYL-----NLEG-------------- 200
            G+++SLQ LDL    +S   SDD+   +  SSL+YL     +LEG              
Sbjct: 144 LGSITSLQHLDLTGNSFSGTLSDDL--FNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNS 201

Query: 201 VDLSK----AGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS 256
           ++LS+       S+V     L  L  L L +  L    PL +++  +L  L L  N F+ 
Sbjct: 202 LNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQFSG 261

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCN 316
           ++P  +     L  +DLS+N+  G +P     + SL   D+S N+L+ G  P  +G +  
Sbjct: 262 ALPSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVS-NNLLSGDFPPWIGDMTG 320

Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW 376
           L  LD S N+L G++   +  L      SL+ L+L +N L G +P SL   + L I+QL 
Sbjct: 321 LVHLDFSSNELTGKLPSSISNL-----RSLKDLNLSENKLSGEVPESLESCKELMIVQLK 375

Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKL-SHLVVLDISGNPWIG 430
           GN F G+IP+   +L  L+E+    N + G+IP+   +L   L+ LD+S N   G
Sbjct: 376 GNDFSGNIPDGFFDL-GLQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTG 429

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.944	0.445	0.591	1e-136
359488591	981	PREDICTED: probable leucine-rich repeat	0.944	0.449	0.561	1e-135
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.918	0.447	0.601	1e-134
225451409	1007	PREDICTED: leucine-rich repeat receptor	0.993	0.460	0.562	1e-133
359488633	981	PREDICTED: LRR receptor-like serine/thre	0.952	0.453	0.560	1e-133
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.991	0.456	0.558	1e-129
359488635	1322	PREDICTED: leucine-rich repeat receptor	0.955	0.337	0.556	1e-128
296090228	896	unnamed protein product [Vitis vinifera]	0.903	0.470	0.565	1e-128
359488637	988	PREDICTED: probable leucine-rich repeat	0.959	0.453	0.542	1e-128
147770493	1024	hypothetical protein VITISV_019847 [Viti	0.993	0.453	0.560	1e-128

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/448 (59%), Positives = 334/448 (74%), Gaps = 7/448 (1%)

Query: 23  SVRLSTCQSIAR--CVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKV 80
           +++LS+C +     C++ EKEALLK K  +TDPSGRLSSW GEDCCKW GV C+N TG+V
Sbjct: 22  TIKLSSCDANQNMDCLEVEKEALLKFKQGLTDPSGRLSSWVGEDCCKWRGVSCNNRTGRV 81

Query: 81  VQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLE 140
           ++LKL +P  P+S   +GT  +L GEI+PS+L LK+LNYLDLS+NNF G  IP F+GSL 
Sbjct: 82  IKLKLGNP-FPNSLEGDGTASELGGEINPSLLSLKYLNYLDLSMNNFGGMEIPKFIGSLG 140

Query: 141 KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG 200
           KLRYLNLSGASF G IPP+  NLS+L+ LDLNT Y      + +EWLS LSSL+YLNL G
Sbjct: 141 KLRYLNLSGASFGGMIPPNIANLSNLRYLDLNT-YSIEPNKNGLEWLSGLSSLKYLNLGG 199

Query: 201 VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP-PLSVVNFSSLLFLDLSSNDFNSSIP 259
           +DLS+A + W+Q  N LPSL ELH+P C L  F   L  +NF+SL  LDLS+N+F+S+IP
Sbjct: 200 IDLSEAAAYWLQTINTLPSLLELHMPNCQLSNFSLSLPFLNFTSLSILDLSNNEFDSTIP 259

Query: 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWD 319
            WL N+S L +LDL++NNLQG +PDAF N TSL+ LDLS+NS I G+ P+ LG+LC L  
Sbjct: 260 HWLFNLSSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSQNSNIEGEFPRTLGNLCCLRT 319

Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
           L LS N L GEI EF+D LS C+ S+LE+LDLG N L G LP+SLG L+NL+ LQL  N 
Sbjct: 320 LILSVNKLSGEITEFLDGLSACSYSTLENLDLGFNELTGNLPDSLGHLKNLRYLQLRSNS 379

Query: 380 FRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSK 439
           F GSIPESIG LSSL+ELYL  N M G IP SLG+LS LVVL+++GN W G++TE HF+ 
Sbjct: 380 FSGSIPESIGRLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNGNSWEGVITEAHFAN 439

Query: 440 LKNLKELHIAKYSLAPRLTLVFNVSPEW 467
           L +LK+L I + S  P ++LVFNVS +W
Sbjct: 440 LSSLKQLSITRSS--PNVSLVFNVSSDW 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/472 (56%), Positives = 337/472 (71%), Gaps = 31/472 (6%)

Query: 3   NNQYIQPVFLVLLS-GFLFFNSVRLSTCQSIAR--CVQNEKEALLKIKASVTDPSGRLSS 59
           NN +IQ +FL++ S GFLF   +++ +CQ   +  C+  EK ALLK K  +TDPSGRLSS
Sbjct: 4   NNVFIQLLFLIITSSGFLFHEIIKVGSCQGDHQRGCIDTEKVALLKFKQGLTDPSGRLSS 63

Query: 60  WTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNY 119
           W GEDCCKW GV+C+N +G V++L LR          +GT  +L G+ISP++LDLK+LNY
Sbjct: 64  WVGEDCCKWRGVVCNNRSGHVIKLTLRY------LDSDGTEGELGGKISPALLDLKYLNY 117

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179
           LDLS+NNF G  IP F+GSLEKLRYLNLSGASF G IPP  GNLSSL  LDL  ++  S 
Sbjct: 118 LDLSMNNFGGIPIPEFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDLKEYFDES- 176

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
             DD+ W+S L+SL++LNL GVDLS+A + W+QA + + SL ELHLPAC L + PP   +
Sbjct: 177 SQDDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKISSLLELHLPACALADLPP--SL 234

Query: 240 NFSSLL----FLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLREL 295
            FSSL+     +DLSSN FNS+IP WL  +  L +LDLS+NNL+G+I D+FAN TS+  L
Sbjct: 235 PFSSLITSLSVIDLSSNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDSFANRTSIERL 294

Query: 296 DLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNN 355
                        +++GSLCNL  L LS NDL+GEI E +D LS C +S LE+LDLG N+
Sbjct: 295 -------------RNMGSLCNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGFND 341

Query: 356 LGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKL 415
           LGGFLPNSLG+L NLK L LW N F GSIP SIGNLS L ELYL +N M+GTIP++LG L
Sbjct: 342 LGGFLPNSLGKLHNLKSLWLWDNSFVGSIPSSIGNLSHLEELYLSDNSMNGTIPETLGGL 401

Query: 416 SHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW 467
           S LV +++S NP +G+VTE HFS L +LKE   + Y + PR++LVFN+SPEW
Sbjct: 402 SKLVAIELSENPLMGVVTEAHFSNLTSLKEF--SNYRVTPRVSLVFNISPEW 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/434 (60%), Positives = 323/434 (74%), Gaps = 5/434 (1%)

Query: 35  CVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSF 94
           C++ EKE LLK K  +TDPSGRLSSW GEDCCKW GV C N TG+V++LKL +P  P+S 
Sbjct: 3   CLEVEKEGLLKFKQGLTDPSGRLSSWVGEDCCKWRGVSCYNRTGRVIKLKLGNP-FPNSL 61

Query: 95  TDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG 154
             + T  +L GEI+PS+L LK+LNYLDLS NNF G  IP F+GSL KLRYLNLSGASF G
Sbjct: 62  EGDRTASELGGEINPSLLSLKYLNYLDLSKNNFEGMEIPKFIGSLRKLRYLNLSGASFGG 121

Query: 155 NIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQAT 214
            IPP+  NLS+L+ LDLNT Y      + +EWLS LSSL+YLNL G+DLSKA + W+Q  
Sbjct: 122 IIPPNIANLSNLRYLDLNT-YSIEPNKNGLEWLSGLSSLKYLNLGGIDLSKAAAYWLQTV 180

Query: 215 NMLPSLSELHLPACGLFEFP-PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
           N LPSL ELH+P C L      L  +NF+SL  LDLS+N F+S+IP WL N+S L +LDL
Sbjct: 181 NTLPSLLELHMPNCQLSNLSLSLPFLNFTSLSILDLSNNGFDSTIPHWLFNLSSLVYLDL 240

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
           ++NNLQG +PDAF N TSL+ LDLS+NS I G++P+ LG+LC L  L LS N L GEI E
Sbjct: 241 NSNNLQGGLPDAFQNFTSLQLLDLSKNSNIEGELPRTLGNLCYLRTLILSVNKLSGEIAE 300

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
           F+D LS C+ S+LE+LDLG N L G LP+SLG L+NL+ LQLW N FRGSIPESIG+LSS
Sbjct: 301 FLDGLSACSYSTLENLDLGFNKLTGNLPDSLGHLKNLRYLQLWSNSFRGSIPESIGSLSS 360

Query: 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
           L+ELYL  N M G IP SLG+LS LVVL+++ N W G++TE HF+ L +LK+L I K S 
Sbjct: 361 LQELYLSQNQMGGIIPDSLGQLSSLVVLELNENSWEGVITEAHFANLSSLKQLSITKSS- 419

Query: 454 APRLTLVFNVSPEW 467
            P ++LVFN+S +W
Sbjct: 420 -PNVSLVFNISSDW 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/485 (56%), Positives = 338/485 (69%), Gaps = 21/485 (4%)

Query: 1   MAN-NQYIQPVFLVLLSG-FLFFNSVRLSTCQSI--ARCVQNEKEALLKIKASVTDPSGR 56
           MAN N  I  + L+ LS  FL+  +V+L +C  +    C + E++AL+  K  +TDPSGR
Sbjct: 1   MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGR 60

Query: 57  LSSWTGEDCCKWEGVICDNSTGKVVQLKLR-----SPEIPDSFT-----DNGTTYQLEGE 106
           LSSW G DCC+W GV+C     +V++LKLR     +P+  D  T     D G  +   GE
Sbjct: 61  LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARTPDANDEDTGAFEDDYGAAHAFGGE 120

Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
           IS S+LDLK L YLDLS+NNF G +IP F+GS ++LRYLNLSGASF G IPP  GNLSSL
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 180

Query: 167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226
             LDLN++   S+E DD+ WLS LSSL++LNL  +DLSKA + W +A N L SL EL LP
Sbjct: 181 LYLDLNSYSLESVE-DDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLP 239

Query: 227 ACGLFEFP--PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD 284
            CGL   P  PL   N +SLL LDLS+NDFNSSIP WL N S LA+LDL++NNLQG++P+
Sbjct: 240 RCGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPE 299

Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN- 343
            F  + SL+ +D S N  IGG +P+DLG LCNL  L LS N + GEI EF+D LS+C N 
Sbjct: 300 GFGYLISLKYIDFSSNLFIGGHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNS 359

Query: 344 SSLESLDLGQN-NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
           SSLESLDLG N  LGGFLPNSLG L+NLK L LW N F GSIP SIGNLSSL+  Y+  N
Sbjct: 360 SSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISEN 419

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFN 462
            M+G IP+S+G+LS LV LD+S NPW+G+VTE HFS L +L EL I K S  P +TLVFN
Sbjct: 420 QMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSS--PNITLVFN 477

Query: 463 VSPEW 467
           V+ +W
Sbjct: 478 VNSKW 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488633|ref|XP_002264905.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/473 (56%), Positives = 339/473 (71%), Gaps = 28/473 (5%)

Query: 1   MANNQ-YIQPVFLVLLS-GFLFFNSVRLSTCQSIAR--CVQNEKEALLKIKASVTDPSGR 56
           MANN  +IQ +FL++ S GFLF +++++ +CQ   +  CV  EK ALLK K  +TD S R
Sbjct: 1   MANNNVFIQLLFLIITSSGFLFHDTIKVGSCQGDHQRGCVDTEKVALLKFKQGLTDTSDR 60

Query: 57  LSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKH 116
           LSSW GEDCCKW GV+C+N +  V++L LR          +GT  +L G+ISP++L+LK+
Sbjct: 61  LSSWVGEDCCKWRGVVCNNRSRHVIKLTLRY------LDADGTEGELGGKISPALLELKY 114

Query: 117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYY 176
           LNYLDLS+NNF G+ IP F+GSLEKLRYLNLSGASF G IPP  GNLSSL  LDL  ++ 
Sbjct: 115 LNYLDLSMNNFGGTPIPKFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDLKEYFD 174

Query: 177 SSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP- 235
            S   +D+ W+S L+SL++LNL GVDLS+A + W+QA + LPSLSELHLPAC L + PP 
Sbjct: 175 ES-NQNDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPPS 233

Query: 236 LSVVNF-SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
           L   N  +SL  +DLS+N FNS+IP WL  +  L +LDLS+NNL+G+I DAFAN TS+  
Sbjct: 234 LPFSNLITSLSIIDLSNNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDAFANGTSIER 293

Query: 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354
           L             +++GSLCNL  L LS NDL+GEI E +D LS C +S LE+LDLG N
Sbjct: 294 L-------------RNMGSLCNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGFN 340

Query: 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK 414
           +LGGFLPNSLG+L NLK L LW N F GSIP SIGNLS L ELYL +N M+GTIP++LG+
Sbjct: 341 DLGGFLPNSLGKLHNLKSLWLWDNSFVGSIPSSIGNLSYLEELYLSDNSMNGTIPETLGR 400

Query: 415 LSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW 467
           LS LV +++S NP  G+VTE HFS L +LKE   + Y   PR++LVFN++PEW
Sbjct: 401 LSKLVAIELSENPLTGVVTEAHFSNLTSLKEF--SNYRGTPRVSLVFNINPEW 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 271/485 (55%), Positives = 335/485 (69%), Gaps = 22/485 (4%)

Query: 1   MAN-NQYIQPVFLVLLSG-FLFFNSVRLSTCQSI--ARCVQNEKEALLKIKASVTDPSGR 56
           MAN N  I  + L+ LS  FL+  +V+L +C  +    C + E++AL+  K  +TDPSGR
Sbjct: 1   MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVTCTEIERKALVDFKQGLTDPSGR 60

Query: 57  LSSWTGEDCCKWEGVICDNSTGKVVQLKLR-----SPEIPDSFT-----DNGTTYQLEGE 106
           LSSW G DCC+W GV+C     +V++LKLR     SP+  D  T     D G  +   GE
Sbjct: 61  LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARSPDANDEDTGAFEDDYGAAHAFGGE 120

Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
           IS S+LDLK L YLDLS+NN  G +IP F+GS ++LRYLNLSGASF G IPP  GNLSSL
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNLEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 180

Query: 167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226
             LDLN++   S+E DD+ WLS LSSL++LNL  +DLSKA + W +A N L SL EL LP
Sbjct: 181 LYLDLNSYSLESVE-DDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLP 239

Query: 227 ACGLFEFP--PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD 284
            CGL   P  PL   N +SLL LDLS+NDFNSSIP WL N S LA+LDL++NNLQG++P+
Sbjct: 240 RCGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPE 299

Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344
            F  + SL+ +D S N  IG  +P+DLG LCNL  L LS N + GEI EF+D LS+C NS
Sbjct: 300 GFGYLISLKYIDFSSNLFIG-HLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNS 358

Query: 345 S-LESLDLGQN-NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
           S LESLDLG N  LGGFLPNSLG L+NLK L LW N F GSIP SIGNLSSL+  Y+  N
Sbjct: 359 SSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISEN 418

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFN 462
            M+G IP+S+G+LS LV LD+S NPW+G+VTE HFS L +L EL I K  L   +TLVFN
Sbjct: 419 QMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSFL--NITLVFN 476

Query: 463 VSPEW 467
           V+ +W
Sbjct: 477 VNSKW 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488635|ref|XP_003633793.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/476 (55%), Positives = 326/476 (68%), Gaps = 30/476 (6%)

Query: 2   ANNQYIQPVFLVLLS-GFLFFNSVRLSTCQS---IARCVQNEKEALLKIKASVTDPSGRL 57
             N  +Q +FLV++S GFLF   ++   C      A   + E+ ALLK K  +TDPS RL
Sbjct: 3   TTNASLQLLFLVIMSSGFLFPEILKPGCCHGDHHRAASFETERVALLKFKQGLTDPSHRL 62

Query: 58  SSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHL 117
           SSW GEDCCKW GV+C+N +G V +L LRS        D+GT  +L GEIS S+LDLK+L
Sbjct: 63  SSWVGEDCCKWRGVVCNNRSGHVNKLNLRS------LDDDGTHGKLGGEISHSLLDLKYL 116

Query: 118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF--- 174
           N+LDLS+NNF G+RIP F+GSLEKLRYLNLSGASF+G IPP  GNLS L  LDL  +   
Sbjct: 117 NHLDLSMNNFEGTRIPKFIGSLEKLRYLNLSGASFSGPIPPQLGNLSRLIYLDLKEYFDF 176

Query: 175 --YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
             Y      +D++W+S LSSL++LNLEGV+LS+  + W+ A + LP LSELHLP+CGL  
Sbjct: 177 NTYPDESSQNDLQWISGLSSLRHLNLEGVNLSRTSAYWLHAVSKLP-LSELHLPSCGLSV 235

Query: 233 FP-PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
            P  L   N +SL  L LS+N FN++IP W+  +  L +LDLS NNL+G+I DAFAN TS
Sbjct: 236 LPRSLPSSNLTSLSMLVLSNNGFNTTIPHWIFQLRNLVYLDLSFNNLRGSILDAFANRTS 295

Query: 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351
           L  L             + +GSLCNL  L LS NDL+GEI E +D LS C N SLE+L+L
Sbjct: 296 LESL-------------RKMGSLCNLKTLILSENDLNGEITEMIDVLSGCNNCSLENLNL 342

Query: 352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS 411
           G N LGGFLP SLG L NL+ + LW N F GSIP SIGNLS+L ELYL NN M GTIP++
Sbjct: 343 GLNELGGFLPYSLGNLSNLQSVLLWDNSFVGSIPNSIGNLSNLEELYLSNNQMSGTIPET 402

Query: 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW 467
           LG+L+ LV LDIS NPW G++TE H S L NLKEL IAK+SL P LTLV N+S EW
Sbjct: 403 LGQLNKLVALDISENPWEGVLTEAHLSNLTNLKELSIAKFSLLPDLTLVINISSEW 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090228|emb|CBI40047.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/451 (56%), Positives = 321/451 (71%), Gaps = 29/451 (6%)

Query: 3   NNQYIQPVFLVLLS-GFLFFNSVRLSTCQSIAR--CVQNEKEALLKIKASVTDPSGRLSS 59
           NN +IQ +FL++ S GFLF   +++ +CQ   +  C+  EK ALLK K  +TDPSGRLSS
Sbjct: 47  NNVFIQLLFLIITSSGFLFHEIIKVGSCQGDHQRGCIDTEKVALLKFKQGLTDPSGRLSS 106

Query: 60  WTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNY 119
           W GEDCCKW GV+C+N +G V++L LR          +GT  +L G+ISP++LDLK+LNY
Sbjct: 107 WVGEDCCKWRGVVCNNRSGHVIKLTLRY------LDSDGTEGELGGKISPALLDLKYLNY 160

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179
           LDLS+NNF G  IP F+GSLEKLRYLNLSGASF G IPP  GNLSSL  LDL   Y+   
Sbjct: 161 LDLSMNNFGGIPIPEFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDLKE-YFDES 219

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
             DD+ W+S L+SL++LNL GVDLS+A + W+QA + + SL ELHLPAC L + PP   +
Sbjct: 220 SQDDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKISSLLELHLPACALADLPP--SL 277

Query: 240 NFSSLL----FLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLREL 295
            FSSL+     +DLSSN FNS+IP WL  +  L +LDLS+NNL+G+I D+FAN TS+  L
Sbjct: 278 PFSSLITSLSVIDLSSNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDSFANRTSIERL 337

Query: 296 DLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNN 355
                        +++GSLCNL  L LS NDL+GEI E +D LS C +S LE+LDLG N+
Sbjct: 338 -------------RNMGSLCNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGFND 384

Query: 356 LGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKL 415
           LGGFLPNSLG+L NLK L LW N F GSIP SIGNLS L ELYL +N M+GTIP++LG L
Sbjct: 385 LGGFLPNSLGKLHNLKSLWLWDNSFVGSIPSSIGNLSHLEELYLSDNSMNGTIPETLGGL 444

Query: 416 SHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
           S LV +++S NP +G+VTE HFS L +LKEL
Sbjct: 445 SKLVAIELSENPLMGVVTEAHFSNLTSLKEL 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488637|ref|XP_003633794.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/477 (54%), Positives = 335/477 (70%), Gaps = 29/477 (6%)

Query: 1   MANNQY-IQPVFLVLLS-GFLFFNSVRLSTCQSIAR--CVQNEKEALLKIKASVTDPSGR 56
           MAN    +Q +FLV+LS GF+F  +++  +CQ      C++ EK ALLK K  +TDPS R
Sbjct: 1   MANTSASVQLLFLVILSSGFVFHVTLQPGSCQGDHHGGCIETEKVALLKFKQGLTDPSHR 60

Query: 57  LSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKH 116
           LSSW GEDCCKW GV+C+N +G V++L LRS        D+GT+ +L GEIS S+LDLK+
Sbjct: 61  LSSWVGEDCCKWRGVVCNNRSGHVIKLNLRS------LDDDGTSGKLGGEISLSLLDLKY 114

Query: 117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF-- 174
           LN+LDLS+NNF G+RIP F+GSLE+LRYLNLSGASF+G IPP  GNLS L  LDL  +  
Sbjct: 115 LNHLDLSMNNFEGTRIPKFIGSLERLRYLNLSGASFSGPIPPQLGNLSRLIYLDLREYFD 174

Query: 175 ---YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
              Y      +D++W+S LSSL++LNLEG++LS+A + W+QA + LPSLSELHL +CGL 
Sbjct: 175 FNTYPDESSQNDLQWISGLSSLRHLNLEGINLSRASAYWLQAVSKLPSLSELHLSSCGLS 234

Query: 232 EFPPLSVVNFSSLLFLDLSSND-FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
             P     +  S L + + SN+ FNS+IP WL  +  L +LDLS+NNL+G+I +AFAN T
Sbjct: 235 VLPRSLPSSNLSSLSILVLSNNGFNSTIPHWLFRMRNLVYLDLSSNNLRGSILEAFANRT 294

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
           SL  +             + +GSLCNL  L LS N+ +GEI E  D  S C NSSLE LD
Sbjct: 295 SLERI-------------RQMGSLCNLKTLILSENNFNGEITELSDVFSGCNNSSLEKLD 341

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           LG N+LGGFLPNSLG + NL+ L L  NLF GSIP+SIGNLS+L+ELYL NN M+GTIP+
Sbjct: 342 LGFNDLGGFLPNSLGNMYNLRSLLLRENLFLGSIPDSIGNLSNLKELYLSNNQMNGTIPE 401

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPEW 467
           +LG+L+ LV +D+S N W G++TE H S L NLK+L I KYSL+P L LV N+S +W
Sbjct: 402 TLGQLTELVAIDVSENSWEGVLTEAHLSNLTNLKDLSITKYSLSPDLKLVINISSDW 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770493|emb|CAN78141.1| hypothetical protein VITISV_019847 [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 272/485 (56%), Positives = 337/485 (69%), Gaps = 21/485 (4%)

Query: 1   MAN-NQYIQPVFLVLLSG-FLFFNSVRLSTCQSI--ARCVQNEKEALLKIKASVTDPSGR 56
           MAN N  I  + L+ LS  FL+  +V+L +C  +    C + E++AL+  K  +TDPSGR
Sbjct: 1   MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGR 60

Query: 57  LSSWTGEDCCKWEGVICDNSTGKVVQLKLRS-----PEIPDSFT-----DNGTTYQLEGE 106
           LSSW G DCC+W GV+C     +V++LKLR+     P+  D  T     D G  +   GE
Sbjct: 61  LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARXPDANDEDTGAFEDDYGAAHAFGGE 120

Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
           IS S+LDLK L YLDLS+NNF G +IP F+GS ++LRYLNLSGASF G IPP  GNLSSL
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 180

Query: 167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226
             LDL ++   S+E DD+ WLS LSSL++LNL  +DLSKA + W +A N L SL EL LP
Sbjct: 181 LYLDLXSYSLESVE-DDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLP 239

Query: 227 ACGLFEFP--PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD 284
            CGL   P  PL   N +SLL LDLS+NDFNSSIP WL N S LA+LDL++NNLQG++P+
Sbjct: 240 RCGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPE 299

Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN- 343
            F  + SL+ +D S N  IGG +P+DLG LCNL  L LS N + GEI EF+D LS+C N 
Sbjct: 300 GFGYLISLKYIDFSSNLFIGGHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNS 359

Query: 344 SSLESLDLGQN-NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
           SSLESLDLG N  LGGFLPNSLG L+NLK L LW N F GSIP SIGNLSSL+  Y+  N
Sbjct: 360 SSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISEN 419

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFN 462
            M+G IP+S+G+LS LV LD+S NPW+G+VTE HFS L +L EL I K S  P +TLVFN
Sbjct: 420 QMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSS--PNITLVFN 477

Query: 463 VSPEW 467
           V+ +W
Sbjct: 478 VNSKW 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.920	0.475	0.438	3.7e-87
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.843	0.351	0.333	7.3e-40
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.841	0.387	0.325	8.2e-38
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.792	0.372	0.325	7.3e-37
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.867	0.397	0.310	7.7e-37
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.826	0.492	0.307	2.2e-36
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.691	0.334	0.322	6.9e-25
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.800	0.380	0.322	1.1e-35
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.847	0.317	0.315	2.8e-35
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.875	0.417	0.317	3.7e-35

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 194/442 (43%), Positives = 263/442 (59%)

Query:    34 RCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDS 93
             +C+  E++ALL  +A++TD S RL SW+G DCC W GV+CD  T  VV++ LR+P   D 
Sbjct:    32 KCISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNPS-QDV 90

Query:    94 FTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFA 153
              +D      L G+I PS+  LK L+YLDLS N+F    IP F+G +  LRYLNLS +SF+
Sbjct:    91 RSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSSSFS 150

Query:   154 GNIPPSFGNLSSLQILDL--NTFYYS---SLESDDVEWLSRLSS-LQYLNLEGVDLSKAG 207
             G IP S GNLS L+ LDL   +F  S   SL + ++ WLS LSS L+YLN+  V+LS AG
Sbjct:   151 GEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNLSGAG 210

Query:   208 SSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXX--IPQWLLNI 265
              +W+Q  + + +L ELHL    L   PP                        IP WL  +
Sbjct:   211 ETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSLNSPIPNWLFGL 270

Query:   266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
             + L  L L  + LQG+IP  F N+  L  LDLS N  + G+IP  LG L  L  LDLS N
Sbjct:   271 TNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLDLSAN 330

Query:   326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP 385
             +L+G+I  F+D  S+   +SL  LDL  N L G LP SLG L NL+ L L  N F GS+P
Sbjct:   331 ELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGSVP 390

Query:   386 ESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKE 445
              SIGN++SL++L L NN M+GTI +SLG+L+ LV L++  N W G++ + HF  L++LK 
Sbjct:   391 SSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKS 450

Query:   446 LHIAKYSLAPRLTLVFNVSPEW 467
             + +   +  P  +LVF +   W
Sbjct:   451 IRL---TTEPYRSLVFKLPSTW 469

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 7.3e-40, P = 7.3e-40
 Identities = 148/444 (33%), Positives = 214/444 (48%)

Query:    28 TCQSIARCVQNEKEALLKIKASVTDPSGRLSSW-------TGEDCCKWEGVICDNSTGKV 80
             +C   A     E  ALLK K++ T+ S +LSSW       T   C  W GV C NS G +
Sbjct:    22 SCSISASATIAEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSI 79

Query:    81 VQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLE 140
              +L L +  I  +F D            P +  L +L Y+DLS+N   G+  P F G+L 
Sbjct:    80 EELNLTNTGIEGTFQD-----------FPFI-SLSNLAYVDLSMNLLSGTIPPQF-GNLS 126

Query:   141 KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL---ESDDVEWLSRLSSLQYLN 197
             KL Y +LS     G I PS GNL +L +L L+  Y +S+   E  ++E ++ L+ L    
Sbjct:   127 KLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLA-LSQNK 185

Query:   198 LEGVDLSKAGSS---WV------QATNMLP-------SLSELHLPACGLFEFPPXXXXXX 241
             L G   S  G+     V        T ++P       S+++L L    L    P      
Sbjct:   186 LTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNL 245

Query:   242 XXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS 301
                             IP  + N+  + +L LS N L G+IP +  N+ +L  L L +N 
Sbjct:   246 KNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNY 305

Query:   302 LIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP 361
             L GG IP  LG++ ++ DL+LS N L G I   +  L      +L  L L +N L G +P
Sbjct:   306 LTGG-IPPKLGNIESMIDLELSNNKLTGSIPSSLGNLK-----NLTILYLYENYLTGVIP 359

Query:   362 NSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVL 421
               LG +E++  LQL  N   GSIP S GNL +L  LYL+ N + G IP+ LG +  ++ L
Sbjct:   360 PELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINL 419

Query:   422 DISGNPWIGLVTEV--HFSKLKNL 443
             D+S N   G V +   +F+KL++L
Sbjct:   420 DLSQNKLTGSVPDSFGNFTKLESL 443

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 8.2e-38, P = 8.2e-38
 Identities = 139/427 (32%), Positives = 201/427 (47%)

Query:    38 NEKEALLKIKASVTDPSGRLSSWTGEDC---CKWEGVICDNSTGKVVQLKLR----SPEI 90
             NE   LL +K+++ DP   L  W   D    C W GV C NS G V +L L     + +I
Sbjct:    29 NELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRC-NSNGNVEKLDLAGMNLTGKI 87

Query:    91 PDSFTDNGT--TYQLEGEISPSVL--DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLR--Y 144
              DS +   +  ++ +      S+L   +  L  +D+S N+F GS    FL S E L   +
Sbjct:    88 SDSISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSL---FLFSNESLGLVH 144

Query:   145 LNLSGASFAGNIPPSFGNLSSLQILDLN-TFYYSSLESDDVEWLSRLSSLQYLNLEGVDL 203
             LN SG + +GN+    GNL SL++LDL   F+  SL S        L  L++L L G +L
Sbjct:   145 LNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSS----FKNLQKLRFLGLSGNNL 200

Query:   204 SKAGSSWVQATNMLPSLSELHLPACGLFEFP-PXXXXXXXXXXXXXXXXXXXXXXIPQWL 262
             +    S       LPSL E  +     F+ P P                      IP  L
Sbjct:   201 TGELPS---VLGQLPSL-ETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSEL 256

Query:   263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322
               +  L  L L  NN  G IP    ++T+L+ LD S+N+L G +IP ++  L NL  L+L
Sbjct:   257 GKLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTG-EIPMEITKLKNLQLLNL 315

Query:   323 SGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG 382
               N L G I   +  L++     L+ L+L  N L G LP+ LG+   L+ L +  N F G
Sbjct:   316 MRNKLSGSIPPAISSLAQ-----LQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSG 370

Query:   383 SIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKN 442
              IP ++ N  +L +L L NN   G IP +L     LV + +  N   G +  + F KL+ 
Sbjct:   371 EIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIP-IGFGKLEK 429

Query:   443 LKELHIA 449
             L+ L +A
Sbjct:   430 LQRLELA 436

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 7.3e-37, P = 7.3e-37
 Identities = 130/400 (32%), Positives = 187/400 (46%)

Query:    56 RLSSWT-GEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISP--SVL 112
             +  SWT   DCC W+G+ CD  +GKV  L L             +   L G + P  S+ 
Sbjct:    74 KTKSWTKNSDCCYWDGITCDTKSGKVTGLDL-------------SCSCLHGRLEPNSSLF 120

Query:   113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
              L+HL  ++L+ NNF  S IP       +L  LNLS +SF+G+I      L++L  LDL+
Sbjct:   121 RLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSLDLS 180

Query:   173 T-FYYS--SLESDDVEWLSRLSSLQYLNLEGVDLSKAG-SSWVQAT-NMLPSLSELHLPA 227
             + F YS  SL  +   +L  L +L ++NL  +D+S    SS +    + + SL  L L  
Sbjct:   181 SSFPYSPSSLSIEKPLFL-HLLALNFMNLRELDMSSVDISSAIPIEFSYMWSLRSLTLKG 239

Query:   228 CGLF-EFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAF 286
             C L   FP                       +P +L N S L  L +   +  G IP++ 
Sbjct:   240 CNLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNNS-LLKLSIYNTSFSGTIPNSI 298

Query:   287 ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSL 346
             +N+  L  L L + S   G+IP  L SL +L +L LS N+  GEI   V  L +     L
Sbjct:   299 SNLKHLTSLKLQQ-SAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQ-----L 352

Query:   347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406
                D+  NNL G  P+SL  L  L+ + +  N F G +P +I  LS+L      +N   G
Sbjct:   353 TLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDNSFTG 412

Query:   407 TIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
             +IP SL  +S L  L +S N         + S L NL+ L
Sbjct:   413 SIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRL 452

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 7.7e-37, P = 7.7e-37
 Identities = 137/441 (31%), Positives = 203/441 (46%)

Query:    35 CVQNEKEALLKIKASVTDPSGRLSSWTGE-DCCKWEGVICDNSTGKVVQLKLRSPEIPDS 93
             C  ++K+ALL  K        +  SW  + DCC W+G+ CD  +G V+ L L S  +   
Sbjct:    74 CHSDQKDALLDFKNEFGMVDSK--SWVNKSDCCSWDGITCDAKSGNVIGLDLSSIFLYGQ 131

Query:    94 FTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFA 153
                N + ++L           +HL  L+L+ NNF  S IP     L  L  L+LS +S +
Sbjct:   132 LKSNSSLFKL-----------RHLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLS 180

Query:   154 GNIPPSFGNLSSLQILDLNT--------FYYSSLESDDVEWLSRLSSLQYLNLEGVDLS- 204
             G IP +   L+ L  LDL++        F+Y S++   +  L+R  +L+  NL  +D+S 
Sbjct:   181 GQIPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLAR--NLR--NLRELDMSY 236

Query:   205 -KAGSSWVQATNMLPSLSELHLPACGLF-EFPPXXXXXXXXXXXXXXXXXXXXXXIPQWL 262
              K  S   +  + + SL  L+L  C LF EFP                       +P + 
Sbjct:   237 VKISSEIPEEFSNIRSLRSLNLNGCNLFGEFPSSILLIPNLQSIDLGNNPNLRGNLPVFH 296

Query:   263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322
              N S L  L +   +  G IPD+ +++ +L  L LS  S   G+IP  LG+L +L  L L
Sbjct:   297 ENNS-LLKLTILYTSFSGAIPDSISSLKNLTSLTLSV-SYFSGKIPFSLGNLSHLSHLSL 354

Query:   323 SGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG 382
             S N+L GEI   +  L++  N       +G N L G LP +L  L  L  + L  N F G
Sbjct:   355 SSNNLIGEIPSSIGNLNQLTN-----FYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTG 409

Query:   383 SIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKN 442
             S+P SI  LS L+  +  +N   G I   L K+  L  + +S N    LV   +   L N
Sbjct:   410 SLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPN 469

Query:   443 LKELHIAKYSLAPRLTLVFNV 463
             L+  +I  Y+      L  NV
Sbjct:   470 LETFYIYHYNYTKVRPLDLNV 490

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 2.2e-36, P = 2.2e-36
 Identities = 129/420 (30%), Positives = 199/420 (47%)

Query:    35 CVQNEKEALLKIKASVTDPSGRLSS-WT-GEDCCKWEGVICDNSTGKVVQLKL-----RS 87
             C  ++++ALL+++     PS  L + W  G DCC W GV CD   G+V+ LKL      S
Sbjct:    38 CRHDQRDALLELQKEFPIPSVILQNPWNKGIDCCSWGGVTCDAILGEVISLKLYFLSTAS 97

Query:    88 PEIPDS---FTDNGTTY------QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGS 138
               +  S   F     T+       L+GEI  S+ +L HL +LDLS N+  G  +P  +G+
Sbjct:    98 TSLKSSSALFKLQHLTHLDLSNCNLQGEIPSSIENLSHLTHLDLSTNHLVGE-VPASIGN 156

Query:   139 LEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNL 198
             L +L Y++L G    GNIP SF NL+ L +LDL+    ++    D+  LS L+SL  L+L
Sbjct:   157 LNQLEYIDLRGNHLRGNIPTSFANLTKLSLLDLHE---NNFTGGDIV-LSNLTSLAILDL 212

Query:   199 EGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXI 258
                      S+ +   + L  +        GLF   P                      I
Sbjct:   213 SSNHFKSFFSADLSGLHNLEQIFGNENSFVGLF---PASLLKISSLDKIQLSQNQFEGPI 269

Query:   259 PQW-LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
                   + S+L  LD+S NN  G +P + + + +L  LDLS N+   G  P+ +  L NL
Sbjct:   270 DFGNTSSSSRLTMLDISHNNFIGRVPSSLSKLVNLELLDLSHNNF-RGLSPRSISKLVNL 328

Query:   318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI--LQL 375
               LD+S N L+G++  F+ +      S+L+S+DL  N+    L  S+  +   K+  L L
Sbjct:   329 TSLDISYNKLEGQVPYFIWK-----PSNLQSVDLSHNSFFD-LGKSVEVVNGAKLVGLNL 382

Query:   376 WGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV 435
               N  +G IP+ I N   +  L L +N   G+IP+ L   +    L++  N   G + E+
Sbjct:   383 GSNSLQGPIPQWICNFRFVFFLDLSDNRFTGSIPQCLKNSTDFNTLNLRNNSLSGFLPEL 442

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 6.9e-25, P = 6.9e-25
 Identities = 109/338 (32%), Positives = 156/338 (46%)

Query:   103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGN 162
             L G I  S+ +      LD+S N   G  IP  +G L+ +  L+L G    G IP   G 
Sbjct:   227 LTGTIPESIGNCTSFQILDISYNQITGE-IPYNIGFLQ-VATLSLQGNRLTGRIPEVIGL 284

Query:   163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222
             + +L +LDL+    + L       L  LS    L L G  L+  G    +  NM   LS 
Sbjct:   285 MQALAVLDLSD---NELVGPIPPILGNLSFTGKLYLHGNMLT--GPIPSELGNM-SRLSY 338

Query:   223 LHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNI 282
             L L    L    P                      IP  + + + L   ++  N L G+I
Sbjct:   339 LQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSI 398

Query:   283 PDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342
             P AF N+ SL  L+LS N+   G+IP +LG + NL  LDLSGN+  G I   +  L    
Sbjct:   399 PLAFRNLGSLTYLNLSSNNF-KGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEH-- 455

Query:   343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
                L  L+L +N+L G LP   G L +++++ +  NL  G IP  +G L +L  L L+NN
Sbjct:   456 ---LLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNN 512

Query:   403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV-HFSK 439
              + G IP  L     LV L++S N   G+V  + +FS+
Sbjct:   513 KLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSR 550

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 135/419 (32%), Positives = 196/419 (46%)

Query:    56 RLSSWTGE-DCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDL 114
             +  SWT   DCC W+G+ CD   G V++L L    +      N + ++L     P    L
Sbjct:    60 KTESWTNNSDCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLFRL-----PQ---L 111

Query:   115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF 174
             + L  LDLS N+F G +IP+ L +L  L  L+LS   F+G IP S GNLS L  +D +  
Sbjct:   112 RFLTTLDLSNNDFIG-QIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHN 170

Query:   175 YYSSLESDDVEWLSRLSS--LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
              +S      + +LS L+S  L Y N  G   S  G+        L  L+ L L     F 
Sbjct:   171 NFSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGN--------LSYLTTLRLSRNSFFG 222

Query:   233 FPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
               P                      IP  L N+S L  +DL  NN  G IP +  N++ L
Sbjct:   223 ELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLSCL 282

Query:   293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE----IIE---------FVDRLS 339
                 LS+N+++G +IP   G+L  L  L++  N L G     ++          F +RL+
Sbjct:   283 TSFILSDNNIVG-EIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLT 341

Query:   340 KCANSSLESL------DLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
                 S++ SL      D  +N+  G LP+SL  + +LK + L  N   GS+    GN+SS
Sbjct:   342 GTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGSL--GFGNISS 399

Query:   394 ---LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
                L  L L NN   G I +S+ KL +L  LD+S     GLV    FS LK+++ L+++
Sbjct:   400 YSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLS 458

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.8e-35, P = 2.8e-35
 Identities = 137/434 (31%), Positives = 211/434 (48%)

Query:    36 VQNEKEALLKIKAS-VTDPS--GRLSSWTGEDC--CKWEGVICDNSTG--KVVQLKLRSP 88
             + N+ + LL++K S VT+P     L  W  ++   C W GV CDN TG  +V+ L L   
Sbjct:    23 INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDN-TGLFRVIALNLTGL 81

Query:    89 EIPDSFT------DNG-----TTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLG 137
              +  S +      DN      ++  L G I  ++ +L  L  L L  N   G  IP+ LG
Sbjct:    82 GLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGE-IPSQLG 140

Query:   138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL--QY 195
             SL  +R L +      G+IP + GNL +LQ+L L +   +      +  L R+ SL  Q 
Sbjct:   141 SLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQD 200

Query:   196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXX 255
               LEG   ++ G+     T    + + L+    G     P                    
Sbjct:   201 NYLEGPIPAELGNC-SDLTVFTAAENMLN----GTI---PAELGRLENLEILNLANNSLT 252

Query:   256 XXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC 315
               IP  L  +S+L +L L AN LQG IP + A++ +L+ LDLS N+L G +IP++  ++ 
Sbjct:   253 GEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTG-EIPEEFWNMS 311

Query:   316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSS-LESLDLGQNNLGGFLPNSLGQLENLKILQ 374
              L DL L+ N L G + + +     C+N++ LE L L    L G +P  L + ++LK L 
Sbjct:   312 QLLDLVLANNHLSGSLPKSI-----CSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query:   375 LWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE 434
             L  N   GSIPE++  L  L +LYLHNN ++GT+  S+  L++L  L +  N   G + +
Sbjct:   367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPK 426

Query:   435 VHFSKLKNLKELHI 448
                S L+ L+ L +
Sbjct:   427 -EISALRKLEVLFL 439

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 3.7e-35, P = 3.7e-35
 Identities = 141/444 (31%), Positives = 211/444 (47%)

Query:    26 LSTCQSIARCVQNEKEALLKIKASVTD--PSGRLSSWTGEDCCKWEGVICDNSTGKVVQL 83
             L T  ++    +N+ E +   + S++    S   SS    D C W GV C+  + +V++L
Sbjct:    12 LITVMTVLASKENDHELIKNPQNSLSSWISSSSSSSSMLVDVCNWSGVKCNKESTQVIEL 71

Query:    84 KLRSP----EIPDSFTD-NG-TTYQLE-----GEISPSVLDLKH-LNYLDLSLNNFRGSR 131
              +       EI  S  +  G T   L      G+I P +  L   L  L LS N   G+ 
Sbjct:    72 DISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGN- 130

Query:   132 IPNFLGSLEKLRYLNLSGASFAGNIPPSF---GNLSSLQILDLNTFYYSSLESD-DVEWL 187
             IP  LG L +L YL+L      G+IP      G+ SSLQ +DL+    +SL  +  + + 
Sbjct:   131 IPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSN---NSLTGEIPLNYH 187

Query:   188 SRLSSLQYLNLEGVDLS-KAGSSWVQATNM----LPS-LSELHLPACGLFEFPPXXXXXX 241
               L  L++L L    L+    SS   +TN+    L S +    LP+  + + P       
Sbjct:   188 CHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYL 247

Query:   242 XXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT-SLRELDLSEN 300
                                 L N S L  L+L+ N+L G I  +  +++ +L ++ L +N
Sbjct:   248 SYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQN 307

Query:   301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360
               I G IP ++ +L NL  L+LS N L G I   + +LSK     LE + L  N+L G +
Sbjct:   308 R-IHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSK-----LERVYLSNNHLTGEI 361

Query:   361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV 420
             P  LG +  L +L +  N   GSIP+S GNLS LR L L+ N + GT+P+SLGK  +L +
Sbjct:   362 PMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEI 421

Query:   421 LDISGNPWIGLVTEVHFSKLKNLK 444
             LD+S N   G +     S L+NLK
Sbjct:   422 LDLSHNNLTGTIPVEVVSNLRNLK 445

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	467
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  187 bits (477), Expect = 9e-52
 Identities = 150/435 (34%), Positives = 211/435 (48%), Gaps = 62/435 (14%)

Query: 1   MANNQYIQPVFLVLLSGFLFFNSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSW 60
           MA        +L+ +  FLF N   L            E E LL  K+S+ DP   LS+W
Sbjct: 1   MAKKGPQHCPYLIFMLFFLFLNFSMLHA---------EELELLLSFKSSINDPLKYLSNW 51

Query: 61  -TGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNY 119
            +  D C W+G+ C+NS+ +VV + L    I              G+IS ++  L ++  
Sbjct: 52  NSSADVCLWQGITCNNSS-RVVSIDLSGKNI-------------SGKISSAIFRLPYIQT 97

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179
           ++LS N   G    +   +   LRYLNLS  +F G+IP   G++ +L+ LDL+    S  
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
             +D+      SSL+ L+L G              N+L       +P          S+ 
Sbjct: 156 IPNDI---GSFSSLKVLDLGG--------------NVLVG----KIPN---------SLT 185

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
           N +SL FL L+SN     IP+ L  +  L  + L  NNL G IP     +TSL  LDL  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF 359
           N+L G  IP  LG+L NL  L L  N L G I   +  L K     L SLDL  N+L G 
Sbjct: 246 NNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK-----LISLDLSDNSLSGE 299

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419
           +P  + QL+NL+IL L+ N F G IP ++ +L  L+ L L +N   G IPK+LGK ++L 
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 420 VLDISGNPWIGLVTE 434
           VLD+S N   G + E
Sbjct: 360 VLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (363), Expect = 9e-37
 Identities = 120/352 (34%), Positives = 180/352 (51%), Gaps = 15/352 (4%)

Query: 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGN 162
           L GEI   +  L  LN+LDL  NN  G  IP+ LG+L+ L+YL L     +G IPPS  +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222
           L  L  LDL+    +SL  +  E + +L +L+ L+L   + +        A   LP L  
Sbjct: 283 LQKLISLDLSD---NSLSGEIPELVIQLQNLEILHLFSNNFT---GKIPVALTSLPRLQV 336

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
           L L +       P ++   ++L  LDLS+N+    IP+ L +   L  L L +N+L+G I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 283 PDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342
           P +     SLR + L +NS   G++P +   L  ++ LD+S N+L G I        K  
Sbjct: 397 PKSLGACRSLRRVRLQDNSF-SGELPSEFTKLPLVYFLDISNNNLQGRI-----NSRKWD 450

Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
             SL+ L L +N   G LP+S G  + L+ L L  N F G++P  +G+LS L +L L  N
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454
            + G IP  L     LV LD+S N   G +    FS++  L +L +++  L+
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (344), Expect = 2e-34
 Identities = 111/337 (32%), Positives = 157/337 (46%), Gaps = 60/337 (17%)

Query: 94  FTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFA 153
            +DN     L GEI   V+ L++L  L L  NNF G +IP  L SL +L+ L L    F+
Sbjct: 291 LSDN----SLSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFS 345

Query: 154 GNIPPSFGNLSSLQILDLNT---------------------FYYSSLESDDVEWLSRLSS 192
           G IP + G  ++L +LDL+T                      + +SLE +  + L    S
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSN 252
           L+ + L+    S            LPS            EF  L +V F     LD+S+N
Sbjct: 406 LRRVRLQDNSFS----------GELPS------------EFTKLPLVYF-----LDISNN 438

Query: 253 DFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLG 312
           +    I     ++  L  L L+ N   G +PD+F +   L  LDLS N    G +P+ LG
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRN-QFSGAVPRKLG 496

Query: 313 SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372
           SL  L  L LS N L GEI    D LS C    L SLDL  N L G +P S  ++  L  
Sbjct: 497 SLSELMQLKLSENKLSGEI---PDELSSCKK--LVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIP 409
           L L  N   G IP+++GN+ SL ++ + +N + G++P
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  124 bits (312), Expect = 3e-30
 Identities = 98/262 (37%), Positives = 145/262 (55%), Gaps = 16/262 (6%)

Query: 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL-FEFPPLSVVNFSSLLF 246
           SR+ S+   +L G ++S   SS   A   LP +  ++L    L    P       SSL +
Sbjct: 69  SRVVSI---DLSGKNISGKISS---AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           L+LS+N+F  SIP+   +I  L  LDLS N L G IP+   + +SL+ LDL  N L+G +
Sbjct: 123 LNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-K 179

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ 366
           IP  L +L +L  L L+ N L G+I   + ++      SL+ + LG NNL G +P  +G 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-----SLKWIYLGYNNLSGEIPYEIGG 234

Query: 367 LENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
           L +L  L L  N   G IP S+GNL +L+ L+L+ N + G IP S+  L  L+ LD+S N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 427 PWIGLVTEVHFSKLKNLKELHI 448
              G + E+   +L+NL+ LH+
Sbjct: 295 SLSGEIPEL-VIQLQNLEILHL 315

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 40/252 (15%)

Query: 87  SPEIPDSFTDNGTTYQL-------EGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSL 139
           + EIP+    +G  ++L       EGEI  S+   + L  + L  N+F G  +P+    L
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-ELPSEFTKL 427

Query: 140 EKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLE 199
             + +L++S  +  G I     ++ SLQ+L L    +     D         S     LE
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---------SFGSKRLE 478

Query: 200 GVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP 259
            +DLS+   S                         P  + + S L+ L LS N  +  IP
Sbjct: 479 NLDLSRNQFS----------------------GAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWD 319
             L +  KL  LDLS N L G IP +F+ M  L +LDLS+N L  G+IPK+LG++ +L  
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL-SGEIPKNLGNVESLVQ 575

Query: 320 LDLSGNDLDGEI 331
           +++S N L G +
Sbjct: 576 VNISHNHLHGSL 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 36/87 (41%), Positives = 58/87 (66%)

Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
           ++ L L    L GF+PN + +L +L+ + L GN  RG+IP S+G+++SL  L L  N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLV 432
           G+IP+SLG+L+ L +L+++GN   G V
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 7e-13
 Identities = 55/173 (31%), Positives = 76/173 (43%), Gaps = 47/173 (27%)

Query: 38  NEKEALLKIKASVTDPSGRLSSWTGEDCCK----WEGVIC--DNSTGKVVQLKLRSPEIP 91
            E  AL  +K+S+  P  R   W G+ C      W G  C  D++ GK            
Sbjct: 372 EEVSALQTLKSSLGLPL-RFG-WNGDPCVPQQHPWSGADCQFDSTKGKWF---------- 419

Query: 92  DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS 151
                                    ++ L L     RG  IPN +  L  L+ +NLSG S
Sbjct: 420 -------------------------IDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNS 453

Query: 152 FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLS 204
             GNIPPS G+++SL++LDL+   Y+S      E L +L+SL+ LNL G  LS
Sbjct: 454 IRGNIPPSLGSITSLEVLDLS---YNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
           L L    L G I   + +L       L+S++L  N++ G +P SLG + +L++L L  N 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH-----LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 380 FRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG-KLSHLVVLDISGNP 427
           F GSIPES+G L+SLR L L+ N + G +P +LG +L H    + + N 
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 35/136 (25%)

Query: 254 FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGS 313
           F+S+  +W ++      L L    L+G IP+  + +  L+ ++LS NS I G IP  LGS
Sbjct: 411 FDSTKGKWFID-----GLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGS 464

Query: 314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL 373
           + +L  LDLS N  +G I                             P SLGQL +L+IL
Sbjct: 465 ITSLEVLDLSYNSFNGSI-----------------------------PESLGQLTSLRIL 495

Query: 374 QLWGNLFRGSIPESIG 389
            L GN   G +P ++G
Sbjct: 496 NLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 199 EGVD--LSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS 256
            G D         W         +  L L   GL  F P  +     L  ++LS N    
Sbjct: 405 SGADCQFDSTKGKWF--------IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG 456

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL 314
           +IP  L +I+ L  LDLS N+  G+IP++   +TSLR L+L+ NSL  G++P  LG  
Sbjct: 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 13/232 (5%)

Query: 231 FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
                  ++  ++L  LDL +N+     P   L  S L  LDLS N ++ ++P    N+ 
Sbjct: 105 LRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP 163

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
           +L+ LDLS N L    +PK L +L NL +LDLSGN +  ++   ++ LS     +LE LD
Sbjct: 164 NLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLS-----ALEELD 215

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           L  N++   L +SL  L+NL  L+L  N     +PESIGNLS+L  L L NN +  +   
Sbjct: 216 LSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSIS 271

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFN 462
           SLG L++L  LD+SGN     +  +    L     L++     A  L L   
Sbjct: 272 SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 38 NEKEALLKIKASVT-DPSGRLSSW--TGEDCCKWEGVICD 74
          ++++ALL  K+S+  DPSG LSSW  +  D C W GV CD
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 25/192 (13%)

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT---SLRELDLSENSLIGGQIPKDLGS 313
           S+ Q L     L  LDLS N L  +      ++    SL+EL L+ N L    +      
Sbjct: 72  SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131

Query: 314 L----CNLWDLDLSGNDLDGEIIEFVDRLSKC--ANSSLESLDLGQNNLGGFLPNSLGQ- 366
           L      L  L L  N L+G   E    L+K   AN  L+ L+L  N +G     +L + 
Sbjct: 132 LKDLPPALEKLVLGRNRLEGASCE---ALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 367 ---LENLKILQLWGNLFR----GSIPESIGNLSSLRELYLHNNLMDGTI-----PKSLGK 414
                NL++L L  N        ++ E++ +L SL  L L +N +            L  
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248

Query: 415 LSHLVVLDISGN 426
              L+ L +S N
Sbjct: 249 NISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 381 RGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL 440
           RG IP  I  L  L+ + L  N + G IP SLG ++ L VLD+S N + G + E    +L
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQL 489

Query: 441 KNLKELHIAKYSLAPRL 457
            +L+ L++   SL+ R+
Sbjct: 490 TSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 26/60 (43%), Positives = 33/60 (55%)

Query: 243 SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302
           +L  LDLS+N            +  L  LDLS NNL    P+AF+ + SLR LDLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGND 326
            L  LDLS N L      AF  + +L+ LDLS N+L     P+    L +L  LDLSGN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 327 L 327
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 29/58 (50%)

Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
           +L+SLDL  N L      +   L NLK+L L GN      PE+   L SLR L L  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 67/272 (24%), Positives = 101/272 (37%), Gaps = 45/272 (16%)

Query: 117 LNYLDLSLNNFRGS-----RIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNL---SSLQI 168
           L  L LSLN           +   L     L+ L+LS  +   +      +L   SSLQ 
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112

Query: 169 LDLNTFYYSSLESDDVEWL-----SRLSSLQYLNLEGVDLSKAGS-SWVQATNMLPSLSE 222
           L LN    + L    +  L         +L+ L L    L  A   +  +A      L E
Sbjct: 113 LKLNN---NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 223 LHLPACGLFE--FPPLSVV--NFSSLLFLDLSSNDFN----SSIPQWLLNISKLAHLDLS 274
           L+L   G+ +     L+       +L  LDL++N       S++ + L ++  L  L+L 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 275 ANNLQGNIPDAFAN-----MTSLRELDLSENSLIGGQIPKDLGSL---------CNLWDL 320
            NNL      A A+       SL  L LS N +       D G+           +L +L
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDI------TDDGAKDLAEVLAEKESLLEL 283

Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
           DL GN    E  + +        + LESL + 
Sbjct: 284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 88/298 (29%), Positives = 130/298 (43%), Gaps = 25/298 (8%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSS 165
           + S ++L+L  L  LDL+LN  R +   + L  L  L  L+L   +     P      S+
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSN--ISELLELTNLTSLDLDNNNITDIPPLIGLLKSN 141

Query: 166 LQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
           L+ LDL+     SL S     L  L +L+ L+L   DLS         +N    L+ L L
Sbjct: 142 LKELDLSDNKIESLPSP----LRNLPNLKNLDLSFNDLSDLPKLLSNLSN----LNNLDL 193

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
               + + PP   +  S+L  LDLS+N     +   L N+  L+ L+LS NN   ++P++
Sbjct: 194 SGNKISDLPPEIELL-SALEELDLSNNSIIELLSS-LSNLKNLSGLELS-NNKLEDLPES 250

Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
             N+++L  LDLS N +    I   LGSL NL +LDLSGN L   +              
Sbjct: 251 IGNLSNLETLDLSNNQIS--SISS-LGSLTNLRELDLSGNSLSNAL---PLIALLLLLLE 304

Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
           L    L          NS+    N+            S PE++  L SL  L+  +N 
Sbjct: 305 LLLNLLLTLKALELKLNSILLNNNILSNGE------TSSPEALSILESLNNLWTLDNA 356

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 66/274 (24%), Positives = 98/274 (35%), Gaps = 41/274 (14%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-- 159
           +   E+ P +L L+ L     +L       + + L     L+ L LS  +  G IP    
Sbjct: 13  ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQ 71

Query: 160 -----FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQAT 214
                      LQ LDL+           +E L R SSLQ L L    L   G       
Sbjct: 72  SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG------- 124

Query: 215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS----SIPQWLLNISKLAH 270
                   L L A GL + PP       +L  L L  N        ++ + L     L  
Sbjct: 125 --------LRLLAKGLKDLPP-------ALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 271 LDLSANNLQGN----IPDAFANMTSLRELDLSENSLI---GGQIPKDLGSLCNLWDLDLS 323
           L+L+ N +       + +      +L  LDL+ N L       + + L SL +L  L+L 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG 357
            N+L       +       N SL +L L  N++ 
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
           NLK L L  N        +   L +L+ L L  N +    P++   L  L  LD+SGN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	467
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
PLN03150	623	hypothetical protein; Provisional	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG4341	483	consensus F-box protein containing LRR [General fu	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.34
KOG4341	483	consensus F-box protein containing LRR [General fu	98.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.96
KOG4308	478	consensus LRR-containing protein [Function unknown	96.05
KOG4308	478	consensus LRR-containing protein [Function unknown	95.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.61
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.96
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.95
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.0
smart00370	26	LRR Leucine-rich repeats, outliers.	88.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.54
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.22
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	83.97

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.4e-49  Score=432.55  Aligned_cols=401  Identities=35%  Similarity=0.524  Sum_probs=328.3

Q ss_pred             HhhHHHHHHhHhcCCCCCCCCCCCC-CCCCCCcccEEecCCCCCEEEEEcCCCCCC-----------CCcCCCCcccccc
Q 038320           37 QNEKEALLKIKASVTDPSGRLSSWT-GEDCCKWEGVICDNSTGKVVQLKLRSPEIP-----------DSFTDNGTTYQLE  104 (467)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~w~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~-----------~~~~~~~~~~~l~  104 (467)
                      +.|+.+|++||+.+.+|.+.+.+|+ +.+||.|.||+|+. .++|+.+++++..+.           ..+.+++++|.++
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence            4789999999999988887889994 67899999999975 579999999985432           2356677777777


Q ss_pred             cccCcccc-CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCC-CCCC
Q 038320          105 GEISPSVL-DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS-LESD  182 (467)
Q Consensus       105 ~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-l~~~  182 (467)
                      |.+|..+. .+++|++|++++|.+++. +|.  +.+++|++|++++|.+++.+|..++++++|++|++++|.+.. +|..
T Consensus       107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        107 GPIPDDIFTTSSSLRYLNLSNNNFTGS-IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             CcCChHHhccCCCCCEEECcCCccccc-cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence            77776654 777888888887777765 553  457778888888888877778778888888888888887653 3332


Q ss_pred             ChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhc
Q 038320          183 DVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWL  262 (467)
Q Consensus       183 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  262 (467)
                          +.++++|++|++++|.+.+..   +..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+
T Consensus       184 ----~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  256 (968)
T PLN00113        184 ----LTNLTSLEFLTLASNQLVGQI---PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL  256 (968)
T ss_pred             ----hhhCcCCCeeeccCCCCcCcC---ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence                677888888888888877665   3467778888888888888888888888888888888888888888888888


Q ss_pred             cCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhccc
Q 038320          263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA  342 (467)
Q Consensus       263 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~  342 (467)
                      .++++|+.|++++|.+.+.+|..+.++++|++|++++|.+ .+.+|..+..+++|+.|++++|.+.+..|..+..++   
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---  332 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP---  332 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC---
Confidence            8888888888888888888888888888888888888887 677888888888888888888888888887777665   


Q ss_pred             CCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEe
Q 038320          343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD  422 (467)
Q Consensus       343 ~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  422 (467)
                        +|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus       333 --~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~  410 (968)
T PLN00113        333 --RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR  410 (968)
T ss_pred             --CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence              888999998888888888888888899999999988888888888888899999999998888888888999999999


Q ss_pred             CcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          423 ISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       423 l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      +++|++++.+|. .|..++.|+.+++++|+++.
T Consensus       411 L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        411 LQDNSFSGELPS-EFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             CcCCEeeeECCh-hHhcCCCCCEEECcCCcccC
Confidence            999999888888 78889999999999995553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6e-41  Score=366.51  Aligned_cols=357  Identities=33%  Similarity=0.449  Sum_probs=262.4

Q ss_pred             CEEEEEcCCCCCC------------CCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEE
Q 038320           79 KVVQLKLRSPEIP------------DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN  146 (467)
Q Consensus        79 ~v~~l~l~~~~~~------------~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  146 (467)
                      +++.++++++.+.            ..+.+++++|.+++.+|.  +.+++|++|++++|.+++. +|..++++++|++|+
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~  170 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence            5677888765432            125677777888877775  4578888888888888765 777788888888888


Q ss_pred             cCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECC
Q 038320          147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP  226 (467)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~  226 (467)
                      +++|.+.+.+|..+.++++|++|++++|.+....+.   .+.++++|++|++++|.+.+..+   ..+..+++|++|+++
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~  244 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYNNLSGEIP---YEIGGLTSLNHLDLV  244 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh---HHcCcCCccEEECcCCccCCcCC---hhHhcCCCCCEEECc
Confidence            888888777888888888888888888876543222   26777888888888887776553   356777788888888


Q ss_pred             CCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCC
Q 038320          227 ACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ  306 (467)
Q Consensus       227 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  306 (467)
                      +|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+ .+.
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-~~~  323 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-TGK  323 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc-CCc
Confidence            8887777777777788888888888877777777777777888888888877777777777777788888877777 666


Q ss_pred             CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccc
Q 038320          307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE  386 (467)
Q Consensus       307 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  386 (467)
                      .|..+..+++|+.|++++|.+.+..|..+....     +|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|.
T Consensus       324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-----~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~  398 (968)
T PLN00113        324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-----NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK  398 (968)
T ss_pred             CChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-----CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence            777777777777777777777777777666654     677777777777766676666667777777777777766666


Q ss_pred             cccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          387 SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       387 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      .+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.++. .+..+++|+.|++++|
T Consensus       399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS-RKWDMPSLQMLSLARN  462 (968)
T ss_pred             HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh-hhccCCCCcEEECcCc
Confidence            666677777777777777666666666677777777777776666665 4556666666666666

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=286.92  Aligned_cols=375  Identities=23%  Similarity=0.247  Sum_probs=314.3

Q ss_pred             CCcccEEecCCCCCEEEEE---cCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCC
Q 038320           66 CKWEGVICDNSTGKVVQLK---LRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKL  142 (467)
Q Consensus        66 c~w~gv~c~~~~~~v~~l~---l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L  142 (467)
                      |.-.-..|+.  .++..++   +.+...+..+.+++++|.++..-+..|.++++|+.+++..|.++  .+|...+...+|
T Consensus        52 c~~~lldcs~--~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl  127 (873)
T KOG4194|consen   52 CNTRLLDCSD--RELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHL  127 (873)
T ss_pred             CCceeeecCc--cccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh--hcccccccccce
Confidence            4434455543  2333333   23333333456777779999998899999999999999999998  689988888999


Q ss_pred             CEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCE
Q 038320          143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE  222 (467)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~  222 (467)
                      +.|+|.+|.|+..-.+.+.-++.|+.||++.|.++.++...   +..-.++++|+|++|.++.....   .+..+.+|..
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s---fp~~~ni~~L~La~N~It~l~~~---~F~~lnsL~t  201 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS---FPAKVNIKKLNLASNRITTLETG---HFDSLNSLLT  201 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC---CCCCCCceEEeeccccccccccc---cccccchhee
Confidence            99999999998666677889999999999999999988765   66778999999999999988744   6777889999


Q ss_pred             EECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320          223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL  302 (467)
Q Consensus       223 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  302 (467)
                      |.++.|+++..++..|.++++|+.|++..|++.-.--..|.++++|+.|.+..|.+...-...|-.+.++++|+|+.|++
T Consensus       202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            99999999999999999999999999999998754456788999999999999999876677788899999999999998


Q ss_pred             CCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcc
Q 038320          303 IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG  382 (467)
Q Consensus       303 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  382 (467)
                       ...-..++.++.+|+.|++++|.+...-++.+.-..     +|++|+|++|+|+...+..|..+..|++|+|+.|.+..
T Consensus       282 -~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-----kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~  355 (873)
T KOG4194|consen  282 -QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-----KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH  355 (873)
T ss_pred             -hhhhcccccccchhhhhccchhhhheeecchhhhcc-----cceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence             555666888999999999999998877777766555     89999999999998888899999999999999999985


Q ss_pred             cccccccCCCCCCEEECcCCcCcccC---hhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320          383 SIPESIGNLSSLRELYLHNNLMDGTI---PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       383 ~~~~~l~~~~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                      .-...|..+.+|++|||++|.++..+   ...+..+++|+.|++.+|++- .|+...|.+++.|+.|||.+|.|.+..
T Consensus       356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeec
Confidence            55556888999999999999886543   356778999999999999955 566668999999999999999876443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=279.59  Aligned_cols=354  Identities=25%  Similarity=0.256  Sum_probs=302.5

Q ss_pred             CEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCc
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP  158 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  158 (467)
                      +...+|.++..++.     .+...+.|.+|.      .-+.|++++|+++.. -+..|.++++|+.+++..|.++ .+|.
T Consensus        53 ~~~lldcs~~~lea-----~~~~~l~g~lp~------~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~  119 (873)
T KOG4194|consen   53 NTRLLDCSDRELEA-----IDKSRLKGFLPS------QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPR  119 (873)
T ss_pred             CceeeecCcccccc-----ccccccCCcCcc------ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hccc
Confidence            45566777643322     112334555554      457799999999976 6778899999999999999998 8998


Q ss_pred             cCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccc
Q 038320          159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSV  238 (467)
Q Consensus       159 ~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  238 (467)
                      ......+|+.|++.+|.++++..+.   +..++.|+.|||+.|.++....   ..+..-.++++|++++|+++......|
T Consensus       120 f~~~sghl~~L~L~~N~I~sv~se~---L~~l~alrslDLSrN~is~i~~---~sfp~~~ni~~L~La~N~It~l~~~~F  193 (873)
T KOG4194|consen  120 FGHESGHLEKLDLRHNLISSVTSEE---LSALPALRSLDLSRNLISEIPK---PSFPAKVNIKKLNLASNRITTLETGHF  193 (873)
T ss_pred             ccccccceeEEeeeccccccccHHH---HHhHhhhhhhhhhhchhhcccC---CCCCCCCCceEEeeccccccccccccc
Confidence            7777778999999999999887765   7889999999999999988753   355666789999999999999999999


Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320          239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW  318 (467)
Q Consensus       239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  318 (467)
                      ..+.+|..|.++.|+++...+..|.++++|+.|+|..|++.-.--..|.++++|+.|.|..|.+ ..--...|..+.+++
T Consensus       194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKME  272 (873)
T ss_pred             cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccc
Confidence            9999999999999999976667788899999999999999744455689999999999999998 666666788999999


Q ss_pred             EEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEE
Q 038320          319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY  398 (467)
Q Consensus       319 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  398 (467)
                      .|+++.|++....-.++..++     +|+.|++++|.|...-++.+..+++|+.|+|++|.++..-+.+|..+..|++|+
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt-----~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLT-----SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             eeecccchhhhhhcccccccc-----hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence            999999999877667777766     899999999999988888889999999999999999987788899999999999


Q ss_pred             CcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChh--hhCCCCCCCEEeccCCCCCCCc
Q 038320          399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV--HFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       399 Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                      |++|.++-.--..|..+++|++|||+.|.+++.|.+.  .|..+++|+.|.+.+|+|...+
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            9999998666677889999999999999999877543  6889999999999999998655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.7e-34  Score=272.96  Aligned_cols=324  Identities=28%  Similarity=0.371  Sum_probs=216.3

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCC-CCCccCCCCCcCCeeeccCccCCCCCCCCh
Q 038320          106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NIPPSFGNLSSLQILDLNTFYYSSLESDDV  184 (467)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~  184 (467)
                      .+|+.++.+.+|++|.+++|++.  .+-..+..++.|+.+.++.|++.. -+|..+.++..|..||+++|+++.+|..  
T Consensus        46 ~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~--  121 (1255)
T KOG0444|consen   46 QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN--  121 (1255)
T ss_pred             hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh--
Confidence            34555555555555555555544  233444555555555555555532 2455555566666666666666555554  


Q ss_pred             hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccC
Q 038320          185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN  264 (467)
Q Consensus       185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  264 (467)
                        +...+++-+|+|++|++...+.   +.+.+++.|-.|++++|++...+| .+..+..|++|.+++|.+...-...+..
T Consensus       122 --LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPs  195 (1255)
T KOG0444|consen  122 --LEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPS  195 (1255)
T ss_pred             --hhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence              5555666666666666555442   234445555566666666554433 4555566666666666554322233344


Q ss_pred             CCCCCEEeccCCccc-cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320          265 ISKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN  343 (467)
Q Consensus       265 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  343 (467)
                      +++|+.|++++.+-+ ..+|..+..+.+|..+|++.|.+  ..+|+.+.++++|+.|++++|.++.. ....+.+.    
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L--p~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~----  268 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL--PIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWE----  268 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC--CcchHHHhhhhhhheeccCcCceeee-eccHHHHh----
Confidence            556666666655443 34677777788888888888887  56778888888888888888887742 22233333    


Q ss_pred             CCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEe
Q 038320          344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD  422 (467)
Q Consensus       344 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  422 (467)
                       +|++|+++.|+++ .+|+++.+++.|+.|++.+|+++ +.+|..++.+..|+.+..++|.+. .+|+.++.|++|+.|.
T Consensus       269 -~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~  345 (1255)
T KOG0444|consen  269 -NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK  345 (1255)
T ss_pred             -hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence             7888888888888 67888888899999999888876 357888888889999999988886 8899999999999999


Q ss_pred             CcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          423 ISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       423 l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      |+.|++.+ +|+ .+--++.|+.||+.+|
T Consensus       346 L~~NrLiT-LPe-aIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  346 LDHNRLIT-LPE-AIHLLPDLKVLDLREN  372 (1255)
T ss_pred             ccccceee-chh-hhhhcCCcceeeccCC
Confidence            99999775 555 5666899999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-32  Score=262.54  Aligned_cols=336  Identities=27%  Similarity=0.398  Sum_probs=245.4

Q ss_pred             cccc-cccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCC--
Q 038320          101 YQLE-GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS--  177 (467)
Q Consensus       101 ~~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~--  177 (467)
                      |.++ +..|..+..++.+++|.|...++.  .+|..++.+.+|++|.+++|++. .+-..+..++.|+.+++++|++.  
T Consensus        17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKns   93 (1255)
T KOG0444|consen   17 NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNS   93 (1255)
T ss_pred             CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccC
Confidence            6676 456777778888888888777776  47778888888888888888776 44445677778888888877765  


Q ss_pred             CCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCC
Q 038320          178 SLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSS  257 (467)
Q Consensus       178 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  257 (467)
                      .+|.+    +..+..|..|+|++|++...+    ..+..-+++-.|++++|++..++...+.+++.|-.||+++|++. .
T Consensus        94 GiP~d----iF~l~dLt~lDLShNqL~EvP----~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~  164 (1255)
T KOG0444|consen   94 GIPTD----IFRLKDLTILDLSHNQLREVP----TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M  164 (1255)
T ss_pred             CCCch----hcccccceeeecchhhhhhcc----hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence            45555    677788888888888777663    35666677777888888887777777777888888888888776 5


Q ss_pred             cchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHh
Q 038320          258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR  337 (467)
Q Consensus       258 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  337 (467)
                      +|..+..+..|++|.|++|.+...--..+..+++|++|.+++.+-+-..+|..+..+.+|..+|++.|.+. ..|+.+..
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~  243 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK  243 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence            66667777788888888887764333444556677777777776655677777777788888888887776 45666666


Q ss_pred             hhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcc-cChhhhcCCC
Q 038320          338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG-TIPKSLGKLS  416 (467)
Q Consensus       338 ~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~  416 (467)
                      +.     +|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|..++.+++|+.|.+.+|+++- -+|..++++.
T Consensus       244 l~-----~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  244 LR-----NLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             hh-----hhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            65     7888888888877 33445556677888888888887 777888888888888888887753 3777788888


Q ss_pred             CCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCcc
Q 038320          417 HLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLT  458 (467)
Q Consensus       417 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~  458 (467)
                      +|+++...+|. .+.+|+ .+..|..|+.|.|+.|++.+.+.
T Consensus       317 ~Levf~aanN~-LElVPE-glcRC~kL~kL~L~~NrLiTLPe  356 (1255)
T KOG0444|consen  317 QLEVFHAANNK-LELVPE-GLCRCVKLQKLKLDHNRLITLPE  356 (1255)
T ss_pred             hhHHHHhhccc-cccCch-hhhhhHHHHHhcccccceeechh
Confidence            88888887776 456676 67778888888888887665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=1.7e-29  Score=229.68  Aligned_cols=254  Identities=27%  Similarity=0.391  Sum_probs=147.4

Q ss_pred             cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320          187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS  266 (467)
Q Consensus       187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  266 (467)
                      ++.+.+|+.|++..|++...+     ++.++..|++++++.|++.-.+.+...+++++..||+++|++. +.|+.+..++
T Consensus       202 lg~l~~L~~LyL~~Nki~~lP-----ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFLP-----EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             hcchhhhHHHHhhhcccccCC-----CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            444444444444444444332     4555555666666655555544444456666777777777665 5666666666


Q ss_pred             CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCC------------------------------------CCCc--
Q 038320          267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG------------------------------------GQIP--  308 (467)
Q Consensus       267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------------------------------~~~~--  308 (467)
                      +|..||+++|.++ .+|..++++ +|+.|.+.+|.+-+                                    ...+  
T Consensus       276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~  353 (565)
T KOG0472|consen  276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE  353 (565)
T ss_pred             hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence            7777777777666 455566666 67777777665300                                    0000  


Q ss_pred             --ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC-----------------------cCCCcc
Q 038320          309 --KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-----------------------GFLPNS  363 (467)
Q Consensus       309 --~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~-----------------------~~~~~~  363 (467)
                        .......+.+.|++++-+++..+.+.|......   -.+..++++|++.                       +.+|..
T Consensus       354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~---~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~  430 (565)
T KOG0472|consen  354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSE---IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE  430 (565)
T ss_pred             cccchhhhhhhhhhcccccccccCCHHHHHHhhhc---ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence              011222345555555555554333333222100   1223333333221                       134445


Q ss_pred             ccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc-----------------------ccChhhhcCCCCCCE
Q 038320          364 LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD-----------------------GTIPKSLGKLSHLVV  420 (467)
Q Consensus       364 l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-----------------------~~~p~~l~~l~~L~~  420 (467)
                      ++.+++|..|++++|.+. .+|..++.+..|+.|+++.|++.                       ...|+.+.++.+|++
T Consensus       431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            556667777777776665 56666666666777777766543                       223444778899999


Q ss_pred             EeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          421 LDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       421 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ||+.+|.+. .+|. .++++++|+.|++++|++.
T Consensus       510 LDL~nNdlq-~IPp-~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQ-QIPP-ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchh-hCCh-hhccccceeEEEecCCccC
Confidence            999999866 4666 6899999999999999765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=2.4e-29  Score=228.68  Aligned_cols=336  Identities=28%  Similarity=0.388  Sum_probs=253.6

Q ss_pred             cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320          101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE  180 (467)
Q Consensus       101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~  180 (467)
                      |.++ +.|++++++..++.++.++|+++  .+|..++.+..|+.|+.++|.+. .+|+.++.+..|+.++..+|++.++|
T Consensus        78 n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp  153 (565)
T KOG0472|consen   78 NKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLP  153 (565)
T ss_pred             chhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCc
Confidence            6554 56778899999999999999887  58999999999999999999988 77888999999999999999999888


Q ss_pred             CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320          181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ  260 (467)
Q Consensus       181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  260 (467)
                      .+    +.++.+|..+++.+|.+....+    ....++.|++|+...|-++.. |..++.+.+|+-|++..|++. .+| 
T Consensus       154 ~~----~~~~~~l~~l~~~~n~l~~l~~----~~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~-~lP-  222 (565)
T KOG0472|consen  154 ED----MVNLSKLSKLDLEGNKLKALPE----NHIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIR-FLP-  222 (565)
T ss_pred             hH----HHHHHHHHHhhccccchhhCCH----HHHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccc-cCC-
Confidence            87    7888899999999999888764    333488999999988877665 447899999999999999987 666 


Q ss_pred             hccCCCCCCEEeccCCccccccchhh-hCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          261 WLLNISKLAHLDLSANNLQGNIPDAF-ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       261 ~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      .|.++..|++++++.|++. .+|... .+++++..||+.+|++  ...|..+.-+.+|+.||+++|.+++- |..++.+ 
T Consensus       223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-  297 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-  297 (565)
T ss_pred             CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhcccCCccccC-Ccccccc-
Confidence            6889999999999999988 566655 4899999999999998  78899999999999999999999864 3344444 


Q ss_pred             cccCCCccEEECcCCC----------------------------------------------------------------
Q 038320          340 KCANSSLESLDLGQNN----------------------------------------------------------------  355 (467)
Q Consensus       340 ~~~~~~L~~L~L~~n~----------------------------------------------------------------  355 (467)
                           .|+.|-+.+|.                                                                
T Consensus       298 -----hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  298 -----HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             -----eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence                 24444444443                                                                


Q ss_pred             -CCcCCCccccCC---CCCCEEEccCCcCc-----------------------ccccccccCCCCCCEEECcCCcCcccC
Q 038320          356 -LGGFLPNSLGQL---ENLKILQLWGNLFR-----------------------GSIPESIGNLSSLRELYLHNNLMDGTI  408 (467)
Q Consensus       356 -i~~~~~~~l~~l---~~L~~L~l~~n~l~-----------------------~~~~~~l~~~~~L~~L~Ls~n~l~~~~  408 (467)
                       ++. +|+.+...   .-...++++.|++.                       +.+|..++.+++|..|+|++|.+. .+
T Consensus       373 qlt~-VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  373 QLTL-VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             cccc-CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence             221 11111000   11344555555443                       123344556677888888877775 67


Q ss_pred             hhhhcCCCCCCEEeCcCCCC----------------------cccCChhhhCCCCCCCEEeccCCCCCCCccEEEec
Q 038320          409 PKSLGKLSHLVVLDISGNPW----------------------IGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNV  463 (467)
Q Consensus       409 p~~l~~l~~L~~L~l~~n~~----------------------~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~g~~  463 (467)
                      |..+..+..|+.|+++.|+|                      .+.++...+.++..|..|||.+|.|...+...|..
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnm  527 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNM  527 (565)
T ss_pred             chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccc
Confidence            87778888888888888866                      23455535777788888888888887777666553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=4.6e-27  Score=234.17  Aligned_cols=204  Identities=31%  Similarity=0.424  Sum_probs=131.3

Q ss_pred             CCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEE
Q 038320          241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL  320 (467)
Q Consensus       241 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  320 (467)
                      ..+|++++++.|+++ .+|+|+..+.+|+.+....|.++ .+|..+...++|+.|++..|.+  ..+|..+..+++|++|
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTL  315 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeee
Confidence            367899999999987 56799999999999999999985 7777888888888888888887  6677777788888999


Q ss_pred             eccCCcCCCchhhHHHhhh--------------------cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320          321 DLSGNDLDGEIIEFVDRLS--------------------KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF  380 (467)
Q Consensus       321 ~l~~n~l~~~~~~~l~~~~--------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  380 (467)
                      ++..|++...++.++....                    ....+.|+.|++.+|.+++..-..+.++++|+.|+|++|.+
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            9988887754443322211                    01122455555556655555445555555666666666655


Q ss_pred             ccccccc-ccCCCCCCEEECcCCcCcccChhh----------------------hcCCCCCCEEeCcCCCCcccCChhhh
Q 038320          381 RGSIPES-IGNLSSLRELYLHNNLMDGTIPKS----------------------LGKLSHLVVLDISGNPWIGLVTEVHF  437 (467)
Q Consensus       381 ~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~----------------------l~~l~~L~~L~l~~n~~~~~~~~~~~  437 (467)
                      . .+|+. +.++..|++|+||+|+++ .+|..                      +..++.|+.+|++.|.++........
T Consensus       396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhC
Confidence            5 33332 445555555555555554 34444                      45556666666666666543332112


Q ss_pred             CCCCCCCEEeccCC
Q 038320          438 SKLKNLKELHIAKY  451 (467)
Q Consensus       438 ~~l~~L~~l~l~~n  451 (467)
                       .-+.|++||+++|
T Consensus       474 -p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  474 -PSPNLKYLDLSGN  486 (1081)
T ss_pred             -CCcccceeeccCC
Confidence             1256666666666

>PLN03210 Resistant to P

Probab=99.92  E-value=3.6e-23  Score=227.40  Aligned_cols=316  Identities=24%  Similarity=0.315  Sum_probs=178.6

Q ss_pred             cccCCCCCCEEeCCCCCCCC-----CCCCcccCCCC-CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCC
Q 038320          110 SVLDLKHLNYLDLSLNNFRG-----SRIPNFLGSLE-KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDD  183 (467)
Q Consensus       110 ~l~~l~~L~~L~L~~n~i~~-----~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~  183 (467)
                      +|..+++|++|.+..+....     ..+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+..++.. 
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~-  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG-  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc-
Confidence            34555566666554432110     01344444332 3555555555544 444444 345555555555555544433 


Q ss_pred             hhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhcc
Q 038320          184 VEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL  263 (467)
Q Consensus       184 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  263 (467)
                         +..+++|+.|+++++......+    .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ 
T Consensus       630 ---~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        630 ---VHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ---cccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence               4455555555555543322221    24445555555555555444445555555555555555554334444433 


Q ss_pred             CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccc------------------------------cC
Q 038320          264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL------------------------------GS  313 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l------------------------------~~  313 (467)
                      ++++|+.|++++|...+.+|..   .++|+.|++++|.+  ..+|..+                              ..
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i--~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI--EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc--ccccccccccccccccccccchhhccccccccchhhhhc
Confidence            4555555555555433333321   23444555555443  1222211                              12


Q ss_pred             CCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC
Q 038320          314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS  393 (467)
Q Consensus       314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  393 (467)
                      .++|+.|++++|...+.+|..+..++     +|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|..   .++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~-----~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n  847 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLH-----KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN  847 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCC-----CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence            34667777777666666666666554     67777777765444555544 5677777777776655455542   356


Q ss_pred             CCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320          394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       394 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      |+.|+|++|.++ .+|..+..+++|+.|++++|+-...++. .+..+++|+.+++++|.
T Consensus       848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCc
Confidence            788888888886 6788888899999999998776667777 57788888888988884

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=6.8e-23  Score=225.25  Aligned_cols=300  Identities=24%  Similarity=0.272  Sum_probs=236.6

Q ss_pred             CcccCCCCCCCEEEcCCCc------CCCCCCccCCCCC-cCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCC
Q 038320          133 PNFLGSLEKLRYLNLSGAS------FAGNIPPSFGNLS-SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK  205 (467)
Q Consensus       133 ~~~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~  205 (467)
                      +..|.+|++|+.|.+..+.      +...+|..+..++ +|+.|.+.++++..+|..    + ...+|+.|++.++.+..
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~----f-~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN----F-RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc----C-CccCCcEEECcCccccc
Confidence            4568889999999997653      2335677777765 699999999999988876    3 46899999999998876


Q ss_pred             CCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchh
Q 038320          206 AGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA  285 (467)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  285 (467)
                      ..    ..+..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..
T Consensus       626 L~----~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        626 LW----DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cc----cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            53    356789999999999987655555 4788999999999999877889999999999999999998766677776


Q ss_pred             hhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHH-----H--------------------hhhc
Q 038320          286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV-----D--------------------RLSK  340 (467)
Q Consensus       286 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~--------------------~~~~  340 (467)
                      + ++++|+.|++++|.. ...+|..   ..+|+.|++++|.+.. .|..+     .                    ....
T Consensus       701 i-~l~sL~~L~Lsgc~~-L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSR-LKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             C-CCCCCCEEeCCCCCC-ccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhh
Confidence            5 789999999999976 4455542   4578999999988653 22211     0                    0001


Q ss_pred             ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCE
Q 038320          341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV  420 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  420 (467)
                      ..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++++|+.|++++|.....+|..   .++|+.
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence            123578999999998777889999999999999999987666788765 7899999999998765566643   468999


Q ss_pred             EeCcCCCCcccCChhhhCCCCCCCEEeccCC-CCC
Q 038320          421 LDISGNPWIGLVTEVHFSKLKNLKELHIAKY-SLA  454 (467)
Q Consensus       421 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n-~i~  454 (467)
                      |++++|.+. .+|. .+..+++|+.|++++| ++.
T Consensus       851 L~Ls~n~i~-~iP~-si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        851 LNLSRTGIE-EVPW-WIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             eECCCCCCc-cChH-HHhcCCCCCEEECCCCCCcC
Confidence            999999876 5777 6889999999999996 444

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-24  Score=215.67  Aligned_cols=315  Identities=30%  Similarity=0.350  Sum_probs=151.0

Q ss_pred             CCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEE
Q 038320          117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYL  196 (467)
Q Consensus       117 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L  196 (467)
                      |+.|++++|.+.  .+|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|....+|..    +..+++|+.|
T Consensus        47 L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~----~~~lknl~~L  119 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPAS----ISELKNLQYL  119 (1081)
T ss_pred             eEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchh----HHhhhccccc
Confidence            555555555554  34555555555555555555554 4444455555555555555555544444    4555555555


Q ss_pred             ECCCcCCCCCCCch--------hh--------hcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-
Q 038320          197 NLEGVDLSKAGSSW--------VQ--------ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-  259 (467)
Q Consensus       197 ~L~~n~~~~~~~~~--------~~--------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-  259 (467)
                      ++++|.+...+...        ..        .++.. .++.+++..|.+.+.++..+..+..  .|++++|.+..... 
T Consensus       120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls  196 (1081)
T KOG0618|consen  120 DLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS  196 (1081)
T ss_pred             ccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhh
Confidence            55555554432210        00        01111 1344444444444444433333333  35555554431000 


Q ss_pred             ----------------hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320          260 ----------------QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS  323 (467)
Q Consensus       260 ----------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  323 (467)
                                      ......++++.|+.+.|.++...+.  .-..+|+++++++|++  ..+|++++.+.+|+.++..
T Consensus       197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNL--SNLPEWIGACANLEALNAN  272 (1081)
T ss_pred             hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhh--hcchHHHHhcccceEeccc
Confidence                            0001123455555555554422111  1234677777777776  4566777777777777777


Q ss_pred             CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc---------------
Q 038320          324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI---------------  388 (467)
Q Consensus       324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---------------  388 (467)
                      +|+++ ..|..+....     +|+.|....|+++ -+|......+.|++|++..|++. ..|+.+               
T Consensus       273 ~N~l~-~lp~ri~~~~-----~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRIT-----SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             chhHH-hhHHHHhhhh-----hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence            77774 4444444433     4444444444444 23334444455555555554443 222111               


Q ss_pred             -----------cCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          389 -----------GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       389 -----------~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                                 ...+.|+.|.+.+|.+++..-..+.++++||.|+|++|++. ++|...+.+++.|+.|+|++|.++
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence                       01223444555555555554445555555555555555533 333335555555555555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=1.1e-21  Score=201.34  Aligned_cols=263  Identities=25%  Similarity=0.312  Sum_probs=208.8

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      ..-..|+++.+.++  .+|..+.  ++|+.|++.+|+++ .+|.   ..++|++|++++|.++.+|..       .++|+
T Consensus       201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l-------p~sL~  265 (788)
T PRK15387        201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL-------PPGLL  265 (788)
T ss_pred             CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc-------ccccc
Confidence            56778999999998  4788775  48999999999998 5665   358999999999999988742       36899


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEecc
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS  274 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  274 (467)
                      .|++++|.+.....       ..++|+.|++++|+++..+.    ..++|+.|++++|.+++ +|..   ..+|+.|+++
T Consensus       266 ~L~Ls~N~L~~Lp~-------lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls  330 (788)
T PRK15387        266 ELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAY  330 (788)
T ss_pred             eeeccCCchhhhhh-------chhhcCEEECcCCccccccc----cccccceeECCCCcccc-CCCC---cccccccccc
Confidence            99999998876532       23678899999999987643    34789999999999985 4542   2468889999


Q ss_pred             CCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC
Q 038320          275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN  354 (467)
Q Consensus       275 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  354 (467)
                      +|.+++ +|..   ..+|+.|++++|++ . .+|..   .++|+.|++++|.+++ +|..        +.+|+.|++++|
T Consensus       331 ~N~L~~-LP~l---p~~Lq~LdLS~N~L-s-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--------~~~L~~LdLs~N  392 (788)
T PRK15387        331 NNQLTS-LPTL---PSGLQELSVSDNQL-A-SLPTL---PSELYKLWAYNNRLTS-LPAL--------PSGLKELIVSGN  392 (788)
T ss_pred             cCcccc-cccc---ccccceEecCCCcc-C-CCCCC---Ccccceehhhcccccc-Cccc--------ccccceEEecCC
Confidence            999874 5532   25799999999998 3 45543   3578889999999885 3432        137999999999


Q ss_pred             CCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320          355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       355 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~  434 (467)
                      ++++ +|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++.++.
T Consensus       393 ~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        393 RLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            9985 4433   368999999999998 46753   357889999999998 7899999999999999999999988776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=4.5e-21  Score=196.90  Aligned_cols=257  Identities=27%  Similarity=0.312  Sum_probs=203.5

Q ss_pred             cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320          101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE  180 (467)
Q Consensus       101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~  180 (467)
                      +.++ .+|+.+.  ++|+.|++++|+++  .+|..   .++|++|++++|+++ .+|..   .++|+.|++++|.+..++
T Consensus       211 ~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp  278 (788)
T PRK15387        211 SGLT-TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHLP  278 (788)
T ss_pred             CCCC-cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhhh
Confidence            6676 5777665  48999999999998  36653   589999999999998 56653   468999999999988766


Q ss_pred             CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320          181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ  260 (467)
Q Consensus       181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  260 (467)
                      ..       ..+|+.|++++|.++....       ..++|+.|++++|.+.+.+.    ...+|+.|++++|.+++ +|.
T Consensus       279 ~l-------p~~L~~L~Ls~N~Lt~LP~-------~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        279 AL-------PSGLCKLWIFGNQLTSLPV-------LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             hc-------hhhcCEEECcCCccccccc-------cccccceeECCCCccccCCC----CcccccccccccCcccc-ccc
Confidence            42       2578899999999986642       24789999999999987543    23468889999999974 564


Q ss_pred             hccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320          261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK  340 (467)
Q Consensus       261 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  340 (467)
                      .   ..+|+.|++++|++++ +|..   .++|+.|++++|++ . .+|..   ..+|+.|++++|.+++ +|..      
T Consensus       340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L-~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l------  400 (788)
T PRK15387        340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL-T-SLPAL---PSGLKELIVSGNRLTS-LPVL------  400 (788)
T ss_pred             c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccc-c-cCccc---ccccceEEecCCcccC-CCCc------
Confidence            2   2589999999999984 5542   45788999999998 3 46643   3579999999999985 3321      


Q ss_pred             ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320          341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK  414 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~  414 (467)
                        +.+|+.|++++|+++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus       401 --~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        401 --PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             --ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence              1379999999999985 5543   357889999999998 78999999999999999999999988887743

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=3.7e-20  Score=191.35  Aligned_cols=328  Identities=21%  Similarity=0.302  Sum_probs=163.5

Q ss_pred             cccccHhhHHHHHHhHhcCCCCCCC---CCCCC-CCCCCCccc----------------EEecCCCCCEEEEEcCCCCCC
Q 038320           32 IARCVQNEKEALLKIKASVTDPSGR---LSSWT-GEDCCKWEG----------------VICDNSTGKVVQLKLRSPEIP   91 (467)
Q Consensus        32 ~~~~~~~~~~~l~~~~~~~~~~~~~---~~~w~-~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~~~   91 (467)
                      +....+++.+.++++...+..|...   -+.|. +.+.|.-..                |.|.  ++.|+.+..-+....
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~  134 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQA  134 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccc
Confidence            5566678888999988888777531   24584 566785443                4553  355666665542211


Q ss_pred             CC--cCCCCccccc-----ccccC--------cc-----ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc
Q 038320           92 DS--FTDNGTTYQL-----EGEIS--------PS-----VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS  151 (467)
Q Consensus        92 ~~--~~~~~~~~~l-----~~~~~--------~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~  151 (467)
                      +.  ..-+..+...     ....+        ..     -+-..+...|++++++++  .+|..+.  ++|+.|++++|+
T Consensus       135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls~N~  210 (754)
T PRK15370        135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT--TIPACIP--EQITTLILDNNE  210 (754)
T ss_pred             ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC--cCCcccc--cCCcEEEecCCC
Confidence            10  0000000000     00000        00     122245677777777776  3565443  467778888777


Q ss_pred             CCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCc
Q 038320          152 FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF  231 (467)
Q Consensus       152 l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  231 (467)
                      ++ .+|..+.  .+|++|++++|.++.+|..    +  .++|+.|++++|.+......    +  .++|+.|++++|++.
T Consensus       211 Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~----l--~~~L~~L~Ls~N~L~~LP~~----l--~s~L~~L~Ls~N~L~  275 (754)
T PRK15370        211 LK-SLPENLQ--GNIKTLYANSNQLTSIPAT----L--PDTIQEMELSINRITELPER----L--PSALQSLDLFHNKIS  275 (754)
T ss_pred             CC-cCChhhc--cCCCEEECCCCccccCChh----h--hccccEEECcCCccCcCChh----H--hCCCCEEECcCCccC
Confidence            77 4555443  4777777777777766543    2  13567777777766643221    1  135666666666665


Q ss_pred             ccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccc
Q 038320          232 EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL  311 (467)
Q Consensus       232 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l  311 (467)
                      .. |..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.+ + .+|..+
T Consensus       276 ~L-P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L-t-~LP~~l  344 (754)
T PRK15370        276 CL-PENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENAL-T-SLPASL  344 (754)
T ss_pred             cc-ccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcc-c-cCChhh
Confidence            43 32221  356666666665552 333221  345555555555552 33222  23555555555555 2 233332


Q ss_pred             cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc---
Q 038320          312 GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI---  388 (467)
Q Consensus       312 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---  388 (467)
                      .  ++|+.|++++|.++. +|..+.       ++|+.|++++|+++. +|..+.  ..|+.|++++|++. .+|..+   
T Consensus       345 ~--~sL~~L~Ls~N~L~~-LP~~lp-------~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~  410 (754)
T PRK15370        345 P--PELQVLDVSKNQITV-LPETLP-------PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHF  410 (754)
T ss_pred             c--CcccEEECCCCCCCc-CChhhc-------CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence            1  355555555555442 222211       145555555555542 233222  23455555555544 333222   


Q ss_pred             -cCCCCCCEEECcCCcCc
Q 038320          389 -GNLSSLRELYLHNNLMD  405 (467)
Q Consensus       389 -~~~~~L~~L~Ls~n~l~  405 (467)
                       ..++.+..|++.+|.++
T Consensus       411 ~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        411 RGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhcCCCccEEEeeCCCcc
Confidence             22344455555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.82  E-value=4.8e-21  Score=183.47  Aligned_cols=288  Identities=26%  Similarity=0.288  Sum_probs=139.6

Q ss_pred             EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCC----CCccCCCCCcCCeeeccCccCCCCCCC---ChhhcCCCCC
Q 038320          120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGN----IPPSFGNLSSLQILDLNTFYYSSLESD---DVEWLSRLSS  192 (467)
Q Consensus       120 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~---~~~~l~~l~~  192 (467)
                      |+|..+.+++......+..+.+|++|+++++.+++.    ++..+...++|++++++++.+...+..   ....+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            455555555443444455555566666666655321    333344555555555555444321110   0112334455


Q ss_pred             CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC-CCCCEE
Q 038320          193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI-SKLAHL  271 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L  271 (467)
                      |+.|++++|.+..........+...++|++|++++|++.+...                    ..+...+..+ ++|+.|
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------------~~l~~~l~~~~~~L~~L  142 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------------------RLLAKGLKDLPPALEKL  142 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------------------HHHHHHHHhCCCCceEE
Confidence            5555555554443221111111111234444444444432100                    0111222333 455555


Q ss_pred             eccCCccccc----cchhhhCCCCCCEEeCCCCCCCCCC---CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320          272 DLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQ---IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS  344 (467)
Q Consensus       272 ~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  344 (467)
                      ++++|.+++.    ++..+..+++|++|++++|.+....   ++..+..+++|+.|++++|.+++.....+.... ...+
T Consensus       143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~  221 (319)
T cd00116         143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL-ASLK  221 (319)
T ss_pred             EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh-cccC
Confidence            5555555421    2223444555666666666551111   122333445666666666666554443333221 1123


Q ss_pred             CccEEECcCCCCCcCCCcccc-----CCCCCCEEEccCCcCcc----cccccccCCCCCCEEECcCCcCccc----Chhh
Q 038320          345 SLESLDLGQNNLGGFLPNSLG-----QLENLKILQLWGNLFRG----SIPESIGNLSSLRELYLHNNLMDGT----IPKS  411 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~  411 (467)
                      +|++|++++|.+++.....+.     ..+.|++|++++|.+++    .+...+..+++|+++++++|.++..    +...
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            566666666666542111111     23677777777777752    2334455667888888888888754    4444


Q ss_pred             hcCC-CCCCEEeCcCCCC
Q 038320          412 LGKL-SHLVVLDISGNPW  428 (467)
Q Consensus       412 l~~l-~~L~~L~l~~n~~  428 (467)
                      +... +.|+++++.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            4445 6888888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=8.6e-21  Score=181.75  Aligned_cols=236  Identities=26%  Similarity=0.292  Sum_probs=165.0

Q ss_pred             CCCCCCCEEECCCCcCcc------cCCccccCCCCCcEEEccCCcCCCCcchhccCCCC---CCEEeccCCcccc----c
Q 038320          215 NMLPSLSELHLPACGLFE------FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK---LAHLDLSANNLQG----N  281 (467)
Q Consensus       215 ~~l~~L~~L~l~~n~~~~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~  281 (467)
                      ...+.+++++++++.+.+      ..+..+..+++|++|++++|.+.+..+..+..+.+   |+.|++++|.+.+    .
T Consensus        48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence            334445555555444431      12234555777888888887776555555544444   9999999988873    2


Q ss_pred             cchhhhCC-CCCCEEeCCCCCCCCC----CCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCC
Q 038320          282 IPDAFANM-TSLRELDLSENSLIGG----QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNL  356 (467)
Q Consensus       282 ~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i  356 (467)
                      +...+..+ ++|+.|++++|.+ ++    .+...+..+++|++|++++|.+++.....+.... ...++|+.|++++|.+
T Consensus       128 l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i  205 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRNRL-EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCCcC-CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCcc
Confidence            33455667 8999999999998 42    2344567778999999999999875443332211 1124899999999998


Q ss_pred             CcC----CCccccCCCCCCEEEccCCcCccccccccc-----CCCCCCEEECcCCcCcc----cChhhhcCCCCCCEEeC
Q 038320          357 GGF----LPNSLGQLENLKILQLWGNLFRGSIPESIG-----NLSSLRELYLHNNLMDG----TIPKSLGKLSHLVVLDI  423 (467)
Q Consensus       357 ~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l  423 (467)
                      ++.    +...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+++    .+.+.+..+++|+++++
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l  285 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL  285 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence            754    344567789999999999999863333332     24799999999999973    35566777899999999


Q ss_pred             cCCCCccc----CChhhhCCC-CCCCEEeccCCCC
Q 038320          424 SGNPWIGL----VTEVHFSKL-KNLKELHIAKYSL  453 (467)
Q Consensus       424 ~~n~~~~~----~~~~~~~~l-~~L~~l~l~~n~i  453 (467)
                      ++|.++..    +.. .+... +.|+++++.+|++
T Consensus       286 ~~N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         286 RGNKFGEEGAQLLAE-SLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCCcHHHHHHHHH-HHhhcCCchhhcccCCCCC
Confidence            99999855    333 34444 7899999999853

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=1.1e-18  Score=180.55  Aligned_cols=248  Identities=22%  Similarity=0.336  Sum_probs=180.1

Q ss_pred             CCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCC
Q 038320          140 EKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS  219 (467)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~  219 (467)
                      .+...|+++++.++ .+|..+.  ++|+.|++++|.++.+|..    +.  .+|+.|++++|.++.....    +  .++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~----l~--~nL~~L~Ls~N~LtsLP~~----l--~~~  242 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPEN----LQ--GNIKTLYANSNQLTSIPAT----L--PDT  242 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChh----hc--cCCCEEECCCCccccCChh----h--hcc
Confidence            45788999999888 5776553  5799999999999988765    22  4899999999988865322    1  247


Q ss_pred             CCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320          220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE  299 (467)
Q Consensus       220 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  299 (467)
                      |+.|++++|.+... |..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++
T Consensus       243 L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        243 IQEMELSINRITEL-PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS  313 (754)
T ss_pred             ccEEECcCCccCcC-ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence            89999999988754 33332  57899999999887 5666553  578999999998874 454332  4688888998


Q ss_pred             CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCc
Q 038320          300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL  379 (467)
Q Consensus       300 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  379 (467)
                      |.+ . .+|..+  .++|+.|++++|.+++ +|..+.       ++|+.|++++|+++ .+|..+  .++|++|++++|.
T Consensus       314 N~L-t-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-------~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        314 NSL-T-ALPETL--PPGLKTLEAGENALTS-LPASLP-------PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             Ccc-c-cCCccc--cccceeccccCCcccc-CChhhc-------CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCc
Confidence            888 3 355433  3678888999888875 343331       37889999998887 355544  3688899999998


Q ss_pred             CcccccccccCCCCCCEEECcCCcCcccChh----hhcCCCCCCEEeCcCCCCcc
Q 038320          380 FRGSIPESIGNLSSLRELYLHNNLMDGTIPK----SLGKLSHLVVLDISGNPWIG  430 (467)
Q Consensus       380 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~l~~n~~~~  430 (467)
                      ++ .+|..+.  ..|+.|++++|++. .+|.    ....++.+..|++.+|+++.
T Consensus       379 Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        379 LT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             CC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            88 5666553  36888888888887 4444    34445788889999988763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=4.9e-21  Score=174.58  Aligned_cols=274  Identities=26%  Similarity=0.232  Sum_probs=170.8

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccC-ccCCCCCCCChhhcCCCCCCC
Q 038320          116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT-FYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      .-..++|..|+|+.. .+..|+.+++|+.|||++|.|+..-|..|.+++.|..|.+.+ |+++.++...   |.++..|+
T Consensus        68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~---F~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA---FGGLSSLQ  143 (498)
T ss_pred             cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH---hhhHHHHH
Confidence            446678888888854 556788888888888888888877788888888887776666 8888888775   66677777


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCC------------Ccchhc
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS------------SIPQWL  262 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l  262 (467)
                      .|.+.-|++.-..   ...+..++++..|.+.+|.+......++..+..++.+.+..|.+..            ..|..+
T Consensus       144 rLllNan~i~Cir---~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  144 RLLLNANHINCIR---QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHhcChhhhcchh---HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            7777777776554   3366677888888888887777666677777888888777776321            112222


Q ss_pred             cCCCCCCEEeccCCccccccchhhhCCCCCCEE--eC-CCCCCCCCCCcc-cccCCCCCCEEeccCCcCCCchhhHHHhh
Q 038320          263 LNISKLAHLDLSANNLQGNIPDAFANMTSLREL--DL-SENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDGEIIEFVDRL  338 (467)
Q Consensus       263 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L--~L-~~n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~  338 (467)
                      +..+-.....+.+.++...-+..+...  ++.+  .+ +.+.. ....|. .|+.+++|+.|++++|.+++.-+.++...
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            222222223333333322222222111  1111  11 11111 233332 35666677777777777666655665555


Q ss_pred             hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      .     .+++|.|..|++...-...|.++..|++|+|++|+++..-|..|..+.+|.+|+|-.|.+
T Consensus       298 a-----~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  298 A-----ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             h-----hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            5     666677777666644445566666667777777776666666666666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=9.2e-21  Score=172.79  Aligned_cols=278  Identities=22%  Similarity=0.218  Sum_probs=172.6

Q ss_pred             CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320          142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS  221 (467)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~  221 (467)
                      -..++|..|+|+...|..|+.+++|+.||+++|.++.+.+++   |..                           ++.|.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A---F~G---------------------------L~~l~  118 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA---FKG---------------------------LASLL  118 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh---hhh---------------------------hHhhh
Confidence            457888889888666667888888888888888888777664   233                           33333


Q ss_pred             EEECCC-CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCC
Q 038320          222 ELHLPA-CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN  300 (467)
Q Consensus       222 ~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  300 (467)
                      .|-+.+ |+|++.+...|.++..|+.|.+.-|++.....+.+..++++..|.+.+|.+...-...+..+..++++.+..|
T Consensus       119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            332222 5555555556666666666666666666556666666666666666666665333335666666666666666


Q ss_pred             CCCCCC-----------CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCC-CccccCCC
Q 038320          301 SLIGGQ-----------IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL-PNSLGQLE  368 (467)
Q Consensus       301 ~l~~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~-~~~l~~l~  368 (467)
                      .+....           .+..++.........+.+.++.......+....    ..+..=..+.+...+.. ...|..++
T Consensus       199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~----esl~s~~~~~d~~d~~cP~~cf~~L~  274 (498)
T KOG4237|consen  199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL----ESLPSRLSSEDFPDSICPAKCFKKLP  274 (498)
T ss_pred             ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH----HhHHHhhccccCcCCcChHHHHhhcc
Confidence            532211           112222222233333333333332222222110    01111111223233332 34678888


Q ss_pred             CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEec
Q 038320          369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI  448 (467)
Q Consensus       369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l  448 (467)
                      +|+.|++++|++++.-+.+|.....+++|.|..|++...-...|.++..|+.|+|.+|+++...|. .|..+.+|.+|+|
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLFSLSTLNL  353 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-cccccceeeeeeh
Confidence            888888888888887788888888888888888888766667778888888888888888877777 7888888888888


Q ss_pred             cCCCCC
Q 038320          449 AKYSLA  454 (467)
Q Consensus       449 ~~n~i~  454 (467)
                      -.|++.
T Consensus       354 ~~Np~~  359 (498)
T KOG4237|consen  354 LSNPFN  359 (498)
T ss_pred             ccCccc
Confidence            887543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.9e-18  Score=140.45  Aligned_cols=166  Identities=25%  Similarity=0.401  Sum_probs=113.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      +.++.++..|.|++|+++  .+|..+..+.+|+.|++++|++. .+|..+..+++|++|++.-|.+..+|..    |+.+
T Consensus        29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprg----fgs~  101 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRG----FGSF  101 (264)
T ss_pred             ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccc----cCCC
Confidence            456667777778888777  46777777888888888888776 6777778888888888877777766665    6777


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      +.|+.||+.+|++....  .+..+..+..|+.|+++.|.+.-. |..++++++|+.|.+.+|.+. .+|..++.++.|++
T Consensus       102 p~levldltynnl~e~~--lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENS--LPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             chhhhhhcccccccccc--CCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            77777777777665432  133455566666667766666544 335667777777777777665 56677777777777


Q ss_pred             EeccCCccccccchhhhC
Q 038320          271 LDLSANNLQGNIPDAFAN  288 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~  288 (467)
                      |++.+|+++ .+|..+++
T Consensus       178 lhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  178 LHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             Hhcccceee-ecChhhhh
Confidence            777777766 44544443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=4.4e-18  Score=138.28  Aligned_cols=184  Identities=33%  Similarity=0.577  Sum_probs=136.4

Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320          239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW  318 (467)
Q Consensus       239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  318 (467)
                      ..+.+.+.|.++.|.++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++  ...|..|+.+|.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcCccccCCCchhh
Confidence            34555666667777766 45556677777777777777776 5677777777777777777776  56777788888888


Q ss_pred             EEeccCCcCCC-chhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          319 DLDLSGNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       319 ~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      .||+.+|.+.. ..|..+..+.     .|+.|+++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|
T Consensus       106 vldltynnl~e~~lpgnff~m~-----tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL  178 (264)
T ss_pred             hhhccccccccccCCcchhHHH-----HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence            88888777664 3454444444     6888888888887 67888899999999999999888 788888899999999


Q ss_pred             ECcCCcCcccChhhhcCC---CCCCEEeCcCCCCcccCCh
Q 038320          398 YLHNNLMDGTIPKSLGKL---SHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l~~l---~~L~~L~l~~n~~~~~~~~  434 (467)
                      ++.+|+++ .+|..++++   .+=+.+.+..|++...|.+
T Consensus       179 hiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            99999987 666666654   3345667777888776655

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=2.9e-14  Score=147.10  Aligned_cols=150  Identities=35%  Similarity=0.534  Sum_probs=119.7

Q ss_pred             ccccHhhHHHHHHhHhcCCCCCCCCCCCCCCCCC----CcccEEecCC--C--CCEEEEEcCCCCCCCCcCCCCcccccc
Q 038320           33 ARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCC----KWEGVICDNS--T--GKVVQLKLRSPEIPDSFTDNGTTYQLE  104 (467)
Q Consensus        33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~c----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~l~  104 (467)
                      ..+.+.|.++|..+|.++.+|..  .+|.+..||    .|.||.|...  .  .+|+.|+|++             +.+.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------n~L~  431 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------QGLR  431 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC-------------CCcc
Confidence            45667899999999999876542  479775553    7999999532  2  2588999988             8899


Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCC-CCCCC
Q 038320          105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS-LESDD  183 (467)
Q Consensus       105 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-l~~~~  183 (467)
                      |.+|..+..+++|++|+|++|.+.+. +|..++.+++|++|++++|.+++.+|..++++++|++|++++|.++. +|.. 
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-  509 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA-  509 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH-
Confidence            99999999999999999999999987 99999999999999999999999999999999999999999988763 3332 


Q ss_pred             hhhcCC-CCCCCEEECCCcC
Q 038320          184 VEWLSR-LSSLQYLNLEGVD  202 (467)
Q Consensus       184 ~~~l~~-l~~L~~L~L~~n~  202 (467)
                         +.. ..++..+++.+|.
T Consensus       510 ---l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        510 ---LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ---HhhccccCceEEecCCc
Confidence               222 2344555555553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.35  E-value=3e-13  Score=122.49  Aligned_cols=189  Identities=24%  Similarity=0.302  Sum_probs=119.7

Q ss_pred             cCCCCCCEEeccCCccccccch----hhhCCCCCCEEeCCCCCCCCCC-------------CcccccCCCCCCEEeccCC
Q 038320          263 LNISKLAHLDLSANNLQGNIPD----AFANMTSLRELDLSENSLIGGQ-------------IPKDLGSLCNLWDLDLSGN  325 (467)
Q Consensus       263 ~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~-------------~~~~l~~l~~L~~L~l~~n  325 (467)
                      ..+++|+.|+|++|.+....+.    .+..+..|++|.|.+|.+ +..             .....+.-+.|+.+...+|
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3455666666666666433222    234566677777776665 211             1112334567888888888


Q ss_pred             cCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEE
Q 038320          326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLREL  397 (467)
Q Consensus       326 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L  397 (467)
                      ++.+.....+..... ..+.|+.+.+..|.|...    +...+..+++|+.|||.+|.++..    +...+..+++|+.|
T Consensus       168 rlen~ga~~~A~~~~-~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  168 RLENGGATALAEAFQ-SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             ccccccHHHHHHHHH-hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            877665555544332 224788888888877532    234566788888888888887742    33445677888888


Q ss_pred             ECcCCcCcccChhhh-----cCCCCCCEEeCcCCCCccc---CChhhhCCCCCCCEEeccCCCC
Q 038320          398 YLHNNLMDGTIPKSL-----GKLSHLVVLDISGNPWIGL---VTEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l-----~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~n~i  453 (467)
                      ++++|.+.......+     ...|+|++|.+.+|.++..   +........|.|+.|+|++|++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            888888865433222     2468888888888887632   2222455678888888888876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=2e-13  Score=123.66  Aligned_cols=252  Identities=26%  Similarity=0.315  Sum_probs=128.4

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCcCCC----CCCccCCCCCcCCeeeccCccCCCC
Q 038320          107 ISPSVLDLKHLNYLDLSLNNFRGS---RIPNFLGSLEKLRYLNLSGASFAG----NIPPSFGNLSSLQILDLNTFYYSSL  179 (467)
Q Consensus       107 ~~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~l  179 (467)
                      +-+.+..+..++.++|++|.+...   .+...+.+.++|+..++++- ++|    .+|+.+..+                
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l----------------   84 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKML----------------   84 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHH----------------
Confidence            334456677777888888776532   12234455666777666653 222    222221100                


Q ss_pred             CCCChhhcCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccCC-------------ccccCCCCCc
Q 038320          180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFPP-------------LSVVNFSSLL  245 (467)
Q Consensus       180 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~-------------~~l~~l~~L~  245 (467)
                          ...+..+++|+.|+||.|-+...++. +...+.++..|++|++.+|.+.-..-             .....-+.|+
T Consensus        85 ----~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr  160 (382)
T KOG1909|consen   85 ----SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR  160 (382)
T ss_pred             ----HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence                01133344555555555544433221 22233445555555555555432111             1122345666


Q ss_pred             EEEccCCcCCCC----cchhccCCCCCCEEeccCCccccc----cchhhhCCCCCCEEeCCCCCCCCCC----CcccccC
Q 038320          246 FLDLSSNDFNSS----IPQWLLNISKLAHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQ----IPKDLGS  313 (467)
Q Consensus       246 ~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~l~~  313 (467)
                      ++..+.|++...    +...+...+.|+.+.++.|.+...    +...+..+++|+.|||.+|.+ +..    +...++.
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~egs~~LakaL~s  239 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLEGSVALAKALSS  239 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhHHHHHHHHHhcc
Confidence            666666665432    223344556666666666655321    223455667777777777666 221    2234556


Q ss_pred             CCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcC
Q 038320          314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLF  380 (467)
Q Consensus       314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l  380 (467)
                      +++|+.+++++|.+.......+........|+|++|.+.+|.|+..    +...+...+.|+.|+|++|.+
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6667777777777666665555554444455666666666666522    222333455555566655555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=4.2e-12  Score=118.28  Aligned_cols=215  Identities=23%  Similarity=0.171  Sum_probs=136.7

Q ss_pred             hcCCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCCcCCC--CcchhccCCCCCCEEeccCCccccccchh-hhC
Q 038320          213 ATNMLPSLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNS--SIPQWLLNISKLAHLDLSANNLQGNIPDA-FAN  288 (467)
Q Consensus       213 ~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~  288 (467)
                      .-.++.+|+++.+.++.+..... .....+++++.|+++.|-+..  .+......+++|+.|+++.|.+....... -..
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            34567788888888887765433 345567888888888886653  22233456788888888888776332222 134


Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC-CCccccCC
Q 038320          289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF-LPNSLGQL  367 (467)
Q Consensus       289 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~-~~~~l~~l  367 (467)
                      +++|+.|.++.|.+...++...+..+|+|+.|++.+|..-......     ...+..|++|+|++|++-.. .-...+.+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-----TKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-----hhhhhHHhhccccCCcccccccccccccc
Confidence            6778888888888854455555667788888888887521111111     11122688888888876533 12355677


Q ss_pred             CCCCEEEccCCcCccc-cccc-----ccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccC
Q 038320          368 ENLKILQLWGNLFRGS-IPES-----IGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~-~~~~-----l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      +.|+.|+++.+.+... +|+.     ...+++|+.|++..|++.+. .-..+..+++|+.|.+..|.++.+-
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            8888888888877642 2222     23567888888888877532 2244556777788887777776543

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=4.6e-11  Score=123.53  Aligned_cols=107  Identities=35%  Similarity=0.635  Sum_probs=96.9

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCc
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDIS  424 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  424 (467)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCChhhhCC-CCCCCEEeccCCC
Q 038320          425 GNPWIGLVTEVHFSK-LKNLKELHIAKYS  452 (467)
Q Consensus       425 ~n~~~~~~~~~~~~~-l~~L~~l~l~~n~  452 (467)
                      +|+++|.+|. .+.. ...+..+++.+|.
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEecCCc
Confidence            9999999998 5554 3467788999884

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.4e-12  Score=119.87  Aligned_cols=188  Identities=27%  Similarity=0.260  Sum_probs=95.6

Q ss_pred             cCCCCCCCEEEcCCCcCCCCCC--ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh
Q 038320          136 LGSLEKLRYLNLSGASFAGNIP--PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA  213 (467)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  213 (467)
                      -.++.+|+.+.|+++... ..+  .....|++++.||+++|-+...... ......+|+|+.|+++.|.+.......  .
T Consensus       117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-~~i~eqLp~Le~LNls~Nrl~~~~~s~--~  192 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPV-LKIAEQLPSLENLNLSSNRLSNFISSN--T  192 (505)
T ss_pred             hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHH-HHHHHhcccchhcccccccccCCcccc--c
Confidence            345778888888887765 233  2456778888888887766543221 122456777777777777665443221  1


Q ss_pred             cCCCCCCCEEECCCCcCcccC-CccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccccc-chhhhCCCC
Q 038320          214 TNMLPSLSELHLPACGLFEFP-PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAFANMTS  291 (467)
Q Consensus       214 ~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~  291 (467)
                      -..++.|+.|.++.|.++... -..+..+|+|+.|++..|...........-+..|+.|+|++|++...- -...+.++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            124556666666666655321 122334556666666555322111112223345555555555554211 122345555


Q ss_pred             CCEEeCCCCCCCCCCCccc-----ccCCCCCCEEeccCCcC
Q 038320          292 LRELDLSENSLIGGQIPKD-----LGSLCNLWDLDLSGNDL  327 (467)
Q Consensus       292 L~~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~l~~n~l  327 (467)
                      |+.|+++.+.+.+-..|+.     ...+++|++|++..|.+
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            5555555555422222222     23344455555554444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=4.6e-11  Score=117.85  Aligned_cols=197  Identities=38%  Similarity=0.528  Sum_probs=112.4

Q ss_pred             EEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCC-cCCeeeccCccCCCCCCCChhhcCCCCCCCEEE
Q 038320          119 YLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS-SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN  197 (467)
Q Consensus       119 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~  197 (467)
                      .++++.+.+..  ....+..++.++.|++.+|.++ .+|....... +|+.|++++|.+..++..    +..+++|+.|+
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~----~~~l~~L~~L~  169 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSP----LRNLPNLKNLD  169 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhh----hhccccccccc
Confidence            46666665532  2333444567777777777776 5665565663 777777777777766533    66677777777


Q ss_pred             CCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCc
Q 038320          198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN  277 (467)
Q Consensus       198 L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  277 (467)
                      +++|+++....    .....+.|+.|++++|++...++ .......|+++.+++|.+. ..+..+.++.++..+.+.+|+
T Consensus       170 l~~N~l~~l~~----~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         170 LSFNDLSDLPK----LLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             cCCchhhhhhh----hhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence            77777666532    22256666666666666665543 2233344666666666432 333445555555555555555


Q ss_pred             cccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh
Q 038320          278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII  332 (467)
Q Consensus       278 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  332 (467)
                      +. ..+..++.++.++.|++++|.+  ..++. ++.+.+++.|+++++.+....+
T Consensus       244 ~~-~~~~~~~~l~~l~~L~~s~n~i--~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         244 LE-DLPESIGNLSNLETLDLSNNQI--SSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ee-eccchhccccccceeccccccc--ccccc-ccccCccCEEeccCccccccch
Confidence            54 2244455555566666666655  22222 5555566666666655554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=5.7e-12  Score=111.91  Aligned_cols=209  Identities=28%  Similarity=0.290  Sum_probs=128.2

Q ss_pred             CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccC
Q 038320          234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGS  313 (467)
Q Consensus       234 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~  313 (467)
                      .|..+.-+.+|..+.++.+.-.. +......-+.|+++.+.+..+.. .|. +.....+....-..-....|........
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence            34445556677777777664321 11111223567777665544431 111 1111222222111111113334444555


Q ss_pred             CCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC
Q 038320          314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS  393 (467)
Q Consensus       314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  393 (467)
                      ...|+++|+++|.++. +.+...-.     |+++.|++++|.|+..  ..+..+++|+.||+++|.++ .+..+-..+.+
T Consensus       283 Wq~LtelDLS~N~I~~-iDESvKL~-----Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDESVKLA-----PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             Hhhhhhccccccchhh-hhhhhhhc-----cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            6778888888888763 22333333     3788888988888743  34777888899999998887 44455556778


Q ss_pred             CCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320          394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR  456 (467)
Q Consensus       394 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~  456 (467)
                      ++.|.|++|.+..  -..+.++-+|..||+++|++...-....++++|-|+.+.|.+|++...
T Consensus       354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8888899888753  245667788889999999876544444688888899999999977643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=4.9e-11  Score=117.65  Aligned_cols=201  Identities=31%  Similarity=0.441  Sum_probs=141.0

Q ss_pred             CEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC-CCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320          143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS-SLQYLNLEGVDLSKAGSSWVQATNMLPSLS  221 (467)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~  221 (467)
                      ..++...+.+...+ ..+..++.++.|++.+|.++.++..    ..... +|+.|++++|.+....    ..+..+++|+
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~----~~~~~~nL~~L~l~~N~i~~l~----~~~~~l~~L~  166 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPL----IGLLKSNLKELDLSDNKIESLP----SPLRNLPNLK  166 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCcccccCccc----cccchhhcccccccccchhhhh----hhhhcccccc
Confidence            35777777764232 2355667788888888888887775    45553 8888888888877652    2567788888


Q ss_pred             EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCC
Q 038320          222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS  301 (467)
Q Consensus       222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  301 (467)
                      .|++++|++....+ .....++|+.|++++|++. .+|..+.....|+.+.+++|... ..+..+.++.++..+.+.+|+
T Consensus       167 ~L~l~~N~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         167 NLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             ccccCCchhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence            88888888877654 2336778888888888886 56665555666888888888533 345556777788888888877


Q ss_pred             CCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320          302 LIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL  364 (467)
Q Consensus       302 l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l  364 (467)
                      +  ...+..++.++++++|++++|.++....  +....     +++.|++++|.+....+...
T Consensus       244 ~--~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~-----~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         244 L--EDLPESIGNLSNLETLDLSNNQISSISS--LGSLT-----NLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             e--eeccchhccccccceecccccccccccc--ccccC-----ccCEEeccCccccccchhhh
Confidence            6  3335667777788888888888775443  44444     78888888888776554433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=1.1e-12  Score=125.89  Aligned_cols=174  Identities=33%  Similarity=0.473  Sum_probs=111.5

Q ss_pred             CCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEec
Q 038320          243 SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL  322 (467)
Q Consensus       243 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  322 (467)
                      --...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|++++++.|++  ..+|..++.++ |+.|-+
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEE
Confidence            3345667777765 66666666667777777777766 5666777777777777777776  45555555553 666666


Q ss_pred             cCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320          323 SGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN  402 (467)
Q Consensus       323 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n  402 (467)
                      ++|+++ .+|..++...     .|..|+.+.|++. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..||+|.|
T Consensus       151 sNNkl~-~lp~~ig~~~-----tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScN  221 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLP-----TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCN  221 (722)
T ss_pred             ecCccc-cCCcccccch-----hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccC
Confidence            666665 3444444332     5666666666665 44566666666777777666666 5555555 334666677777


Q ss_pred             cCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320          403 LMDGTIPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       403 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      +++ .+|-.|.+++.|++|-|.+|++...
T Consensus       222 kis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  222 KIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             cee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            665 6666667777777777777766543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=2.4e-11  Score=103.35  Aligned_cols=109  Identities=28%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhc-CC
Q 038320          112 LDLKHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL-SR  189 (467)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l-~~  189 (467)
                      .+..++++|+|++|.|+..   +.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|.++.+...    + ..
T Consensus        16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~----l~~~   86 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEG----LDKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHH----HHHH
T ss_pred             ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccc----hHHh
Confidence            4445678888888877732   2343 4677888888888776 343 366777778888887777765432    2 24


Q ss_pred             CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCc
Q 038320          190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF  231 (467)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  231 (467)
                      +++|++|++++|.+.....  ...+..+++|+.|++.+|.+.
T Consensus        87 lp~L~~L~L~~N~I~~l~~--l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNE--LEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE-TTS---SCCC--CGGGGG-TT--EEE-TT-GGG
T ss_pred             CCcCCEEECcCCcCCChHH--hHHHHcCCCcceeeccCCccc
Confidence            6677777777776665432  234445555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=1.8e-12  Score=124.32  Aligned_cols=195  Identities=28%  Similarity=0.389  Sum_probs=156.0

Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEe
Q 038320          217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELD  296 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  296 (467)
                      +.--...+++.|++... |..+..+..|+.+.+..|.+. .+|..+.++..|..++++.|++. .+|..+..++ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            44445678888888765 446777788888889888886 78888999999999999999988 7777777776 89999


Q ss_pred             CCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEcc
Q 038320          297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW  376 (467)
Q Consensus       297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  376 (467)
                      +++|++  ..+|..++..+.|..||.+.|++. ..|..+..+.     +|+.|.+..|++. .+|..+.. -.|..||++
T Consensus       150 ~sNNkl--~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-----slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS  219 (722)
T KOG0532|consen  150 VSNNKL--TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-----SLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS  219 (722)
T ss_pred             EecCcc--ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-----HHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence            999998  678888888899999999999886 4556666666     8999999999888 45666664 468999999


Q ss_pred             CCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCC---CCCCEEeCcCCC
Q 038320          377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKL---SHLVVLDISGNP  427 (467)
Q Consensus       377 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~l~~n~  427 (467)
                      .|+++ .+|..|.++..|++|-|.+|.+. .-|..++..   .=.|+|+..-|+
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            99998 88999999999999999999997 556666543   335677777774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.1e-10  Score=99.31  Aligned_cols=61  Identities=36%  Similarity=0.527  Sum_probs=9.9

Q ss_pred             CCCCCCEEEcCCCcCCCCCCccCC-CCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCC
Q 038320          138 SLEKLRYLNLSGASFAGNIPPSFG-NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK  205 (467)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~  205 (467)
                      +..++++|+|++|.|. .+. .++ .+.+|+.|++++|.++.++.     +..++.|+.|++++|.++.
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT---------TT--EEE--SS---S
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccC-----ccChhhhhhcccCCCCCCc
Confidence            3445566666666655 222 233 34555555555555554432     3334444444444444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=9.4e-11  Score=123.93  Aligned_cols=109  Identities=36%  Similarity=0.378  Sum_probs=73.9

Q ss_pred             CCCCCCEEeCCCCC--CCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          113 DLKHLNYLDLSLNN--FRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       113 ~l~~L~~L~L~~n~--i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      .+++|+.|-+.+|.  +... ...+|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+..+|..    +.++
T Consensus       543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~----l~~L  617 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG----LGNL  617 (889)
T ss_pred             CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH----HHHH
Confidence            34467777777765  3321 334577788888888887766667888888888888888888887777776    7777


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG  229 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~  229 (467)
                      +.|.+|++..+......   +.....+++|++|.+....
T Consensus       618 k~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             Hhhheeccccccccccc---cchhhhcccccEEEeeccc
Confidence            78888877776554443   2233446677777665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=6e-11  Score=105.50  Aligned_cols=212  Identities=21%  Similarity=0.266  Sum_probs=133.7

Q ss_pred             ccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCC
Q 038320          104 EGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDD  183 (467)
Q Consensus       104 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~  183 (467)
                      ...+|..+.-+++|+.+.++.|.-.  .+-+....=+.|+++.+.+..++ ..|. +--...+....-+.  -+......
T Consensus       203 ~~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E--~~t~~G~~  276 (490)
T KOG1259|consen  203 PNRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSE--PSTSNGSA  276 (490)
T ss_pred             ccccccchHHhhhhheeeeeccchh--heeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCC--CCccCCce
Confidence            3445666777788888888877533  23333333466777777766554 1111 11111111111110  00001111


Q ss_pred             hhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhcc
Q 038320          184 VEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL  263 (467)
Q Consensus       184 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  263 (467)
                      ...+.....|+.+||++|.++....    ...-.|+++.|++++|.+.....  +..+++|+.||+++|.++ .+..|-.
T Consensus       277 ~~~~dTWq~LtelDLS~N~I~~iDE----SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~  349 (490)
T KOG1259|consen  277 LVSADTWQELTELDLSGNLITQIDE----SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHL  349 (490)
T ss_pred             EEecchHhhhhhccccccchhhhhh----hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHh
Confidence            1113345678888888888877642    45557888888888888876543  777888999999988876 4556666


Q ss_pred             CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCc
Q 038320          264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE  330 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  330 (467)
                      ++.++++|.+++|.+...  +.+..+-+|..||+.+|++-.-+-...++++|.|+.+.+.+|.+.+.
T Consensus       350 KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            788888999998887632  34666777888899988872222334678888899998888887753

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.00  E-value=2.6e-10  Score=120.66  Aligned_cols=163  Identities=24%  Similarity=0.308  Sum_probs=104.3

Q ss_pred             CccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhc
Q 038320          108 SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL  187 (467)
Q Consensus       108 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l  187 (467)
                      ...|..++.|++|||++|.--+ .+|..++.+-+||+|+++++.+. .+|..++++.+|.+|++..+......+.   ..
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~---i~  638 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG---IL  638 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc---hh
Confidence            3457889999999999976544 49999999999999999999998 8999999999999999998764433322   15


Q ss_pred             CCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCc----EEEccCCcCCCCcchhcc
Q 038320          188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLL----FLDLSSNDFNSSIPQWLL  263 (467)
Q Consensus       188 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~  263 (467)
                      ..+.+|++|.+........ ......+..+.+|+.+.......  ..-..+..++.|.    .+.+.++.. ...+..+.
T Consensus       639 ~~L~~Lr~L~l~~s~~~~~-~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~  714 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSALSND-KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLG  714 (889)
T ss_pred             hhcccccEEEeeccccccc-hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccc
Confidence            5699999999977652222 11234555566666665533322  0011112222222    222222221 12334455


Q ss_pred             CCCCCCEEeccCCccc
Q 038320          264 NISKLAHLDLSANNLQ  279 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~  279 (467)
                      .+.+|+.|.+.++...
T Consensus       715 ~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  715 SLGNLEELSILDCGIS  730 (889)
T ss_pred             cccCcceEEEEcCCCc
Confidence            5666666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=8.3e-11  Score=116.34  Aligned_cols=244  Identities=31%  Similarity=0.307  Sum_probs=142.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320          112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS  191 (467)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~  191 (467)
                      ..+..++.++++.|.+..  +-..+..+++|..|++.+|.+. .+...+..+++|++|++++|.++.+..     +..++
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~  140 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-----LSTLT  140 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-----hhhcc
Confidence            355666677777777653  3344666778888888888776 343336678888888888888776654     56666


Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      .|+.|++++|.++...     .+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+...  ..+..+..+..
T Consensus       141 ~L~~L~l~~N~i~~~~-----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~  212 (414)
T KOG0531|consen  141 LLKELNLSGNLISDIS-----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVL  212 (414)
T ss_pred             chhhheeccCcchhcc-----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHH
Confidence            7888888888777654     45557777888888887776654 2 45667777777777766422  22333334444


Q ss_pred             EeccCCccccccchhhhCCC--CCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320          271 LDLSANNLQGNIPDAFANMT--SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES  348 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~  348 (467)
                      +++..|.++..-+  +..+.  +|+.+++++|.+  ...+..+..+..+..+++..|++...-.  +...     +.+..
T Consensus       213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i--~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~-----~~~~~  281 (414)
T KOG0531|consen  213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRI--SRSPEGLENLKNLPVLDLSSNRISNLEG--LERL-----PKLSE  281 (414)
T ss_pred             hhcccccceeccC--cccchhHHHHHHhcccCcc--ccccccccccccccccchhhcccccccc--cccc-----chHHH
Confidence            4666666552221  11222  366777777766  2222445566667777777666553111  1111     13344


Q ss_pred             EECcCCCCCcC---CCcc-ccCCCCCCEEEccCCcCcc
Q 038320          349 LDLGQNNLGGF---LPNS-LGQLENLKILQLWGNLFRG  382 (467)
Q Consensus       349 L~L~~n~i~~~---~~~~-l~~l~~L~~L~l~~n~l~~  382 (467)
                      +....+.+...   .... ....+.++.+.+..|....
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  282 LWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            44444443311   1111 3445566666666665554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=5.3e-10  Score=110.59  Aligned_cols=243  Identities=30%  Similarity=0.332  Sum_probs=137.7

Q ss_pred             CCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCC
Q 038320          137 GSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM  216 (467)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~  216 (467)
                      ..+..++.++++.|.+. .+-..+..+++|+.|++.+|.+..+...    +..+++|++|++++|.++...     .+..
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~ls~N~I~~i~-----~l~~  138 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENL----LSSLVNLQVLDLSFNKITKLE-----GLST  138 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccc----hhhhhcchheecccccccccc-----chhh
Confidence            45667777778888776 3344477888889999998888876654    567888888888888887764     5566


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCCEEeccCCccccccchhhhCCCCCCEE
Q 038320          217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLREL  295 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  295 (467)
                      ++.|+.|++++|.+....  .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+
T Consensus       139 l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~  213 (414)
T KOG0531|consen  139 LTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLL  213 (414)
T ss_pred             ccchhhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence            666888888888776543  33446777777777777764333 1 35566777777777766522  222233344444


Q ss_pred             eCCCCCCCCCCCcccccCCCC--CCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEE
Q 038320          296 DLSENSLIGGQIPKDLGSLCN--LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL  373 (467)
Q Consensus       296 ~L~~n~l~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  373 (467)
                      ++..|.+ ...  ..+..+..  |+.+++++|.+.... ..+..+.     .+..|++..|++...  ..+...+.+..+
T Consensus       214 ~l~~n~i-~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~-----~l~~l~~~~n~~~~~--~~~~~~~~~~~~  282 (414)
T KOG0531|consen  214 SLLDNKI-SKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLK-----NLPVLDLSSNRISNL--EGLERLPKLSEL  282 (414)
T ss_pred             hcccccc-eec--cCcccchhHHHHHHhcccCcccccc-ccccccc-----cccccchhhcccccc--ccccccchHHHh
Confidence            5555555 111  11112222  566666666554321 1122222     455566665555432  223334444444


Q ss_pred             EccCCcCccc---cccc-ccCCCCCCEEECcCCcCc
Q 038320          374 QLWGNLFRGS---IPES-IGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       374 ~l~~n~l~~~---~~~~-l~~~~~L~~L~Ls~n~l~  405 (467)
                      ....+.+...   .... ....+.+..+.+..|.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             ccCcchhcchhhhhccccccccccccccccccCccc
Confidence            4444443311   1111 233455555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=4.3e-09  Score=73.54  Aligned_cols=59  Identities=42%  Similarity=0.560  Sum_probs=29.4

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL  403 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~  403 (467)
                      +|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444444555555555555555544444444555555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=3.8e-09  Score=73.85  Aligned_cols=59  Identities=32%  Similarity=0.481  Sum_probs=29.7

Q ss_pred             CCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320          393 SLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       393 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      +|++|++++|+++...+..|..+++|++|++++|++.+..+. .|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            445555555555433334455555555555555555433333 45555555555555553

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=9.8e-11  Score=104.07  Aligned_cols=181  Identities=28%  Similarity=0.290  Sum_probs=98.7

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCCh-hhcCCCCCCC
Q 038320          116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDV-EWLSRLSSLQ  194 (467)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~-~~l~~l~~L~  194 (467)
                      .|++|||+...++...+...+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.+.-  +...+. .-+.+|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhHh
Confidence            5777888777766544455566777788888888777766666677777777777766431  111111 0134455555


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCC---CCcchhccCCCCCCEE
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN---SSIPQWLLNISKLAHL  271 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L  271 (467)
                      .|++++|.+...... .....--                        ++|..|+++++.-.   ..+......+++|.+|
T Consensus       264 ~LNlsWc~l~~~~Vt-v~V~his------------------------e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVT-VAVAHIS------------------------ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             hcCchHhhccchhhh-HHHhhhc------------------------hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            555555544333211 0011111                        34455555543211   1122223456777777


Q ss_pred             eccCCcc-ccccchhhhCCCCCCEEeCCCCCCCCCCCcc---cccCCCCCCEEeccCCc
Q 038320          272 DLSANNL-QGNIPDAFANMTSLRELDLSENSLIGGQIPK---DLGSLCNLWDLDLSGND  326 (467)
Q Consensus       272 ~l~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~n~  326 (467)
                      |+++|.. +......+-+++.|++|.++.|..   .+|.   .+...|+|.+|++.++-
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEecccc
Confidence            7766543 323334455677777777777743   3333   34566777777776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.71  E-value=2.6e-09  Score=93.90  Aligned_cols=240  Identities=21%  Similarity=0.196  Sum_probs=140.0

Q ss_pred             CCCCCCEEECCCCcCcccCCc----cccCCCCCcEEEccCCcCC---CCcc-------hhccCCCCCCEEeccCCccccc
Q 038320          216 MLPSLSELHLPACGLFEFPPL----SVVNFSSLLFLDLSSNDFN---SSIP-------QWLLNISKLAHLDLSANNLQGN  281 (467)
Q Consensus       216 ~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~---~~~~-------~~l~~l~~L~~L~l~~n~l~~~  281 (467)
                      .+..+.++++++|.+......    .+.+-.+|+..++++-...   ..++       ..+.+|++|+..+++.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            344455555555554433222    2233455555555542211   1112       2345677777777777777655


Q ss_pred             cchh----hhCCCCCCEEeCCCCCCCCCC----Ccc---------cccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320          282 IPDA----FANMTSLRELDLSENSLIGGQ----IPK---------DLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS  344 (467)
Q Consensus       282 ~~~~----l~~l~~L~~L~L~~n~l~~~~----~~~---------~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  344 (467)
                      .|..    ++..+.|.+|.|++|.+ +..    +-.         ....-|.|+.+....|++..-....+.. ......
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~-~l~sh~  185 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA-LLESHE  185 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH-HHHhhc
Confidence            5443    45667788888887766 211    111         1233467888888888876433322222 222224


Q ss_pred             CccEEECcCCCCCcCC-----CccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCcccChhhh---
Q 038320          345 SLESLDLGQNNLGGFL-----PNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGTIPKSL---  412 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l---  412 (467)
                      .|+++.+..|.|.-.-     .-.+..+.+|+.||+..|.++-.    +...+..++.|+.|.+..|-++......+   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            7888888888776321     11234567888888888887632    23345667778889998888765433222   


Q ss_pred             ---cCCCCCCEEeCcCCCCcccCCh------hhhCCCCCCCEEeccCCCCCCCc
Q 038320          413 ---GKLSHLVVLDISGNPWIGLVTE------VHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       413 ---~~l~~L~~L~l~~n~~~~~~~~------~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                         ...|+|..|...+|-.-+.+..      ..=..+|-|..|.+.+|+|.+..
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence               2468888888888876543321      11235777888888888887543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.1e-09  Score=97.44  Aligned_cols=181  Identities=21%  Similarity=0.187  Sum_probs=130.9

Q ss_pred             CCCCEEeccCCccccc-cchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCc-CCCchhhHHHhhhcccC
Q 038320          266 SKLAHLDLSANNLQGN-IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGND-LDGEIIEFVDRLSKCAN  343 (467)
Q Consensus       266 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~  343 (467)
                      +.|+.+|+++..++-. +-..+..|.+|+.|.+.++++ ++.+...+.+-.+|+.|+++.+. ++......+-    ..+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~----~sc  259 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL----SSC  259 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhccccceeeccccccccchhHHHHHH----Hhh
Confidence            4589999999887633 334567899999999999999 88888888999999999999764 4433322221    223


Q ss_pred             CCccEEECcCCCCCcCCC-cccc-CCCCCCEEEccCCcCc---ccccccccCCCCCCEEECcCC-cCcccChhhhcCCCC
Q 038320          344 SSLESLDLGQNNLGGFLP-NSLG-QLENLKILQLWGNLFR---GSIPESIGNLSSLRELYLHNN-LMDGTIPKSLGKLSH  417 (467)
Q Consensus       344 ~~L~~L~L~~n~i~~~~~-~~l~-~l~~L~~L~l~~n~l~---~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~  417 (467)
                      .+|..|+++.|.++.... ..+. --++|+.|+++++.-.   ..+..-...+|+|.+||||+| .++......+.+++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            489999999998764322 1222 2367999999987422   122222357999999999986 566667778889999


Q ss_pred             CCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       418 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      |++|.++.|..........+...|+|.+|++.++
T Consensus       340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             heeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            9999999997543222225778899999999988

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.59  E-value=1.1e-08  Score=90.07  Aligned_cols=193  Identities=26%  Similarity=0.258  Sum_probs=110.2

Q ss_pred             ccCCCCCcEEEccCCcCCCCcch----hccCCCCCCEEeccCCccccc----cc---------hhhhCCCCCCEEeCCCC
Q 038320          238 VVNFSSLLFLDLSSNDFNSSIPQ----WLLNISKLAHLDLSANNLQGN----IP---------DAFANMTSLRELDLSEN  300 (467)
Q Consensus       238 l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~----~~---------~~l~~l~~L~~L~L~~n  300 (467)
                      +.+||.|+..++++|-+....|.    .+.+-+.|++|.+++|.+...    +-         .-..+-|.|+++....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            33455555555555555444333    234455566666666654311    11         11234567777777777


Q ss_pred             CCCCCCCc---ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEE
Q 038320          301 SLIGGQIP---KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKIL  373 (467)
Q Consensus       301 ~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L  373 (467)
                      ++-.+..-   ..+..-..|+.+.+..|.+.......+.......+.+|+.|++..|.++..    +...+...+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            77322211   113333577888888887776655444443333344788888888877632    33345566778888


Q ss_pred             EccCCcCcccccccc------cCCCCCCEEECcCCcCcccChhh-----h--cCCCCCCEEeCcCCCCcc
Q 038320          374 QLWGNLFRGSIPESI------GNLSSLRELYLHNNLMDGTIPKS-----L--GKLSHLVVLDISGNPWIG  430 (467)
Q Consensus       374 ~l~~n~l~~~~~~~l------~~~~~L~~L~Ls~n~l~~~~p~~-----l--~~l~~L~~L~l~~n~~~~  430 (467)
                      .+..|.++.....++      ...|+|+.|...+|...+.+...     +  ..+|-|..|.+.+|++..
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            888887765433322      13577888888877665432221     1  246778888888888764

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.57  E-value=9.7e-08  Score=61.06  Aligned_cols=38  Identities=53%  Similarity=1.059  Sum_probs=29.5

Q ss_pred             HhhHHHHHHhHhcCC-CCCCCCCCCCC---CCCCCcccEEec
Q 038320           37 QNEKEALLKIKASVT-DPSGRLSSWTG---EDCCKWEGVICD   74 (467)
Q Consensus        37 ~~~~~~l~~~~~~~~-~~~~~~~~w~~---~~~c~w~gv~c~   74 (467)
                      ++|+++|++||+++. +|.+.+.+|+.   .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999998 46678899953   699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=2.2e-09  Score=106.26  Aligned_cols=103  Identities=29%  Similarity=0.325  Sum_probs=56.4

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccccc-ccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeC
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDI  423 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  423 (467)
                      .++.|+|++|++++.  +.+..++.|++|||++|.++ .+|.. ...| +|+.|++++|.++..  ..+.++++|+.||+
T Consensus       188 ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLDL  261 (1096)
T ss_pred             Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccch
Confidence            456666666666543  25556666666666666665 33332 2223 266666666666522  34456666666666


Q ss_pred             cCCCCcccCChhhhCCCCCCCEEeccCCCC
Q 038320          424 SGNPWIGLVTEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       424 ~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i  453 (467)
                      ++|-+.+.-.-..++.+..|+.|+|.||++
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            666555433222344555666666666644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=3.1e-08  Score=88.43  Aligned_cols=84  Identities=19%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             CCCCCCEEEccCCcCcccc-cccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCChh-----hhC
Q 038320          366 QLENLKILQLWGNLFRGSI-PESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTEV-----HFS  438 (467)
Q Consensus       366 ~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~-----~~~  438 (467)
                      .+|++..+.+..|.+...- .......|.+..|+|+.|++.+. ..+.+.++++|..|.++.|++...+...     .++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            3567777777777665322 23455677788889998888643 3467888999999999999887655432     356


Q ss_pred             CCCCCCEEecc
Q 038320          439 KLKNLKELHIA  449 (467)
Q Consensus       439 ~l~~L~~l~l~  449 (467)
                      .+++++.|+=+
T Consensus       277 RL~~v~vLNGs  287 (418)
T KOG2982|consen  277 RLTKVQVLNGS  287 (418)
T ss_pred             eccceEEecCc
Confidence            77888877644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=3.4e-09  Score=104.94  Aligned_cols=125  Identities=34%  Similarity=0.361  Sum_probs=56.9

Q ss_pred             CCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC
Q 038320          292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK  371 (467)
Q Consensus       292 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~  371 (467)
                      |.+.+.+.|.+  .....++.-++.++.|+|++|+++..  +.+..++     +|+.|||++|.++.........+. |.
T Consensus       166 L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~-----~LkhLDlsyN~L~~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  166 LATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLP-----KLKHLDLSYNCLRHVPQLSMVGCK-LQ  235 (1096)
T ss_pred             HhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcc-----cccccccccchhccccccchhhhh-he
Confidence            34444444443  22223333444455555555554431  1333333     455555555555422222222333 55


Q ss_pred             EEEccCCcCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCC
Q 038320          372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       372 ~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~  428 (467)
                      .|.+.+|.++. + ..+.++.+|+.||+++|-+.+. --..+..+..|+.|+|.||++
T Consensus       236 ~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  236 LLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            56666665542 1 2244556666666666655432 112233445566666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.35  E-value=1.8e-08  Score=93.88  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=28.1

Q ss_pred             CCCCEEeCCCCCCCCC-CCCcccCCCCCCCEEEcCCCcCC-CCCCccC-CCCCcCCeeeccC
Q 038320          115 KHLNYLDLSLNNFRGS-RIPNFLGSLEKLRYLNLSGASFA-GNIPPSF-GNLSSLQILDLNT  173 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~-~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l-~~l~~L~~L~l~~  173 (467)
                      ..||.|.++++.-.+. .+-..-.+++++++|++.+|... +..-..+ ..+++|++|++..
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~  199 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS  199 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc
Confidence            4667777777653322 12223344666666666665421 1111111 2455555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=2.6e-07  Score=82.61  Aligned_cols=226  Identities=20%  Similarity=0.176  Sum_probs=116.8

Q ss_pred             CCCEEEcCCCcCCCC--CCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCC
Q 038320          141 KLRYLNLSGASFAGN--IPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP  218 (467)
Q Consensus       141 ~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~  218 (467)
                      .++.|.+.++.+...  ....-..++.++.+|+.+|.++... +....+.++|.|++|+++.|.+...+...+   ....
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs-eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~  121 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS-EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK  121 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH-HHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence            444555666655421  1111134677788888888776422 222235677888888888887776553321   3455


Q ss_pred             CCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCc--chhccC-CCCCCEEeccCCcccc--ccchhhhCCCCC
Q 038320          219 SLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSI--PQWLLN-ISKLAHLDLSANNLQG--NIPDAFANMTSL  292 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~-l~~L~~L~l~~n~l~~--~~~~~l~~l~~L  292 (467)
                      +|+.|-+.+..+.-. ....+..+|.++.|.++.|.+....  ...... -+.+++++..+|....  .....-.-+|++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            677777776655322 2234455666677766666332110  000111 1234444444443220  000111235667


Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC-chhhHHHhhhcccCCCccEEECcCCCCCcCCCc------ccc
Q 038320          293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPN------SLG  365 (467)
Q Consensus       293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~------~l~  365 (467)
                      ..+.+..|.+.+...-.....++.+..|+++.+++.. ...+.+..++     +|..|.++++.+.+.+..      -++
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~-----~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP-----QLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc-----hhheeeccCCcccccccCCcceEEEEe
Confidence            7777777766433333445556666677777777653 1223333333     777777777766543221      234


Q ss_pred             CCCCCCEEEc
Q 038320          366 QLENLKILQL  375 (467)
Q Consensus       366 ~l~~L~~L~l  375 (467)
                      .+++++.|+=
T Consensus       277 RL~~v~vLNG  286 (418)
T KOG2982|consen  277 RLTKVQVLNG  286 (418)
T ss_pred             eccceEEecC
Confidence            5666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.33  E-value=3e-08  Score=92.52  Aligned_cols=283  Identities=18%  Similarity=0.121  Sum_probs=138.7

Q ss_pred             CCCCEEEcCCCcCCCCCC--ccCCCCCcCCeeeccCccCCCCCCCChhhc-CCCCCCCEEECCCcC-CCCCCCchhhhcC
Q 038320          140 EKLRYLNLSGASFAGNIP--PSFGNLSSLQILDLNTFYYSSLESDDVEWL-SRLSSLQYLNLEGVD-LSKAGSSWVQATN  215 (467)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~~~~~~~  215 (467)
                      ..|+.|.++++.-.+.-+  ....+++++++|.+.++.  .+....+..+ ..+++|++|++..|. ++....  .....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--k~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--KYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHH--HHHHH
Confidence            357888888876543322  234578888888887776  3443333222 356777777776632 222210  01223


Q ss_pred             CCCCCCEEECCCCcC-cccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccc--cchhhhCCCCC
Q 038320          216 MLPSLSELHLPACGL-FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN--IPDAFANMTSL  292 (467)
Q Consensus       216 ~l~~L~~L~l~~n~~-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L  292 (467)
                      .+++|+++++++|.- .+.                       .+.....++..++.+.+.||.-.+.  +...-+.+..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~-----------------------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i  270 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGN-----------------------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI  270 (483)
T ss_pred             hhhhHHHhhhccCchhhcC-----------------------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence            455555555555532 210                       1111223333344444443321100  00111233444


Q ss_pred             CEEeCCCCCCCCCCC-cccccCCCCCCEEeccCCc-CCCchhhHHHhhhcccCCCccEEECcCCC-CCcCCCccc-cCCC
Q 038320          293 RELDLSENSLIGGQI-PKDLGSLCNLWDLDLSGND-LDGEIIEFVDRLSKCANSSLESLDLGQNN-LGGFLPNSL-GQLE  368 (467)
Q Consensus       293 ~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-i~~~~~~~l-~~l~  368 (467)
                      ..+++..|...++.. ...-..+..|+.++.+++. +++.+...++.-.    ++|+.+.++.|+ +++.-...+ .+++
T Consensus       271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~----~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC----HNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC----CceEEEeccccchhhhhhhhhhhcCCh
Confidence            455544443322221 1122344566666666543 2333333333322    367777777664 332222222 3566


Q ss_pred             CCCEEEccCCcCcc--cccccccCCCCCCEEECcCCcC-cccC----hhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320          369 NLKILQLWGNLFRG--SIPESIGNLSSLRELYLHNNLM-DGTI----PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       369 ~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l-~~~~----p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  441 (467)
                      .|+.+++..+....  .+...-.+++.|+.+.+++|.. ++..    ...-+....|..+.+++++.+......++..++
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            77777777665432  1222223567777777777743 3321    122234566777777777766555444666777


Q ss_pred             CCCEEeccCCCC
Q 038320          442 NLKELHIAKYSL  453 (467)
Q Consensus       442 ~L~~l~l~~n~i  453 (467)
                      .|+.+++-+|+-
T Consensus       427 ~Leri~l~~~q~  438 (483)
T KOG4341|consen  427 NLERIELIDCQD  438 (483)
T ss_pred             ccceeeeechhh
Confidence            777777777743

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.06  E-value=9.5e-06  Score=68.87  Aligned_cols=106  Identities=20%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             CCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCC
Q 038320          139 LEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP  218 (467)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~  218 (467)
                      +.+...+|+++|.+. .++ .|..+++|.+|.+.+|.++.+.+..   -..+++|+.|.|.+|.+.....  ...+..+|
T Consensus        41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~d--l~pLa~~p  113 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGD--LDPLASCP  113 (233)
T ss_pred             ccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhh--cchhccCC
Confidence            345566677776664 222 3556666677777777666665552   1234556666666665554432  22445555


Q ss_pred             CCCEEECCCCcCcccCC---ccccCCCCCcEEEccC
Q 038320          219 SLSELHLPACGLFEFPP---LSVVNFSSLLFLDLSS  251 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~  251 (467)
                      +|++|.+-+|.+.....   ..+..+++|+.||+..
T Consensus       114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            66666655555543322   1233445555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=1.2e-06  Score=90.95  Aligned_cols=135  Identities=25%  Similarity=0.315  Sum_probs=73.0

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCcCCC-CCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGASFAG-NIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS  192 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~  192 (467)
                      .+|++|+++|.......-|..++ .+|.|+.|.+.+-.+.. .+.....++|+|..||+++++++.+     .+++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-----HHHhcccc
Confidence            46777777765433222222333 36777777777655532 1223345677777777777666655     22667777


Q ss_pred             CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCC------ccccCCCCCcEEEccCCcCCC
Q 038320          193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP------LSVVNFSSLLFLDLSSNDFNS  256 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------~~l~~l~~L~~L~l~~n~l~~  256 (467)
                      |+.|.+.+-.+.....  ...+..+++|+.||+|.........      +.-..+|+|+.||.+++.+..
T Consensus       197 Lq~L~mrnLe~e~~~~--l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQD--LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHHhccCCCCCchhh--HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7777776665554221  3355566666666666554433220      111224555555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=2.3e-06  Score=88.76  Aligned_cols=153  Identities=26%  Similarity=0.355  Sum_probs=80.0

Q ss_pred             CCCEEeCCCCCCCCCCCccccc-CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320          291 SLRELDLSENSLIGGQIPKDLG-SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN  369 (467)
Q Consensus       291 ~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~  369 (467)
                      +|++|++++........+..++ .+|+|++|.+++-.+....   +..+. .++|+|..||+++.+++..  ..++.+++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc-~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQLC-ASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHHh-hccCccceeecCCCCccCc--HHHhcccc
Confidence            4555555554332333333333 3456666666554443221   11111 2334666666666666533  45566677


Q ss_pred             CCEEEccCCcCcc-cccccccCCCCCCEEECcCCcCccc--Ch----hhhcCCCCCCEEeCcCCCCcccCChhhhCCCCC
Q 038320          370 LKILQLWGNLFRG-SIPESIGNLSSLRELYLHNNLMDGT--IP----KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKN  442 (467)
Q Consensus       370 L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~--~p----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  442 (467)
                      |++|.+.+-.+.. ..-..+.++++|+.||+|..+....  +.    +.-..+|+|+.||.+++.+.+.+.+.....-|+
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            7777666655542 1122345677777777776543321  11    222346777888888777776665544555555


Q ss_pred             CCEEecc
Q 038320          443 LKELHIA  449 (467)
Q Consensus       443 L~~l~l~  449 (467)
                      |+.+..-
T Consensus       277 L~~i~~~  283 (699)
T KOG3665|consen  277 LQQIAAL  283 (699)
T ss_pred             Hhhhhhh
Confidence            6555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=2.1e-07  Score=73.69  Aligned_cols=107  Identities=26%  Similarity=0.385  Sum_probs=60.9

Q ss_pred             CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320          193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD  272 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  272 (467)
                      +..++|++|.+.... +.+..+.....|+..++++|.+...++.....++.++.|++++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~-davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIA-DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHH-HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            444455555443221 11334444555556666666666655555555566666666666665 5566666666666666


Q ss_pred             ccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320          273 LSANNLQGNIPDAFANMTSLRELDLSENSL  302 (467)
Q Consensus       273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  302 (467)
                      ++.|.+. ..|..+..+.++.+|+..+|..
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            6666665 4455555566666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=4.1e-06  Score=53.58  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=15.3

Q ss_pred             CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCC
Q 038320          141 KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS  177 (467)
Q Consensus       141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  177 (467)
                      +|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33333444444444444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.98  E-value=2.5e-07  Score=73.25  Aligned_cols=59  Identities=27%  Similarity=0.427  Sum_probs=27.6

Q ss_pred             CCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCC
Q 038320          367 LENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP  427 (467)
Q Consensus       367 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  427 (467)
                      ++.+++|++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|+.-+|.
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            334444444444444 34444444455555555555444 344444444444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.4e-05  Score=51.11  Aligned_cols=34  Identities=41%  Similarity=0.643  Sum_probs=13.2

Q ss_pred             CCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320          394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       394 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~  428 (467)
                      |++|++++|+++ .+|..+.++++|+.|++++|++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            444444444443 2333344444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=6.5e-05  Score=72.22  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCc-cCCCCCCCChhhcC
Q 038320          110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF-YYSSLESDDVEWLS  188 (467)
Q Consensus       110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~~~~l~~~~~~~l~  188 (467)
                      .+..++++++|++++|.++  .+|. +  -.+|++|.+++|.-...+|..+  .++|++|++++| .+..+|        
T Consensus        47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------  111 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------  111 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------
Confidence            3555688999999999777  4562 1  2368999998865544666544  357888998887 444333        


Q ss_pred             CCCCCCEEECCCcCCCCCCCchhhhcCCC-CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320          189 RLSSLQYLNLEGVDLSKAGSSWVQATNML-PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK  267 (467)
Q Consensus       189 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  267 (467)
                        ++|+.|++..+.....        ..+ ++|+.|.+.+++........-.-.++|++|++++|... ..|..+.  .+
T Consensus       112 --~sLe~L~L~~n~~~~L--------~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~S  178 (426)
T PRK15386        112 --ESVRSLEIKGSATDSI--------KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ES  178 (426)
T ss_pred             --cccceEEeCCCCCccc--------ccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--cc
Confidence              2477777765543321        112 24666666433211000000001256777777776644 2333222  46


Q ss_pred             CCEEeccCC
Q 038320          268 LAHLDLSAN  276 (467)
Q Consensus       268 L~~L~l~~n  276 (467)
                      |+.|+++.+
T Consensus       179 Lk~L~ls~n  187 (426)
T PRK15386        179 LQSITLHIE  187 (426)
T ss_pred             CcEEEeccc
Confidence            677776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=2.6e-05  Score=66.25  Aligned_cols=110  Identities=24%  Similarity=0.242  Sum_probs=78.1

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      .....+||++|.+..   ...+..++.|.+|.+++|.|+..-|..-..+++|..|.+.+|.+..+..-  ..+..||+|+
T Consensus        42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL--DPLASCPKLE  116 (233)
T ss_pred             cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc--chhccCCccc
Confidence            455678888887753   24566788888888888888855555445577888888888887765432  2277888888


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG  229 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~  229 (467)
                      +|.+-+|.++....--.-.+..+|+|+.||+.+-.
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88888888776543323356678889999887654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.75  E-value=1.6e-05  Score=70.43  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=67.1

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCC--cCCCCCCccCCCCCcCCeeeccCccCCCCCCCCh
Q 038320          107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA--SFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDV  184 (467)
Q Consensus       107 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~  184 (467)
                      +..-.-.+..|+.|++.+..++.   -..+..|++|++|.++.|  .+++.++.....+++|+++++++|++..+..  +
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst--l  109 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST--L  109 (260)
T ss_pred             cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc--c
Confidence            33344455666777776666552   234556778888888888  5555565555667888888888887764222  1


Q ss_pred             hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEE
Q 038320          185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH  224 (467)
Q Consensus       185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~  224 (467)
                      ..+..+.+|..|++.+|..+.....-...+.-+++|++|+
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            2255666677777776665554322223334445555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00013  Score=70.10  Aligned_cols=137  Identities=15%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             ccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCC-cCCCchhhHHHhhhc
Q 038320          262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN-DLDGEIIEFVDRLSK  340 (467)
Q Consensus       262 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~~~~  340 (467)
                      +..+.+++.|++++|.++ .+|.   -.++|+.|.+++|.- -..+|..+  .++|+.|++++| .+. ..|        
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP--------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEIS-GLP--------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCccccc-ccc--------
Confidence            445788999999999877 4552   234799999998655 34555544  358999999988 432 222        


Q ss_pred             ccCCCccEEECcCCCCCcCCCccccCC-CCCCEEEccCCcCc--ccccccccCCCCCCEEECcCCcCcccChhhhcCCCC
Q 038320          341 CANSSLESLDLGQNNLGGFLPNSLGQL-ENLKILQLWGNLFR--GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSH  417 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~l~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  417 (467)
                         +.|+.|++..+....     +..+ ++|+.|.+.++...  ..+|..  -.++|++|++++|... ..|..+-  .+
T Consensus       112 ---~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~S  178 (426)
T PRK15386        112 ---ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ES  178 (426)
T ss_pred             ---cccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--cc
Confidence               368888887665432     1222 35777777543311  111211  1267999999988765 3444332  58


Q ss_pred             CCEEeCcCCC
Q 038320          418 LVVLDISGNP  427 (467)
Q Consensus       418 L~~L~l~~n~  427 (467)
                      |+.|+++.|.
T Consensus       179 Lk~L~ls~n~  188 (426)
T PRK15386        179 LQSITLHIEQ  188 (426)
T ss_pred             CcEEEecccc
Confidence            8999988764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.49  E-value=3.3e-05  Score=78.37  Aligned_cols=18  Identities=22%  Similarity=-0.068  Sum_probs=11.3

Q ss_pred             cccCCCCCCEEEccCCcC
Q 038320          363 SLGQLENLKILQLWGNLF  380 (467)
Q Consensus       363 ~l~~l~~L~~L~l~~n~l  380 (467)
                      .+..+++++.+.+..+..
T Consensus       357 ~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  357 ILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             HHhcCCCcchhhhhhhhc
Confidence            334666777777776663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=1.3e-05  Score=71.42  Aligned_cols=99  Identities=24%  Similarity=0.296  Sum_probs=74.8

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeC
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDI  423 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l  423 (467)
                      +.+.|++.+|.++++  .....|+.|++|.|+-|.++..  ..+..|++|++|.|..|.|.+. -..-+.++|+|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            678888888888865  3456788999999999998843  3367899999999999988743 2245678999999999


Q ss_pred             cCCCCcccCChh----hhCCCCCCCEEe
Q 038320          424 SGNPWIGLVTEV----HFSKLKNLKELH  447 (467)
Q Consensus       424 ~~n~~~~~~~~~----~~~~l~~L~~l~  447 (467)
                      ..|+-.|.-+..    .+.-+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            999888766532    344567777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00015  Score=64.29  Aligned_cols=104  Identities=25%  Similarity=0.234  Sum_probs=56.8

Q ss_pred             ccEEECcCCCCCcCCCccccCCCCCCEEEccCC--cCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEe
Q 038320          346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGN--LFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLD  422 (467)
Q Consensus       346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~  422 (467)
                      |+.|++.+..++..  ..+..+++|+.|.++.|  ...+.++.....+|+|+++++++|++... -...+..+.+|..|+
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            34444444443321  23445667777777777  55555544455567777777777766521 112344566677777


Q ss_pred             CcCCCCcccCCh--hhhCCCCCCCEEeccCC
Q 038320          423 ISGNPWIGLVTE--VHFSKLKNLKELHIAKY  451 (467)
Q Consensus       423 l~~n~~~~~~~~--~~~~~l~~L~~l~l~~n  451 (467)
                      +..|..+..--.  ..|.-+++|.+++-...
T Consensus       123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cccCCccccccHHHHHHHHhhhhcccccccc
Confidence            777766552221  14555666666654443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=1.5e-05  Score=70.95  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=75.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320          113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS  192 (467)
Q Consensus       113 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~  192 (467)
                      .+.+.+.|++.+|.++++   ....+|+.|++|.|+-|+|+. +. .+..|++|+.|.|..|.+..+..  +..+.++++
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~sldE--L~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIESLDE--LEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccccHHH--HHHHhcCch
Confidence            355778888889888755   345678999999999999873 32 37789999999999988876543  344788899


Q ss_pred             CCEEECCCcCCCCCCCc--hhhhcCCCCCCCEEE
Q 038320          193 LQYLNLEGVDLSKAGSS--WVQATNMLPSLSELH  224 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~~--~~~~~~~l~~L~~L~  224 (467)
                      |+.|.|..|.-.+....  -...+..+|+|++||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999988876554321  122345577777775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.06  E-value=0.0023  Score=51.94  Aligned_cols=37  Identities=14%  Similarity=0.219  Sum_probs=11.9

Q ss_pred             cCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccC
Q 038320          136 LGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT  173 (467)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (467)
                      |.++++|+.+.+.. .+...-...|.++++|+.+.+.+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            44444455554442 22212222344444444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.05  E-value=0.00017  Score=73.03  Aligned_cols=225  Identities=24%  Similarity=0.153  Sum_probs=107.0

Q ss_pred             CCCCCCEEECCCCcCccc--CCccccCCCCCcEEEccCC-cCCCCc----chhccCCCCCCEEeccCCc-cccccchhhh
Q 038320          216 MLPSLSELHLPACGLFEF--PPLSVVNFSSLLFLDLSSN-DFNSSI----PQWLLNISKLAHLDLSANN-LQGNIPDAFA  287 (467)
Q Consensus       216 ~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~  287 (467)
                      .++.|+.+.+.++.-...  .......++.|+.|+++++ ......    ......+++|+.++++.+. +++..-..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356677776666633222  1233445667777777652 111111    1122345666666666665 4433333333


Q ss_pred             C-CCCCCEEeCCCCC-CCCCCCcccccCCCCCCEEeccCCcCC-CchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320          288 N-MTSLRELDLSENS-LIGGQIPKDLGSLCNLWDLDLSGNDLD-GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL  364 (467)
Q Consensus       288 ~-l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l  364 (467)
                      . +++|++|.+.+|. ++...+......++.|++|+++++... +.....+..    .+++++.|.+....         
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~----~c~~l~~l~~~~~~---------  332 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK----NCPNLRELKLLSLN---------  332 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH----hCcchhhhhhhhcC---------
Confidence            2 6666666666555 322233333445566666666665433 111111111    12244443332221         


Q ss_pred             cCCCCCCEEEccCCcCc---ccccccccCCCCCCEEECcCCcCcccC-hhhhcCCCCC--------------CEEeCcCC
Q 038320          365 GQLENLKILQLWGNLFR---GSIPESIGNLSSLRELYLHNNLMDGTI-PKSLGKLSHL--------------VVLDISGN  426 (467)
Q Consensus       365 ~~l~~L~~L~l~~n~l~---~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L--------------~~L~l~~n  426 (467)
                       .++.++.+.+.+....   .........+++++.+.+..+...... ...+..|+.|              +.|+++.+
T Consensus       333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~  411 (482)
T KOG1947|consen  333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC  411 (482)
T ss_pred             -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence             1334444444443321   122223457788888888777744322 2444555544              66666666


Q ss_pred             CCcccCChhhhCC-CCCCCEEeccCCCCC
Q 038320          427 PWIGLVTEVHFSK-LKNLKELHIAKYSLA  454 (467)
Q Consensus       427 ~~~~~~~~~~~~~-l~~L~~l~l~~n~i~  454 (467)
                      .....-.-..... +..+..+++.++...
T Consensus       412 ~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  412 RLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ccccccchHHHhhhhhccccCCccCcccc
Confidence            5433322212333 555666777666443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.96  E-value=0.0021  Score=52.23  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=34.9

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCc
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDIS  424 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  424 (467)
                      +|+.+.+..+ +.......+..+++++.+.+.+ .+.......|..+++|+.+++..+ +.......+.++ +|+.+.+.
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            4455554442 3323334455555666666654 332222334555666666666544 332333445555 66666665


Q ss_pred             CCCCcccCChhhhCCCCCCC
Q 038320          425 GNPWIGLVTEVHFSKLKNLK  444 (467)
Q Consensus       425 ~n~~~~~~~~~~~~~l~~L~  444 (467)
                      . .+. .++...|.++++|+
T Consensus       112 ~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  112 S-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             T-B-S-S----GGG------
T ss_pred             C-Ccc-EECCccccccccCC
Confidence            4 222 23333566665553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.05  E-value=0.0001  Score=73.43  Aligned_cols=189  Identities=29%  Similarity=0.286  Sum_probs=108.4

Q ss_pred             CCcEEEccCCcCCCCcc----hhccCCCCCCEEeccCCccccccchhh----hCC-CCCCEEeCCCCCCCC---CCCccc
Q 038320          243 SLLFLDLSSNDFNSSIP----QWLLNISKLAHLDLSANNLQGNIPDAF----ANM-TSLRELDLSENSLIG---GQIPKD  310 (467)
Q Consensus       243 ~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~---~~~~~~  310 (467)
                      .+..+++.+|.+.....    ..+...+.|+.|++++|.+.+.-...+    ... ..+++|++..|.+..   ..+...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            36778888888765433    344567788888888888774332222    222 456667777776621   123445


Q ss_pred             ccCCCCCCEEeccCCcCCCchhhHHHhhhc---ccCCCccEEECcCCCCCcC----CCccccCCCC-CCEEEccCCcCcc
Q 038320          311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSK---CANSSLESLDLGQNNLGGF----LPNSLGQLEN-LKILQLWGNLFRG  382 (467)
Q Consensus       311 l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~---~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~-L~~L~l~~n~l~~  382 (467)
                      +.....++.++++.|.+.......+.....   ....++++|++.+|.++..    +...+...+. +..|++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            556677788888887765322221111111   1223677777777776632    1223344444 5567777777654


Q ss_pred             c----ccccccCC-CCCCEEECcCCcCccc----ChhhhcCCCCCCEEeCcCCCCccc
Q 038320          383 S----IPESIGNL-SSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       383 ~----~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      .    ....+..+ +.+++++++.|.+++.    +.+.+..++.++++.++.|++...
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            3    12233344 5667777777777654    344455566777777777776644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.85  E-value=0.0001  Score=73.44  Aligned_cols=211  Identities=28%  Similarity=0.298  Sum_probs=142.9

Q ss_pred             CCCEEECCCCcCcccCC----ccccCCCCCcEEEccCCcCCCCcch----hccCC-CCCCEEeccCCccccc----cchh
Q 038320          219 SLSELHLPACGLFEFPP----LSVVNFSSLLFLDLSSNDFNSSIPQ----WLLNI-SKLAHLDLSANNLQGN----IPDA  285 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~  285 (467)
                      .+..+.+.+|.+.....    ..+...+.|+.|++++|.+.+.-..    .+... ..++.|++..|.+++.    +.+.
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            37788899998876544    3445678999999999998743222    22232 4577788888877653    4455


Q ss_pred             hhCCCCCCEEeCCCCCCCCC---CCccccc----CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCc
Q 038320          286 FANMTSLRELDLSENSLIGG---QIPKDLG----SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG  358 (467)
Q Consensus       286 l~~l~~L~~L~L~~n~l~~~---~~~~~l~----~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~  358 (467)
                      +.....++.++++.|.+...   .++..+.    ...++++|++.+|.++......+..........+..|++..|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            66688899999999987311   1122333    4678999999999988655444433332222237779999998875


Q ss_pred             C----CCccccCC-CCCCEEEccCCcCcccc----cccccCCCCCCEEECcCCcCccc----ChhhhcCCCCCCEEeCcC
Q 038320          359 F----LPNSLGQL-ENLKILQLWGNLFRGSI----PESIGNLSSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISG  425 (467)
Q Consensus       359 ~----~~~~l~~l-~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~  425 (467)
                      .    ....+..+ +.+++++++.|.+++..    ...+..++.++.+.+++|.+.+.    +-..+.....+..+.+.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~  327 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG  327 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence            4    33344555 67899999999998644    34456788999999999998764    233444556677777776


Q ss_pred             CCCc
Q 038320          426 NPWI  429 (467)
Q Consensus       426 n~~~  429 (467)
                      +...
T Consensus       328 ~~~~  331 (478)
T KOG4308|consen  328 TGKG  331 (478)
T ss_pred             cCcc
Confidence            5543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.99  E-value=0.008  Score=31.86  Aligned_cols=19  Identities=53%  Similarity=0.997  Sum_probs=9.6

Q ss_pred             CCEEEcCCCcCCCCCCccCC
Q 038320          142 LRYLNLSGASFAGNIPPSFG  161 (467)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~  161 (467)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.90  E-value=0.011  Score=31.26  Aligned_cols=11  Identities=27%  Similarity=0.205  Sum_probs=4.2

Q ss_pred             CEEECcCCcCc
Q 038320          395 RELYLHNNLMD  405 (467)
Q Consensus       395 ~~L~Ls~n~l~  405 (467)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.59  E-value=0.074  Score=26.07  Aligned_cols=11  Identities=45%  Similarity=0.640  Sum_probs=3.5

Q ss_pred             CCEEEcCCCcC
Q 038320          142 LRYLNLSGASF  152 (467)
Q Consensus       142 L~~L~L~~n~l  152 (467)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.61  E-value=0.056  Score=46.51  Aligned_cols=33  Identities=33%  Similarity=0.370  Sum_probs=14.4

Q ss_pred             CccEEECcCC-CCCcCCCccccCCCCCCEEEccC
Q 038320          345 SLESLDLGQN-NLGGFLPNSLGQLENLKILQLWG  377 (467)
Q Consensus       345 ~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~  377 (467)
                      +|+.|++++| +||+.--.++..+++|+.|.+.+
T Consensus       152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             chheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            4444444444 24433333444444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.96  E-value=0.04  Score=47.37  Aligned_cols=83  Identities=23%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccc-ccccc-CCCCCCEEECcCC-cCcccChhhhcCCCCCCEE
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI-PESIG-NLSSLRELYLHNN-LMDGTIPKSLGKLSHLVVL  421 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~-~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L  421 (467)
                      .++.++-+++.|..+--..+..++.++.|.+.+|.--+.. -+.++ -.++|+.|++++| +||+.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            5788888888887766677778888888888888643211 11111 3578899999987 6777777788888888888


Q ss_pred             eCcCCC
Q 038320          422 DISGNP  427 (467)
Q Consensus       422 ~l~~n~  427 (467)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            887644

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.95  E-value=0.068  Score=28.87  Aligned_cols=18  Identities=28%  Similarity=0.278  Sum_probs=7.9

Q ss_pred             CCCCEEECcCCcCcccCh
Q 038320          392 SSLRELYLHNNLMDGTIP  409 (467)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~p  409 (467)
                      ++|++|+|++|++++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            445555555555544433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.00  E-value=0.14  Score=27.54  Aligned_cols=21  Identities=38%  Similarity=0.340  Sum_probs=10.6

Q ss_pred             CCCCEEeccCCcCCCchhhHH
Q 038320          315 CNLWDLDLSGNDLDGEIIEFV  335 (467)
Q Consensus       315 ~~L~~L~l~~n~l~~~~~~~l  335 (467)
                      ++|++|++++|.+++..+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            456666666666655544443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.54  E-value=0.32  Score=26.73  Aligned_cols=18  Identities=39%  Similarity=0.403  Sum_probs=8.8

Q ss_pred             CcCCeeeccCccCCCCCC
Q 038320          164 SSLQILDLNTFYYSSLES  181 (467)
Q Consensus       164 ~~L~~L~l~~n~~~~l~~  181 (467)
                      ++|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555544443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.54  E-value=0.32  Score=26.73  Aligned_cols=18  Identities=39%  Similarity=0.403  Sum_probs=8.8

Q ss_pred             CcCCeeeccCccCCCCCC
Q 038320          164 SSLQILDLNTFYYSSLES  181 (467)
Q Consensus       164 ~~L~~L~l~~n~~~~l~~  181 (467)
                      ++|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555544443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.50  E-value=0.0095  Score=52.17  Aligned_cols=88  Identities=15%  Similarity=0.109  Sum_probs=54.4

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCC
Q 038320          110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSR  189 (467)
Q Consensus       110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~  189 (467)
                      .+..+...+.||++.|++-  .+-.-+..++.|..|+++.|.+. ..|..++....+++++..+|..+..|..    ++.
T Consensus        37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s----~~k  109 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS----QKK  109 (326)
T ss_pred             hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc----ccc
Confidence            4555666666666666554  23444555666666777766665 5666666666666677666666666655    566


Q ss_pred             CCCCCEEECCCcCCC
Q 038320          190 LSSLQYLNLEGVDLS  204 (467)
Q Consensus       190 l~~L~~L~L~~n~~~  204 (467)
                      .+.++.+++.++.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            666666666665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.22  E-value=0.014  Score=51.08  Aligned_cols=59  Identities=20%  Similarity=0.148  Sum_probs=24.5

Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320          368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~  428 (467)
                      ..+..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.++...+.++.+++.+|.+
T Consensus        65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            33444444444433 33333333333444444444443 3344444444444444444443

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=83.97  E-value=5.6  Score=39.10  Aligned_cols=16  Identities=19%  Similarity=0.009  Sum_probs=7.4

Q ss_pred             CCEEECCCcCCCCCCC
Q 038320          193 LQYLNLEGVDLSKAGS  208 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~  208 (467)
                      +.+++++.|...+.++
T Consensus       216 lteldls~n~~Kddip  231 (553)
T KOG4242|consen  216 LTELDLSTNGGKDDIP  231 (553)
T ss_pred             ccccccccCCCCccch
Confidence            4444555544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	467
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-26
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-26
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-05
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		3e-05
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		5e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		5e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		7e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 180/424 (42%), Gaps = 66/424 (15%)
Query: 83  LKLRSPEIPD-SFTDNGTTYQLEGEISPSVLDLK-HLNYLDLSLNNFRGSRIPNFLGSLE 140
           LK+R  ++ D SF       +  GE+  S+ +L   L  LDLS NNF G  +PN   + +
Sbjct: 340 LKMRGLKVLDLSFN------EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 141 K-LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ-YLN- 197
             L+ L L    F G IPP+  N S L  L L+  Y S      +  LS+L  L+ +LN 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXX 257
           LEG           Q    + +L  L L    L    P                      
Sbjct: 454 LEG--------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP----KDLGS 313
           IP+W+  +  LA L LS N+  GNIP    +  SL  LDL+ N L  G IP    K  G 
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGK 564
Query: 314 LCNLW----------------DLDLSGNDLDGEII--EFVDRLSK---CA---------- 342
           +   +                +   +GN L+ + I  E ++RLS    C           
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 343 ------NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
                 N S+  LD+  N L G++P  +G +  L IL L  N   GSIP+ +G+L  L  
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV----HFSKLKNLKELHIAKYS 452
           L L +N +DG IP+++  L+ L  +D+S N   G + E+     F   K L    +  Y 
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Query: 453 LAPR 456
           L PR
Sbjct: 745 L-PR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 37/205 (18%)
Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLCNLWDLDLSGNDLDGEI 331
           LS +++ G++   F    SL  LDLS NSL G       LGS   L  L++S N LD   
Sbjct: 84  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 139
Query: 332 IEFVDRLSKCAN-SSLESLDLGQNNLGG------FLPNSLGQLE---------------- 368
             F  ++S     +SLE LDL  N++ G       L +  G+L+                
Sbjct: 140 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 369 ---NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
              NL+ L +  N F   IP  +G+ S+L+ L +  N + G   +++   + L +L+IS 
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 426 NPWIGLVTEVHFSKLKNLKELHIAK 450
           N ++G +  +    LK+L+ L +A+
Sbjct: 257 NQFVGPIPPL---PLKSLQYLSLAE 278

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 195/486 (40%), Gaps = 116/486 (23%)
Query: 30  QSIARCVQNEKEALLKIKASVTDPSGRLSSWTG-EDCCKWEGVICDNSTGKVVQLKLRSP 88
           QS+ R    E   L+  K  + D +  L  W+  ++ C ++GV C +   KV  + L S 
Sbjct: 5   QSLYR----EIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSK 57
Query: 89  EIPDSFT----------DNGTTYQLEGEISPSVLDLK---HLNYLDLSLNNFRGSRIP-N 134
            +   F+             + +     I+ SV   K    L  LDLS N+  G      
Sbjct: 58  PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 117
Query: 135 FLGSLEKLRYLNLSGAS--FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL--SRL 190
            LGS   L++LN+S  +  F G +      L+SL++LDL+    S   ++ V W+     
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG--ANVVGWVLSDGC 174
Query: 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXX 250
             L++L + G  +S                 ++ +  C   EF                 
Sbjct: 175 GELKHLAISGNKIS----------------GDVDVSRCVNLEF-------------LDVS 205
Query: 251 XXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG------ 304
                  IP +L + S L HLD+S N L G+   A +  T L+ L++S N  +G      
Sbjct: 206 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 264
Query: 305 ---------------GQIPKDLGSLCN-LWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348
                          G+IP  L   C+ L  LDLSGN   G +  F    S   + +L  
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS- 323
Query: 349 LDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPESIGNLS--------------- 392
                NN  G LP ++L ++  LK+L L  N F G +PES+ NLS               
Sbjct: 324 ----SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 393 ------------SLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV--HFS 438
                       +L+ELYL NN   G IP +L   S LV L +S N   G +       S
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 439 KLKNLK 444
           KL++LK
Sbjct: 440 KLRDLK 445

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323
           N   +  LD+S N L G IP    +M  L  L+L  N  I G IP ++G L  L  LDLS
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLS 685
Query: 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378
            N LDG I + +  L+      L  +DL  NNL G +P  +GQ E     +   N
Sbjct: 686 SNKLDGRIPQAMSALTM-----LTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 37/205 (18%)
Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLCNLWDLDLSGNDLDGEI 331
           LS +++ G++   F    SL  LDLS NSL G       LGS   L  L++S N LD   
Sbjct: 81  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 136
Query: 332 IEFVDRLSKCAN-SSLESLDLGQNNLGG------FLPNSLGQLE---------------- 368
             F  ++S     +SLE LDL  N++ G       L +  G+L+                
Sbjct: 137 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 369 ---NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
              NL+ L +  N F   IP  +G+ S+L+ L +  N + G   +++   + L +L+IS 
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 426 NPWIGLVTEVHFSKLKNLKELHIAK 450
           N ++G +  +    LK+L+ L +A+
Sbjct: 254 NQFVGPIPPL---PLKSLQYLSLAE 275

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 159/381 (41%), Gaps = 84/381 (22%)
Query: 35  CVQNEKEALLKIKASVTDPSGRLSSW-TGEDCC--KWEGVICDNSTG--KVVQLKLRSPE 89
           C   +K+ALL+IK  + +P+  LSSW    DCC   W GV+CD  T   +V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 90  IPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDL-SLNNFRGSRIPNFLGSLEKLRYLNLS 148
           +P  +            I  S+ +L +LN+L +  +NN  G  IP  +  L +L YL ++
Sbjct: 62  LPKPY-----------PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYIT 109
Query: 149 GASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGS 208
             + +G IP     + +L  LD   F Y++L       +S L +L  +  +G  +S A  
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLD---FSYNALSGTLPPSISSLPNLVGITFDGNRISGA-- 164
Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKL 268
                                                            IP    + SKL
Sbjct: 165 -------------------------------------------------IPDSYGSFSKL 175
Query: 269 -AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
              + +S N L G IP  FAN+ +L  +DLS N ++ G      GS  N   + L+ N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
             ++ +    LSK    +L  LDL  N + G LP  L QL+ L  L +  N   G IP+ 
Sbjct: 234 AFDLGKV--GLSK----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 388 IGNLSSLR-ELYLHNNLMDGT 407
            GNL       Y +N  + G+
Sbjct: 288 -GNLQRFDVSAYANNKCLCGS 307

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 10/191 (5%)
Query: 267 KLAHLDLSANNLQGN--IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
           ++ +LDLS  NL     IP + AN+  L  L +   + + G IP  +  L  L  L ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
            ++ G I +F+ ++      +L +LD   N L G LP S+  L NL  +   GN   G+I
Sbjct: 111 TNVSGAIPDFLSQIK-----TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 385 PESIGNLSSL-RELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
           P+S G+ S L   + +  N + G IP +   L +L  +D+S N   G  + V F   KN 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS-VLFGSDKNT 223
Query: 444 KELHIAKYSLA 454
           +++H+AK SLA
Sbjct: 224 QKIHLAKNSLA 234

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS 411
           G NNL G +P ++ +L  L  L +      G+IP+ +  + +L  L    N + GT+P S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVF 461
           +  L +LV +   GN   G + + + S  K    + I++  L  ++   F
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 264 NISKLAHLDLSANNLQ--GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
           ++++L  L L  N L+    I +    M SL++LD+S+NS+   +   D     +L  L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
           +S N L        D + +C    ++ LDL  N +   +P  + +LE L+ L +  N  +
Sbjct: 406 MSSNIL-------TDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK 457
Query: 382 GSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
            S+P+ I   L+SL++++LH N  D + P+
Sbjct: 458 -SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDL 320
           L  ++ L +L L+ N LQ      F  +T+L+EL L EN L    +P  +   L NL  L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYL 138
Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
           +L+ N L        D+L+     +L  LDL  N L         +L  LK L+L+ N  
Sbjct: 139 NLAHNQLQSLPKGVFDKLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIP 409
           + S+P+ +   L+SL+ ++LH+N  D T P
Sbjct: 194 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 26/181 (14%)
Query: 270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSL--IGGQIPKDLGSLCNLWDLDLSGNDL 327
            LDL +N L      AF  +T LR L L++N L  +   I K+L +L  LW   ++ N L
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VTDNKL 97
Query: 328 DGEIIEFVDRLSKCAN-------------------SSLESLDLGQNNLGGFLPNSLGQLE 368
               I   D+L   A                    + L  L LG N L         +L 
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 369 NLKILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
           +LK L+L+ N  +  +PE +   L+ L+ L L NN +      +   L  L +L +  NP
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Query: 428 W 428
           W
Sbjct: 217 W 217

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII 332
           L +N L G    AF  +T L +LDLS+N+ +    P     L +L  L L    L  E+ 
Sbjct: 62  LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELG 120
Query: 333 EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE-SIGNL 391
             + R      ++L+ L L  NNL     N+   L NL  L L GN    S+PE +   L
Sbjct: 121 PGLFR----GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVPEHAFRGL 175
Query: 392 SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            SL  L LH N +    P +   L  L+ L +  N    L  EV    L++L+ L +
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV-LVPLRSLQYLRL 231

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 265 ISKLAHLDLSANNLQGNIPDAF--ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322
           + +L  L L  N L+     A    NM+SL  LD+S NSL      +      ++  L+L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 323 SGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG 382
           S N L G +        +C    ++ LDL  N +   +P  +  L+ L+ L +  N  + 
Sbjct: 436 SSNMLTGSVF-------RCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK- 486
Query: 383 SIPESIGN-LSSLRELYLHNNLMDGTIP 409
           S+P+ + + L+SL+ ++LH+N  D T P
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILDL 171
           +L HL  L+LS N   G +   F     +L  L+L+      N P S F NL  LQ+L+L
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAF-KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
               Y  L++ +   L+ L  L++LNL+G        +       + SL  L L +CGL 
Sbjct: 430 T---YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLL 486
Query: 232 EFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
                                       Q   ++ K++H+DLS N+L  +  D+ +++  
Sbjct: 487 SID------------------------QQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKG 522
Query: 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
           +  L+L+ NS I    P+ L  L     ++LS N LD
Sbjct: 523 IY-LNLAANS-INIISPRLLPILSQQSTINLSHNPLD 557

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSG 324
           ++  +LDL  N+L+      F  +TSL +L L  N L    +P  +   L +L  L+LS 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLST 85
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
           N L        D+L++     L+ L L  N L         +L  LK L+L+ N  + S+
Sbjct: 86  NQLQSLPNGVFDKLTQ-----LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SV 139
Query: 385 PESI-GNLSSLRELYLHNNLMDGTIP 409
           P+ +   L+SL+ ++LH+N  D T P
Sbjct: 140 PDGVFDRLTSLQYIWLHDNPWDCTCP 165

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 9/194 (4%)
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
           +P+ +   ++L  LDL  N ++    D FA+   L EL+L+EN ++    P    +L NL
Sbjct: 26  VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNL 82
Query: 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377
             L L  N L    +     L     S+L  LD+ +N +   L      L NLK L++  
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGL-----SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 378 NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHF 437
           N        +   L+SL +L L    +     ++L  L  L+VL +  +  I  + +  F
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-HLNINAIRDYSF 196
Query: 438 SKLKNLKELHIAKY 451
            +L  LK L I+ +
Sbjct: 197 KRLYRLKVLEISHW 210

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322
           L  S +   DLS + +   +   F++ T L +L L++N  I          L +L  L+L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNL 330
Query: 323 SGN---DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
           S N    +D  + E +D+L        E LDL  N++      S   L NLK L L  N 
Sbjct: 331 SQNFLGSIDSRMFENLDKL--------EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 380 FRGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
            + S+P+ I   L+SL++++LH N  D + P+
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILDL 171
           +L+HL YL+LS N   G     F     +L  L+++        P S F NL  L++L+L
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAF-KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
           +   +  L++ +   L+ L  L++LNL+G        S      M+ SL  L L +C L 
Sbjct: 432 S---HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 232 EFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
                                       Q    +  + HLDLS N+L G+  DA +++  
Sbjct: 489 SID------------------------QQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
           L  L+++ N+ I    P  L +L     ++LS N LD
Sbjct: 525 LY-LNMASNN-IRIIPPHLLPALSQQSIINLSHNPLD 559

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 23/143 (16%)
Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWD-LDLSG---NDLDGEII--EFVDRLSKCANS 344
           S+ E D  EN ++   +PKD      LW  LDLS     ++   I   +F+ RL    NS
Sbjct: 202 SIDEDDDIENRMV---MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS 258
Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404
             E            LP  +  L NL++L L  N    S+P  +G+   L+  Y  +N++
Sbjct: 259 LTE------------LPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV 305
Query: 405 DGTIPKSLGKLSHLVVLDISGNP 427
             T+P   G L +L  L + GNP
Sbjct: 306 -TTLPWEFGNLCNLQFLGVEGNP 327

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	467
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (769), Expect = 4e-94
 Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 33/424 (7%)

Query: 31  SIARCVQNEKEALLKIKASVTDPSGRLSSWT-GEDCCKWEGVICDNSTGKVVQLKLRSPE 89
           S ++ +  E   L+  K  + D    L  W+  ++ C ++GV C +   KV  + L S  
Sbjct: 5   SPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKP 61

Query: 90  IPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSG 149
           +   F            +S S+L L  L  L LS ++  GS +  F      L  L+LS 
Sbjct: 62  LNVGF----------SAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSR 109

Query: 150 ASFAGNIPP--SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAG 207
            S +G +    S G+ S L+ L++++          V    +L+SL+ L+L    +S A 
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 208 SSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267
                 ++    L  L +    +     +S     +L FLD+SSN+F++ IP +L + S 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSA 224

Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
           L HLD+S N L G+   A +  T L+ L++S N    G IP     L +L  L L+ N  
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-VGPIPP--LPLKSLQYLSLAENKF 281

Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP-E 386
            GEI +F+         +L  LDL  N+  G +P   G    L+ L L  N F G +P +
Sbjct: 282 TGEIPDFLSGAC----DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 387 SIGNLSSLRELYLHNNLMDGTIPKSLGKLS-HLVVLDISGNPWIGLV-TEVHFSKLKNLK 444
           ++  +  L+ L L  N   G +P+SL  LS  L+ LD+S N + G +   +  +    L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 445 ELHI 448
           EL++
Sbjct: 398 ELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  230 bits (588), Expect = 6e-68
 Identities = 109/359 (30%), Positives = 168/359 (46%), Gaps = 40/359 (11%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
           ++ G++  S     +L +LD+S NNF    IP FLG    L++L++SG   +G+   +  
Sbjct: 189 KISGDVDVS--RCVNLEFLDVSSNNFSTG-IP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 162 NLSSLQILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219
             + L++L++  N F    +          L SLQYL+L     +     ++  +    +
Sbjct: 245 TCTELKLLNISSNQFV-GPIPP------LPLKSLQYLSLAENKFTGEIPDFL--SGACDT 295

Query: 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSANNL 278
           L+ L L     +   P    + S L  L LSSN+F+  +P   LL +  L  LDLS N  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 279 QGNIPDAFANMT-SLRELDLSENSLIGGQIPKDLG--SLCNLWDLDLSGNDLDGEIIEFV 335
            G +P++  N++ SL  LDLS N+  G  I  +L       L +L L  N   G+I   +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 336 DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR 395
                   S L SL L  N L G +P+SLG L  L+ L+LW N+  G IP+ +  + +L 
Sbjct: 415 -----SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGN-------PWIGLVTEVHFSKLKNLKELH 447
            L L  N + G IP  L   ++L  + +S N        WIG        +L+NL  L 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--------RLENLAILK 520

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  226 bits (578), Expect = 2e-66
 Identities = 112/329 (34%), Positives = 148/329 (44%), Gaps = 18/329 (5%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-F 160
           +L G+ S ++     L  L++S N F G  IP     L+ L+YL+L+   F G IP    
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGP-IPPL--PLKSLQYLSLAENKFTGEIPDFLS 290

Query: 161 GNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL 220
           G   +L  LDL     +        +    S L+ L L   + S  G   +     +  L
Sbjct: 291 GACDTLTGLDL---SGNHFYGAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGL 345

Query: 221 SELHLPACGLF-EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK--LAHLDLSANN 277
             L L       E P       +SLL LDLSSN+F+  I   L    K  L  L L  N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
             G IP   +N + L  L LS N L  G IP  LGSL  L DL L  N L+GEI + +  
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-- 462

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397
                  +LE+L L  N+L G +P+ L    NL  + L  N   G IP+ IG L +L  L
Sbjct: 463 ---MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
            L NN   G IP  LG    L+ LD++ N
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  207 bits (528), Expect = 2e-59
 Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 17/326 (5%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
              G+I P++ +   L  L LS N   G+ IP+ LGSL KLR L L      G IP    
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            + +L+ L L+   ++ L  +    LS  ++L +++L    L+     W+     L +L+
Sbjct: 464 YVKTLETLILD---FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---LENLA 517

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
            L L         P  + +  SL++LDL++N FN +IP  +   S      ++AN + G 
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGK 573

Query: 282 IPDAFANMTSLRELDLSENSL-IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340
                 N    +E   + N L   G   + L  L      +++     G      D    
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG- 632

Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
               S+  LD+  N L G++P  +G +  L IL L  N   GSIP+ +G+L  L  L L 
Sbjct: 633 ----SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 401 NNLMDGTIPKSLGKLSHLVVLDISGN 426
           +N +DG IP+++  L+ L  +D+S N
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  187 bits (476), Expect = 3e-52
 Identities = 98/351 (27%), Positives = 137/351 (39%), Gaps = 48/351 (13%)

Query: 102 QLEGEISPSVL-DLKHLNYLDLSLNNFRGSRIPNFLGSL-EKLRYLNLSGASFAGNIPPS 159
              GE+    L  ++ L  LDLS N F G  +P  L +L   L  L+LS  +F+G I P+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 160 FGN--LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
                 ++LQ L L     +         LS  S L  L+L              + N L
Sbjct: 388 LCQNPKNTLQELYL---QNNGFTGKIPPTLSNCSELVSLHL--------------SFNYL 430

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
                      G     P S+ + S L  L L  N     IPQ L+ +  L  L L  N+
Sbjct: 431 ----------SGTI---PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
           L G IP   +N T+L  + LS N L G +IPK +G L NL  L LS N   G I      
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNI-----P 531

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397
                  SL  LDL  N   G +P ++ +        +  N   G     I N    +E 
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKEC 587

Query: 398 YLHNNL--MDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
           +   NL    G   + L +LS     +I+   + G  +   F    ++  L
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFDNNGSMMFL 637

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  174 bits (444), Expect = 9e-48
 Identities = 84/351 (23%), Positives = 132/351 (37%), Gaps = 66/351 (18%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
            L G I  S+  L  L  L L LN   G  IP  L  ++ L  L L      G IP    
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 162 NLSSLQILDL--NTFYYSSLESDDV-EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
           N ++L  + L  N        + ++ +W+ RL +L  L L                N   
Sbjct: 488 NCTNLNWISLSNNRL------TGEIPKWIGRLENLAILKLSN--------------NSF- 526

Query: 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA--------- 269
                           P  + +  SL++LDL++N FN +IP  +   S            
Sbjct: 527 ------------SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

Query: 270 -------------HLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCN 316
                        H   +    QG   +    +++    +++     GG       +  +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY-GGHTSPTFDNNGS 633

Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW 376
           +  LD+S N L G I +    +       L  L+LG N++ G +P+ +G L  L IL L 
Sbjct: 634 MMFLDMSYNMLSGYIPK---EIGSM--PYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
            N   G IP+++  L+ L E+ L NN + G IP+  G+           NP
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
           C +  + S+DL    L                          ++  S+ +L+ L  L+L 
Sbjct: 47  CRDDKVTSIDLSSKPLNVGF---------------------SAVSSSLLSLTGLESLFLS 85

Query: 401 NNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV-TEVHFSKLKNLKELHIAKYSL 453
           N+ ++G++       + L  LD+S N   G V T         LK L+++  +L
Sbjct: 86  NSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (513), Expect = 3e-61
 Identities = 96/400 (24%), Positives = 151/400 (37%), Gaps = 105/400 (26%)

Query: 34  RCVQNEKEALLKIKASVTDPSGRLSSWTGE-DCC--KWEGVICDNSTGKVVQLKLRSPEI 90
            C   +K+ALL+IK  + +P+  LSSW    DCC   W GV+CD  T             
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQ------------ 48

Query: 91  PDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGS-RIPNFLGSLEKLRYLNLSG 149
                                     +N LDLS  N      IP+ L +L  L +L + G
Sbjct: 49  -----------------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 150 A-SFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGS 208
             +  G IPP+   L+                            L YL +   ++S    
Sbjct: 86  INNLVGPIPPAIAKLTQ---------------------------LHYLYITHTNVS---- 114

Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL 268
                               G     P  +    +L+ LD S N  + ++P  + ++  L
Sbjct: 115 --------------------GAI---PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 269 AHLDLSANNLQGNIPDAFANMTSLRE-LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
             +    N + G IPD++ + + L   + +S N L G +IP    +L NL  +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNML 209

Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
           +G+              + + + L +N+L   L   +G  +NL  L L  N   G++P+ 
Sbjct: 210 EGDASVL---FGSD--KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 388 IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
           +  L  L  L +  N + G IP+  G L    V   + N 
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  107 bits (269), Expect = 3e-26
 Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 35/205 (17%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKL-RYLNLSGASFAGNIPPSF 160
            L G + PS+  L +L  +    N   G+ IP+  GS  KL   + +S     G IPP+F
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 161 GNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL 220
            NL+ L  +DL     + LE D         + Q ++L                N L   
Sbjct: 195 ANLN-LAFVDL---SRNMLEGDASVLFGSDKNTQKIHLAK--------------NSL--- 233

Query: 221 SELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG 280
                     F+     V    +L  LDL +N    ++PQ L  +  L  L++S NNL G
Sbjct: 234 ---------AFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 281 NIPDAFANMTSLRELDLSENSLIGG 305
            IP    N+        + N  + G
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCG 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  181 bits (462), Expect = 1e-50
 Identities = 76/349 (21%), Positives = 132/349 (37%), Gaps = 26/349 (7%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
             ++  L+L+ N  R            +L  L++   + +   P     L  L++L+L  
Sbjct: 24  PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ- 81

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
             ++ L     +  +  ++L  L+L    + K  ++         +L  L L   GL   
Sbjct: 82  --HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK---QKNLITLDLSHNGLSST 136

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQGNIPDAFANMTS 291
              + V   +L  L LS+N   +   + L     S L  L+LS+N ++   P  F  +  
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 292 LRELDLSENSLIGGQIPKDLG---SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348
           L  L L+   L G  + + L    +  ++ +L LS + L                ++L  
Sbjct: 197 LFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT---FLGLKWTNLTM 252

Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTI 408
           LDL  NNL     +S   L  L+   L  N  +     S+  L ++R L L  +    +I
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 409 ---------PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
                      S   L  L  L++  N  I  +    F+ L NLK L +
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (460), Expect = 2e-50
 Identities = 86/367 (23%), Positives = 133/367 (36%), Gaps = 29/367 (7%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSG---------ASF 152
            L    + S   L  L Y  L  NN +     + L  L  +RYLNL           AS 
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 153 AGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ 212
                 SF  L  L+ L++     + +        + L +L+YL+L     S    +   
Sbjct: 318 PKIDDFSFQWLKCLEHLNME---DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 213 ATNM-LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAH 270
             ++    L  L+L    + +    +      L  LDL  N+    +       +  +  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIG-GQIPKDLGSLCNLWDLDLSGNDLDG 329
           + LS N       ++FA + SL+ L L   +L      P     L NL  LDLS N++  
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNL--------GGFLPNSLGQLENLKILQLWGNLFR 381
              + ++ L       LE LDL  NNL         G     L  L +L IL L  N F 
Sbjct: 495 INDDMLEGLE-----KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 382 GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441
               E   +L  L+ + L  N ++            L  L++  N    +  +V     +
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 442 NLKELHI 448
           NL EL +
Sbjct: 610 NLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (451), Expect = 4e-49
 Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 25/344 (7%)

Query: 117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYY 176
               D S      +++P+ L     +  LNL+          +F   S L  LD+    +
Sbjct: 6   HEVADCSHLKL--TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG---F 58

Query: 177 SSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPL 236
           +++   + E   +L  L+ LNL+  +LS+             +L+ELHL +  + +    
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDK---TFAFCTNLTELHLMSNSIQKIKNN 115

Query: 237 SVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANM--TSLRE 294
             V   +L+ LDLS N  +S+     + +  L  L LS N +Q    +       +SL++
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354
           L+LS N  I    P    ++  L+ L L+   L   + E      + AN+S+ +L L  +
Sbjct: 176 LELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE--KLCLELANTSIRNLSLSNS 232

Query: 355 NLGGFLPNSLGQLE--NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
            L      +   L+  NL +L L  N       +S   L  L   +L  N +      SL
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 413 GKLSHLVVLDISGNPW--------IGLVTEVHFSKLKNLKELHI 448
             L ++  L++  +          +  + +  F  LK L+ L++
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (442), Expect = 6e-48
 Identities = 83/361 (22%), Positives = 140/361 (38%), Gaps = 19/361 (5%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
           +L      +     +L  L L  N+ +     N     + L  L+LS    +     +  
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            L +LQ L L+     +L+S++++  +  SSL+ L L    + +       A   +  L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFA-NSSLKKLELSSNQIKEFSPGCFHA---IGRLF 198

Query: 222 ELHLPACGLFEFPPLSV---VNFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSAN 276
            L L    L       +   +  +S+  L LS++  +++       L  + L  LDLS N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI----I 332
           NL     D+FA +  L    L  N+ I       L  L N+  L+L  +     I    +
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 333 EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIG--- 389
             +D  S      LE L++  N++ G   N    L NLK L L  +        +     
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 390 -NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
              S L  L L  N +      +   L HL VLD+  N     +T   +  L+N+ E+++
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 449 A 449
           +
Sbjct: 438 S 438

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  162 bits (413), Expect = 6e-44
 Identities = 81/346 (23%), Positives = 118/346 (34%), Gaps = 22/346 (6%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSR--------IPNFLGSLEKLRYLNLSGASFA 153
            ++   S S+  L ++ YL+L  +  + S                L+ L +LN+      
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 154 GNIPPSFGNLSSLQILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWV 211
           G     F  L +L+ L L  +     +L ++    L+  S L  LNL    +SK  S   
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-HSPLHILNLTKNKISKIESDAF 401

Query: 212 QATNMLPSLSELHLPACGL-FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270
                L  L  L L    +  E          ++  + LS N +          +  L  
Sbjct: 402 SW---LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 271 LDLSANNLQG--NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN--- 325
           L L    L+   + P  F  + +L  LDLS N+ I       L  L  L  LDL  N   
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLA 517

Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP 385
            L                S L  L+L  N            L  LKI+ L  N       
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 386 ESIGNLSSLRELYLHNNLMDGTIPKSLGK-LSHLVVLDISGNPWIG 430
               N  SL+ L L  NL+     K  G    +L  LD+  NP+  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (293), Expect = 4e-28
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 102 QLEGEISPSVL-DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG--NIPP 158
           ++  E++      L+++  + LS N +      N    +  L+ L L   +     + P 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
            F  L +L ILDL+    +++ + + + L  L  L+ L+L+               N L 
Sbjct: 475 PFQPLRNLTILDLS---NNNIANINDDMLEGLEKLEILDLQH--------------NNLA 517

Query: 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNL 278
            L +   P       P   +   S L  L+L SN F+    +   ++ +L  +DL  NNL
Sbjct: 518 RLWKHANPG-----GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 279 QGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
                  F N  SL+ L+L +N +   +      +  NL +LD+  N  D   
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (257), Expect = 1e-23
 Identities = 42/207 (20%), Positives = 68/207 (32%), Gaps = 34/207 (16%)

Query: 243 SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302
           S    D S     + +P  L   + +  L+L+ N L+      F   + L  LD+  N+ 
Sbjct: 5   SHEVADCSHLKL-TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT- 60

Query: 303 IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPN 362
           I    P+    L                               L+ L+L  N L      
Sbjct: 61  ISKLEPELCQKL-----------------------------PMLKVLNLQHNELSQLSDK 91

Query: 363 SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD 422
           +     NL  L L  N  +           +L  L L +N +  T   +  +L +L  L 
Sbjct: 92  TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 423 ISGNPWIGLVTEV-HFSKLKNLKELHI 448
           +S N    L +E        +LK+L +
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLEL 178

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 290 TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL 349
            S    D S   L   Q+P DL +  N+  L+L+ N L         R S+     L SL
Sbjct: 4   VSHEVADCSHLKL--TQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQ-----LTSL 54

Query: 350 DLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIP 409
           D+G N +    P    +L  LK+L L  N       ++    ++L EL+L +N +     
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 410 KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
               K  +L+ LD+S N  +         +L+NL+EL ++
Sbjct: 115 NPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLS 153

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 41/189 (21%), Positives = 57/189 (30%), Gaps = 10/189 (5%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRG-SRIPNFLGSLEKLRYLNLSGASFAGNIPPSF 160
           +       S   +  L  L L     +     P+    L  L  L+LS  + A       
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 161 GNLSSLQILDLN-----TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATN 215
             L  L+ILDL        +  +     + +L  LS L  LNLE     +          
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE---VFK 557

Query: 216 MLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDLS 274
            L  L  + L    L   P     N  SL  L+L  N   S   +        L  LD+ 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 275 ANNLQGNIP 283
            N       
Sbjct: 618 FNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL 399
           KC   S E  D     L   +P+ L    N+ +L L  N  R     +    S L  L +
Sbjct: 1   KC-TVSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 400 HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
             N +    P+   KL  L VL++  N  +  +++  F+   NL ELH+ 
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLM 105

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (446), Expect = 1e-48
 Identities = 56/432 (12%), Positives = 137/432 (31%), Gaps = 58/432 (13%)

Query: 54  SGRLSSWT-GEDCCKW---EGVICDNSTGKVVQLKLR----SPEIPDSF----------- 94
           +   ++W   ++   W    GV  +++ G+V  L L     S  +PD+            
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 95  TDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNF-LGSLEKLRYLNLSGASFA 153
             +G            +              +++ + +          L    ++     
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 154 GNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA 213
            +I  S         +   +   + +       + RL+ L+   +              A
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITFVSKA----VMRLTKLRQFYMGNSPFV--------A 220

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
            N+  +    +      ++   L   N   L  +++ +    + +P +L  + ++  +++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 274 SANNL--------QGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
           + N                       ++ + +  N+L    +   L  +  L  L+   N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP 385
            L+G++  F       +   L SL+L  N +     N  G  E ++ L    N  +  IP
Sbjct: 341 QLEGKLPAF------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP 393

Query: 386 E--SIGNLSSLRELYLHNNLMDG-------TIPKSLGKLSHLVVLDISGNPWIGLVTEVH 436
                 ++S +  +    N +          +  +  K  ++  +++S N       E+ 
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL- 452

Query: 437 FSKLKNLKELHI 448
           FS    L  +++
Sbjct: 453 FSTGSPLSSINL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  173 bits (440), Expect = 8e-48
 Identities = 57/364 (15%), Positives = 111/364 (30%), Gaps = 58/364 (15%)

Query: 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGN 162
            + +        + +  + +  NN +   +   L  ++KL  L        G   P+FG+
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGS 351

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222
              L  L+L    Y+ +      +      ++ L+                 N L  +  
Sbjct: 352 EIKLASLNL---AYNQITEIPANFCGFTEQVENLSFAH--------------NKLKYIP- 393

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS-------SIPQWLLNISKLAHLDLSA 275
                            + S +  +D S N+  S        +         ++ ++LS 
Sbjct: 394 -----------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSL------IGGQIPKDLGSLCNLWDLDLSGNDLDG 329
           N +     + F+  + L  ++L  N L            ++  +   L  +DL  N L  
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL------FRGS 383
              +F           L  +DL  N+     P        LK   +              
Sbjct: 503 LSDDF----RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 384 IPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
            PE I    SL +L + +N +   + + +    ++ VLDI  NP I +    +       
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLS-YVCPYIEA 613

Query: 444 KELH 447
               
Sbjct: 614 GMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (296), Expect = 2e-28
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 20/224 (8%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQW-------LLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
           +         ++ +FN  +  W       L +  ++  L L      G +PDA   +T L
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107

Query: 293 RELDLSENSLIGGQ---IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL 349
             L L  +     +    PK + +  +               +   D   +   S L   
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV---DYDPREDFSDLIKD 164

Query: 350 DLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIP 409
            +  +     +  S         +    N     + +++  L+ LR+ Y+ N+       
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 410 KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
               +  +                ++ +  LK+L ++ +     
Sbjct: 224 CEAWENENSEYAQQYKTE------DLKWDNLKDLTDVEVYNCPN 261

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 6e-27
 Identities = 30/270 (11%), Positives = 79/270 (29%), Gaps = 35/270 (12%)

Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL 268
           S         +    +         P +S+ +   +  L L     +  +P  +  +++L
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107

Query: 269 AHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
             L L ++  + N     P   +   S  +            +             DL  
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD----YDPREDFSDLIK 163

Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
           + ++ +  +   + S         +    NN+   +  ++ +L  L+   +  + F    
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 385 P-------------------ESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
                                   NL  L ++ ++N      +P  L  L  + +++++ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 426 NPWIGLVTE-------VHFSKLKNLKELHI 448
           N  I                  + ++ ++I
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 15/207 (7%)

Query: 105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSG-------ASFAGNIP 157
             + P+     +++ ++LS N            +   L  +NL G        +   +  
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATN-- 215
            +F N   L  +DL     + L  D     + L  L  ++L     SK  +  + ++   
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFR--ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK 539

Query: 216 MLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA 275
                ++            P  +    SL  L + SND    + + +     ++ LD+  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKD 596

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSL 302
           N                    L  +  
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 34/178 (19%)

Query: 105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
            + + +  +   L  +DL  N            +L  L  ++LS  SF+   P    N S
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 165 SLQILDLNTFYYSS---LESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
           +L+   +     +       +  E ++   SL  L +                N +  ++
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS--------------NDIRKVN 582

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ 279
           E   P                ++  LD+  N   S    ++    +     L  +  Q
Sbjct: 583 EKITP----------------NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  167 bits (425), Expect = 7e-46
 Identities = 84/371 (22%), Positives = 128/371 (34%), Gaps = 39/371 (10%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGN------IPPS 159
            I P       L+ L L  N    + +   +  L  L    L    F            +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219
              L +L I +    Y      D ++  + L+++   +L  V + +         +    
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-----SYNFG 305

Query: 220 LSELHLPACGLFEFPPL-------------------SVVNFSSLLFLDLSSNDFN--SSI 258
              L L  C   +FP L                   S V+  SL FLDLS N  +     
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 259 PQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW 318
            Q     + L +LDLS N +   +   F  +  L  LD   ++L          SL NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNL-GGFLPNSLGQLENLKILQLWG 377
            LD+S            + LS     SLE L +  N+    FLP+   +L NL  L L  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 378 NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHF 437
                  P +  +LSSL+ L + +N            L+ L VLD S N  +    +   
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 438 SKLKNLKELHI 448
               +L  L++
Sbjct: 540 HFPSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (410), Expect = 7e-44
 Identities = 68/319 (21%), Positives = 116/319 (36%), Gaps = 23/319 (7%)

Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175
            +    L+  ++    I +    L  +   +L   +        F      Q L+L    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCK 315

Query: 176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL--FEF 233
           +    +     L  L  L + + +G +              LPSL  L L   GL     
Sbjct: 316 FGQFPTL---KLKSLKRLTFTSNKGGNAFSEVD--------LPSLEFLDLSRNGLSFKGC 364

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSL 292
              S    +SL +LDLS N    ++    L + +L HLD   +NL+       F ++ +L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
             LD+S               L +L  L ++GN      +   D  ++    +L  LDL 
Sbjct: 424 IYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTEL--RNLTFLDLS 478

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
           Q  L    P +   L +L++L +  N F          L+SL+ L    N +  +  + L
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 413 GKL-SHLVVLDISGNPWIG 430
               S L  L+++ N +  
Sbjct: 539 QHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 6e-40
 Identities = 69/379 (18%), Positives = 126/379 (33%), Gaps = 44/379 (11%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
            L    +  +  LK L  L+++ N  +  ++P +  +L  L +L+LS             
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 162 NLSSLQI----LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
            L  + +    LDL+    + ++        +   L  L L     S   +        L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPG----AFKEIRLHKLTLRNNFDS--LNVMKTCIQGL 224

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSL--------LFLDLSSND-FNSSIPQWLLNISKL 268
             L    L          L   + S+L            L+  D +   I      ++ +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSL------------------IGGQIPKD 310
           +   L +  ++      F+     + L+L                         G     
Sbjct: 285 SSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENL 370
              L +L  LDLS N L  +        S    +SL+ LDL  N +   + ++   LE L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCC---SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 398

Query: 371 KILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429
           + L    +  +     S+  +L +L  L + +             LS L VL ++GN + 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 430 GLVTEVHFSKLKNLKELHI 448
                  F++L+NL  L +
Sbjct: 459 ENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  147 bits (372), Expect = 1e-38
 Identities = 77/342 (22%), Positives = 118/342 (34%), Gaps = 25/342 (7%)

Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175
               LDLS N  R         S  +L+ L+LS          ++ +LS L  L L    
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT--- 84

Query: 176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP- 234
            + ++S  +   S LSSLQ L     +L+   +  +     L +L EL++    +  F  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---LKTLKELNVAHNLIQSFKL 141

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL----AHLDLSANNLQGNIPDAFANMT 290
           P    N ++L  LDLSSN   S     L  + ++      LDLS N +    P AF  + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI-IEFVDR--LSKCANSSLE 347
            L +L L  N      +   +  L  L    L   +   E  +E  D+  L    N ++E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 348 SLDLGQNNL-GGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406
              L   +     + +    L N+    L           S       + L L N     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ 318

Query: 407 TIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
                L  L  L      G              L +L+ L +
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDL 354

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (342), Expect = 1e-34
 Identities = 69/360 (19%), Positives = 123/360 (34%), Gaps = 30/360 (8%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
           +++     +   L HL+ L L+ N  +          L  L+ L     + A       G
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK-AGSSWVQATNMLPSL 220
           +L +L+ L++      S +  +    S L++L++L+L    +     +       M    
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 221 SELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ-WLLNISKLAHLDLSAN--- 276
             L L    +    P +      L  L L +N  + ++ +  +  ++ L    L      
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 277 ---NLQGNIPDAFANMTSLR--ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
              NL+     A   + +L   E  L+        I      L N+    L    ++  +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-V 297

Query: 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNL 391
            +F        N   + L+L     G F    L  L+ L          +G    S  +L
Sbjct: 298 KDFSY------NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-----KGGNAFSEVDL 346

Query: 392 SSLRELYLHNN--LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
            SL  L L  N     G   +S    + L  LD+S N  I + +   F  L+ L+ L   
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQ 404

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (316), Expect = 4e-31
 Identities = 56/268 (20%), Positives = 98/268 (36%), Gaps = 14/268 (5%)

Query: 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLS 250
            S + L+L    L   GS    +    P L  L L  C +      +  + S L  L L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 251 SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD 310
            N   S        +S L  L     NL         ++ +L+EL+++ N +   ++P+ 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENL 370
             +L NL  LDLS N +       +  L +       SLDL  N +    P +  ++  L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 371 KILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNL------MDGTIPKSLGKLSHLVV--L 421
             L L  N    ++ +  I  L+ L    L          ++     +L  L +L +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 422 DISGNPWIGLVTEVHFSKLKNLKELHIA 449
            ++   +        F+ L N+    + 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 2e-21
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 14/222 (6%)

Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
           +S + L L+ L +LD   +N +     +   SL  L YL++S           F  LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 167 QILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
           ++L +  N+F  + L     +  + L +L +L+L    L +   +     N L SL  L+
Sbjct: 448 EVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLN 500

Query: 225 LPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI-SKLAHLDLSANNLQGNIP 283
           +     F          +SL  LD S N   +S  Q L +  S LA L+L+ N+      
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

Query: 284 DA--FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323
                  +   R+L +    +     P D   +  +  L+++
Sbjct: 561 HQSFLQWIKDQRQLLVEVERME-CATPSDKQGM-PVLSLNIT 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (420), Expect = 2e-44
 Identities = 57/355 (16%), Positives = 108/355 (30%), Gaps = 45/355 (12%)

Query: 101 YQLEGEISPSVLDLKHLNYLDLSLNNFRG--------SRIPNFLGSLEKLRYLNLSGASF 152
                ++   + DL  L  L+++ N            +R+ +   +  K++   +   + 
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 153 AGNIPPS--FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSW 210
               P S     +  L +LD     ++ +    +E       L  L L+   + +     
Sbjct: 561 EE-FPASASLQKMVKLGLLDCV---HNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPED- 613

Query: 211 VQATNMLPSLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNSSIPQWL-----LN 264
                    +  L      L   P   +  +   +  +D S N   S             
Sbjct: 614 --FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL------IGGQIPKDLGSLCNLW 318
               + + LS N +Q    + FA  + +  + LS N +             +  +   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378
            +DL  N L        D         L ++D+  N      P        LK   +   
Sbjct: 732 TIDLRFNKL----TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786

Query: 379 LFR------GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
                       P  I    SL +L + +N +   + + L     L +LDI+ NP
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  164 bits (416), Expect = 5e-44
 Identities = 57/423 (13%), Positives = 118/423 (27%), Gaps = 46/423 (10%)

Query: 45  KIKASVTDPSGRLSSW-TGEDCCKWEGVICD--NSTGKVVQLKLRSPEIPDSFTDNGTTY 101
           +  +   + +    +W   ++   W        ++ G+V  L L               +
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG-------------F 333

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
             +G +  ++  L  L  L    ++   S        L                      
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
               L + DL     +              SL+   +   +L+   +   +A   L  L 
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG--NLTNRITFISKAIQRLTKLQ 451

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
            ++                       +        +      N+  L  ++L        
Sbjct: 452 IIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 282 IPDAFANMTSLRELDLSENSLIG--------GQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
           +PD   ++  L+ L+++ N  I          ++  D  +   +    +  N+L+    E
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----E 562

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIG-NLS 392
           F    S      L  LD   N +      + G    L  L+L  N     IPE       
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619

Query: 393 SLRELYLHNNLMDGTIPK--SLGKLSHLVVLDISGNP----WIGLVTEVHFSKLKNLKEL 446
            +  L   +N +   IP   +   +  +  +D S N        +   +   K  N   +
Sbjct: 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 447 HIA 449
            ++
Sbjct: 679 TLS 681

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (404), Expect = 2e-42
 Identities = 67/360 (18%), Positives = 110/360 (30%), Gaps = 30/360 (8%)

Query: 105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
             IS ++  L  L  +  + + F                  N   A    N   S+ NL 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM------LP 218
            L  ++L   Y     +   ++L  L  LQ LN+       A       T +       P
Sbjct: 492 DLTDVEL---YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 219 SLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
            +   ++    L EFP   S+     L  LD   N     +        KL  L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA-FGTNVKLTDLKLDYNQ 606

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
           ++    D  A    +  L  S N L       +  S+  +  +D S N +  E       
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-------GSIPESIGN 390
           +      +  ++ L  N +  F          +  + L  NL              +  N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 391 LSSLRELYLHNNLMDGTIPKSL--GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
              L  + L  N +  ++        L +L  +D+S N +    T+        LK   I
Sbjct: 727 TYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ--PLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (371), Expect = 5e-38
 Identities = 51/345 (14%), Positives = 102/345 (29%), Gaps = 36/345 (10%)

Query: 105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
             ++        +    +  NN         L  + KL  L+            +FG   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNV 595

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
            L  L L+   Y+ +E    ++ +    ++ L      L     +   A + +  +  + 
Sbjct: 596 KLTDLKLD---YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKS-VYVMGSVD 650

Query: 225 LPACGLFEFPP-----LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ 279
                +          +      +   + LS N+      +     S ++ + LS N + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 280 -------GNIPDAFANMTSLRELDLSENSLIGGQIPKDL--GSLCNLWDLDLSGNDLDGE 330
                        + N   L  +DL  N L    +  D    +L  L ++D+S N     
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFS-- 766

Query: 331 IIEFVDRLSKCAN----SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE 386
              F  +    +           D   N +    P  +    +L  LQ+  N  R  + E
Sbjct: 767 --SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 387 SIGNLSSLRELYL-HNNLMDGTIPKSLGKL-SHLVVLDISGNPWI 429
            +     L  L +  N  +   +      + + + VL       I
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (412), Expect = 4e-44
 Identities = 80/352 (22%), Positives = 135/352 (38%), Gaps = 13/352 (3%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLR--YLNLSGASFAGNIPPS 159
            +     P     + L  LD   N          + SL++     LNL+G      I P 
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGNDI-AGIEPG 197

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219
             + +  Q L+        +    ++  S + SL     E +D      +  +    + S
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLK-NSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255

Query: 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ 279
           +  ++L     F     +   FS L  LDL++    S +P  L+ +S L  L LSAN  +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFE 314

Query: 280 GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339
                + +N  SL  L +  N+         L +L NL +LDLS +D++         L 
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC---CNLQ 371

Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELY 398
               S L+SL+L  N        +  +   L++L L     +    +S   NL  L+ L 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISGN--PWIGLVTEVHFSKLKNLKELHI 448
           L ++L+D +  +    L  L  L++ GN  P   +        L  L+ L +
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (406), Expect = 3e-43
 Identities = 59/338 (17%), Positives = 109/338 (32%), Gaps = 13/338 (3%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
                 L+ S N             L  L +L+L+          +F +   L  L L  
Sbjct: 32  PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT- 89

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              + L       LS   +L++L      +S      +       +L  L+L +  +   
Sbjct: 90  --ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN---QKTLESLYLGSNHISSI 144

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ-GNIPDAFANMTSL 292
                     L  LD  +N  +    + + ++ +  +L L+ N      I     +    
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 293 RELDLSENSLIGGQIPKDLGS-LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351
           + L+      +         S + +LW       D +                S+ES++L
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS---PAVFEGLCEMSVESINL 261

Query: 352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS 411
            ++       N+      L+ L L        +P  +  LS+L++L L  N  +     S
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
                 L  L I GN     +       L+NL+EL ++
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (395), Expect = 9e-42
 Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 14/316 (4%)

Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175
            +  ++L  + F      N       L+ L+L+    +  +P     LS+L+ L L+   
Sbjct: 255 SVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS--- 309

Query: 176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL--FEF 233
            +  E+      S   SL +L+++G                L +L EL L    +   + 
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKR--LELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD-AFANMTSL 292
             L + N S L  L+LS N+  S   +      +L  LDL+   L+       F N+  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
           + L+LS +  +     +    L  L  L+L GN      I+  + L       LE L L 
Sbjct: 428 KVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL--GRLEILVLS 484

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
             +L     ++   L+ +  + L  N    S  E++ +L  +  L L +N +   +P  L
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLL 543

Query: 413 GKLSHLVVLDISGNPW 428
             LS    +++  NP 
Sbjct: 544 PILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (382), Expect = 5e-40
 Identities = 81/344 (23%), Positives = 130/344 (37%), Gaps = 21/344 (6%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLE-KLRYLNLSGASFAGNIPPSFGNLSSLQILD 170
             ++ L        +        F G  E  +  +NL    F      +F   S LQ LD
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
           L   + S L S     L  LS+L+ L L              + +  PSL+ L +     
Sbjct: 285 LTATHLSELPSG----LVGLSTLKKLVLSANKFENLCQI---SASNFPSLTHLSIKGNTK 337

Query: 231 -FEFPPLSVVNFSSLLFLDLSSNDFNSS--IPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
             E     + N  +L  LDLS +D  +S      L N+S L  L+LS N       +AF 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347
               L  LDL+   L          +L  L  L+LS + LD    +  D L      +L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-----ALQ 452

Query: 348 SLDLGQNNLGGF---LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404
            L+L  N+         NSL  L  L+IL L           +  +L  +  + L +N +
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 405 DGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
             +  ++L  L  +  L+++ N  I ++       L   + +++
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  141 bits (357), Expect = 1e-36
 Identities = 67/355 (18%), Positives = 121/355 (34%), Gaps = 21/355 (5%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
           Q+      +      L+ L L+ N          L   + L++L       +        
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
           N  +L+ L L     + + S  +        L+ L+ +   +       + +     +L 
Sbjct: 127 NQKTLESLYLG---SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL- 182

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQ 279
            L+L    +    P    + +    L+         I + L    I  L        + +
Sbjct: 183 SLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 280 GNIPDAFANM--TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
              P  F  +   S+  ++L ++                L +LDL+       + E    
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH----LSELPSG 296

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI-PESIGNLSSLRE 396
           L     S+L+ L L  N        S     +L  L + GN  R  +    + NL +LRE
Sbjct: 297 LVGL--STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 397 LYLHNNLMD--GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           L L ++ ++        L  LSHL  L++S N  + L TE  F +   L+ L +A
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLA 408

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 4e-25
 Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 14/234 (5%)

Query: 102 QLEGEISPSVL-DLKHLNYLDLSLNNFRGSRIPNF-LGSLEKLRYLNLSGASFAGNIPPS 159
               E+    L +L++L  LDLS ++   S   N  L +L  L+ LNLS          +
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVE-WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
           F     L++LDL    ++ L+  D +     L  L+ LNL    L     S  Q  + LP
Sbjct: 396 FKECPQLELLDLA---FTRLKVKDAQSPFQNLHLLKVLNLSHSLLD---ISSEQLFDGLP 449

Query: 219 SLSELHLPACGLFEFPPLSVVNF---SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA 275
           +L  L+L      +       +      L  L LS  D +S       ++  + H+DLS 
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329
           N L  +  +A +++  +  L+L+ N  I   +P  L  L     ++L  N LD 
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNH-ISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 5e-18
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 10/161 (6%)

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
           +  +     L   +IP  L +  +   L+ S N L         RL       L  LDL 
Sbjct: 15  KTYNCENLGL--NEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLIN-----LTFLDLT 65

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
           +  +     ++      L  L L  N        ++    +L+ L+     +       L
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125

Query: 413 GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
                L  L +  N  I  +        + LK L     ++
Sbjct: 126 HNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAI 165

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (364), Expect = 2e-39
 Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 28/322 (8%)

Query: 135 FLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194
                     L   G++                  D N ++ +          +  ++ Q
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-------QANSNNPQ 59

Query: 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF 254
                G  L         AT   P    L L +  L +FP       S L  + + +   
Sbjct: 60  IETRTGRALKATADLLEDAT--QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL 116

Query: 255 NSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG--------GQ 306
              +P  +   + L  L L+ N L+  +P + A++  LREL +     +           
Sbjct: 117 -MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ 366
              +   L NL  L L        I      ++     +L+SL +  + L   L  ++  
Sbjct: 175 ASGEHQGLVNLQSLRLEWT----GIRSLPASIANL--QNLKSLKIRNSPLSA-LGPAIHH 227

Query: 367 LENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
           L  L+ L L G     + P   G  + L+ L L +     T+P  + +L+ L  LD+ G 
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 427 PWIGLVTEVHFSKLKNLKELHI 448
             +  +     ++L     + +
Sbjct: 288 VNLSRLPS-LIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (349), Expect = 3e-37
 Identities = 56/323 (17%), Positives = 111/323 (34%), Gaps = 32/323 (9%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
                 L    +        + L   ++    +        N   S    ++     + T
Sbjct: 11  SSGRENLYFQGST-ALRPYHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQIET 62

Query: 174 FYYSSLESD-DVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
               +L++  D+   +       L L  V L +      +    L  L  + + A GL E
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR----LSHLQHMTIDAAGLME 118

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN---- 288
            P  ++  F+ L  L L+ N    ++P  + ++++L  L + A      +P+  A+    
Sbjct: 119 LPD-TMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 289 -----MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343
                + +L+ L L    +    +P  + +L NL  L +  +     +      +     
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNS----PLSALGPAIHHL-- 228

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
             LE LDL         P   G    LK L L       ++P  I  L+ L +L L   +
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 404 MDGTIPKSLGKLSHLVVLDISGN 426
               +P  + +L    ++ +  +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (323), Expect = 1e-33
 Identities = 55/300 (18%), Positives = 99/300 (33%), Gaps = 22/300 (7%)

Query: 154 GNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA 213
           G+      + S  + L       ++L       LS+       +      +   ++    
Sbjct: 2   GSSHHHHHHSSGRENLYFQG--STALRPYHDV-LSQWQRHYNADRNRWHSAWRQAN---- 54

Query: 214 TNMLPSLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD 272
                +          L      L        + L+L S       P     +S L H+ 
Sbjct: 55  ---SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMT 110

Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN----DLD 328
           + A  L   +PD       L  L L+ N L    +P  + SL  L +L +       +L 
Sbjct: 111 IDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELP 167

Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI 388
             +             +L+SL L    +   LP S+  L+NLK L++  +    ++  +I
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 389 GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            +L  L EL L         P   G  + L  L +     +  +      +L  L++L +
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL 284

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 2e-33
 Identities = 55/330 (16%), Positives = 103/330 (31%), Gaps = 53/330 (16%)

Query: 88  PEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRG-SRIPNFLGSL--EKLRY 144
               D  +     Y  +     S     + N   +     R      + L          
Sbjct: 26  RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 145 LNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLS 204
           L L         P     LS LQ + ++      L     + + + + L+ L L      
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELP----DTMQQFAGLETLTLAR---- 136

Query: 205 KAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN 264
                     N L +L              P S+ + + L  L + +    + +P+ L +
Sbjct: 137 ----------NPLRAL--------------PASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 265 IS---------KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC 315
                       L  L L    ++ ++P + AN+ +L+ L +  + L    +   +  L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLP 229

Query: 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL 375
            L +LDL G              +      L+ L L   +    LP  + +L  L+ L L
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRA-----PLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 376 WGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
            G +    +P  I  L +   + +  +L  
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 2e-25
 Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 21/262 (8%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDL 171
                   L+L        + P+    L  L+++ +  A     +P +    + L+ L L
Sbjct: 78  ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKA------GSSWVQATNMLPSLSELHL 225
                + L +     ++ L+ L+ L++               +        L +L  L L
Sbjct: 135 A---RNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
              G+   P  S+ N  +L  L + ++   S++   + ++ KL  LDL       N P  
Sbjct: 191 EWTGIRSLPA-SIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
           F     L+ L L + S +   +P D+  L  L  LDL G      +   + +L      +
Sbjct: 249 FGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-----A 302

Query: 346 LESLDLGQNNLGGFLPNSLGQL 367
              + +  +       +     
Sbjct: 303 NCIILVPPHLQAQLDQHRPVAR 324

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (375), Expect = 5e-39
 Identities = 65/327 (19%), Positives = 106/327 (32%), Gaps = 24/327 (7%)

Query: 107 ISPSVLD-LKHLNYLDLSLNNFRGSRI-PNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
             PS+++ L  +   +  L               L  +  ++L+G S             
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHF 307

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
             Q L +         + D      L  L+ L L     S +          LPSLS L 
Sbjct: 308 KWQSLSIIRCQLKQFPTLD------LPFLKSLTLTMNKGSISFKKVA-----LPSLSYLD 356

Query: 225 LPACGLFEFPPLSVVNF--SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
           L    L      S  +   +SL  LDLS N     +    + + +L HLD   + L+   
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 283 P-DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
              AF ++  L  LD+S  +            L +L  L ++GN      +  V      
Sbjct: 416 EFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--- 471

Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401
             ++L  LDL +  L          L  L++L +  N            L SL  L    
Sbjct: 472 -TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPW 428
           N ++ +          L   +++ N  
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (355), Expect = 2e-36
 Identities = 73/341 (21%), Positives = 118/341 (34%), Gaps = 24/341 (7%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNT 173
           +    LD+SLN      I +      KL  L L G   + NI      NL+ L +  L  
Sbjct: 181 QVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQAT--NMLPSLSELHLPACGLF 231
             +    + ++   S +  L  + ++   L+            + L ++S + L    + 
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 232 EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
               +          L +            L     L  L L+ N    +I      + S
Sbjct: 299 YLEDV--PKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKG--SISFKKVALPS 351

Query: 292 LRELDLSENSL--IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL 349
           L  LDLS N+L   G     DLG+  +L  LDLS N        F           L+ L
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANF------MGLEELQHL 404

Query: 350 DLGQNNLGGFLPNS-LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL-HNNLMDGT 407
           D   + L      S    LE L  L +     +         L+SL  L +  N+  D T
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 408 IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           +       ++L  LD+S    +  ++   F  L  L+ L++
Sbjct: 465 LSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNM 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (352), Expect = 6e-36
 Identities = 64/379 (16%), Positives = 116/379 (30%), Gaps = 45/379 (11%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
           +L    S  +  L  L  L+++ N     ++P +  +L  L +++LS             
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 162 NLS----SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
            L         LD++      ++        +   L  L L G   S            L
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQ----AFQGIKLHELTLRGNFNSSNIMK--TCLQNL 228

Query: 218 PSLSELHLPACGLFEFPPLSVVNFS--------SLLFLDLSSNDFNSSIPQWLLNISKLA 269
             L    L      +   L +   S        ++    L+  +  S        ++ ++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 270 HLDLSANNLQGNIPDAF-------------------ANMTSLRELDLSENSLIGGQIPKD 310
            + L+  +++                           ++  L+ L L+ N      I   
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG---SISFK 345

Query: 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENL 370
             +L +L  LDLS N L          L     +SL  LDL  N     +  +   LE L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLG---TNSLRHLDLSFNGAII-MSANFMGLEEL 401

Query: 371 KILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429
           + L    +  +     S   +L  L  L +               L+ L  L ++GN + 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 430 GLVTEVHFSKLKNLKELHI 448
                  F+   NL  L +
Sbjct: 462 DNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 3e-31
 Identities = 67/381 (17%), Positives = 116/381 (30%), Gaps = 50/381 (13%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
           ++E     +   L HL+ L L+ N  +    P     L  L  L       A       G
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK-AGSSWVQATNMLPSL 220
            L +L+ L++   +  S +       S L++L +++L    +     +            
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 221 SELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDLSANNLQ 279
             L +    +      +      L  L L  N  +S+I +  L N++ L    L     +
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 280 GNI------PDAFANMTSLRELDLSENSL-IGGQIPKDLGSLCNLWDLDLSGNDLDGEII 332
                    P     +  +   +                  L N+  + L+G       I
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-----I 297

Query: 333 EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLS 392
           ++++ + K      +SL + +  L  F    L     LK L L  N  +GSI      L 
Sbjct: 298 KYLEDVPKH--FKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMN--KGSISFKKVALP 350

Query: 393 SLRELYLHNNLMDG-------------------------TIPKSLGKLSHLVVLDISGNP 427
           SL  L L  N +                            +  +   L  L  LD   + 
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410

Query: 428 WIGLVTEVHFSKLKNLKELHI 448
              +     F  L+ L  L I
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (310), Expect = 2e-30
 Identities = 68/354 (19%), Positives = 112/354 (31%), Gaps = 46/354 (12%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
            L+   S S  +   L +LDLS               L  L  L L+G       P SF 
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            L+SL+ L       + L S +   + +L +L+ LN+                N + S  
Sbjct: 102 GLTSLENLVAV---ETKLASLESFPIGQLITLKKLNVAH--------------NFIHSCK 144

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA----HLDLSANN 277
                        P    N ++L+ +DLS N   +     L  + +       LD+S N 
Sbjct: 145 ------------LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI-IEFVD 336
           +      AF  +  L EL L  N      +   L +L  L    L   +   E  +E  +
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 337 R--LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSL 394
              +    + +++   L   N           L N+  + L G        E +      
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKW 309

Query: 395 RELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           + L +    +          L  L  L ++ N             L +L  L +
Sbjct: 310 QSLSIIRCQLKQFPTLD---LPFLKSLTLTMNK---GSISFKKVALPSLSYLDL 357

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (307), Expect = 5e-30
 Identities = 67/320 (20%), Positives = 116/320 (36%), Gaps = 24/320 (7%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
             V        L +        + P     L  L+ L L+     G+I      L SL  
Sbjct: 301 EDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTM--NKGSISFKKVALPSLSY 354

Query: 169 LDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226
           LDL  N   +S             +SL++L+L         ++++     L  L  L   
Sbjct: 355 LDLSRNALSFSG---CCSYSDLGTNSLRHLDLSFNGAIIMSANFMG----LEELQHLDFQ 407

Query: 227 ACGLFEFPPLSV-VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-D 284
              L      S  ++   LL+LD+S  +         L ++ L  L ++ N+ + N   +
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344
            FAN T+L  LDLS+   +         +L  L  L++S N+L        ++L      
Sbjct: 468 VFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY----- 521

Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404
           SL +LD   N +           ++L    L  N     I E    L  ++E       +
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQKQFLVNV 580

Query: 405 DGTIPKSLGKLSHLVVLDIS 424
           +     +  +++  +VLD +
Sbjct: 581 EQMTCATPVEMNTSLVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (289), Expect = 1e-27
 Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 12/218 (5%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            SS   +DLS N           N S+L  LDLS   ++     A+  +  L  L L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF- 359
            +     P     L +L +L      L       + +L      +L+ L++  N +    
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----TLKKLNVAHNFIHSCK 144

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR----ELYLHNNLMDGTIPKSLGKL 415
           LP     L NL  + L  N  +      +  L         L +  N +   I     + 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQG 203

Query: 416 SHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
             L  L + GN     + +     L  L    +     
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (283), Expect = 7e-27
 Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 15/267 (5%)

Query: 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLS 250
           SS + ++L    L         + +    L  L L  C +      +      L  L L+
Sbjct: 32  SSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 251 SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD 310
            N   S  P     ++ L +L      L          + +L++L+++ N +   ++P  
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENL 370
             +L NL  +DLS N +    +  +  L +       SLD+  N +      +   +  L
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLREN-PQVNLSLDMSLNPIDFIQDQAFQGI-KL 206

Query: 371 KILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNLMDGTI------PKSLGKLSHLVV--L 421
             L L GN    +I +  + NL+ L    L               P  +  L  + +   
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 422 DISGNPWIGLVTEVHFSKLKNLKELHI 448
            ++            F  L N+  + +
Sbjct: 267 RLTYTNDFSDDIVK-FHCLANVSAMSL 292

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 30/156 (19%)

Query: 102 QLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG 161
             + +     L L  LN L ++ N+F+ + + N   +   L +L+LS           F 
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            L  LQ+L+++   +++L   D    ++L SL  L+                 N + +  
Sbjct: 495 TLHRLQLLNMS---HNNLLFLDSSHYNQLYSLSTLDCSF--------------NRIETS- 536

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSS 257
                         +      SL F +L++N     
Sbjct: 537 ------------KGILQHFPKSLAFFNLTNNSVACI 560

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (342), Expect = 5e-36
 Identities = 78/353 (22%), Positives = 136/353 (38%), Gaps = 49/353 (13%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
           DL       L   +            LE +  L ++G   A         L++L+ L+LN
Sbjct: 20  DLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLN 74

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
               + +       LS L  L  L +    ++      + A   L +L EL+L    + +
Sbjct: 75  GNQITDISP-----LSNLVKLTNLYIGTNKITD-----ISALQNLTNLRELYLNEDNISD 124

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
             PL+  N + +  L+L +N  N S    L N++ L +L ++ + ++   P   AN+T L
Sbjct: 125 ISPLA--NLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK------------ 340
             L L+ N +        L SL +L       N +    I  V  +++            
Sbjct: 180 YSLSLNYNQIED---ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKIT 234

Query: 341 -----CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR 395
                   S L  L++G N +     N++  L  LK+L +  N    S    + NLS L 
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLN 290

Query: 396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L+L+NN +     + +G L++L  L +S N    +      + L  +     
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH---ITDIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 4e-33
 Identities = 76/319 (23%), Positives = 125/319 (39%), Gaps = 34/319 (10%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
             +  L +L YL+L+ N        + L +L KL  L +           +  NL++L+ 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
           L LN    S +       L+ L+ +  LNL          S +   + +  L+ L +   
Sbjct: 115 LYLNEDNISDISP-----LANLTKMYSLNLGANHNL----SDLSPLSNMTGLNYLTVTES 165

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN 288
            + +  P++  N + L  L L+ N      P  L +++ L +     N +    P   AN
Sbjct: 166 KVKDVTPIA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VAN 219

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348
           MT L  L +  N +        L +L  L  L++  N +    I  V  L+K     L+ 
Sbjct: 220 MTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISD--INAVKDLTK-----LKM 269

Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTI 408
           L++G N +     + L  L  L  L L  N       E IG L++L  L+L  N +    
Sbjct: 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 409 PKSLGKLSHLVVLDISGNP 427
           P  L  LS +   D +   
Sbjct: 328 P--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (293), Expect = 3e-29
 Identities = 64/288 (22%), Positives = 108/288 (37%), Gaps = 34/288 (11%)

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
           +L+      L           DV     L S+  L + G  ++      +Q    L +L 
Sbjct: 20  DLAEGIRAVLQ-----KASVTDVVTQEELESITKLVVAGEKVAS-----IQGIEYLTNLE 69

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
            L+L    + +  PLS  N   L  L + +N    +    L N++ L  L L+ +N+   
Sbjct: 70  YLNLNGNQITDISPLS--NLVKLTNLYIGTN--KITDISALQNLTNLRELYLNEDNISD- 124

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
                AN+T +  L+L  N  +       L ++  L  L ++ + +    +  +  L+  
Sbjct: 125 -ISPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKD--VTPIANLT-- 177

Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401
               L SL L  N +    P  L  L +L     + N      P  + N++ L  L + N
Sbjct: 178 ---DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           N +    P  L  LS L  L+I  N    +        L  LK L++ 
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTN---QISDINAVKDLTKLKMLNVG 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.5 bits (249), Expect = 3e-23
 Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 24/231 (10%)

Query: 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ 279
            + L      + +  P +  + +  +   L        +      +  +  L ++   + 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 280 GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339
                    +T+L  L+L+ N +        L +L  L +L +  N +    I  +  L+
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKI--TDISALQNLT 110

Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL 399
                +L  L L ++N+    P  L  L  +  L L  N    S    + N++ L  L +
Sbjct: 111 -----NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTV 162

Query: 400 HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAK 450
             + +    P  +  L+ L  L ++ N    +      + L +L       
Sbjct: 163 TESKVKDVTP--IANLTDLYSLSLNYNQ---IEDISPLASLTSLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 3e-21
 Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 40/265 (15%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
            ++ +L +L  L L+ +N   S I   L +L K+  LNL       ++ P   N++ L  
Sbjct: 104 SALQNLTNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
           L +     +  +  DV  ++ L+ L  L+L    +       +     L SL        
Sbjct: 160 LTV-----TESKVKDVTPIANLTDLYSLSLNYNQIED-----ISPLASLTSLHYFTAYVN 209

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN 288
            + +  P++  N + L  L + +N      P  L N+S+L  L++  N +     +A  +
Sbjct: 210 QITDITPVA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKD 263

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK-------- 340
           +T L+ L++  N +        L +L  L  L L+ N L  E +E +  L+         
Sbjct: 264 LTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 341 ---------CANSSLESLDLGQNNL 356
                     + S ++S D     +
Sbjct: 321 NHITDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
           L  L+Y    +N    + I   + ++ +L  L +              NLS L  L++ T
Sbjct: 198 LTSLHYFTAYVNQI--TDITP-VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGT 252

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              S + +     +  L+ L+ LN+    +S      +   N L  L+ L L    L   
Sbjct: 253 NQISDINA-----VKDLTKLKMLNVGSNQISD-----ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ 279
               +   ++L  L LS N      P  L ++SK+   D +   ++
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
            +V DL  L  L++  N    S I     +L +L  L L+            G L++L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQI--SDISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK 205
           L L+  + + +       L+ LS +   +     + K
Sbjct: 316 LFLSQNHITDIRP-----LASLSKMDSADFANQVIKK 347

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (345), Expect = 4e-35
 Identities = 79/351 (22%), Positives = 124/351 (35%), Gaps = 39/351 (11%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNI------PPS 159
            I P       L+ L L  N    + +   +  L  L    L    F            +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219
              L +L I +    Y      D ++  + L+++   +L  V + +     V+  +    
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFG 305

Query: 220 LSELHLPACGLFEFPPLSVVNF-------------------SSLLFLDLSSNDFN--SSI 258
              L L  C   +FP L + +                     SL FLDLS N  +     
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 259 PQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW 318
            Q     + L +LDLS N +   +   F  +  L  LD   ++L          SL NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNL-GGFLPNSLGQLENLKILQLWG 377
            LD+S            + LS     SLE L +  N+    FLP+   +L NL  L L  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 378 NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
                  P +  +LSSL+ L + +N +         +L+ L  + +  NPW
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (326), Expect = 1e-32
 Identities = 78/338 (23%), Positives = 120/338 (35%), Gaps = 23/338 (6%)

Query: 117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTFY 175
              LDLSLN    + I        +L  L L     + N+       L+ L++  L    
Sbjct: 179 NLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 176 YSS---LESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
           + +   LE  D   L  L +L         L       +   N L ++S   L +  +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
               S         L+L +  F    P   L    L  L  ++N        +  ++ SL
Sbjct: 297 VKDFS--YNFGWQHLELVNCKFGQ-FPTLKLK--SLKRLTFTSNKGGNAF--SEVDLPSL 349

Query: 293 RELDLSENSL-IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351
             LDLS N L   G   +      +L  LDLS N +      F           LE LD 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF------LGLEQLEHLDF 403

Query: 352 GQNNLGGFLPNS-LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL-HNNLMDGTIP 409
             +NL      S    L NL  L +     R +       LSSL  L +  N+  +  +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 410 KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
               +L +L  LD+S    +  ++   F+ L +L+ L+
Sbjct: 464 DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (282), Expect = 7e-27
 Identities = 68/363 (18%), Positives = 123/363 (33%), Gaps = 44/363 (12%)

Query: 107 ISPSVLD-LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSS 165
           +    +  LK L  L+++ N  +  ++P +  +L  L +L+LS              L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 166 LQI----LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM---LP 218
           + +    LDL+    + ++           + + + L  + L     S          L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPG---------AFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 219 SLSELHLPACGLFEFPPLSVVNFS--------SLLFLDLSSND-FNSSIPQWLLNISKLA 269
            L    L          L   + S        ++    L+  D +   I      ++ ++
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329
              L +  ++     ++      + L+L        Q P     L +L  L  + N   G
Sbjct: 286 SFSLVSVTIERVKDFSY--NFGWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKG-G 338

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLG--GFLPNSLGQLENLKILQLWGNLFRGSIPES 387
                VD        SLE LDL +N L   G    S     +LK L L  N    ++  +
Sbjct: 339 NAFSEVD------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 388 IGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
              L  L  L   ++ +      S    L +L+ LDIS          + F+ L +L+ L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVL 450

Query: 447 HIA 449
            +A
Sbjct: 451 KMA 453

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (265), Expect = 1e-24
 Identities = 76/374 (20%), Positives = 124/374 (33%), Gaps = 41/374 (10%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
            +          L  LDLS    + +       SL  L  L L+G         +F  LS
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
           SLQ L       ++L S +   +  L +L+ LN+    +        +  + L +L  L 
Sbjct: 101 SLQKLVA---VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLD 155

Query: 225 LPACGLFEFPPLSVVNFSSL----LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG 280
           L +  +       +     +    L LDLS N   + I        +L  L L  N    
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 281 NIPD-AFANMTSLRELDLSENSLIGG----QIPKD-LGSLCNLWDLDLSGNDLDGEIIEF 334
           N+       +  L    L            +  K  L  LCNL   +     LD  + + 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 335 VDRLSKCANSSLESLDLGQNNLGGFLPNS-LGQLENLKILQLWGNLFRGSIPESI----- 388
           +D  +   N  + S  L    +      S     ++L+++      F     +S+     
Sbjct: 275 IDLFNCLTN--VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 389 -----------GNLSSLRELYLHNNLMD--GTIPKSLGKLSHLVVLDISGNPWIGLVTEV 435
                       +L SL  L L  N +   G   +S    + L  LD+S N  I + +  
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391

Query: 436 HFSKLKNLKELHIA 449
            F  L+ L+ L   
Sbjct: 392 -FLGLEQLEHLDFQ 404

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (260), Expect = 5e-24
 Identities = 78/341 (22%), Positives = 120/341 (35%), Gaps = 25/341 (7%)

Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175
               LDLS N  R         S  +L+ L+LS          ++ +LS L  L L    
Sbjct: 29  STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT--- 84

Query: 176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP- 234
            + ++S  +   S LSSLQ L     +L+   +  +     L +L EL++    +  F  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---LKTLKELNVAHNLIQSFKL 141

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL----AHLDLSANNLQGNIPDAFANMT 290
           P    N ++L  LDLSSN   S     L  + ++      LDLS N +    P AF  + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI-IEFVDR--LSKCANSSLE 347
            L +L L  N      +   +  L  L    L   +   E  +E  D+  L    N ++E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 348 SLDLGQNNLGGF-LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406
              L   +     + +    L N+    L           S       + L L N     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ 318

Query: 407 TIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
                  KL  L  L  + N      +      L +L+ L 
Sbjct: 319 F---PTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLD 353

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 13/247 (5%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
            P L  L L  C +      +  + S L  L L+ N   S        +S L  L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336
           NL         ++ +L+EL+++ N +   ++P+   +L NL  LDLS N +       + 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE-SIGNLSSLR 395
            L +       SLDL  N +    P +  ++  L  L L  N    ++ +  I  L+ L 
Sbjct: 171 VLHQ-MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 396 ELYL-------HNNL--MDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
              L         NL   D +  + L  L+ +    ++   +        F+ L N+   
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 447 HIAKYSL 453
            +   ++
Sbjct: 288 SLVSVTI 294

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 8/181 (4%)

Query: 105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FGNL 163
           G  S S      L YLDLS N      + +    LE+L +L+   ++       S F +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 164 SSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223
            +L  LD++   ++          + LSSL+ L + G    +     +     L +L+ L
Sbjct: 421 RNLIYLDIS---HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFL 475

Query: 224 HLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP 283
            L  C L +  P +  + SSL  L+++SN   S        ++ L  + L  N    + P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 284 D 284
            
Sbjct: 536 R 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  137 bits (347), Expect = 7e-35
 Identities = 78/358 (21%), Positives = 125/358 (34%), Gaps = 32/358 (8%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNF-LGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILD 170
            L     L LS N      +       LE+L+ L L        I   +F NL +L+ILD
Sbjct: 22  VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
           L     S +     +    L  L  L L    LS A          L +L+ L L    +
Sbjct: 80  LG---SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQI 135

Query: 231 FEFPPLSV-VNFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQGNIPDAFA 287
                       +SL  +D SSN         L  L    L+   L+AN+L   +   + 
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 288 NM------TSLRELDLSENSL-----------IGGQIPKDLGSLCNLWDLDLSGNDLDGE 330
                     L  LD+S N             I       L    ++       +++  +
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI--K 253

Query: 331 IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN 390
             +  +  +  A SS+  LDL    +          L++LK+L L  N       E+   
Sbjct: 254 DPD-QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 391 LSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           L +L+ L L  NL+      +   L  +  +D+  N  I ++ +  F  L+ L+ L +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (329), Expect = 1e-32
 Identities = 75/386 (19%), Positives = 141/386 (36%), Gaps = 55/386 (14%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRI-PNFLGSLEKLRYLNLSGASFAG-NIPPSFGN 162
            + P     L HL  L L       + +   +  +L+ L  L+LS        + PSFG 
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDL-SKAGSSWVQATNMLP--S 219
           L+SL+ +D ++     +   ++E L   + L + +L    L S+    W +  N      
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 220 LSELHLPACGLFEFPP------------LSVVNFSSLLFLDLSSNDFNSSIPQWL--LNI 265
           L  L +   G                   S++    ++      ++           L  
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSG 324
           S + HLDLS   +       F  +  L+ L+L+ N +   +I  +    L NL  L+LS 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNLSY 323

Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
           N L       +   +      +  +DL +N++      +   LE L+ L L  N      
Sbjct: 324 NLLG-----ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 385 PESIGNLSSLRELYL---------------------HNNLMDGTIPKSLGKLSHLVVLDI 423
             +I  + S+ +++L                      N L +  I   L ++ HL +L +
Sbjct: 375 -TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 424 SGNPWIGLVTEVHFSKLKNLKELHIA 449
           + N +     +   S+  +L++L + 
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLG 459

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (319), Expect = 3e-31
 Identities = 68/319 (21%), Positives = 107/319 (33%), Gaps = 22/319 (6%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDL 171
           L    + +LDLS              +L+ L+ LNL+          +F  L +LQ+L+L
Sbjct: 263 LARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
               Y+ L          L  + Y++L+   ++            L  L  L L    L 
Sbjct: 322 ---SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ---TFKFLEKLQTLDLRDNALT 375

Query: 232 EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAF-ANMT 290
                      S+  + LS N   +     L        + LS N L+      F   + 
Sbjct: 376 TIH-----FIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVP 426

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
            L+ L L++N        +      +L  L L  N L       +        S L+ L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           L  N L    P     L  L+ L L  N     +  +    ++L  L +  N +    P 
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPD 544

Query: 411 SLGKLSHLVVLDISGNPWI 429
               LS    LDI+ N +I
Sbjct: 545 VFVSLSV---LDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 9e-31
 Identities = 73/373 (19%), Positives = 137/373 (36%), Gaps = 49/373 (13%)

Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEK-----LRYLNLSGASFAGNIPPSFGN-- 162
             L  K L++  L+ N+       ++   +       L  L++SG  +  +I  +F N  
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 163 ----------LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ 212
                        +             + +    L+R SS+++L+L    +    S   +
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFE 287

Query: 213 ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD 272
               L  L  L+L    + +    +     +L  L+LS N            + K+A++D
Sbjct: 288 T---LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN------- 325
           L  N++       F  +  L+ LDL +N+L        +  + ++ D+ LSGN       
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPK 398

Query: 326 --------DLDGEIIEFVDRLSKCAN-SSLESLDLGQNNLGGFLPNSL-GQLENLKILQL 375
                    L    +E +D L        L+ L L QN       +    +  +L+ L L
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 376 WGNLFRGSIPESI-----GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430
             N+ + +    +       LS L+ LYL++N ++   P     L+ L  L ++ N    
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 431 LVTEVHFSKLKNL 443
           L      + L+ L
Sbjct: 519 LSHNDLPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (309), Expect = 5e-30
 Identities = 74/378 (19%), Positives = 124/378 (32%), Gaps = 38/378 (10%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGASFAGNIPPSFGNLS 164
            + PS   L  L  +D S N               + L + +L+  S    +   +G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 165 ------SLQILDLNTFYYSSLESD---------DVEWLSRLSSLQYLNLEGVDLSKAGSS 209
                  L+ILD++   ++   +              L     +        ++     +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 210 WVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA 269
              A     S+  L L    +F            L  L+L+ N  N    +    +  L 
Sbjct: 259 -TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDL- 327
            L+LS N L       F  +  +  +DL +N +    I       L  L  LDL  N L 
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 328 DGEIIEFVDRLSKCANS---------SLESLDLGQNNLGGFLPNS-LGQLENLKILQLWG 377
               I  +  +    N          +   + L +N L        L ++ +L+IL L  
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 378 NLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSL-----GKLSHLVVLDISGNPWIGL 431
           N F     +       SL +L+L  N++       L       LSHL VL ++ N  +  
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNS 494

Query: 432 VTEVHFSKLKNLKELHIA 449
           +    FS L  L+ L + 
Sbjct: 495 LPPGVFSHLTALRGLSLN 512

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 9e-30
 Identities = 76/345 (22%), Positives = 127/345 (36%), Gaps = 28/345 (8%)

Query: 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGASFAGNIPPSFG 161
           +    + S++   H+       +N +      F G +   +R+L+LS           F 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            L  L++L+L     + +  +       L +LQ LNL    L +  SS       LP ++
Sbjct: 288 TLKDLKVLNLAYNKINKIADE---AFYGLDNLQVLNLSYNLLGELYSSNFYG---LPKVA 341

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
            + L    +      +      L  LDL  N   +     +  I  +  + LS N L   
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTL 396

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
                    +   + LSEN L    I   L  + +L  L L+ N       +        
Sbjct: 397 PKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--- 449

Query: 342 ANSSLESLDLGQNNL-----GGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
            N SLE L LG+N L          +    L +L++L L  N      P    +L++LR 
Sbjct: 450 -NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441
           L L++N +   +  +    ++L +LDIS N  +       F  L 
Sbjct: 509 LSLNSNRL-TVLSHND-LPANLEILDISRNQ-LLAPNPDVFVSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (274), Expect = 1e-25
 Identities = 63/309 (20%), Positives = 116/309 (37%), Gaps = 27/309 (8%)

Query: 160 FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219
              L++ + L L+  Y  ++ +        L  LQ L L             +A   LP+
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASS---FPFLEQLQLLELGSQYTPLTIDK--EAFRNLPN 74

Query: 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSI--PQWLLNISKLAHLDLSANN 277
           L  L L +  ++   P +      L  L L     + ++    +  N+  L  LDLS N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 278 LQG-NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL--CNLWDLDLSGNDLDGEI-IE 333
           ++   +  +F  + SL+ +D S N +       +L  L    L    L+ N L   + ++
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPN------------SLGQLENLKILQLWGNLFR 381
           +   ++   N  LE LD+  N     +              SL    ++       +  +
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 382 GSIPESIGNL--SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSK 439
                +   L  SS+R L L +  +     +    L  L VL+++ N  I  + +  F  
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYG 312

Query: 440 LKNLKELHI 448
           L NL+ L++
Sbjct: 313 LDNLQVLNL 321

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 3e-21
 Identities = 52/246 (21%), Positives = 90/246 (36%), Gaps = 20/246 (8%)

Query: 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAF 286
           C L + P       ++   L LS N   +        + +L  L+L +      I  +AF
Sbjct: 14  CNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 287 ANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
            N+ +LR LDL  + +    +  D    L +L++L L    L   +++           +
Sbjct: 70  RNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLK---DGYFRNLKA 124

Query: 346 LESLDLGQNNLGGF-LPNSLGQLENLKILQLWGNLFRGSIPESIGNLS--SLRELYLHNN 402
           L  LDL +N +    L  S G+L +LK +    N         +  L   +L    L  N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 403 LMDGTIPKSLGKLS------HLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456
            +   +    GK         L +LD+SGN W   +T    + +   +   +        
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 457 LTLVFN 462
               F+
Sbjct: 245 AGFGFH 250

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 17/202 (8%)

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDG 329
                 NL   +P     + +   L LS N +    +       L  L  L+L       
Sbjct: 9   AFYRFCNLT-QVPQ---VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI--PES 387
            I    D+ +     +L  LDLG + +    P++   L +L  L+L+      ++     
Sbjct: 63  TI----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 388 IGNLSSLRELYL-HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL--KNLK 444
             NL +L  L L  N +    +  S GKL+ L  +D S N  I LV E     L  K L 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLS 177

Query: 445 ELHIAKYSLAPRLTLVFNVSPE 466
              +A  SL  R+++ +     
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMN 199

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 42/166 (25%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
             R       +L   Q+P+ L        L LS N      I  V   S      L+ L+
Sbjct: 5   DGRIAFYRFCNLT--QVPQVLN---TTERLLLSFNY-----IRTVTASSFPFLEQLQLLE 54

Query: 351 LGQNNLGGFL-PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL-HNNLMDGTI 408
           LG       +   +   L NL+IL L  +      P++   L  L EL L    L D  +
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 409 -PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
                  L  L  LD+S N    L     F KL +LK +  +   +
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 26/204 (12%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-----F 160
           +I   +L + HL  L L+ N F              L  L L                 F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 161 GNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL 220
             LS LQ+L LN   ++ L S      S L++L+ L+L    L     + +   ++  +L
Sbjct: 477 EGLSHLQVLYLN---HNYLNSLPPGVFSHLTALRGLSLNSNRL-----TVLSHNDLPANL 528

Query: 221 SELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSANNLQ 279
             L +    L    P     F SL  LD++ N F         +N           N+  
Sbjct: 529 EILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECELSTFIN---------WLNHTN 576

Query: 280 GNIPDAFANMTSLRELDLSENSLI 303
             I    A++  +     S  SL 
Sbjct: 577 VTIAGPPADIYCVYPDSFSGVSLF 600

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (335), Expect = 1e-34
 Identities = 66/344 (19%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 108 SPSVLDLKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSS 165
               + L +   +    +     ++P   L S  ++  LNL+       I   +F    +
Sbjct: 38  GFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHT 94

Query: 166 LQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
           +Q L +    ++++          +  L  L LE  DLS          +  P L+ L +
Sbjct: 95  IQKLYMG---FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLSM 148

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
               L      +    +SL  L LSSN   + +   L+    L H ++S N L       
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLI--PSLFHANVSYNLLS-----T 200

Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
            A   ++ ELD S NS+    +   +     L  L L  N+L  +    ++         
Sbjct: 201 LAIPIAVEELDASHNSI--NVVRGPV--NVELTILKLQHNNLT-DTAWLLN------YPG 249

Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
           L  +DL  N L   + +   +++ L+ L +  N    ++      + +L+ L L +N + 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
             + ++  +   L  L +  N     +  +  S    LK L ++
Sbjct: 309 -HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLS 347

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 1e-26
 Identities = 70/330 (21%), Positives = 119/330 (36%), Gaps = 30/330 (9%)

Query: 132 IPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191
           I + L        +++   +           L++ +I+       S++       L    
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFK---NSTMRKLPAALLDSFR 69

Query: 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSS 251
            ++ LNL  + + +  +    A     ++ +L++    +   PP    N   L  L L  
Sbjct: 70  QVELLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 252 NDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311
           ND +S       N  KL  L +S NNL+    D F   TSL+ L LS N L    +   L
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL--THVD--L 182

Query: 312 GSLCNLWDLDLSGNDL----DGEIIEFVD-------RLSKCANSSLESLDLGQNNLGGFL 360
             + +L+  ++S N L        +E +D        +    N  L  L L  NNL    
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-- 240

Query: 361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV 420
              L     L  + L  N     +      +  L  LY+ NN +   +      +  L V
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 421 LDISGNPWIGLVTEVH--FSKLKNLKELHI 448
           LD+S N     +  V     +   L+ L++
Sbjct: 300 LDLSHN----HLLHVERNQPQFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (252), Expect = 2e-23
 Identities = 67/318 (21%), Positives = 106/318 (33%), Gaps = 61/318 (19%)

Query: 113 DLKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILD 170
           ++  L  L L  N+   S +P     +  KL  L++S  +    I    F   +SLQ L 
Sbjct: 115 NVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 171

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
           L+    + L   D   LS + SL + N+    LS              ++ EL      +
Sbjct: 172 LS---SNRLTHVD---LSLIPSLFHANVSYNLLSTLAI--------PIAVEELDASHNSI 217

Query: 231 FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
                        L  L L  N+       WLLN   L  +DLS N L+  +   F  M 
Sbjct: 218 NVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
            L  L +S N L    +      +  L  LDLS N L                       
Sbjct: 273 RLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL---------------------- 308

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
                    +  +  Q + L+ L L  N    ++   +    +L+ L L +N  D    +
Sbjct: 309 --------HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLR 357

Query: 411 SLGKLSHLVVLDISGNPW 428
           +L    ++    +     
Sbjct: 358 AL--FRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.9 bits (239), Expect = 8e-22
 Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 22/244 (9%)

Query: 208 SSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NIS 266
                         ++H+       +     +  ++   +   ++     +P  LL +  
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFR 69

Query: 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGN 325
           ++  L+L+   ++     AFA   ++++L +  N++    +P     ++  L  L L  N
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERN 127

Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP 385
           D     +  + R        L +L +  NNL     ++     +L+ LQL  N     + 
Sbjct: 128 D-----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 181

Query: 386 ESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKE 445
             +  + SL    +  NL+      +L     +  LD S N     +  V       L  
Sbjct: 182 --LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS----INVVRGPVNVELTI 230

Query: 446 LHIA 449
           L + 
Sbjct: 231 LKLQ 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (338), Expect = 1e-34
 Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 17/316 (5%)

Query: 116 HLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNT 173
               LDL  N      +  +   S   L  L L+    +  + P +F NL +L+ L L  
Sbjct: 33  ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR- 88

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              + L+   +   + LS+L  L++    +        Q    L +L  L +    L   
Sbjct: 89  --SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD---LYNLKSLEVGDNDLVYI 143

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
              +    +SL  L L   +  S   + L ++  L  L L   N+      +F  +  L+
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353
            L++S    +   +  +     NL  L ++  +     +  V  L+      L  L+L  
Sbjct: 204 VLEISHWPYLD-TMTPNCLYGLNLTSLSITHCN-----LTAVPYLAVRHLVYLRFLNLSY 257

Query: 354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG 413
           N +     + L +L  L+ +QL G       P +   L+ LR L +  N +         
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 414 KLSHLVVLDISGNPWI 429
            + +L  L +  NP  
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 2e-33
 Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 17/310 (5%)

Query: 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGV 201
            R L+L            F +   L+ L+LN    + + + +    + L +L+ L L   
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELN---ENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 202 DLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQW 261
            L             L +L++L +    +         +  +L  L++  ND      + 
Sbjct: 91  RLKLIPL---GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDL 320
              ++ L  L L   NL     +A +++  L  L L   ++    I       L  L  L
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVL 205

Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
           ++S        ++ +         +L SL +   NL      ++  L  L+ L L  N  
Sbjct: 206 EISHW----PYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSK 439
             +I  S+   L  L+E+ L    +    P +   L++L VL++SGN  +  + E  F  
Sbjct: 261 S-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHS 318

Query: 440 LKNLKELHIA 449
           + NL+ L + 
Sbjct: 319 VGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (295), Expect = 8e-29
 Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 20/280 (7%)

Query: 106 EISPSVL-DLKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPP-SFGN 162
            + P    +L +L  L L  N      IP      L  L  L++S       +    F +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQD 126

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222
           L +L+ L++     + L        S L+SL+ L LE  +L+   +  +     L  L  
Sbjct: 127 LYNLKSLEVG---DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH---LHGLIV 180

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
           L L    +      S      L  L++S   +  ++    L    L  L ++  NL    
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 283 PDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
             A  ++  LR L+LS N +    I    L  L  L ++ L G       +  V+  +  
Sbjct: 241 YLAVRHLVYLRFLNLSYNPI--STIEGSMLHELLRLQEIQLVGGQ-----LAVVEPYAFR 293

Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
             + L  L++  N L     +    + NL+ L L  N   
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (324), Expect = 2e-32
 Identities = 66/344 (19%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 108 SPSVLDLKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSS 165
               + L +   +    +     ++P   L S  ++  LNL+       I   +F    +
Sbjct: 44  GFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHT 100

Query: 166 LQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
           +Q L +    ++++          +  L  L LE  DLS          +  P L+ L +
Sbjct: 101 IQKLYMG---FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLSM 154

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
               L      +    +SL  L LSSN   + +   L+    L H ++S N L       
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLI--PSLFHANVSYNLLS-----T 206

Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
            A   ++ ELD S NS+    +   +     L  L L  N+L  +    ++         
Sbjct: 207 LAIPIAVEELDASHNSI--NVVRGPV--NVELTILKLQHNNLT-DTAWLLN------YPG 255

Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
           L  +DL  N L   + +   +++ L+ L +  N    ++      + +L+ L L +N + 
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
             + ++  +   L  L +  N     +  +  S    LK L ++
Sbjct: 315 -HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLS 353

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (270), Expect = 3e-25
 Identities = 70/328 (21%), Positives = 121/328 (36%), Gaps = 26/328 (7%)

Query: 132 IPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191
           I + L        +++   +           L++ +I+       S++       L    
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFK---NSTMRKLPAALLDSFR 75

Query: 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSS 251
            ++ LNL  + + +  +    A     ++ +L++    +   PP    N   L  L L  
Sbjct: 76  QVELLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 252 NDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311
           ND +S       N  KL  L +S NNL+    D F   TSL+ L LS N L    +   L
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL--THVD--L 188

Query: 312 GSLCNLWDLDLSGNDL----DGEIIEFVD-------RLSKCANSSLESLDLGQNNLGGFL 360
             + +L+  ++S N L        +E +D        +    N  L  L L  NNL    
Sbjct: 189 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-- 246

Query: 361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV 420
              L     L  + L  N     +      +  L  LY+ NN +   +      +  L V
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKV 305

Query: 421 LDISGNPWIGLVTEVHFSKLKNLKELHI 448
           LD+S N  + +  E +  +   L+ L++
Sbjct: 306 LDLSHNHLLHV--ERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 1e-21
 Identities = 65/292 (22%), Positives = 99/292 (33%), Gaps = 59/292 (20%)

Query: 113 DLKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILD 170
           ++  L  L L  N+   S +P     +  KL  L++S  +    I    F   +SLQ L 
Sbjct: 121 NVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 177

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
           L+    + L   D   LS + SL + N+    LS              ++ EL      +
Sbjct: 178 LS---SNRLTHVD---LSLIPSLFHANVSYNLLSTLAI--------PIAVEELDASHNSI 223

Query: 231 FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
                        L  L L  N+       WLLN   L  +DLS N L+  +   F  M 
Sbjct: 224 NVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
            L  L +S N L    +      +  L  LDLS N L                       
Sbjct: 279 RLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL---------------------- 314

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
                    +  +  Q + L+ L L  N    ++   +    +L+ L L +N
Sbjct: 315 --------HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.8 bits (238), Expect = 3e-21
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 22/266 (8%)

Query: 185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSL 244
              S L          +D+      +      L +   +      + + P   + +F  +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG 304
             L+L+                 +  L +  N ++   P  F N+  L  L L  N L  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-- 135

Query: 305 GQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS 363
             +P+ +  +   L  L +S N+     +E ++  +  A +SL++L L  N L       
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNN-----LERIEDDTFQATTSLQNLQLSSNRLTHV---D 187

Query: 364 LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDI 423
           L  + +L    +  NL       ++    ++ EL   +N ++  +   +     L +L +
Sbjct: 188 LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKL 239

Query: 424 SGNPWIGLVTEVHFSKLKNLKELHIA 449
             N    L           L E+ ++
Sbjct: 240 QHNN---LTDTAWLLNYPGLVEVDLS 262

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.3 bits (229), Expect = 3e-20
 Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 22/244 (9%)

Query: 208 SSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NIS 266
                         ++H+       +     +  ++   +   ++     +P  LL +  
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFR 75

Query: 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGN 325
           ++  L+L+   ++     AFA   ++++L +  N++    +P     ++  L  L L  N
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERN 133

Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP 385
           D     +  + R        L +L +  NNL     ++     +L+ LQL  N     + 
Sbjct: 134 D-----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 187

Query: 386 ESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKE 445
             +  + SL    +  NL+      +L     +  LD S N     +  V       L  
Sbjct: 188 --LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS----INVVRGPVNVELTI 236

Query: 446 LHIA 449
           L + 
Sbjct: 237 LKLQ 240

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (316), Expect = 1e-31
 Identities = 76/351 (21%), Positives = 141/351 (40%), Gaps = 51/351 (14%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
           L +L  ++ S N      I   L +L KL  + ++    A        NL++L  L L  
Sbjct: 67  LNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGS----------------SWVQATNML 217
              + ++      L  L++L  L L    +S   +                + ++    L
Sbjct: 122 NQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
            +L  L + +  + +   L+    ++L  L  ++N  +   P  L  ++ L  L L+ N 
Sbjct: 177 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
           L+       A++T+L +LDL+ N +        L  L  L +L L  N +    I  +  
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISN--ISPLAG 285

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397
           L+      L +L+L +N L    P  +  L+NL  L L+ N      P  + +L+ L+ L
Sbjct: 286 LTA-----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           + +NN +  +   SL  L+++  L    N    L      + L  + +L +
Sbjct: 337 FFYNNKV--SDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGL 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (305), Expect = 3e-30
 Identities = 81/340 (23%), Positives = 131/340 (38%), Gaps = 41/340 (12%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
            S  DL  +  L          +  + +  L  L  +N S      +I P   NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVD 94

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
           + +     + +   D+  L+ L++L  L L    ++      +     L +L+ L L + 
Sbjct: 95  ILM---NNNQIA--DITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSN 144

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN 288
            + +   LS    +SL  L    N      P  L N++ L  LD+S+N +        A 
Sbjct: 145 TISDISALS--GLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 197

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348
           +T+L  L  + N +        LG L NL +L L+GN L    I  +  L+      L  
Sbjct: 198 LTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD--IGTLASLTN-----LTD 247

Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTI 408
           LDL  N +    P  L  L  L  L+L  N      P  +  L++L  L L+ N ++   
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303

Query: 409 PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           P  +  L +L  L +  N    +      S L  L+ L  
Sbjct: 304 P--ISNLKNLTYLTLYFNN---ISDISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 8e-29
 Identities = 78/335 (23%), Positives = 123/335 (36%), Gaps = 41/335 (12%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
           L       L   N            L+++  L                 L++L  ++ + 
Sbjct: 23  LAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFS- 76

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              + L   D+  L  L+ L  + +    ++      +     L +L+ L L    + + 
Sbjct: 77  --NNQLT--DITPLKNLTKLVDILMNNNQIAD-----ITPLANLTNLTGLTLFNNQITDI 127

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
            PL   N ++L  L+LSSN  +      L  ++ L  L    N +    P   AN+T+L 
Sbjct: 128 DPLK--NLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLE 180

Query: 294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353
            LD+S N +        L  L NL  L  + N +    I  +  L+      L+ L L  
Sbjct: 181 RLDISSNKV---SDISVLAKLTNLESLIATNNQISD--ITPLGILTN-----LDELSLNG 230

Query: 354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG 413
           N L      +L  L NL  L L  N      P  +  L+ L EL L  N +    P  L 
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284

Query: 414 KLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L+ L  L+++ N    L      S LKNL  L +
Sbjct: 285 GLTALTNLELNENQ---LEDISPISNLKNLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (287), Expect = 1e-27
 Identities = 75/333 (22%), Positives = 132/333 (39%), Gaps = 52/333 (15%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNI--PPSFGNLSSLQILD 170
           +L +LN L+LS N        + L  L  L+ L+         +       NL++L+ LD
Sbjct: 132 NLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGN-----QVTDLKPLANLTTLERLD 183

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
           +++   S +       L++L++L+ L      +S      +    +L +L EL L    L
Sbjct: 184 ISSNKVSDISV-----LAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQL 233

Query: 231 FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
            +   L+  + ++L  LDL++N  ++  P  L  ++KL  L L AN +    P   A +T
Sbjct: 234 KDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK---------- 340
           +L  L+L+EN L        + +L NL  L L  N++    I  V  L+K          
Sbjct: 288 ALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNK 342

Query: 341 -------CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
                     +++  L  G N +    P  L  L  +  L L    +  +      N+S 
Sbjct: 343 VSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
              +      +    P ++         DI+ N
Sbjct: 401 PNTVKNVTGAL--IAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  109 bits (275), Expect = 3e-26
 Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 36/292 (12%)

Query: 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
            +   L+      L     +   S      + L  +  L  + + +       +     L
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKS-----IDGVEYL 67

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
            +L++++     L +  PL   N + L+ + +++N      P  L N++ L  L L  N 
Sbjct: 68  NNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
           +     D   N+T+L  L+LS N++        L  L +L  L       D + +     
Sbjct: 124 ITD--IDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDLKPLA---- 174

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397
                 ++LE LD+  N +     + L +L NL+ L    N      P  +G L++L EL
Sbjct: 175 ----NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
            L+ N +      +L  L++L  LD++ N    L      S L  L EL + 
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLG 273

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 22/220 (10%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
            ++  L +L  LDL+ N    S +   L  L KL  L L     +         L++L  
Sbjct: 237 GTLASLTNLTDLDLANNQI--SNLAP-LSGLTKLTELKLGANQISN--ISPLAGLTALTN 291

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
           L+LN      +       +S L +L YL L   ++S      +   + L  L  L     
Sbjct: 292 LELNENQLEDISP-----ISNLKNLTYLTLYFNNISD-----ISPVSSLTKLQRLFFYNN 341

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN 288
            + +   L+  N +++ +L    N  +   P  L N++++  L L+         +  AN
Sbjct: 342 KVSDVSSLA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
           ++    +     +LI    P  +    +  + D++ N   
Sbjct: 398 VSIPNTVKNVTGALI---APATISDGGSYTEPDITWNLPS 434

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (305), Expect = 3e-31
 Identities = 53/335 (15%), Positives = 103/335 (30%), Gaps = 49/335 (14%)

Query: 132 IPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191
           I     +  + +   ++ +S    +     +  +++ LDL     + L       L+  +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL---SGNPLSQISAADLAPFT 58

Query: 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSS 251
            L+ LNL    L +           L +L  L L    + E          S+  L  ++
Sbjct: 59  KLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAAN 108

Query: 252 NDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311
           N+ +              ++ L+ N +           + ++ LDL  N +      +  
Sbjct: 109 NNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 312 GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK 371
            S   L  L+L  N      I  V        + L++LDL  N L               
Sbjct: 166 ASSDTLEHLNLQYNF-----IYDVKGQVVF--AKLKTLDLSSNKLA-------------- 204

Query: 372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431
                       +     + + +  + L NN +   I K+L    +L   D+ GN +   
Sbjct: 205 -----------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 432 VTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPE 466
                FSK + ++ +                  P 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (300), Expect = 2e-30
 Identities = 54/340 (15%), Positives = 113/340 (33%), Gaps = 32/340 (9%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDL 171
            +        ++ ++ + + + +   S   ++ L+LSG   +          + L++L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
           ++             L  LS+L+ L+L    + +            PS+  LH     + 
Sbjct: 66  SSNVLYETLD-----LESLSTLRTLDLNNNYVQELLV--------GPSIETLHAANNNIS 112

Query: 232 EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG-NIPDAFANMT 290
                          + L++N             S++ +LDL  N +   N  +  A+  
Sbjct: 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
           +L  L+L  N +    +   +     L  LDLS N L   +            + +  + 
Sbjct: 170 TLEHLNLQYNFIY--DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSA-----AGVTWIS 220

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNNLMDGTIP 409
           L  N L   +  +L   +NL+   L GN F  G++ +       ++ +          + 
Sbjct: 221 LRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLT 276

Query: 410 KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
               +   +  L   G      +      +L  L   H  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLC 315
           +I +   N ++     ++ ++L+  +     +  +++ELDLS N L   QI    L    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFT 58

Query: 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL 375
            L  L+LS N L  E ++          S+L +LDL  N +       L    +++ L  
Sbjct: 59  KLELLNLSSNVLY-ETLDLES------LSTLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 376 WGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV 435
             N     +  S       + +YL NN +        G  S +  LD+  N    +    
Sbjct: 107 ANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 436 HFSKLKNLKELHIAK 450
             +    L+ L++  
Sbjct: 164 LAASSDTLEHLNLQY 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 22/143 (15%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
              +    L  LDLS N    + +     S   + +++L        I  +     +L+ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 169 LDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226
            DL  N F+  +L     ++ S+   +Q +               Q    L   +E    
Sbjct: 242 FDLRGNGFHCGTLR----DFFSKNQRVQTVAK-------------QTVKKLTGQNEEECT 284

Query: 227 ACGLFEFPPLSVVNFSSLLFLDL 249
              L  +      +  +     L
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRL 307

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  124 bits (312), Expect = 9e-31
 Identities = 60/329 (18%), Positives = 116/329 (35%), Gaps = 26/329 (7%)

Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG--NIPPSFGNLSSLQ 167
             L+L+  N      +      + + +      R   L+  SF     +      LS ++
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPM-KKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM--LPSLSELHL 225
             D            + + +S L  ++ + +  + + +    +  +T    L  +  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQW---LLNISKLAHLDLSANNLQ--G 280
               +F  P     +  SL FLDLS N       +          L  L LS N+L+   
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 281 NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340
              +    + +L  LD+S N+     +P        +  L+LS   +          +  
Sbjct: 378 KTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIR--------VVKT 427

Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
           C   +LE LD+  NNL  F       L  L+ L +  N  + ++P++      L  + + 
Sbjct: 428 CIPQTLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKIS 481

Query: 401 NNLMDGTIPKSLGKLSHLVVLDISGNPWI 429
            N +         +L+ L  + +  NPW 
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (311), Expect = 1e-30
 Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 26/345 (7%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
            L  LN L++   + R +     L S+  + +L L  +  A  +      LSS++ L+L 
Sbjct: 146 GLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLS-KAGSSWVQATNMLPSLSELHLPACGLF 231
               +  +   +      S ++ L   G  L+ ++ +  ++    +  LSE+    C L 
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 232 E-----------FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG 280
                          L  V   ++  L +        +      + K+  + +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 281 NIPDAFANMTSLRELDLSENSL--IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRL 338
                  ++ SL  LDLSEN +     +     G+  +L  L LS N L    ++    +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL--RSMQKTGEI 382

Query: 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY 398
                 +L SLD+ +N     +P+S    E ++ L L     R  +   I    +L  L 
Sbjct: 383 LLT-LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLD 437

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
           + NN +D +    L     L  L IS N    L     F  L  +
Sbjct: 438 VSNNNLD-SFSLFL---PRLQELYISRNKLKTLPDASLFPVLLVM 478

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 2e-29
 Identities = 79/374 (21%), Positives = 130/374 (34%), Gaps = 47/374 (12%)

Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175
            +  LDLS N          L +   L+ L L  +        +F +L SL+ LDL+   
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS--- 82

Query: 176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC-GLFEFP 234
            + L S    W   LSSL+YLNL G      G +       L +L  L +       E  
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIR 140

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
            +     +SL  L++ +    +   Q L +I  + HL L  +     +      ++S+R 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 295 LDLSENSLIG---------------------------------GQIPKDLGSLCNLWDLD 321
           L+L + +L                                    ++ + +  L  +   D
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 322 LSGN---DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378
            + N   D +    + V  L K    ++  L + Q  L   L      LE +K + +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 379 LFRGSIPESIGNLSSLRELYL-HNNLMDGTIPKS--LGKLSHLVVLDISGNPWIGLVTEV 435
                      +L SL  L L  N +++  +  S   G    L  L +S N    +    
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 436 H-FSKLKNLKELHI 448
                LKNL  L I
Sbjct: 381 EILLTLKNLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (270), Expect = 3e-25
 Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 27/363 (7%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NIPPSFGNL 163
            I       L  L +LDLS N+   S   ++ G L  L+YLNL G  +    +   F NL
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 164 SSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223
           ++LQ L +      S         + L+SL  L ++ + L    S  +++   +  +  L
Sbjct: 123 TNLQTLRIGNVETFSEIRRID--FAGLTSLNELEIKALSLRNYQSQSLKS---IRDIHHL 177

Query: 224 HLPACGLFEFPPLSVVNFSSLLFLDLSSND---FNSSIPQWLLNISKLAHLDLSANNLQ- 279
            L          +     SS+ +L+L   +   F  S        S +  L    + L  
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 280 ---GNIPDAFANMTSLRELDLSENSL-----IGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
                +      +  L E++  + +L             +  L  +  + +    +    
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES---I 388
           + +           ++ + +  + +     +    L++L+ L L  NL      ++    
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 389 GNLSSLRELYLHNNLMD--GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
           G   SL+ L L  N +       + L  L +L  LDIS N     + +      + ++ L
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPD-SCQWPEKMRFL 415

Query: 447 HIA 449
           +++
Sbjct: 416 NLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 5/233 (2%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
           + +  ++  L L    +       +   ++L  L L S+  N+       ++  L HLDL
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
           S N+L       F  ++SL+ L+L  N      +     +L NL  L +       E   
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV----ETFS 137

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
            + R+     +SL  L++   +L  +   SL  + ++  L L  +     +      LSS
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
           +R L L +  +       L        +         ++T+  F++L  L   
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-GSVLTDESFNELLKLLRY 249

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 70/326 (21%), Positives = 124/326 (38%), Gaps = 24/326 (7%)

Query: 138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN 197
           S +     +    SF  +IP   G  ++++ LDL+    + +   D   L   ++LQ L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGD---LRACANLQVLI 56

Query: 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS- 256
           L+   ++        A   L SL  L L    L           SSL +L+L  N + + 
Sbjct: 57  LKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSLC 315
            +     N++ L  L +        I    FA +TSL EL++   SL   Q  + L S+ 
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIR 172

Query: 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL 375
           ++  L L  ++       F+  +     SS+  L+L   NL  F  + L   E    ++ 
Sbjct: 173 DIHHLTLHLSE-----SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 376 WGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV 435
                     ES   L  L    L  +             +   + D + +    +V+E+
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELS------EVEFDDCTLNGLGDFNPSE-SDVVSEL 280

Query: 436 HFSKLKNLKELHIAKYSLAPRLTLVF 461
              +   ++ LHI ++ L   L+ V+
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVY 306

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 21/132 (15%)

Query: 341 CANSSL---------------------ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
            +  +                      +SLDL  N +       L    NL++L L  + 
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 380 FRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSK 439
                 ++  +L SL  L L +N +        G LS L  L++ GNP+  L     F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 440 LKNLKELHIAKY 451
           L NL+ L I   
Sbjct: 122 LTNLQTLRIGNV 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 7e-29
 Identities = 54/335 (16%), Positives = 105/335 (31%), Gaps = 49/335 (14%)

Query: 132 IPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191
           I     +  + +   ++ +S    +     +  +++ LDL+    + L       L+  +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLS---GNPLSQISAADLAPFT 58

Query: 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSS 251
            L+ LNL    L +           L +L  L L    + E          S+  L  ++
Sbjct: 59  KLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAAN 108

Query: 252 NDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311
           N+  S +           ++ L+ N +           + ++ LDL  N +      +  
Sbjct: 109 NNI-SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 312 GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK 371
            S   L  L+L  N      I  V        + L++LDL  N L               
Sbjct: 166 ASSDTLEHLNLQYNF-----IYDVKGQVVF--AKLKTLDLSSNKLA-------------- 204

Query: 372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431
                       +     + + +  + L NN +   I K+L    +L   D+ GN +   
Sbjct: 205 -----------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 432 VTEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPE 466
                FSK + ++ +                  P 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 2e-28
 Identities = 50/338 (14%), Positives = 103/338 (30%), Gaps = 51/338 (15%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDL 171
            +        ++ ++ + + + +   S   ++ L+LSG   +          + L++L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
           ++             L  LS+L+ L+L                N +  L           
Sbjct: 66  SSNVLYETLD-----LESLSTLRTLDLNN--------------NYVQELLVG-------- 98

Query: 232 EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
                      S+  L  ++N+  S +           ++ L+ N +           + 
Sbjct: 99  ----------PSIETLHAANNNI-SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351
           ++ LDL  N +      +   S   L  L+L  N      I  V        + L++LDL
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-----IYDVKGQVVF--AKLKTLDL 198

Query: 352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN-LMDGTIPK 410
             N L  F+         +  + L  N     I +++    +L    L  N    GT+  
Sbjct: 199 SSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
              K   +  +       +    E   +          
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (250), Expect = 6e-23
 Identities = 60/365 (16%), Positives = 106/365 (29%), Gaps = 31/365 (8%)

Query: 106 EISPSVL-DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
           +IS + L     L  L+LS N        +   SL  LR L+L+      N         
Sbjct: 48  QISAADLAPFTKLELLNLSSNVL--YETLDL-ESLSTLRTLDLN-----NNYVQELLVGP 99

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
           S++ L       S +        SR    + + L    ++               +  L 
Sbjct: 100 SIETLHAANNNISRVSC------SRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLD 150

Query: 225 LPACGLFEFPPLSVV-NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP 283
           L    +       +  +  +L  L+L  N     +    +  +KL  LDLS+N L   + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKG-QVVFAKLKTLDLSSNKLA-FMG 207

Query: 284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343
             F +   +  + L  N L+   I K L    NL   DL GN      +    R     N
Sbjct: 208 PEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTL----RDFFSKN 261

Query: 344 SSLESLDLGQN-NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
             ++++       L G                           + +  L       L   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 403 LMD-GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVF 461
             +   +       +    +D         V +    + +    L   K +L  +++   
Sbjct: 322 GSETERLECERENQARQREIDALKEQ-YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 462 NVSPE 466
               E
Sbjct: 381 RAHAE 385

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 16/193 (8%)

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCN 316
           +I +   N ++     ++ ++L+  +     +  +++ELDLS N  +      DL     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59

Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW 376
           L  L+LS N L  E ++          S+L +LDL  N +       L    +++ L   
Sbjct: 60  LELLNLSSNVLY-ETLDLES------LSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVH 436
            N     +  S       + +YL NN +        G  S +  LD+  N    +     
Sbjct: 108 NNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 437 FSKLKNLKELHIA 449
            +    L+ L++ 
Sbjct: 165 AASSDTLEHLNLQ 177

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 36/334 (10%), Positives = 90/334 (26%), Gaps = 40/334 (11%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
              + YLDL LN            S + L +LNL       ++       + L+ LDL++
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSS 200

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              + +  +        + + +++L                N L  +             
Sbjct: 201 NKLAFMGPE----FQSAAGVTWISLRN--------------NKLVLI------------- 229

Query: 234 PPLSVVNFSSLLFLDLSSNDFNS-SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
              ++    +L   DL  N F+  ++  +     ++  +      ++          T  
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVP 286

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
                          P     L  L   + +     G   E +    +   +    +D  
Sbjct: 287 TLGHYGAYCCEDLPAPF-ADRLIALKRKEHALLSGQGSETERL-ECERENQARQREIDAL 344

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
           +      +     + +    L+         +       + L        +    +  + 
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ-QAVGQIELQHAT 403

Query: 413 GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
            + S L +L      +  +  E    +   +++ 
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW 437

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 17/273 (6%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
              +    L  LDLS N    + +     S   + +++L        I  +     +L+ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 169 LDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226
            DL  N F+  +L     ++ S+   +Q +  + V      +        L         
Sbjct: 242 FDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 227 ACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAF 286
                    L  +       L    ++    +     N ++   +D      +  I    
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 287 ANMTSLRELDLSENSLI-------GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339
               +   L+  + +L              D      +  ++L     +   ++ +  + 
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIV 416

Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372
           K            QNN          +   L  
Sbjct: 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 21/225 (9%), Positives = 61/225 (27%), Gaps = 9/225 (4%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSS 165
            I  ++   ++L + DL  N F    + +F    ++++ +     +       +    + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTV 285

Query: 166 LQILDLNTFYYSSLESDDVEWLSRL--SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223
             +     +    L +   + L  L       L+ +G +  +                E+
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN----QARQREI 341

Query: 224 HLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP 283
                          +   + + L+      +  +       ++L      A      + 
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQ 400

Query: 284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
            A    + L+ L           + +       + D D+  +   
Sbjct: 401 HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  113 bits (284), Expect = 2e-27
 Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 7/212 (3%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
           L  L  L L    +      +    ++L  L+L  N   +      + +SKL  L L  N
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336
            ++     AF  + SLR LDL E   +          L NL  L+L+  +L  EI     
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP 205

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
                    L+ LDL  N+L    P S   L +L+ L +  +  +     +  NL SL E
Sbjct: 206 ------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
           + L +N +          L HL  + +  NPW
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 1e-22
 Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 12/209 (5%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            ++   L+L  N           ++  L  L LS N+++     AF  + +L  L+L +N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 301 SLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNN-LGG 358
            L    IP      L  L +L L  N      IE +   +     SL  LDLG+   L  
Sbjct: 123 RL--TTIPNGAFVYLSKLKELWLRNNP-----IESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 359 FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHL 418
               +   L NL+ L L     R  IP ++  L  L EL L  N +    P S   L HL
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 419 VVLDISGNPWIGLVTEVHFSKLKNLKELH 447
             L +  +  I ++    F  L++L E++
Sbjct: 234 QKLWMIQSQ-IQVIERNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 283 PDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342
           P   +      ++     +L   ++P  +    N   L+L  N      I+ +   S   
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR--EVPDGI--STNTRLLNLHENQ-----IQIIKVNSFKH 86

Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHN 401
              LE L L +N++      +   L NL  L+L+ N    +IP      LS L+EL+L N
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145

Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           N ++     +  ++  L  LD+     +  ++E  F  L NL+ L++A
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 37/200 (18%)

Query: 106 EISPSVL-DLKHLNYLDLSLNNFRGSRIPNFL-GSLEKLRYLNLSGASFAGNIPP-SFGN 162
            I       L  L  L L  N      IP++    +  LR L+L        I   +F  
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222
           LS+L+ L+L       + +     L+ L  L  L+L G  LS        +   L  L +
Sbjct: 184 LSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAIRP---GSFQGLMHLQK 235

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
           L +    +      +  N  SL+ ++L+ N+  + +P                       
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLP----------------------- 271

Query: 283 PDAFANMTSLRELDLSENSL 302
            D F  +  L  + L  N  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
           ++   L+L +N +     NS   L +L+ILQL  N  R     +   L++L  L L +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 404 MDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY 451
           +      +   LS L  L +  NP I  +    F+++ +L+ L + + 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL 170

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (281), Expect = 5e-27
 Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 7/212 (3%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
           L  L  L L    + +    +    +SL  L+L  N            +SKL  L L  N
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336
            ++     AF  + SL  LDL E   +          L NL  L+L   +     I+ + 
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-----IKDMP 212

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
            L+      LE L++  N+     P S   L +LK L +  +        +   L+SL E
Sbjct: 213 NLTPL--VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
           L L +N +          L +LV L +  NPW
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 15/210 (7%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            +    +  +     S +PQ +   S   +L+L  NN+Q    D F ++  L  L L  N
Sbjct: 53  SNQFSKVVCTRRGL-SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 301 SLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF 359
           S+   QI       L +L  L+L  N      +  +   +    S L  L L  N +   
Sbjct: 110 SI--RQIEVGAFNGLASLNTLELFDNW-----LTVIPSGAFEYLSKLRELWLRNNPIESI 162

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSHL 418
              +  ++ +L  L L        I E     L +L+ L L    +   +P +L  L  L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGL 220

Query: 419 VVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
             L++SGN     +    F  L +LK+L +
Sbjct: 221 EELEMSGNH-FPEIRPGSFHGLSSLKKLWV 249

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 8e-14
 Identities = 46/198 (23%), Positives = 63/198 (31%), Gaps = 33/198 (16%)

Query: 106 EISPSVL-DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS 164
            I       L  L  L L  N      IP                         +F  + 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI--ESIP-----------------------SYAFNRVP 171

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
           SL  LDL       LE         L +L+YLNL   ++       +     L  L EL 
Sbjct: 172 SLMRLDLGE--LKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPNLTPLVGLEELE 224

Query: 225 LPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD 284
           +      E  P S    SSL  L + ++  +         ++ L  L+L+ NNL     D
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 285 AFANMTSLRELDLSENSL 302
            F  +  L EL L  N  
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
              ++  +   L   ++P+ +    N   L+L  N+     I+ +   +      LE L 
Sbjct: 55  QFSKVVCTRRGLS--EVPQGI--PSNTRYLNLMENN-----IQMIQADTFRHLHHLEVLQ 105

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           LG+N++      +   L +L  L+L+ N        +   LS LREL+L NN ++     
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           +  ++  L+ LD+     +  ++E  F  L NLK L++ 
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
           S+   L+L +NN+     ++   L +L++LQL  N  R     +   L+SL  L L +N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 404 MDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY 451
           +      +   LS L  L +  NP I  +    F+++ +L  L + + 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGEL 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (267), Expect = 6e-26
 Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 18/238 (7%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
           L +L  L L    + +  P +      L  L LS N     +P+ +     L  L +  N
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHEN 131

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFV 335
            +       F  +  +  ++L  N L    I       +  L  + ++  ++        
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------- 184

Query: 336 DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR 395
             + +    SL  L L  N +      SL  L NL  L L  N        S+ N   LR
Sbjct: 185 -TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGN-----PWIGLVTEVHFSKLKNLKELHI 448
           EL+L+NN +   +P  L    ++ V+ +  N              + +K  +   + +
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 63/301 (20%), Positives = 108/301 (35%), Gaps = 27/301 (8%)

Query: 89  EIPDSFTDNGTTYQLEG----EISPSVLD-LKHLNYLDLSLNNFRGSRI-PNFLGSLEKL 142
           ++P     +     L+     EI       LK+L+ L L  N    S+I P     L KL
Sbjct: 45  KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKL 102

Query: 143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVD 202
             L LS       +P       +LQ L ++    + +        + L+ +  + L    
Sbjct: 103 ERLYLSKNQLK-ELPE--KMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNP 156

Query: 203 LSKAGSSWVQAT--NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260
           L    SS ++      +  LS + +    +   P        SL  L L  N        
Sbjct: 157 LK---SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAA 210

Query: 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL 320
            L  ++ LA L LS N++      + AN   LREL L+ N L+  ++P  L     +  +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVV 268

Query: 321 DLSGNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFL--PNSLGQLENLKILQLWG 377
            L  N++      +F         +S   + L  N +  +   P++   +     +QL  
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 378 N 378
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 24/240 (10%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
            ++ P  + L L    + E       N  +L  L L +N  +   P     + KL  L L
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEII 332
           S N L+           +L+EL + EN +   ++ K     L  +  ++L  N L    I
Sbjct: 108 SKNQLKELPEKMP---KTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 333 E---FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIG 389
           E   F           L  + +   N+   +P  L    +L  L L GN        S+ 
Sbjct: 163 ENGAFQG------MKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLK 213

Query: 390 NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV--HFSKLKNLKELH 447
            L++L +L L  N +      SL    HL  L ++ N     + +V    +  K ++ ++
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK----LVKVPGGLADHKYIQVVY 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 9e-26
 Identities = 61/326 (18%), Positives = 109/326 (33%), Gaps = 67/326 (20%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
                 L++  +    + +P+ L +   +  L +   +   ++P     L +L++     
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLEV----- 88

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              + L S  V     L  L   +     L            +   L +L +    L   
Sbjct: 89  -SGNQLTSLPVL-PPGLLELSIFSNPLTHL----------PALPSGLCKLWIFGNQLTSL 136

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
           P L       L  L +S N   +S+P      S+L  L    N L  ++P      + L+
Sbjct: 137 PVL----PPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLT-SLPMLP---SGLQ 184

Query: 294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353
           EL +S+N L    +P     L  LW  +     L                S L+ L +  
Sbjct: 185 ELSVSDNQLA--SLPTLPSELYKLWAYNNRLTSLPALP------------SGLKELIVSG 230

Query: 354 NNLGGFLPNSLGQLE-----------------NLKILQLWGNLFRGSIPESIGNLSSLRE 396
           N L   LP    +L+                  L  L ++ N     +PES+ +LSS   
Sbjct: 231 NRLTS-LPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLD 422
           + L  N +     ++L +++      
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 4e-23
 Identities = 73/353 (20%), Positives = 114/353 (32%), Gaps = 73/353 (20%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
             H+  L +  NN   + +P       +LR L +SG     ++P     L  L I     
Sbjct: 60  PAHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
            +  +L           S L  L + G  L+             P L EL +    L   
Sbjct: 114 THLPAL----------PSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLASL 156

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT--- 290
           P L     S L  L   +N   +S+P      S L  L +S N L  ++P   + +    
Sbjct: 157 PAL----PSELCKLWAYNNQL-TSLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLW 207

Query: 291 --------------SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN---DLDGEIIE 333
                          L+EL +S N L    +P     L  L    +SGN    L      
Sbjct: 208 AYNNRLTSLPALPSGLKELIVSGNRL--TSLPVLPSELKEL---MVSGNRLTSLPMLP-- 260

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
                     S L SL + +N L   LP SL  L +   + L GN       +++  ++S
Sbjct: 261 ----------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
               Y    +       S  + +    L ++   W+    E   +        
Sbjct: 310 A-PGYSGPIIRFDMAGASAPRETRA--LHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 40/220 (18%), Positives = 59/220 (26%), Gaps = 30/220 (13%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
              L  L +S N    + +P     L KL   N    S    +P     L  L +     
Sbjct: 180 PSGLQELSVSDNQL--ASLPTLPSELYKLWAYNNRLTS----LPALPSGLKELIVSGNR- 232

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
                L S  V      S L+ L + G  L+               L  L +    L   
Sbjct: 233 -----LTSLPVL----PSELKELMVSGNRLTSLPML-------PSGLLSLSVYRNQLTRL 276

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
           P  S+++ SS   ++L  N  +    Q L  I+                  A     +L 
Sbjct: 277 PE-SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 294 E------LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
                  +   E            G   N     L  + L
Sbjct: 336 LAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 8e-25
 Identities = 48/211 (22%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
           L  L  L L    + +    +      L  L +S N     IP  L   S L  L +  N
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDN 133

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336
            ++      F+ + ++  +++  N L              L  L +S   L         
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--------T 185

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
            + K    +L  L L  N +       L +   L  L L  N  R     S+  L +LRE
Sbjct: 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
           L+L NN +   +P  L  L  L V+ +  N 
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 14/209 (6%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
                 LDL +ND +         +  L  L L  N +      AF+ +  L++L +S+N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-GF 359
            L+  +IP +L    +L +L +  N      I  V +       ++  +++G N L    
Sbjct: 113 HLV--EIPPNL--PSSLVELRIHDNR-----IRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419
                     L  L++        IP+      +L EL+L +N +     + L + S L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 420 VLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L +  N  I ++     S L  L+ELH+
Sbjct: 221 RLGLGHNQ-IRMIENGSLSFLPTLRELHL 248

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 46/258 (17%), Positives = 89/258 (34%), Gaps = 28/258 (10%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNL 163
           +I       L+ L  L +S N+     IP        L  L +        +P   F  L
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHL--VEIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGL 146

Query: 164 SSLQILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            ++  +++  N    S  E           +   L L  + +S+A  + +   ++  +L+
Sbjct: 147 RNMNCIEMGGNPLENSGFEPG---------AFDGLKLNYLRISEAKLTGIPK-DLPETLN 196

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
           ELHL    +       ++ +S L  L L  N         L  +  L  L L  N L   
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 282 IPDAFANMTSLRELDLSENSL--IGGQIPKDLG---SLCNLWDLDLSGNDLDGEIIEFVD 336
           +P    ++  L+ + L  N++  +G      +G          + L  N +    ++   
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--P 313

Query: 337 RLSKCANSSLESLDLGQN 354
              +C  +   ++  G  
Sbjct: 314 ATFRC-VTDRLAIQFGNY 330

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  102 bits (256), Expect = 1e-24
 Identities = 49/218 (22%), Positives = 73/218 (33%), Gaps = 11/218 (5%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
             +  +   + L    +   P  S     +L  L L SN            ++ L  LDL
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 274 SANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEI 331
           S N    ++    F  +  L  L L    L   ++       L  L  L L  N L  + 
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNAL--QA 143

Query: 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GN 390
           +   D      N  L  L L  N +      +   L +L  L L  N     +      +
Sbjct: 144 LP-DDTFRDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

Query: 391 LSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
           L  L  LYL  N +     ++L  L  L  L ++ NPW
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 4e-22
 Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 8/209 (3%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            ++   + L  N  +            L  L L +N L      AF  +  L +LDLS+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360
           + +    P     L  L  L L         ++ +        ++L+ L L  N L    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCG-----LQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 361 PNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419
            ++   L NL  L L GN    S+PE     L SL  L LH N +    P +   L  L+
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 420 VLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L +  N  +  +     + L+ L+ L +
Sbjct: 205 TLYLFANN-LSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 54/215 (25%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 117 LNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTF 174
              + L  N    S +P     +   L  L L     A  I   +F  L+ L+ LDL+  
Sbjct: 34  SQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS-- 88

Query: 175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP 234
             + L S D      L  L  L+L+   L + G    +    L +L  L+L    L   P
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG---LAALQYLYLQDNALQALP 145

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
             +  +  +L  L L  N  +S   +    +  L  L L  N +    P AF ++  L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 295 LDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLD 328
           L L  N+L    +P + L  L  L  L L+ N   
Sbjct: 206 LYLFANNLS--ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 33/159 (20%), Positives = 51/159 (32%), Gaps = 13/159 (8%)

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
                 +  L    +P  +        + L GN      I  V   S  A  +L  L L 
Sbjct: 14  VTTSCPQQGLQ--AVPVGI--PAASQRIFLHGNR-----ISHVPAASFRACRNLTILWLH 64

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPK- 410
            N L      +   L  L+ L L  N    S+  +    L  L  L+L    +   +   
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPG 123

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
               L+ L  L +  N  +  + +  F  L NL  L + 
Sbjct: 124 LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLH 161

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 2e-24
 Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 10/213 (4%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNL--QGNIPDAFANMTSLRELDLS 298
            SS   L+L SN   S        +++L  L LS+N L  +G    +    TSL+ LDLS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 299 ENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG 358
            N +I   +  +   L  L  LD   ++L  + +          N  L  LD+   +   
Sbjct: 87  FNGVI--TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRN--LIYLDISHTHTRV 140

Query: 359 FLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSH 417
                   L +L++L++ GN F+ +    I   L +L  L L    ++   P +   LS 
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHIAK 450
           L VL++S N     +    +  L +L+ L  + 
Sbjct: 201 LQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 7e-24
 Identities = 63/240 (26%), Positives = 91/240 (37%), Gaps = 13/240 (5%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND--FNSSIPQWLLNISKLAHL 271
           T +  S + L L +  L   P       + L  L LSSN   F     Q     + L +L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
           DLS N +   +   F  +  L  LD   ++L          SL NL  LD+S        
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 332 IEFVDRLSKCANSSLESLDLGQNN-LGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-G 389
               + LS     SLE L +  N+    FLP+   +L NL  L L        +  +   
Sbjct: 143 NGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 390 NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL-KNLKELHI 448
           +LSSL+ L + +N            L+ L VLD S N  I    +        +L  L++
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 8e-24
 Identities = 58/250 (23%), Positives = 93/250 (37%), Gaps = 16/250 (6%)

Query: 156 IPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATN 215
           +P      SS   L+L +    SL         +L+ L  L+L    LS       Q+  
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLS-FKGCCSQSDF 75

Query: 216 MLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ-WLLNISKLAHLDLS 274
              SL  L L   G+      + +    L  LD   ++          L++  L +LD+S
Sbjct: 76  GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134

Query: 275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEF 334
             + +      F  ++SL  L ++ NS     +P     L NL  LDLS        +E 
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-----LEQ 189

Query: 335 VDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI--GNLS 392
           +   +  + SSL+ L++  NN           L +L++L    N    +  +       S
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPS 248

Query: 393 SLRELYLHNN 402
           SL  L L  N
Sbjct: 249 SLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 56/228 (24%), Positives = 82/228 (35%), Gaps = 13/228 (5%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIPNF-LGSLEKLRYLNLSGASFAGNIPPSFGNL 163
            +   V D L  L  L LS N        +        L+YL+LS       +  +F  L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 100

Query: 164 SSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223
             L+ LD        +    V     L +L YL++       A +        L SL  L
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNG---LSSLEVL 155

Query: 224 HLPACGLFE-FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
            +      E F P       +L FLDLS        P    ++S L  L++S NN     
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 283 PDAFANMTSLRELDLSENSLIGGQIPKDL--GSLCNLWDLDLSGNDLD 328
              +  + SL+ LD S N ++     K        +L  L+L+ ND  
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM--TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 45/207 (21%), Positives = 75/207 (36%), Gaps = 33/207 (15%)

Query: 243 SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302
           S   +  +S    +S+P  +   S    L+L +N LQ      F  +T L +L LS N L
Sbjct: 8   SGTEIRCNSKGL-TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 303 IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPN 362
                     S                              +SL+ LDL  N +   + +
Sbjct: 65  SFKGCCS--QSDFGT--------------------------TSLKYLDLSFNGVIT-MSS 95

Query: 363 SLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVL 421
           +   LE L+ L    +  +     S+  +L +L  L + +             LS L VL
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 422 DISGNPWIGLVTEVHFSKLKNLKELHI 448
            ++GN +        F++L+NL  L +
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDL 182

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 8e-24
 Identities = 81/358 (22%), Positives = 135/358 (37%), Gaps = 35/358 (9%)

Query: 116 HLNYLDLSLNNFRGSRI-PNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNT 173
           H+NY+DLSLN+   + +       L+ L++L +   +    I   +F  LSSL IL L+ 
Sbjct: 31  HVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD- 87

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQAT--NMLPSLSELHLPACGLF 231
             Y+     +    + L++L+ L L   +L     + +       L SL  L L    + 
Sbjct: 88  --YNQFLQLETGAFNGLANLEVLTLTQCNLD---GAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 232 EFPPLSV-VNFSSLLFLDLSSN----------DFNSSIPQWLLNISKLAHLDLSANNLQG 280
           +  P S  +N      LDL+ N                   LL +S +   D++   L  
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 281 NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEF----VD 336
                    TS+  LDLS N        +   ++       L  ++       F      
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 337 RLSKCA-----NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GN 390
                       S +++ DL ++ +   L +      +L+ L L  N     I ++    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG 321

Query: 391 LSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           L+ L +L L  N +     +    L  L VLD+S N  I  + +  F  L NLKEL +
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 3e-23
 Identities = 77/324 (23%), Positives = 125/324 (38%), Gaps = 38/324 (11%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPPS--FG 161
           ++     + L +L  L L+  N  G+ +  NF   L  L  L L   +    I P+  F 
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFL 151

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ-----ATNM 216
           N+    +LDL      S+  +D+           L L  + L      W+          
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFL-------------DLSSNDFNSSIPQWL- 262
             S++ L L   G  E       +  +   +                  +F         
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 263 -LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDL 320
            L  S +   DLS + +   +   F++ T L +L L++N +   +I  +    L +L  L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI--NKIDDNAFWGLTHLLKL 328

Query: 321 DLSGNDLDGEIIEFV-DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
           +LS N L G I   + + L K     LE LDL  N++      S   L NLK L L  N 
Sbjct: 329 NLSQNFL-GSIDSRMFENLDK-----LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382

Query: 380 FRGSIPESI-GNLSSLRELYLHNN 402
            + S+P+ I   L+SL++++LH N
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 3e-22
 Identities = 72/358 (20%), Positives = 130/358 (36%), Gaps = 46/358 (12%)

Query: 102 QLEGEISPSVLD-LKHLNYLDLSLNNFRGSRIP-NFLGSLEKLRYLNLSGASFAGNIPP- 158
                I  +    L  L  L L  N F   ++       L  L  L L+  +  G +   
Sbjct: 65  TPGLVIRNNTFRGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122

Query: 159 -SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG--------VDLSKAGSS 209
             F  L+SL++L L       ++         +     L+L           DL      
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASF--FLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 210 WVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQW---LLNIS 266
                  L S++   +    L      +    +S+  LDLS N F  S+ +     +  +
Sbjct: 181 HFTLLR-LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 267 KLAHL----------DLSANNLQGNIPDAFANM--TSLRELDLSENSLIGGQIPKDL-GS 313
           K+  L               N +      F  +  + ++  DLS++ +    + K +   
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSH 297

Query: 314 LCNLWDLDLSGNDLDGEIIEFV-DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372
             +L  L L+ N+++ +I +     L+      L  L+L QN LG         L+ L++
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLT-----HLLKLNLSQNFLGSIDSRMFENLDKLEV 351

Query: 373 LQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGNPW 428
           L L  N  R ++ +     L +L+EL L  N +  ++P     +L+ L  + +  NPW
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 59/292 (20%), Positives = 104/292 (35%), Gaps = 33/292 (11%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSS--LQILD 170
            L  L  L L  NN +  +  +F  ++ +   L+L+             N       +L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 171 LNTFYYSSLESDDVEWLS-----RLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
           L++     +    + W       + +S+  L+L G    ++ +           +  L L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 226 P-------ACGLFEFPPLSVVNF-----SSLLFLDLSSNDFNS---SIPQWLLNISKLAH 270
                   + G   F       F     S +   DLS +   +   S+       + L  
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF---TDLEQ 303

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDG 329
           L L+ N +     +AF  +T L +L+LS+N L  G I   +  +L  L  LDLS N +  
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRA 361

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
              +    L      +L+ L L  N L         +L +L+ + L  N + 
Sbjct: 362 LGDQSFLGLP-----NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 56/260 (21%), Positives = 92/260 (35%), Gaps = 23/260 (8%)

Query: 72  ICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSR 131
           IC+               +      +   Y L  E   +      +  LDLS N F+ S 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 132 IPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191
              F  ++   +  +L       N      +       D + F +  LE+         S
Sbjct: 229 AKRFFDAIAGTKIQSL----ILSNSYNMGSSFGHTNFKDPDNFTFKGLEA---------S 275

Query: 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSS 251
            ++  +L    +     S     +    L +L L    + +    +    + LL L+LS 
Sbjct: 276 GVKTCDLSKSKIFALLKS---VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 252 NDFNSSIPQWLL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL--IGGQIP 308
           N    SI   +  N+ KL  LDLS N+++     +F  + +L+EL L  N L  +   I 
Sbjct: 333 NFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 309 KDLGSLCNLWDLDLSGNDLD 328
             L SL  +W   L  N  D
Sbjct: 392 DRLTSLQKIW---LHTNPWD 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 1e-23
 Identities = 61/362 (16%), Positives = 117/362 (32%), Gaps = 58/362 (16%)

Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
           I+P  +    L       +N     +P    +++       + + +  N PP  G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 167 QILDLNTFYYSSLESDDVEWLS------RLSSLQYLNLEG-------------VDLSKAG 207
            +  L           ++  L           L+ L                   L    
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDN 120

Query: 208 SSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267
           ++    +++ P L  L +    L + P L   N S L  +D+ +N     +P    +   
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLPELQ--NSSFLKIIDVDNNSL-KKLPDLPPS--- 174

Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
           L  +    N L+  +P+   N+  L  +    NSL   ++P       +L  +    N L
Sbjct: 175 LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK--KLP---DLPLSLESIVAGNNIL 227

Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
                E +  L       L ++    N L   LP+    LE L +   +       +PE 
Sbjct: 228 -----EELPELQNL--PFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT----DLPEL 275

Query: 388 IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
             +L+ L       +     + +    L +   L+ S N    L          +L+EL+
Sbjct: 276 PQSLTFLDVSENIFS----GLSELPPNLYY---LNASSNEIRSL-----CDLPPSLEELN 323

Query: 448 IA 449
           ++
Sbjct: 324 VS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 74/394 (18%), Positives = 134/394 (34%), Gaps = 81/394 (20%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP--------------- 157
              HL  L  S N+   + +P    SL+ L   N +  + +   P               
Sbjct: 89  LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
           P   N S L+I+D++      L            SL+++      L +     +     L
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLEE-----LPELQNL 194

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
           P L+ ++     L + P L      SL  +   +N     +P+ L N+  L  +    N 
Sbjct: 195 PFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL-EELPE-LQNLPFLTTIYADNNL 248

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
           L+  +PD      SL  L++ +N L    +P+   SL  L   +   + L  E+   +  
Sbjct: 249 LK-TLPD---LPPSLEALNVRDNYLT--DLPELPQSLTFLDVSENIFSGLS-ELPPNLYY 301

Query: 338 LSKCAN---------SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI 388
           L+  +N          SLE L++  N L   LP        L+ L    N     +PE  
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELP 356

Query: 389 GNLSSLRELYLHNNLMDGTIPKSLGKL----------------SHLVVLDISGNPWIGLV 432
            NL   ++L++  N +    P     +                 +L  L +  NP     
Sbjct: 357 QNL---KQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412

Query: 433 TEVHFSKLKNLKELHIAKYSLAPRLTLVFNVSPE 466
                   +++++L +    +          + +
Sbjct: 413 DI-----PESVEDLRMNSERVVDPYEFAHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 61/305 (20%), Positives = 103/305 (33%), Gaps = 52/305 (17%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
           P + +L  L  +    N+    ++P+   SLE +               P   NL  L  
Sbjct: 189 PELQNLPFLTAIYADNNSL--KKLPDLPLSLESI---VAGNNIL--EELPELQNLPFLTT 241

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
           +  +     +L     +    L +L   +    DL +   S       L  L        
Sbjct: 242 IYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPELPQS-------LTFLDVSENIFS 290

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN 288
           GL E PP       +L +L+ SSN+  S           L  L++S N L   +P   A 
Sbjct: 291 GLSELPP-------NLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLI-ELP---AL 335

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG--EIIEFVDRLSKCAN--- 343
              L  L  S N L   ++P+      NL  L +  N L    +I E V+ L   ++   
Sbjct: 336 PPRLERLIASFNHL--AEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390

Query: 344 -----SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY 398
                 +L+ L +  N L    P+    +E+L++              +      L +  
Sbjct: 391 VPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMN---SERVVDPYEFAHETTDKLEDDV 446

Query: 399 LHNNL 403
             ++ 
Sbjct: 447 FEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.1 bits (219), Expect = 5e-19
 Identities = 68/350 (19%), Positives = 125/350 (35%), Gaps = 78/350 (22%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
           P + +   L  +D+  N+    ++P+   SLE   ++            P   NL  L  
Sbjct: 147 PELQNSSFLKIIDVDNNSL--KKLPDLPPSLE---FIAAGNNQL--EELPELQNLPFLTA 199

Query: 169 LDLN---------------TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA 213
           +  +               +    +   +++  L  L  L  +  +   L          
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-------TL 252

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
            ++ PSL  L++    L + P L      SL FLD+S N F+  + +   N   L +L+ 
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSG-LSELPPN---LYYLNA 304

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
           S+N ++ ++ D      SL EL++S N LI  ++P     L  L     S N L  E+ E
Sbjct: 305 SSNEIR-SLCD---LPPSLEELNVSNNKLI--ELPALPPRLERL---IASFNHL-AEVPE 354

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNL-- 391
                      +L+ L +  N L    P+    +E+L++     N     +PE   NL  
Sbjct: 355 LP--------QNLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPELPQNLKQ 400

Query: 392 ---------------SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
                           S+ +L +++  +      +      L       +
Sbjct: 401 LHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 39/247 (15%), Positives = 70/247 (28%), Gaps = 57/247 (23%)

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN---- 288
           F     V+ + L      S++  + +P    N+        + +  + N P         
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 289 ---------MTSLRELDLSENSL------IGG------------QIPKDLGSLCNLWDLD 321
                         EL+L+   L                     ++P+   SL +L   +
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDN 120

Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
            +   L                  LE L +  N L   LP  L     LKI+ +  N  +
Sbjct: 121 NNLKALSDLP------------PLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK 166

Query: 382 GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441
             +P+   +   L  +   NN +       L  L  L  +    N    L          
Sbjct: 167 -KLPDLPPS---LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKL-----PDLPL 215

Query: 442 NLKELHI 448
           +L+ +  
Sbjct: 216 SLESIVA 222

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 39/330 (11%)

Query: 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FG 161
            E   + + L          S  +   + IP+  G  E ++ L+LS       I  S   
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSL--NSIPS--GLTEAVKSLDLSNNRIT-YISNSDLQ 73

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
              +LQ L L     + + + + +  S L SL++L+L    LS   SSW +    L SL+
Sbjct: 74  RCVNLQALVL---TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP---LSSLT 127

Query: 222 ELHLPACGLFEFPPLSV-VNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSANNLQ 279
            L+L           S+  + + L  L + + D  + I  +    ++ L  L++ A++LQ
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 280 GNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRL 338
              P +  ++ ++  L L     I   + +       ++  L+L   DLD          
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHF------ 239

Query: 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY 398
                          + L     NSL +    + +++        + + +  +S L EL 
Sbjct: 240 ---------------SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
              N +         +L+ L  + +  NPW
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.3 bits (214), Expect = 9e-19
 Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
           + +  ++  L L    +       +    +L  L L+SN  N+       ++  L HLDL
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
           S N L       F  ++SL  L+L  N             L  L  L +   D   +I  
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 334 FV-DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNL 391
                L     + LE L++  ++L  + P SL  ++N+  L L        + E      
Sbjct: 168 KDFAGL-----TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT 221

Query: 392 SSLRELYLHNNLMDGT--------IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
           SS+  L L +  +D             SL K      + I+      ++     +++  L
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGL 279

Query: 444 KELHI 448
            EL  
Sbjct: 280 LELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 8e-18
 Identities = 53/236 (22%), Positives = 87/236 (36%), Gaps = 14/236 (5%)

Query: 216 MLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA 275
           +        + +    E    + ++         SS    +SIP  L     +  LDLS 
Sbjct: 5   LWMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSL-NSIPSGLT--EAVKSLDLSN 61

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEF 334
           N +            +L+ L L+ N +    I +D   SL +L  LDLS N L      +
Sbjct: 62  NRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119

Query: 335 VDRLSKCANSSLESLDLGQNNLGGFLPNSL-GQLENLKILQLWGNLFRGSIPESI-GNLS 392
              L     SSL  L+L  N        SL   L  L+IL++        I       L+
Sbjct: 120 FKPL-----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 393 SLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L EL +  + +    PKSL  + ++  L +       L+ E+      +++ L +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLEL 229

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.0 bits (244), Expect = 6e-23
 Identities = 70/308 (22%), Positives = 98/308 (31%), Gaps = 25/308 (8%)

Query: 87  SPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN 146
           S   PD  +        + E+      L++L  L          +  + + SL  L+ L 
Sbjct: 18  SDPKPDWSSAFNCLGAADVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSL-SLKRLT 74

Query: 147 LSGASFAGNIPPS---FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDL 203
           +  A     I         +S LQ L L     +      +   +    L  LNL  V  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT-GPDLNILNLRNVSW 133

Query: 204 SKAGSSWVQATNML-PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQW- 261
           +   +   +    L P L  L +       F    V  F +L  LDLS N          
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 262 ---LLNISKLAHLDLSANNLQ---GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC 315
               L    L  L L    ++   G      A    L+ LDLS NSL             
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL 375
            L  L+LS   L         ++ K   + L  LDL  N L      S  +L  +  L L
Sbjct: 254 QLNSLNLSFTGL--------KQVPKGLPAKLSVLDLSYNRLDRNP--SPDELPQVGNLSL 303

Query: 376 WGNLFRGS 383
            GN F  S
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 12/220 (5%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD---AFANMTSLRELD 296
             S    L     + +      ++    L  L + A  +   I         ++ L+EL 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 297 LSENSLIG-GQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNN 355
           L    + G    P    +  +L  L+L           ++  L +     L+ L + Q +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 356 LGGFLPNSLGQLENLKILQLWGNLFRGSIPESI----GNLSSLRELYLHNNLM---DGTI 408
              F    +     L  L L  N   G              +L+ L L N  M    G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 409 PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
                    L  LD+S N                L  L++
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 9e-16
 Identities = 64/286 (22%), Positives = 98/286 (34%), Gaps = 25/286 (8%)

Query: 178 SLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP----SLSELHLPACGLFEF 233
            L + DVE      SL+YL L+ VD       +      L     ++    +P+  LF  
Sbjct: 30  CLGAADVELYGGGRSLEYL-LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN----- 288
             L V+  S L  L L + +   + P  LL  +      L+  N+     DA+       
Sbjct: 89  --LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 289 -MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347
               L+ L +++   +       +     L  LDLS N   GE    +  L      +L+
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGER-GLISALCPLKFPTLQ 204

Query: 348 SLDLGQNN---LGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNL 403
            L L         G           L+ L L  N  R +         S L  L L    
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 404 MDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           +   +PK L   + L VLD+S N    L       +L  +  L + 
Sbjct: 265 LK-QVPKGL--PAKLSVLDLSYNR---LDRNPSPDELPQVGNLSLK 304

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.6 bits (248), Expect = 1e-22
 Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 13/326 (3%)

Query: 83  LKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKL 142
             L      +          ++   +  + ++K +   +                 L  L
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVD 202
              N+     +          +++    ++               S  +SL+ L++  V 
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS-GTSLKALSIHQVV 284

Query: 203 LSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWL 262
               G        +  +++  +    G      L     S  L LD S+N    ++ +  
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 263 LNISKLAHLDLSANNLQ--GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL 320
            ++++L  L L  N L+    I +    M SL++LD+S+NS+   +   D     +L  L
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
           ++S N L        D + +C    ++ LDL  N +   +P  + +LE L+ L +  N  
Sbjct: 405 NMSSNILT-------DTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

Query: 381 RGSIPESI-GNLSSLRELYLHNNLMD 405
           + S+P+ I   L+SL++++LH N  D
Sbjct: 457 K-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 1e-21
 Identities = 64/357 (17%), Positives = 134/357 (37%), Gaps = 26/357 (7%)

Query: 108 SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNL-----SGASFAGNIPPSFGN 162
             SVL + HLN   + L              L+     +L     +   F   +  S   
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY---LNLEGVDLSKAGSSWVQATNMLPS 219
           +++L++ ++      +  S  +  L++L +      L L  ++ +      +       +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 220 LSELHLPACGL-----FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS 274
           +    +    L     F     S  +  +L    + S+ F           S +   + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD--GEII 332
            +  +       + ++    LD S N L    + ++ G L  L  L L  N L    +I 
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLKELSKIA 367

Query: 333 EFVDRLSKCANSSLESLDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPESIGNL 391
           E   ++      SL+ LD+ QN++            ++L  L +  N+   +I   +   
Sbjct: 368 EMTTQM-----KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--P 420

Query: 392 SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
             ++ L LH+N +  +IPK + KL  L  L+++ N  +  V +  F +L +L+++ +
Sbjct: 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 4e-19
 Identities = 57/344 (16%), Positives = 120/344 (34%), Gaps = 20/344 (5%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDL-- 171
             +L +LDLS N F    I    G++ +L++L LS      +      +L+  ++L +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 172 -NTFYYSSLESDDVEWLSRLSSLQYLNLE---GVDLSKAGSSWVQATNMLPSLSELHLPA 227
                    E         L  +   N E    +D+S    + ++ +N+   L +     
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
                    +    S+L   ++ +   +      L+  + + +  +S   LQG +     
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 288 NM--TSLRELDLSENSLIGGQIPKDLG--SLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343
           +   TSL+ L + +        P+        N+   + + +      +    ++     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI----- 323

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIG---NLSSLRELYLH 400
           S    LD   N L   +  + G L  L+ L L  N  +  + +       + SL++L + 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDIS 382

Query: 401 NN-LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
            N +              L+ L++S N     +      ++K L
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 62/374 (16%), Positives = 123/374 (32%), Gaps = 43/374 (11%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP---------------- 158
           +    L++S N        + + SL KLR L +S       +                  
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 159 ------SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ 212
                 S     +L+ LDL+   + +L          +S L++L L    L K+    + 
Sbjct: 79  NKLVKISCHPTVNLKHLDLSFNAFDALPICKE--FGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 213 ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD 272
             N+   L  L        +   L   N  SL  +  ++ +F+  +   +  ++ L   +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 273 LSANNLQGNIPDAFANMTSL------RELDLSENSLIGGQIPKDLG--SLCNLWDLDLSG 324
           +             + +  L        L L+          + L       +W   +S 
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
             L G++       S  +  +L    +  +  G           N+ I     +  R   
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 385 PESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN-----PWIGLVTEVHFSK 439
                 +S    L   NNL+  T+ ++ G L+ L  L +  N       I  +     ++
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM----TTQ 372

Query: 440 LKNLKELHIAKYSL 453
           +K+L++L I++ S+
Sbjct: 373 MKSLQQLDISQNSV 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 61/314 (19%), Positives = 100/314 (31%), Gaps = 52/314 (16%)

Query: 164 SSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223
               IL+++  Y S L + D   +  LS L+ L +                N +  L   
Sbjct: 21  QKTTILNISQNYISELWTSD---ILSLSKLRILIISH--------------NRIQYLDI- 62

Query: 224 HLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP 283
                 +F+F          L +LDLS N               L HLDLS N     +P
Sbjct: 63  -----SVFKF-------NQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFD-ALP 106

Query: 284 DA--FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
               F NM+ L+ L LS   L   +      +  N+  + L   +  GE  +  + L   
Sbjct: 107 ICKEFGNMSQLKFLGLSTTHL--EKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDF 163

Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSL------R 395
              SL  +          L  S+  + NL++  +   L        +  L+ L       
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 396 ELYLHNNLMDGTIPKSLGKL---SHLVVLDISGNPWIGLVTEVHFS----KLKNLKELHI 448
            L L+N          + +L   + +    IS     G +    F      LK L    +
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 449 AKYSLAPRLTLVFN 462
                    + ++ 
Sbjct: 284 VSDVFGFPQSYIYE 297

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.9 bits (236), Expect = 5e-21
 Identities = 58/333 (17%), Positives = 117/333 (35%), Gaps = 16/333 (4%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLE----KLRYLNLSGASFAGNIPPSFG 161
                 L + +   L L  +      +   +        +L  + L+  +    +     
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRL--SSLQYLNLEGVDLSKAG--SSWVQATNML 217
                 +L++   +  +     V+         ++YLN+  + +++      +  +   L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
            SL   H+               F+ +    LS +D          + S    L+ + N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337
              ++    + +  L+ L L  N L      K      N+  L+     L+       DR
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397
               A  S+  L+L  N L G +   L     +K+L L  N    SIP+ + +L +L+EL
Sbjct: 423 TCAWA-ESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQEL 478

Query: 398 YLHNNLMDGTIPK-SLGKLSHLVVLDISGNPWI 429
            + +N +  ++P     +L+ L  + +  NPW 
Sbjct: 479 NVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 5e-18
 Identities = 62/352 (17%), Positives = 133/352 (37%), Gaps = 18/352 (5%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSS 165
           ++    +   HL+ + L L ++           +     L+L     +        ++++
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 166 LQILDLNTFYYSSLESDD----VEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
           L  L L+    +          +  L+R  +L  + L+ ++ +   S  +        + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 222 ELHLPACGLFEFPPLSVVNFS-----SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
            L++    + E        +S     SL+   + +  F  S        +++    LS +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336
           +          + +S   L+ ++N      + +   +L  L  L L  N L     +   
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVAL 397

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQL-ENLKILQLWGNLFRGSIPESIGNLSSLR 395
                  SSLE+LD+  N+L     +      E++ +L L  N+  GS+   +     ++
Sbjct: 398 MTKN--MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVK 453

Query: 396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
            L LHNN +  +IPK +  L  L  L+++ N  +  V +  F +L +L+ + 
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 61/358 (17%), Positives = 119/358 (33%), Gaps = 27/358 (7%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS--FGN 162
            +   V    + L YLD+S N      I      +  LR+L+LS   F   +P    FGN
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRL--QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGN 144

Query: 163 LSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222
           L+ L  L L     +     D   L  ++ L    +    +S         +  +P+ + 
Sbjct: 145 LTKLTFLGL---SAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
           LHL       F     ++ ++L  L LS+   N    Q L+          +  N+    
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 283 PD----------AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII 332
            +           F     +  L++   ++   +I ++  +        L    +  ++ 
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 333 EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLS 392
            F         + +    L  ++             +   L    N+F  S+ +    L 
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 393 SLRELYLHNNLMD--GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L+ L L  N +     +      +S L  LD+S N       +   +  +++  L++
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 58/351 (16%), Positives = 121/351 (34%), Gaps = 27/351 (7%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSF--GNLSSLQILDL 171
           L  L +L LS   FR   +            L+L      G    S    N + L ++  
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
               +S   +  V  L  L  L  + L   +  +   +++      P+L  + L      
Sbjct: 205 PNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRL-MTFLSELTRGPTLLNVTLQHIETT 262

Query: 232 EFPPLSVVNF---SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN-----IP 283
               + +  F     + +L++ +      I +     S+ A   L   +++         
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343
             ++    +    LS +      +     S  +   L+ + N     + +    L +   
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGCSTLKR--- 378

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN----LFRGSIPESIGNLSSLRELYL 399
             L++L L +N L           +N+  L+        L   +   +     S+  L L
Sbjct: 379 --LQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 400 HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAK 450
            +N++ G++ + L     + VLD+  N  + +  +V    L+ L+EL++A 
Sbjct: 436 SSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVT--HLQALQELNVAS 482

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 9e-14
 Identities = 51/327 (15%), Positives = 100/327 (30%), Gaps = 22/327 (6%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNL------SSLQ 167
           +  L +LDLS N+F    +    G+L KL +L LS A F         +L        L 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
              +      SL+  +   L  +     L    V++S      +Q +N+   L++ +   
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI--KLNDENCQR 237

Query: 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
              F           ++    + +    S           + +L++    +   I     
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 288 NMTSLRELDLSENSLIGGQIPKDLG----SLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343
             +      L    +                  +    LS +D     +           
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP----- 352

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN- 402
           SS   L+  QN     +      L+ L+ L L  N  + +  +      ++  L   +  
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 403 ---LMDGTIPKSLGKLSHLVVLDISGN 426
              L      ++      ++VL++S N
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 52/322 (16%), Positives = 101/322 (31%), Gaps = 25/322 (7%)

Query: 138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN 197
           S E    ++ S  +   ++P         + L L+    S L   D   +S LS L+ L 
Sbjct: 29  SNELESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPD---ISFLSELRVLR 82

Query: 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS- 256
           L    +                L  L +    L           +SL  LDLS NDF+  
Sbjct: 83  LSHNRIRSLDFH---VFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVL 136

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCN 316
            + +   N++KL  L LSA   +       A++  L  + L   S        +   + N
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPN 195

Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL- 375
              L L  +      ++    ++   +  L ++ L   N    +           +L + 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 376 --WGNLFRGSIPESIGNL--SSLRELYLHNNLMDGTIPK-----SLGKLSHLVVLDISGN 426
                       +         +  L ++N  +   I +     S   L  L++  +   
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 427 PWIGLVTEVHFSKLKNLKELHI 448
            ++     + +S    +    +
Sbjct: 316 VFLFSKEAL-YSVFAEMNIKML 336

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 18/215 (8%)

Query: 242 SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS 301
                +D S+ +  + +P+ L    +   L LS N++        + ++ LR L LS N 
Sbjct: 31  ELESMVDYSNRNL-THVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 302 LIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360
           +    +   +     +L  LD+S N L          +S C  +SL  LDL  N+     
Sbjct: 88  I--RSLDFHVFLFNQDLEYLDVSHNRLQN--------ISCCPMASLRHLDLSFNDFDVLP 137

Query: 361 PNSL-GQLENLKILQLWGNLFRGSIPESIGNLS-SLRELYLHNNLMDGTIPKSLGKLSHL 418
                G L  L  L L    FR      + +L  S   L L +  + G   +SL    + 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NT 196

Query: 419 VVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
            VL +  +P   L +      +  L  L ++   L
Sbjct: 197 TVLHLVFHPN-SLFSVQVNMSVNALGHLQLSNIKL 230

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 9e-20
 Identities = 57/284 (20%), Positives = 103/284 (36%), Gaps = 49/284 (17%)

Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
              N  SL         Y+++     ++ S     +   L G + ++A S  +    ++ 
Sbjct: 6   PINNNFSLSQNSF----YNTISGTYADYFSAWDKWEKQALPGENRNEAVS--LLKECLIN 59

Query: 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNL 278
             SEL L    L   P         +  L+++ N    S+P+     + L +LD   N L
Sbjct: 60  QFSELQLNRLNLSSLPD---NLPPQITVLEITQNAL-ISLPE---LPASLEYLDACDNRL 112

Query: 279 QGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL-----------------CNLWDLD 321
              +P+  A+   L+ LD+  N L    +P+    L                  +L  L 
Sbjct: 113 S-TLPELPAS---LKHLDVDNNQLT--MLPELPALLEYINADNNQLTMLPELPTSLEVLS 166

Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
           +  N L   + E           SLE+LD+  N L   LP    +  + +  +++     
Sbjct: 167 VRNNQL-TFLPELP--------ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRE 216

Query: 382 ---GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD 422
                IPE+I +L     + L +N +   I +SL + +      
Sbjct: 217 NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 39/307 (12%), Positives = 78/307 (25%), Gaps = 87/307 (28%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
              L +LD+  N    + +P     LE +                   N  + Q+  L  
Sbjct: 119 PASLKHLDVDNNQL--TMLPELPALLEYI-------------------NADNNQLTMLP- 156

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
                            +SL+ L++                N L  L EL          
Sbjct: 157 --------------ELPTSLEVLSVRN--------------NQLTFLPEL---------- 178

Query: 234 PPLSVVNFSSLLFLDLSSNDFNS---SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMT 290
                    SL  LD+S+N   S      +   +           N +  +IP+   ++ 
Sbjct: 179 -------PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
               + L +N L   +I + L       D             +        A++      
Sbjct: 231 PTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGS---------------IPESIGNLSSLR 395
             + +    + ++    E+      + +    +                 E +   + LR
Sbjct: 290 ENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELR 349

Query: 396 ELYLHNN 402
           +      
Sbjct: 350 QQSFAVA 356

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 5e-19
 Identities = 63/350 (18%), Positives = 118/350 (33%), Gaps = 50/350 (14%)

Query: 99  TTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP 158
             ++++   + S   L  L  LD   ++   + +      L  L  L  +  +    +  
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGI-EKLTGLTKLICTSNNIT-TLD- 80

Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
                ++L  L  ++   ++L+      ++ L+ L YLN +   L+K   S        P
Sbjct: 81  -LSQNTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLDVS------QNP 127

Query: 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNL 278
            L+ L+     L E   + V + + L  LD   N   + +   +   ++L  LD S N +
Sbjct: 128 LLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 279 QGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRL 338
              +    +    L  L+   N++       DL     L  LD S N L    I+     
Sbjct: 183 T-ELD--VSQNKLLNRLNCDTNNITK----LDLNQNIQLTFLDCSSNKL--TEIDVTP-- 231

Query: 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY 398
                + L   D   N L       +  L  L  L          I   + + + L    
Sbjct: 232 ----LTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQ 281

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
                    +   +   + L +LD         +TE+  S+   L  L++
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAA----GITELDLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 3e-18
 Identities = 62/348 (17%), Positives = 97/348 (27%), Gaps = 52/348 (14%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
             +  L  L  L  + NN   + +   L     L YL         N+      L+ L  
Sbjct: 58  TGIEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTY 110

Query: 169 LDLNTFYYSSLESDDVEWLSRLSSL-------------QYLNLEGVDLSKAGSSWVQATN 215
           L+ +    + L   DV     L+ L                 L  +D             
Sbjct: 111 LNCD---TNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT 167

Query: 216 MLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA 275
               L+ L      + E   L V     L  L+  +N+  + +   L    +L  LD S+
Sbjct: 168 PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSS 221

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV 335
           N L   I      +T L   D S N L       D+ +L  L  L     DL        
Sbjct: 222 NKLT-EID--VTPLTQLTYFDCSVNPLT----ELDVSTLSKLTTLHCIQTDLL------- 267

Query: 336 DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR 395
             +    N+ L             L   +     L +L          +   +     L 
Sbjct: 268 -EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
            LYL+N  +   +   +   + L  L           +      L N 
Sbjct: 322 YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNN 366

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 59/337 (17%), Positives = 105/337 (31%), Gaps = 58/337 (17%)

Query: 118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS 177
           + +  +        I      L  L  L+   +S   ++      L+ L  L   +   +
Sbjct: 22  SEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT 77

Query: 178 SLESDDVEWLSRLSSLQYLNLEG-----VDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
           +L+      LS+ ++L YL  +      +D++            L  L+ L+     L +
Sbjct: 78  TLD------LSQNTNLTYLACDSNKLTNLDVTP-----------LTKLTYLNCDTNKLTK 120

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
                      L +L+ + N   + I   + + ++L  LD   N     +       T L
Sbjct: 121 LDVS---QNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
             LD S N +       D+     L  L+   N++         +L    N  L  LD  
Sbjct: 173 TTLDCSFNKITEL----DVSQNKLLNRLNCDTNNI--------TKLDLNQNIQLTFLDCS 220

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
            N L       +  L  L       N     +  S   LS L  L+     +   I   L
Sbjct: 221 SNKLTEI---DVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID--L 271

Query: 413 GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
              + L+     G      + E+  +    L  L   
Sbjct: 272 THNTQLIYFQAEGCR---KIKELDVTHNTQLYLLDCQ 305

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 61/330 (18%), Positives = 100/330 (30%), Gaps = 54/330 (16%)

Query: 140 EKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLE 199
           +       +          S   L++L  LD +    + +       + +L+ L  L   
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-----IEKLTGLTKLICT 72

Query: 200 G-----VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF 254
                 +DLS+             +L+ L   +  L     L V   + L +L+  +N  
Sbjct: 73  SNNITTLDLSQ-----------NTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL 118

Query: 255 NSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL 314
            + +   +     L +L+ + N L   I    ++ T L ELD   N  I      D+   
Sbjct: 119 -TKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT---KLDVTPQ 169

Query: 315 CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQ 374
             L  LD S N +          L    N  L  L+   NN+       L Q   L  L 
Sbjct: 170 TQLTTLDCSFNKITE--------LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLD 218

Query: 375 LWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE 434
              N     I   +  L+ L       N +   +  S   LS L  L          + E
Sbjct: 219 CSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTD----LLE 268

Query: 435 VHFSKLKNLKELHIAKYSLAPRLTLVFNVS 464
           +  +    L             L +  N  
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 51/295 (17%), Positives = 88/295 (29%), Gaps = 43/295 (14%)

Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQIL 169
            V     L  LD  LN          +    +L  L+ S                 L  L
Sbjct: 143 DVSHNTQLTELDCHLNK---KITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRL 196

Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
           + +T   + L+      L++   L +L+     L++   +       L  L+        
Sbjct: 197 NCDTNNITKLD------LNQNIQLTFLDCSSNKLTEIDVTP------LTQLTYFDCSVNP 244

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL-DLSANNLQGNIPDAFAN 288
           L E     V   S L  L     D         ++++    L    A   +        +
Sbjct: 245 LTELD---VSTLSKLTTLHCIQTDLLE------IDLTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348
            T L  LD     +       DL     L  L L+  +L          L    N+ L+S
Sbjct: 296 NTQLYLLDCQAAGI----TELDLSQNPKLVYLYLNNTEL--------TELDVSHNTKLKS 343

Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
           L     ++  F  +S+G++  L            ++P+     +SL      + L
Sbjct: 344 LSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 35/272 (12%)

Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQIL 169
            V   K LN L+   NN   +++   L    +L +L+ S       I      L+ L   
Sbjct: 186 DVSQNKLLNRLNCDTNNI--TKLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYF 238

Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQ--YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
           D +    + L   DV  LS+L++L     +L  +DL+               L       
Sbjct: 239 DCS---VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH-----------NTQLIYFQAEG 284

Query: 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
           C   +   ++  + + L  LD  +    + +   L    KL +L L+   L   +    +
Sbjct: 285 CRKIKELDVT--HNTQLYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELT-ELD--VS 336

Query: 288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347
           + T L+ L      +        +G +  L +   +         E +   S     S +
Sbjct: 337 HNTKLKSLSCVNAHIQ--DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

Query: 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
            LD   N +    P   G  +       W NL
Sbjct: 394 LLDQFGNPM-NIEPGDGGVYDQATNTITWENL 424

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 51/192 (26%), Positives = 70/192 (36%), Gaps = 18/192 (9%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
                 L LS N   +     L+  ++L  L+L    L   +      +  L  LDLS N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHN 87

Query: 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE---FVDRLSKCANSSLESLDLGQNNLG 357
            L    +P    +L  L  LD+S N L    +        L +     L+ L L  N L 
Sbjct: 88  QL--QSLPLLGQTLPALTVLDVSFNRL--TSLPLGAL-RGLGE-----LQELYLKGNELK 137

Query: 358 GFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLS 416
              P  L     L+ L L  N     +P  +   L +L  L L  N +  TIPK      
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 417 HLVVLDISGNPW 428
            L    + GNPW
Sbjct: 196 LLPFAFLHGNPW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 6e-17
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
            ++    + LHL    L+ F   +++ ++ L  L+L   +  + +      +  L  LDL
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDG-TLPVLGTLDL 84

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEII 332
           S N LQ ++P     + +L  LD+S N L    +P      L  L +L L GN+L   + 
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLP 140

Query: 333 EFV-DRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNL 391
             +     K     LE L L  NNL       L  LENL  L L  N    +IP+     
Sbjct: 141 PGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 392 SSLRELYLHNN 402
             L   +LH N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI-SKLAHLDLSANNLQGNIPD 284
           P C         V   +S L ++    +  +++P    ++      L LS N L      
Sbjct: 2   PIC--------EVSKVASHLEVNCDKRNL-TALPP---DLPKDTTILHLSENLLYTFSLA 49

Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344
                T L +L+L    L   ++  D G+L  L  LDLS N L   +      L      
Sbjct: 50  TLMPYTRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPA---- 101

Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNL 403
            L  LD+  N L      +L  L  L+ L L GN  + ++P  +      L +L L NN 
Sbjct: 102 -LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 404 MDGTIPKSL-GKLSHLVVLDISGN 426
           +   +P  L   L +L  L +  N
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 51/202 (25%), Positives = 72/202 (35%), Gaps = 15/202 (7%)

Query: 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGV 201
              L+LS          +    + L  L+L+    + L+ D       L  L  L+L   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLSHN 87

Query: 202 DLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQW 261
            L             LP+L+ L +    L   P  ++     L  L L  N+   ++P  
Sbjct: 88  QLQSLPLLGQT----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPG 142

Query: 262 LL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL 320
           LL    KL  L L+ NNL          + +L  L L ENSL    IPK       L   
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFA 200

Query: 321 DLSGN--DLDGEIIEFVDRLSK 340
            L GN    + EI+ F   L  
Sbjct: 201 FLHGNPWLCNCEILYFRRWLQD 222

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
                L L +N L  F   +L     L  L L        +    G L  L  L L +N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88

Query: 404 MDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
           +  ++P     L  L VLD+S N    L        L  L+EL+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELY 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.9 bits (212), Expect = 4e-18
 Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 28/250 (11%)

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
             +     +L      S+   D    + L+S+  +     D+       VQ    LP+++
Sbjct: 19  AFAETIKDNLK---KKSVT--DAVTQNELNSIDQIIANNSDIKS-----VQGIQYLPNVT 68

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
           +L L    L +  PL+  N  +L +L L  N         L ++ KL  L L  N +  +
Sbjct: 69  KLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-D 123

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
           I +   ++  L  L L  N +        L  L  L  L L  N      I  +  L+  
Sbjct: 124 I-NGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQ-----ISDIVPLAGL 174

Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401
               L++L L +N++      +L  L+NL +L+L+             NL     +   +
Sbjct: 175 TK--LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 402 NLMDGTIPKS 411
             +      S
Sbjct: 231 GSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 2e-15
 Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 30/270 (11%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
                   +L   +   +        L  +  +  + +    ++      L ++  L L 
Sbjct: 19  AFAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL- 72

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
               +  +  D++ L+ L +L +L L+   +       + +   L  L  L L   G+ +
Sbjct: 73  ----NGNKLTDIKPLTNLKNLGWLFLDENKIKD-----LSSLKDLKKLKSLSLEHNGISD 123

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292
              L   +   L  L L +N         L  ++KL  L L  N +  +I    A +T L
Sbjct: 124 INGLV--HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL 177

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
           + L LS+N +      + L  L NL  L+L   +   + I     L         ++   
Sbjct: 178 QNLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV-----PNTVKNT 229

Query: 353 QNNLGGFLPNS-LGQLENLKILQLWGNLFR 381
             +L      S  G  E   +         
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 20/195 (10%)

Query: 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSS 165
           +I P + +LK+L +L L  N      + + L  L+KL+ L+L     + +I     +L  
Sbjct: 79  DIKP-LTNLKNLGWLFLDENKI--KDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQ 132

Query: 166 LQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
           L+ L L     + +       LSRL+ L  L+LE   +S      +     L  L  L+L
Sbjct: 133 LESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISD-----IVPLAGLTKLQNLYL 182

Query: 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
               + +   L+     +L  L+L S +  +       N+     +  +  +L    P+ 
Sbjct: 183 SKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEI 238

Query: 286 FANMTSLRELDLSEN 300
            ++     + ++  +
Sbjct: 239 ISDDGDYEKPNVKWH 253

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 5e-18
 Identities = 64/352 (18%), Positives = 113/352 (32%), Gaps = 43/352 (12%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLS----GASFAGNIPPSFGNLSSLQILD 170
             +  LD+       +R    L  L++ + + L       +   +I  +     +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 171 LNTFYYSSLESDDVEWLSRL-----SSLQYLNLEGVDLSKAG-SSWVQATNMLPSLSELH 224
           L     + L    V  + +        +Q L+L+   L+ AG          LP+L ELH
Sbjct: 63  L---RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 225 LPAC-----GLFEFPPLSVVNFSSLLFLDLSSNDFNS----SIPQWLLNISKLAHLDLSA 275
           L        GL       +     L  L L     ++     +   L        L +S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 276 NNLQG----NIPDAFA-NMTSLRELDLSENSL--IGGQ-IPKDLGSLCNLWDLDLSGNDL 327
           N++       +      +   L  L L    +     + +   + S  +L +L L  N L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLG----GFLPNSLGQLENLKILQLWGNLFRGS 383
               +  +       +S L +L + +  +     G L   L   E+LK L L GN     
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 384 IPESIGNL-----SSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISGN 426
               +          L  L++ +              L +   L+ L IS N
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 67/361 (18%), Positives = 107/361 (29%), Gaps = 69/361 (19%)

Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLE----KLRYLNLSGASF----AGNIPP 158
           +S ++  L  L  L LS N    + +      L     +L  L L   S        +  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRL-----SSLQYLNLEGVDLSKAGSSWVQA 213
                   + L +     + +    V  L +        L+ L LE   ++         
Sbjct: 165 VLRAKPDFKELTV---SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---- 217

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSS-----IPQWLLNISKL 268
                 L  + + +              +SL  L L SN           P  L   S+L
Sbjct: 218 -----DLCGI-VASK-------------ASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 269 AHLDLSANNLQ----GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL-----CNLWD 319
             L +    +     G++        SL+EL L+ N  +G +  + L        C L  
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLES 317

Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG----FLPNSLGQ-LENLKILQ 374
           L +               +    N  L  L +  N L       L   LGQ    L++L 
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 375 LWGNLFR----GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKL-----SHLVVLDISG 425
           L           S+  ++    SLREL L NN +       L +        L  L +  
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 426 N 426
            
Sbjct: 437 I 437

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 49/258 (18%), Positives = 82/258 (31%), Gaps = 43/258 (16%)

Query: 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLS 250
             +Q L+++  +LS A   W +   +L     + L  CGL         + SS L     
Sbjct: 3   LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGL---TEARCKDISSAL----R 53

Query: 251 SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANM-----TSLRELDLSENSL--I 303
            N               LA L+L +N L                  +++L L    L   
Sbjct: 54  VN-------------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 304 GGQ-IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG----G 358
           G   +   L +L  L +L LS N L    ++ +          LE L L   +L      
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 359 FLPNSLGQLENLKILQLWGNLFRGSIPESIG-----NLSSLRELYLHNNLMD----GTIP 409
            L + L    + K L +  N    +    +      +   L  L L +  +       + 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 410 KSLGKLSHLVVLDISGNP 427
             +   + L  L +  N 
Sbjct: 221 GIVASKASLRELALGSNK 238

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 14/183 (7%)

Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
           S                    A M SL  + L+  ++        +    N+ DL ++  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNI 76

Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP 385
                    +  LS      LE L +   ++      +L  L +L +L +  +    SI 
Sbjct: 77  HA--TNYNPISGLSN-----LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 386 ESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKE 445
             I  L  +  + L  N     I   L  L  L  L+I  +   G+           L +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD---GVHDYRGIEDFPKLNQ 185

Query: 446 LHI 448
           L+ 
Sbjct: 186 LYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 28/188 (14%), Positives = 65/188 (34%), Gaps = 16/188 (8%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
            F + L   L  +   ++I +    ++ L ++ L+  N+  ++        ++++L ++ 
Sbjct: 21  TFKAYLNGLLGQSS-TANITE--AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF 359
                      +  L NL  L + G D+  + I  +  L+      L  LD+  +     
Sbjct: 76  IHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-----LTLLDISHSAHDDS 127

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419
           +   +  L  +  + L  N     I   +  L  L+ L +  + +       +     L 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLN 184

Query: 420 VLDISGNP 427
            L      
Sbjct: 185 QLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 13/168 (7%)

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
            ++    +SL ++ L++ +        +     +  L ++  +      +  + +++L  
Sbjct: 37  NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLER 92

Query: 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354
           L +     +      +L  L +L  LD+S +  D  I+  ++ L K     + S+DL  N
Sbjct: 93  LRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK-----VNSIDLSYN 146

Query: 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
                +   L  L  LK L +  +         I +   L +LY  + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 16/171 (9%)

Query: 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFL 247
           ++++SL Y+ L  ++++      +       ++ +L +       + P+S    S+L  L
Sbjct: 41  AQMNSLTYITLANINVTD-----LTGIEYAHNIKDLTINNIHATNYNPIS--GLSNLERL 93

Query: 248 DLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQI 307
            +   D  S     L  ++ L  LD+S +    +I      +  +  +DLS N  I    
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TD 151

Query: 308 PKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG 358
              L +L  L  L++  + +       ++   K     L  L      +GG
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPK-----LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
             ++  L ++  +       N +  L  L  L + G     +  P+   L+SL +LD++ 
Sbjct: 65  AHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS- 120

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
             +S+ +   +  ++ L  +  ++L            +     LP L  L++   G+ ++
Sbjct: 121 --HSAHDDSILTKINTLPKVNSIDLSYNGAITD----IMPLKTLPELKSLNIQFDGVHDY 174

Query: 234 PPLSVVNFSSLLFLDLSSNDFNS 256
             +   +F  L  L   S     
Sbjct: 175 RGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 38/191 (19%)

Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQIL 169
           +   +  L Y+ L+  N   + +   +     ++ L ++      N  P    LS+L+ L
Sbjct: 39  TEAQMNSLTYITLANINV--TDLTG-IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERL 93

Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
            +       + SD +  LS L+SL  L++       +          L  ++ L      
Sbjct: 94  RI---MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI---------LTKINTL------ 135

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANM 289
                         +  +DLS N   + I   L  + +L  L++  + +  +      + 
Sbjct: 136 ------------PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DY-RGIEDF 180

Query: 290 TSLRELDLSEN 300
             L +L     
Sbjct: 181 PKLNQLYAFSQ 191

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 35/238 (14%)

Query: 215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS 274
           ++ PS   L L    L   P  +  N  ++  + +S +     +                
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE--------------- 72

Query: 275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIE 333
                     +F N++ +  +++     +   I  D L  L  L  L +        +  
Sbjct: 73  --------SHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKFLGIFNT----GLKM 119

Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLP-NSLGQLEN-LKILQLWGNLFRGSIPESIGNL 391
           F D     +      L++  N     +P N+   L N    L+L+ N F  S+     N 
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178

Query: 392 SSLRELYLHNNLMDGTIPKSL--GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
           + L  +YL+ N     I K    G  S   +LD+S    +  +       LK L   +
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 43/261 (16%)

Query: 121 DLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTFYYSSL 179
           D  +      RIP+   S    + L L        IP  +F NL ++  + ++     +L
Sbjct: 15  DFRVTCKDIQRIPSLPPST---QTLKLIETHLR-TIPSHAFSNLPNISRIYVS--IDVTL 68

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
           +  +      LS + ++ +              A   LP L  L +   GL  FP L+ V
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDP--DALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 240 NFSSLLF-LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS-LRELDL 297
             + + F L+++ N + +SIP                        +AF  + +    L L
Sbjct: 127 YSTDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLTLKL 163

Query: 298 SENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE--FVDRLSKCANSSLESLDLGQNN 355
             N      +     +   L  + L+ N     I +  F         S    LD+ Q +
Sbjct: 164 YNNGF--TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-----VYSGPSLLDVSQTS 216

Query: 356 LGGFLPNSLGQLENLKILQLW 376
           +       L  L+ L     W
Sbjct: 217 VTALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 37/195 (18%)

Query: 114 LKHLNYLDLSLNNFRGSRIPN--FLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILD 170
           L +++ + +S++     ++ +  F   L K+ ++ +        I P     L  L+ L 
Sbjct: 54  LPNISRIYVSIDV-TLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 171 LNTFYYSSLES-DDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
           +   + + L+   D+  +        L +                  + S+         
Sbjct: 112 I---FNTGLKMFPDLTKVYSTDIFFILEI-------------TDNPYMTSIPV------N 149

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFAN 288
            F+         +  L L L +N F +S+  +  N +KL  + L+ N     I  DAF  
Sbjct: 150 AFQGLC------NETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 289 MTS-LRELDLSENSL 302
           + S    LD+S+ S+
Sbjct: 203 VYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 36/190 (18%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP--SFGNLSSLQILD 170
           +L  + ++++          P+ L  L  L++L +         P      +     IL+
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 171 L-NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
           + +  Y +S+  +  + L        L L                N   S+         
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNE--TLTLKLYN--------------NGFTSVQG------Y 174

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN--ISKLAHLDLSANNLQGNIPDAFA 287
            F        N + L  + L+ N + + I +       S  + LD+S  ++         
Sbjct: 175 AF--------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

Query: 288 NMTSLRELDL 297
           ++  L   + 
Sbjct: 227 HLKELIARNT 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 8e-17
 Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 14/195 (7%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS 298
           +F  L  LDLS  +   +I      ++S L+ L L+ N +Q     AF+ ++SL++L   
Sbjct: 50  SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 299 ENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFV-DRLSKCANSSLESLDLGQNNL 356
           E +L    +     G L  L +L+++ N +    +      L+     +LE LDL  N +
Sbjct: 109 ETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKI 161

Query: 357 GGFLPNSLGQLENLKILQLWGNLFR---GSIPESIGNLSSLRELYLHNNLMDGTIPKSLG 413
                  L  L  + +L L  +L       I         L+EL L  N +         
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 414 KLSHLVVLDISGNPW 428
           +L+ L  + +  NPW
Sbjct: 222 RLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 40/249 (16%)

Query: 155 NIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQAT 214
           N+P       S + LDL+      L S           LQ L+L                
Sbjct: 25  NLP------FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSR-------------- 61

Query: 215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS 274
             + ++ +      G ++       + S L  L L+ N   S        +S L  L   
Sbjct: 62  CEIQTIED------GAYQ-------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEF 334
             NL         ++ +L+EL+++ N +   ++P+   +L NL  LDLS N +       
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 335 VDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSS 393
           +  L +    +L  LDL  N +    P +  ++  LK L L  N  + S+P+ I   L+S
Sbjct: 169 LRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 394 LRELYLHNN 402
           L++++LH N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
             L+ LDL +  +      +   L +L  L L GN  + S+       LSSL++L     
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET 110

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
            +       +G L  L  L+++ N         +FS L NL+ L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 9e-17
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 13/238 (5%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLD 272
           +++  +  EL      L      +   F  L  +++S ND    I      N+ KL  + 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 273 LS-ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGE 330
           +  ANNL    P+AF N+ +L+ L +S   +    +P            LD+  N     
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNI---N 140

Query: 331 IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN 390
           I           +     L L +N +     ++    +  ++     N       +    
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 391 LSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            S    L +    +       L  L  L          +         KL  L E  +
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 44/265 (16%)

Query: 142 LRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG 200
              L          I   +F     L+ ++++      LE  + +  S L  L  + +E 
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEIS--QNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 201 VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260
            +     +   +A   LP+L  L +   G+   P +  ++    + LD+  N    +I +
Sbjct: 89  ANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 261 WLLN--ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNL 317
                   +   L L+ N +Q  I ++  N T L EL+LS+N+ +  ++P D        
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGP 204

Query: 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377
             LD+S   +                 SL                 L  L+ L+    + 
Sbjct: 205 VILDISRTRI----------------HSLP-------------SYGLENLKKLRARSTYN 235

Query: 378 NLFRGSIPESIGNLSSLRELYLHNN 402
                 +P ++  L +L E  L   
Sbjct: 236 L---KKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 42/222 (18%), Positives = 72/222 (32%), Gaps = 34/222 (15%)

Query: 106 EISPSVLD-LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FGNL 163
            I          L  +++S N+       +   +L KL  + +  A+    I P  F NL
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103

Query: 164 SSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG---------------------VD 202
            +LQ L +     + ++               L+++                      + 
Sbjct: 104 PNLQYLLI---SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 203 LSKAGSSWVQ--ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260
           L+K G   +   A N              L E P       S  + LD+S      S+P 
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPS 219

Query: 261 WLL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS 301
           + L N+ KL        NL+  +P     + +L E  L+  S
Sbjct: 220 YGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS 257

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 52/191 (27%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 247 LDLSSNDFNSSIPQWLLNISK-LAHLDLSANNLQGNIPD-AFANMTSLRELDLSENSLIG 304
           L  S      ++PQ   ++    A LDLS NNL     +     +T+L  L LS N L  
Sbjct: 23  LSCSKQQL-PNVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-- 76

Query: 305 GQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS 363
             I  +    + NL  LDLS N L          L       LE L L  N++     N+
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA-----LEVLLLYNNHIVVVDRNA 131

Query: 364 LGQLENLKILQLWGNLFRGSIPE----SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419
              +  L+ L L  N      P         L  L  L L +N +       L KL   V
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 420 V--LDISGNPW 428
              L +  NP 
Sbjct: 191 KNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLS 250
           S    L+L   +LS+  + W      L +L  L L    L      + V   +L +LDLS
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTR--LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 251 SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL--IGGQIP 308
           SN  ++       ++  L  L L  N++     +AF +M  L++L LS+N +     ++ 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 309 KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNL 356
           KD   L  L  LDLS N L    +  + +L          L L  N L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA---WVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 31/187 (16%)

Query: 119 YLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTFYYS 177
            LDLS NN    R       L  L  L LS       I   +F  + +L+ LDL+    +
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS---SN 98

Query: 178 SLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237
            L + D    S L +L+ L L    +     +   A   +  L +L+L    +  FP   
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE--L 295
           + + + L                      KL  LDLS+N L+         + +  +  L
Sbjct: 156 IKDGNKL---------------------PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 296 DLSENSL 302
            L  N L
Sbjct: 195 YLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 344 SSLESLDLGQNNLGGFLPN-SLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHN 401
           S    LDL  NNL       +  +L NL  L L  N     I       + +LR L L +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
           N +          L  L VL +  N  I +V    F  +  L++L+
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLY 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 33/287 (11%)

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
            L++   +             D    + L  +  L+  G  ++      ++    L +L 
Sbjct: 17  ALANAIKIAA-----GKSNVTDTVTQADLDGITTLSAFGTGVTT-----IEGVQYLNNLI 66

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
            L L    + +  PL   N + +  L+LS N   +     +  +  +  LDL++  +   
Sbjct: 67  GLELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV 122

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
            P   A +++L+ L L  N +    I   L  L NL  L +    +    +  +  LSK 
Sbjct: 123 TP--LAGLSNLQVLYLDLNQIT--NIS-PLAGLTNLQYLSIGNAQV--SDLTPLANLSK- 174

Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401
               L +L    N +    P  L  L NL  + L  N    S    + N S+L  + L N
Sbjct: 175 ----LTTLKADDNKISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTN 226

Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
             +     + +   ++LVV ++   P    +     S        ++
Sbjct: 227 QTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 35/295 (11%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
           L +   +    +N            L+ +  L+  G      I      L++L  L+L  
Sbjct: 18  LANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              + L       L  L+ +  L L G  L       V A   L S+  L L +  + + 
Sbjct: 73  NQITDLAP-----LKNLTKITELELSGNPLKN-----VSAIAGLQSIKTLDLTSTQITDV 122

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
            PL+    S+L  L L  N   +  P  L  ++ L +L +    +  ++    AN++ L 
Sbjct: 123 TPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DL-TPLANLSKLT 176

Query: 294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353
            L   +N +    I   L SL NL ++ L  N +    +  +   S      L  + L  
Sbjct: 177 TLKADDNKIS--DIS-PLASLPNLIEVHLKNNQISD--VSPLANTSN-----LFIVTLTN 226

Query: 354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSI-PESIGNLSSLRELYLHNNLMDGT 407
             +       +    NL +  +        I P +I +  +     L  NL    
Sbjct: 227 QTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            +    LDL SN  +S   +    ++KL  L L+ N LQ      F  + +L  L +++N
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 301 SLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIE---FVDRLSKCANSSLESLDLGQNNL 356
            L    +P  +   L NL +L L  N L  + +    F D L+K     L  L LG N L
Sbjct: 96  KLQ--ALPIGVFDQLVNLAELRLDRNQL--KSLPPRVF-DSLTK-----LTYLSLGYNEL 145

Query: 357 GGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKL 415
                    +L +LK L+L+ N  +  +PE     L+ L+ L L NN +      +   L
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 416 SHLVVLDISGNPW 428
             L +L +  NPW
Sbjct: 205 EKLKMLQLQENPW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 14/167 (8%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLN-ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS 298
             + L  L L+ N    ++P  +   +  L  L ++ N LQ      F  + +L EL L 
Sbjct: 59  RLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

Query: 299 ENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFV-DRLSKCANSSLESLDLGQNNL 356
            N L    +P  +  SL  L  L L  N+L   + + V D+L+      L+ L L  N L
Sbjct: 118 RNQL--KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS-----LKELRLYNNQL 169

Query: 357 GGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
                 +  +L  LK L+L  N  +  +PE    +L  L+ L L  N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDG 329
           LDL +N L      AF  +T LR L L++N L    +P  +   L NL  L ++ N L  
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI- 388
             I   D+L       L  L L +N L    P     L  L  L L  N  + S+P+ + 
Sbjct: 100 LPIGVFDQLVN-----LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 389 GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
             L+SL+EL L+NN +      +  KL+ L  L +  N  +  V E  F  L+ LK L 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQ 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 44/217 (20%)

Query: 142 LRYLNLSGASFAGNIPPS-FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG 200
            + L+L     + ++P   F  L+ L++L LN     +L +        L +L+ L +  
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI---FKELKNLETLWVTD 94

Query: 201 VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260
                         N L +     LP  G+F+          +L  L L  N    S+P 
Sbjct: 95  --------------NKLQA-----LPI-GVFDQL-------VNLAELRLDRNQL-KSLPP 126

Query: 261 WLL-NISKLAHLDLSANNLQGNIPD-AFANMTSLRELDLSENSLIGGQIPKDL-GSLCNL 317
            +  +++KL +L L  N LQ ++P   F  +TSL+EL L  N L   ++P+     L  L
Sbjct: 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTEL 183

Query: 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354
             L L  N L        D L       L+ L L +N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSL-----EKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 52/327 (15%), Positives = 97/327 (29%), Gaps = 66/327 (20%)

Query: 106 EISPSVLDLKHLNYLDLSLNNF--RGSR-IPNFLGSLEKLRYLNLS----------GASF 152
            +   +L+   +  + LS N      +R +   + S + L     S              
Sbjct: 23  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 82

Query: 153 AGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL----SSLQYLNLEGVDLSKAGS 208
              +  +      L  + L+    ++      E L       + L++L L    L     
Sbjct: 83  LRLLLQALLKCPKLHTVRLS---DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA- 138

Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN----SSIPQWLLN 264
                  +  +L EL +              N   L  +    N           +   +
Sbjct: 139 ----GAKIARALQELAVNK---------KAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 265 ISKLAHLDLSANNL-----QGNIPDAFANMTSLRELDLSENSL--IGGQ-IPKDLGSLCN 316
              L  + +  N +     +  + +  A    L+ LDL +N+   +G   +   L S  N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 317 LWDLDLSGNDLDGE-IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL 375
           L +L L+   L        VD  SK  N  L++L L  N +      +L  +  +     
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV--ID---- 299

Query: 376 WGNLFRGSIPESIGNLSSLRELYLHNN 402
                          +  L  L L+ N
Sbjct: 300 -------------EKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 57/325 (17%), Positives = 108/325 (33%), Gaps = 60/325 (18%)

Query: 165 SLQILDLNTFYYSSLESDDVEWLSRL----SSLQYLNLEGVDLSKAGSSWV-QATNMLPS 219
           S++   L      ++ ++D + +  +     S++ + L G  +    + W+ +       
Sbjct: 5   SIEGKSLK---LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ 279
           L                       LL              Q LL   KL  + LS N   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAFG 107

Query: 280 GN----IPDAFANMTSLRELDLSENSL--IGGQI----------PKDLGSLCNLWDLDLS 323
                 + D  +  T L  L L  N L    G             K   +   L  +   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-----GFLPNSLGQLENLKILQLWGN 378
            N L+   ++   +  + ++  L ++ + QN +        L   L   + LK+L L  N
Sbjct: 168 RNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 379 LFRG----SIPESIGNLSSLRELYLHNNLMDGT----IPKSLGKLSH--LVVLDISGNPW 428
            F      ++  ++ +  +LREL L++ L+       +  +  KL +  L  L +  N  
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE- 285

Query: 429 IG-----LVTEVHFSKLKNLKELHI 448
           I       +  V   K+ +L  L +
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLEL 310

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 38/195 (19%)

Query: 291 SLRELDLSENSL--IGGQ-IPKDLGSLCNLWDLDLSGNDL-DGEIIEFVDRLSKCANSSL 346
           S+    L  +++     + +   L    ++ ++ LSGN +         + ++      L
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS--KKDL 62

Query: 347 ESLDLGQNNLG----------GFLPNSLGQLENLKILQLWGNLFRG----SIPESIGNLS 392
           E  +      G            L  +L +   L  ++L  N F       + + +   +
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 393 SLRELYLHNN-------------LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSK 439
            L  LYLHNN             L +  + K       L  +    N  +   +   ++K
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181

Query: 440 L----KNLKELHIAK 450
                + L  + + +
Sbjct: 182 TFQSHRLLHTVKMVQ 196

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 23/230 (10%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
                + +L    + +    +    +S+  +  +++D  S     +  +  +  L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336
            L  +I    AN+ +L  L L EN +    +   L  L  L  L L  N +    I  + 
Sbjct: 79  KLT-DIKP-LANLKNLGWLFLDENKVK--DL-SSLKDLKKLKSLSLEHNGI--SDINGLV 131

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
            L +     LESL LG N +       L +L  L  L L  N     I   +  L+ L+ 
Sbjct: 132 HLPQ-----LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQN 182

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
           LYL  N +  +  ++L  L +L VL++            H S L     +
Sbjct: 183 LYLSKNHI--SDLRALAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
               ++    +L   ++   +      + S+ ++  + + +   +  + +  L N+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLF 74

Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
           L+GN L    I+ +  L       L  L L +N +     +SL  L+ LK L L  N   
Sbjct: 75  LNGNKL--TDIKPLANLKN-----LGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS 125

Query: 382 GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441
             I   + +L  L  LYL NN +  T    L +L+ L  L +  N    +   V  + L 
Sbjct: 126 -DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLT 178

Query: 442 NLKELHIA 449
            L+ L+++
Sbjct: 179 KLQNLYLS 186

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 52/272 (19%), Positives = 93/272 (34%), Gaps = 30/272 (11%)

Query: 136 LGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY 195
             +  +    NL   S    +      L+S+  +  N     S++      +  L ++  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTK 72

Query: 196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN 255
           L L G  L+      ++    L +L  L L    + +   L   +   L  L L  N  +
Sbjct: 73  LFLNGNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS 125

Query: 256 SSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC 315
                 L+++ +L  L L  N +  +I    + +T L  L L +N +        L  L 
Sbjct: 126 DING--LVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQI---SDIVPLAGLT 178

Query: 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL 375
            L +L LS N      I  +  L+   N  L+ L+L          N    L     ++ 
Sbjct: 179 KLQNLYLSKNH-----ISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 376 WGNLFRGSIPESIGNLSSLRELYLHNNLMDGT 407
                    PE I +     +  +  +L + T
Sbjct: 232 TDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 30/260 (11%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
                  +L   +            L  +  +  + +    ++      L ++  L L  
Sbjct: 23  FAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL-- 75

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              +  +  D++ L+ L +L +L L+   +       + +   L  L  L L   G+ + 
Sbjct: 76  ---NGNKLTDIKPLANLKNLGWLFLDENKVKD-----LSSLKDLKKLKSLSLEHNGISDI 127

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
             L   +   L  L L +N         L  ++KL  L L  N +  +I    A +T L+
Sbjct: 128 NGLV--HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ 181

Query: 294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353
            L LS+N +      + L  L NL  L+L   +   + I     L         ++    
Sbjct: 182 NLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNL-----VVPNTVKNTD 233

Query: 354 NNLGGFLPNS-LGQLENLKI 372
            +L      S  G  E   +
Sbjct: 234 GSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 22/226 (9%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
           L ++  L L+ N      I   L +L+ L +L L       ++     +L  L+ L L  
Sbjct: 67  LPNVTKLFLNGNKLT--DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEH 121

Query: 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF 233
              S +       L  L  L+ L L    ++      +   + L  L  L L    + + 
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQISDI 171

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
            PL+    + L  L LS N  +      L  +  L  L+L +        +  +N+    
Sbjct: 172 VPLA--GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 294 ELDLSENSLIGGQIPKDLGSLCNL---WDLDLSGNDLDGEIIEFVD 336
            +  ++ SL+  +I  D G        W L    N++     + V 
Sbjct: 228 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 273

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 18/141 (12%)

Query: 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENL 370
             +       +L    +        + L+      ++ +    +++       +  L N+
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNS-----IDQIIANNSDIKSVQG--IQYLPNV 70

Query: 371 KILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430
             L L GN     I + + NL +L  L+L  N +      SL  L  L  L +  N    
Sbjct: 71  TKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNG--- 123

Query: 431 LVTEV-HFSKLKNLKELHIAK 450
            ++++     L  L+ L++  
Sbjct: 124 -ISDINGLVHLPQLESLYLGN 143

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 58/278 (20%), Positives = 88/278 (31%), Gaps = 27/278 (9%)

Query: 63  EDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDL 122
               +W      N    V    L +  + D    +       G  S     L        
Sbjct: 282 PLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW 341

Query: 123 S-------------LNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQIL 169
                         L+  + + + + L S ++L+ L          I      L  L   
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
                Y+S+L++ D    + L  L+   L    + K              +  LHL    
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK---------MEYADVRVLHLAHKD 452

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANM 289
           L     L       +  LDLS N    ++P  L  +  L  L  S N L+ N+    AN+
Sbjct: 453 LTVLCHLE--QLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDG-VANL 507

Query: 290 TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
             L+EL L  N L      + L S   L  L+L GN L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 55/322 (17%), Positives = 101/322 (31%), Gaps = 20/322 (6%)

Query: 108 SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQ 167
              VL   H++  +  L+      +         L  ++ +  S     P      S + 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
           + DL     +         +           E V L      W + +     L    L  
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTG--SDSQKECVLLKDRPECWCRDSATDEQLFRCELSV 358

Query: 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
                     + +   L  L+  +     +I   +  +  L +   +             
Sbjct: 359 EKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-----LK 412

Query: 288 NMTSLR-ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSL 346
            +  +R        S    +         ++  L L+  DL   ++  +++L       +
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLL-----V 465

Query: 347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN-LMD 405
             LDL  N L   LP +L  L  L++LQ   N    ++   + NL  L+EL L NN L  
Sbjct: 466 THLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQ 522

Query: 406 GTIPKSLGKLSHLVVLDISGNP 427
               + L     LV+L++ GN 
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 4e-12
 Identities = 42/263 (15%), Positives = 81/263 (30%), Gaps = 18/263 (6%)

Query: 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP-ACGLFEFPPLSVVNFSSLLF 246
           +R S +   +L    L+              S S+          E           L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
            +LS    ++ +   L +  +L  L+        N       +  +R LD         Q
Sbjct: 354 CELSVE-KSTVLQSELESCKELQELEPE------NKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ 366
               L ++  +     +  D         + + K   + +  L L   +L   +   L Q
Sbjct: 407 YFSTLKAVDPMR---AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQ 461

Query: 367 LENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
           L  +  L L  N  R ++P ++  L  L  L   +N ++  +   +  L  L  L +  N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518

Query: 427 PWIGLVTEV-HFSKLKNLKELHI 448
             +     +        L  L++
Sbjct: 519 -RLQQSAAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 3e-10
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG 304
           L     ++       + +   S      +   +         A    L   +LS      
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST- 362

Query: 305 GQIPKDLGSLCNLWDLD----------------LSGNDLDGEIIEFVDRLSKCANSSLES 348
             +  +L S   L +L+                L     + E +++   L          
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTI 408
           LD  ++           +  ++++L L       ++   +  L  +  L L +N +   +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 409 PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
           P +L  L  L VL  S N    L      + L  L+EL + 
Sbjct: 479 PPALAALRCLEVLQASDNA---LENVDGVANLPRLQELLLC 516

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSG---ASFAGNIPPSFGNLSSLQILD 170
           L  + +LDLS N  R   +P  L +L  L  L  S     +  G       NL  LQ L 
Sbjct: 462 LLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELL 514

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223
           L            ++ L     L  LNL+G  L +      +   MLPS+S +
Sbjct: 515 LCNNRLQQSA--AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 52/282 (18%), Positives = 103/282 (36%), Gaps = 48/282 (17%)

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRL-----SSLQYLNLEGVDLSKAG----SSWVQ 212
               +  LDL     ++L S     L +      +S+  LNL G  L           + 
Sbjct: 20  IPHGVTSLDL---SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 213 ATNMLPSLSELHLPACGLFE------FPPLSVVNFSSLLFLDLSSNDFNSS----IPQWL 262
           A     +++ L+L    L           L+ +   ++  LDL  NDF+S       Q  
Sbjct: 77  AIP--ANVTSLNLSGNFLSYKSSDELVKTLAAIP-FTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 263 LNI-SKLAHLDLSANNLQGNIPDAFANM-----TSLRELDLSENSLIGGQIPKDLGSL-- 314
            N+ + +  L+L  N+L     D    +      ++  L+L  N+ +  +   +L     
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLA 192

Query: 315 ---CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG----FLPNSLGQL 367
               ++  LDLS N L  +    +  +     + + SL+L  N L G     L      L
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 368 ENLKILQLWGNLFRG-------SIPESIGNLSSLRELYLHNN 402
           ++L+ + L  ++ +        ++  +  N+  +  +  +  
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 26/190 (13%)

Query: 262 LLNISKLAHLDLSANNLQGNIPDAFA-----NMTSLRELDLSENSLIGGQIPKDLGSL-- 314
                 +  LDLS NNL                 S+  L+LS NS +G +   +L  +  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILA 76

Query: 315 ---CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQL---- 367
               N+  L+LSGN L  +  + + +       ++  LDLG N+      +   Q     
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 368 -ENLKILQLWGNLFRGSIPESIGNL-----SSLRELYLHNNLMDGTIPKSLGKL-----S 416
             ++  L L GN       + +  +     +++  L L  N +       L K      +
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 417 HLVVLDISGN 426
            +  LD+S N
Sbjct: 197 SVTSLDLSAN 206

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 38/279 (13%), Positives = 87/279 (31%), Gaps = 39/279 (13%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLE----KLRYLNLS----GASFAGNIPPSFGNL-SS 165
            ++  L+LS N          + +L      +  L+L      +  +     +F NL +S
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 166 LQILDLNTFYYSSLESDDVEWLSRL-----SSLQYLNLEGVDLSKAGSSWVQA--TNMLP 218
           +  L+L     + L     + L ++     +++  LNL G +L+    + +     ++  
Sbjct: 140 ITSLNLR---GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 219 SLSELHLPAC-----GLFEFPPLSVVNFSSLLFLDLSSNDFNSS----IPQWLLNISKLA 269
           S++ L L A         E   +     + ++ L+L  N  +      +     ++  L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 270 HLDLSANNLQG-------NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL----CNLW 318
            + L  + ++         +  AF N+  +  +D +   +           +        
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG 357
              L    L        +         L         L 
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSL-----CNLWDLDLSGNDLDGEIIEFVD 336
           + +  +    +  LDLS N+ +      +L         ++  L+LSGN L  +  + + 
Sbjct: 14  VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQL-----ENLKILQLWGNLFRGSIPESIGNL 391
           ++     +++ SL+L  N L     + L +        + +L L  N F           
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 392 -----SSLRELYLHNNLMDGTIPKSLGKL-----SHLVVLDISGN 426
                +S+  L L  N +       L ++     +++  L++ GN
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 35/188 (18%), Positives = 77/188 (40%), Gaps = 22/188 (11%)

Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
              ++     +L   ++   +      ++ ++  +   +++   Q    +    NL +L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELH 69

Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
           LS N +    +  +  L+K     LE L + +N L      +L  + +  + +L+ +   
Sbjct: 70  LSHNQI--SDLSPLKDLTK-----LEELSVNRNRL-----KNLNGIPSACLSRLFLDNNE 117

Query: 382 GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441
               +S+ +L +L  L + NN +       LG LS L VLD+ GN    +      ++LK
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNE---ITNTGGLTRLK 172

Query: 442 NLKELHIA 449
            +  + + 
Sbjct: 173 KVNWIDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
           L +  + +L    + +         S +   +  +++  S     +   + L  L LS N
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN 73

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL--CNLWDLDLSGNDLDGEIIEF 334
            +  ++     ++T L EL ++ N L      K+L  +    L  L L  N+     +  
Sbjct: 74  QIS-DL-SPLKDLTKLEELSVNRNRL------KNLNGIPSACLSRLFLDNNE-----LRD 120

Query: 335 VDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSL 394
            D L    N  LE L +  N L   +   LG L  L++L L GN    +    +  L  +
Sbjct: 121 TDSLIHLKN--LEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI--TNTGGLTRLKKV 174

Query: 395 RELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
             + L        + + +     L + +   +P    ++  + S   +  +  +
Sbjct: 175 NWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 136 LGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY 195
              L      NL   S       S   LS +Q  + +     SL       +   ++L+ 
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG-----MQFFTNLKE 67

Query: 196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN 255
           L+L    +S      +     L  L EL +    L     +     + L  L L +N   
Sbjct: 68  LHLSHNQISD-----LSPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNN--E 117

Query: 256 SSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC 315
                 L+++  L  L +  N L+ +I      ++ L  LDL  N +        L  L 
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEI---TNTGGLTRLK 172

Query: 316 NLWDLDLSGNDLDGEIIEFVDRL 338
            +  +DL+G     E +++   L
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 18/156 (11%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
              +L  L LS N    S +   L  L KL  L+++             NL+ +    L+
Sbjct: 61  FFTNLKELHLSHNQI--SDLSP-LKDLTKLEELSVNRNRLK--------NLNGIPSACLS 109

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
             +  + E  D + L  L +L+ L++    L       +     L  L  L L    +  
Sbjct: 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-----IVMLGFLSKLEVLDLHGNEITN 164

Query: 233 FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL 268
              L+      + ++DL+     +   ++   +   
Sbjct: 165 TGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDG 329
           + L  N ++   P AF+    LR +DLS N +   ++  D    L +L  L L GN +  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIG 389
                 + L       L+ L L  N +     ++   L NL +L L+ N  +     +  
Sbjct: 95  LPKSLFEGLFS-----LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 390 NLSSLRELYLHNN 402
            L +++ ++L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           + L  N      P       KL  +DLS N +    PDAF  + SL  L L  N +   +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI--TE 94

Query: 307 IPKDL-GSLCNLWDLDLSGNDLDGEIIEFV-DRLSKCANSSLESLDLGQNNLGGFLPNSL 364
           +PK L   L +L  L L+ N +   +       L       L  L L  N L      + 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHN-----LNLLSLYDNKLQTIAKGTF 148

Query: 365 GQLENLKILQLWGNLF 380
             L  ++ + L  N F
Sbjct: 149 SPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/208 (18%), Positives = 65/208 (31%), Gaps = 43/208 (20%)

Query: 155 NIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQAT 214
           N+P +      +  + L       +        S    L+ ++L                
Sbjct: 29  NLPET------ITEIRLEQNTIKVIPPGA---FSPYKKLRRIDLSN-------------- 65

Query: 215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDL 273
           N +  L+         F+          SL  L L  N   + +P+ L   +  L  L L
Sbjct: 66  NQISELAP------DAFQ-------GLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLL 111

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGN--DLDGE 330
           +AN +     DAF ++ +L  L L +N L    I K     L  +  + L+ N    D  
Sbjct: 112 NANKINCLRVDAFQDLHNLNLLSLYDNKL--QTIAKGTFSPLRAIQTMHLAQNPFICDCH 169

Query: 331 IIEFVDRLSKCANSSLESLDLGQNNLGG 358
           +    D L      +  +       L  
Sbjct: 170 LKWLADYLHTNPIETSGARCTSPRRLAN 197

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
            ++  + L QN +    P +    + L+ + L  N     +       L SL  L L+ N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            +          L  L +L ++ N    L  +  F  L NL  L +
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSL 135

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 51/355 (14%), Positives = 107/355 (30%), Gaps = 46/355 (12%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGN--IPPSFGNLSSLQIL 169
           +  + +   DL L+    +R  +       L  L L   S      +     +   ++ L
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADD-------LETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 170 DLNTFYYSSLESDDVEWLSRLS----SLQYLNLEGVDLSKAGSSWVQA-TNMLPSLSELH 224
            +     SS    D +WL  L+    SL+ LN    + +K     ++       SL  + 
Sbjct: 170 LME---ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 225 LPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN--I 282
           +    + E         ++L      S + +  +P+  +N+     L     +  G   +
Sbjct: 227 VGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 283 PDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342
           P  F     +R+LDL    L        +    NL  L+      D  +        +  
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ-- 343

Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
              L+ L + +      + +  G +    ++ L                  L  + ++ +
Sbjct: 344 ---LKRLRIERGADEQGMEDEEGLVSQRGLIAL------------AQGCQELEYMAVYVS 388

Query: 403 LMD----GTIPKSLGKLSHLVVLDISGNPWIGLVT-----EVHFSKLKNLKELHI 448
            +      +I   L  L    ++ +     I  +             K L+    
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 9e-08
 Identities = 56/392 (14%), Positives = 124/392 (31%), Gaps = 57/392 (14%)

Query: 115 KHLNYLDLSL-NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFG----NLSSLQIL 169
             L  L L   + F    + + +    K++ L +  +SF+            + +SL++L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 170 DLNTFYYSSLESDDVEWL-SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
           +     ++ +   D+E +     SL  + +   ++ +    +  A N L       L   
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN-LEEFCGGSLNED 256

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN-IPDAFA 287
                  +++V    L  L LS     + +P      +++  LDL    L+         
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 288 NMTSLRELDLSENSLIGGQIPKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCA---- 342
              +L  L+    ++IG +  + L   C  L  L +     +  + +    +S+      
Sbjct: 316 KCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 343 ---NSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGSIPESIG------ 389
                 LE + +  +++       +   L  L + +++ L        +P   G      
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 390 NLSSLRELYL----------------------------HNNLMDGTIPKSLGKLSHLVVL 421
               LR                                +    D  + +      +L  L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 422 DISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
           ++ G  +         +KL +L+ L +  Y  
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           LDL S    +        ++KL  L+L  N LQ      F ++T L  L L+ N L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--AS 97

Query: 307 IPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
           +P  +   L  L  L L GN L        DRL+K     L+ L L  N L      +  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----LKELRLNTNQLQSIPAGAFD 152

Query: 366 QLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
           +L NL+ L L  N  + S+P      L  L+ + L  N
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 50/188 (26%), Positives = 73/188 (38%), Gaps = 39/188 (20%)

Query: 145 LNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLS 204
           L+L     A     +F  L+ L  L+L+     +L +        L+ L  L L      
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV---FDDLTELGTLGLA----- 91

Query: 205 KAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL- 263
                     N L SL        G+F+       + + L  L L  N    S+P  +  
Sbjct: 92  ---------NNQLASLPL------GVFD-------HLTQLDKLYLGGNQL-KSLPSGVFD 128

Query: 264 NISKLAHLDLSANNLQGNIPD-AFANMTSLRELDLSENSL--IGGQIPKDLGSLCNLWDL 320
            ++KL  L L+ N LQ +IP  AF  +T+L+ L LS N L  +       LG L  +   
Sbjct: 129 RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT-- 185

Query: 321 DLSGNDLD 328
            L GN  D
Sbjct: 186 -LFGNQFD 192

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 33/158 (20%)

Query: 247 LDLSSNDFNSSIPQWLL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGG 305
           L L++N+F       +   + +L  ++ S N +      AF   + + E+ L+ N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95

Query: 306 QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
            +   +                      F   L       L++L L  N +     +S  
Sbjct: 96  -VQHKM----------------------F-KGLES-----LKTLMLRSNRITCVGNDSFI 126

Query: 366 QLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
            L ++++L L+ N    ++       L SL  L L  N
Sbjct: 127 GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 281 NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV-DRLS 339
           +IP          EL L+ N     +       L  L  ++ S N +  +I E   +  S
Sbjct: 29  HIP------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELY 398
                 +  + L  N L          LE+LK L L  N     +       LSS+R L 
Sbjct: 82  G-----VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

Query: 399 LHNNLMDGTIPK----SLGKLSHLVVLDISGNPW 428
           L++N +  T+      +L  LS    L++  NP+
Sbjct: 136 LYDNQI-TTVAPGAFDTLHSLST---LNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 344 SSLESLDLGQNNLGGFLPNSL-GQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHN 401
                L L  N         +  +L  L+ +    N     I E      S + E+ L +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           N ++    K    L  L  L +  N    +  +  F  L +++ L +
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSL 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 56/182 (30%)

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTFYYSS 178
           L L+ N F           L +LR +N S      +I   +F   S +  + L     + 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL---TSNR 92

Query: 179 LESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSV 238
           LE+   +    L SL+ L L                N +  +          F       
Sbjct: 93  LENVQHKMFKGLESLKTLMLRS--------------NRITCVGN------DSFI------ 126

Query: 239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS 298
                                     +S +  L L  N +    P AF  + SL  L+L 
Sbjct: 127 -------------------------GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161

Query: 299 EN 300
            N
Sbjct: 162 AN 163

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 46/327 (14%), Positives = 102/327 (31%), Gaps = 30/327 (9%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDL 171
            +++      + + N         +    K+R + L G     +         +L     
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD--------FNLVPDGW 89

Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
             + Y  +E+      S  + L+ + L+ + ++      +       +   L L +C  F
Sbjct: 90  GGYVYPWIEA----MSSSYTWLEEIRLKRMVVTDDCLELI--AKSFKNFKVLVLSSCEGF 143

Query: 232 EFPPLSVV--NFSSLLFLDLSSNDFNSSIPQWLLNISK----LAHLDLSANNLQGNIPDA 285
               L+ +     +L  LDL  +D +     WL +       L  L++S   L   +  +
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFS 201

Query: 286 -----FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340
                     +L+ L L+    +   +   L     L +L   G   +     +      
Sbjct: 202 ALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 341 CAN-SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG-NLFRGSIPESIGNLSSLRELY 398
            +    L  L    + +  +LP        L  L L    +    + + +     L+ L+
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISG 425
           + + + D  +         L  L +  
Sbjct: 321 VLDYIEDAGLEVLASTCKDLRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 62/396 (15%), Positives = 122/396 (30%), Gaps = 62/396 (15%)

Query: 114 LKHLNYLDLS-LNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS----SLQI 168
            K+   L LS    F    +     +   L+ L+L  +           +      SL  
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 169 LDLNTFYYSSLESDDVEWL-SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
           L+++    S +    +E L +R  +L+ L L      +  ++ +Q     P L EL    
Sbjct: 189 LNIS-CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGG 244

Query: 228 C------GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN 281
                   ++    +++     L  L    +   + +P      S+L  L+LS   +Q  
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 282 -IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC-NLWDLDLSGNDL----------DG 329
            +         L+ L +     I     + L S C +L +L +  ++           + 
Sbjct: 305 DLVKLLCQCPKLQRLWVL--DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362

Query: 330 EIIEFVDR-------LSKCAN-------------SSLESLDLGQNNLGGFLPNSLGQL-- 367
            ++            L  C                ++    L           +L  L  
Sbjct: 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 368 ---------ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN-NLMDGTIPKSLGKLSH 417
                    ++L+ L L G L              +  L +      D  +   L     
Sbjct: 423 GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482

Query: 418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453
           L  L+I   P+       + SKL+ ++ L ++  S+
Sbjct: 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 54/368 (14%), Positives = 102/368 (27%), Gaps = 39/368 (10%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGN--IPPSFGNLSSLQILDL 171
              L  + L         +     S +  + L LS         +        +L+ LDL
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 172 NTFYYSSLESDDVEWLSR-LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL 230
                  +    +       +SL  LN+  +    + S+  +     P+L  L L     
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223

Query: 231 FEFPPLSVVNFSSLLFLDLSS------NDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD 284
            E     +     L  L           D  S +   L    +L  L    + +   +P 
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344
            ++  + L  L+LS  ++    + K L     L  L +     D  +             
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD---- 339

Query: 345 SLESLDLGQNNLGGFLPNS----------LGQLENLKILQLWGNLFRGSIPESIG-NLSS 393
            L  L +  +      PN                 L+ +  +      +   +I  N  +
Sbjct: 340 -LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 394 LREL-----------YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSK-LK 441
           +              YL    +D      +     L  L +SG   +      +     K
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAK 456

Query: 442 NLKELHIA 449
            ++ L +A
Sbjct: 457 KMEMLSVA 464

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347
             + ++EL L  +    G++         L  L           +  +  L K     L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-----LTSIANLPKLNK--LK 67

Query: 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPESIGNLSSLRELYLHNN 402
            L+L  N + G L     +  NL  L L GN  +  S  E +  L +L+ L L N 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 338 LSKCANSSLESLDL-GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
           L     S ++ L L    +  G L     + E L+ L         SI  ++  L+ L++
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKK 68

Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV-HFSKLKNLKELHI 448
           L L +N + G +     K  +L  L++SGN  I  ++ +    KL+NLK L +
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 264 NISKLAHLDLSAN-NLQGNIPDAFANMTSLRELDLSENSL--IGGQIPKDLGSLCNLWDL 320
             S +  L L  + + +G +         L  L      L  I       L  L  L  L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKL 69

Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL-PNSLGQLENLKILQLWGN 378
           +LS N + G +    ++       +L  L+L  N +        L +LENLK L L+  
Sbjct: 70  ELSDNRVSGGLEVLAEKC-----PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
            F  L FL   +    +SI   L  ++KL  L+LS N + G +        +L  L+LS 
Sbjct: 40  EFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGN 325
           N +      + L  L NL  LDL   
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNC 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 286 FANMTSLRELDLSENSLIGG-----QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340
           F    S+   +  +  L G      ++   L +L     L LS N++  E I  +  +  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMEN 71

Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
                L  L LG+N +   + N     + L+ L +  N    S+   I  L +LR LY+ 
Sbjct: 72  -----LRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMS 123

Query: 401 NN-LMDGTIPKSLGKLSHLVVLDISGNP 427
           NN + +      L  L  L  L ++GNP
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNP 151

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 16/205 (7%)

Query: 201 VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260
            +L K   +     N L S+ ++      +     +      ++ +L L  N     I  
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKL-HDISA 80

Query: 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWD 319
            L  ++ L +L L+ N LQ      F  +T+L+EL L EN L    +P  +   L NL  
Sbjct: 81  -LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTY 137

Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL-GQLENLKILQLWGN 378
           L+L+ N L        D+L+      L  LDL  N L   LP  +  +L  LK L+L+ N
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTN-----LTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQN 191

Query: 379 LFRGSIPESI-GNLSSLRELYLHNN 402
             + S+P+ +   L+SL+ ++LH+N
Sbjct: 192 QLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 22/218 (10%)

Query: 88  PEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLD-LSLNNFRGSRIPNFLGSLEKLRYLN 146
            +             L+ +     +    LN +D +  NN     +      L  +RYL 
Sbjct: 15  DDAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI-QYLPNVRYLA 69

Query: 147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK- 205
           L G         +   L++L  L L     + L+S       +L++L+ L L    L   
Sbjct: 70  LGGNKLHD--ISALKELTNLTYLILT---GNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124

Query: 206 -AGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN 264
             G       + L +L+ L+L    L   P       ++L  LDLS N    S+P+ + +
Sbjct: 125 PDG-----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFD 178

Query: 265 -ISKLAHLDLSANNLQGNIPD-AFANMTSLRELDLSEN 300
            +++L  L L  N L+ ++PD  F  +TSL+ + L +N
Sbjct: 179 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 56/288 (19%), Positives = 101/288 (35%), Gaps = 34/288 (11%)

Query: 65  CCKWEGVICDNSTGKVVQLKLRS--PEIPDSFTDNGTTY-----QLEGEISPSVLDLKHL 117
           C +W  +  D S  + + L  ++  P++       G            +          +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS 177
            ++DLS +    S +   L    KL+ L+L G   +  I  +    S+L  L+L+    S
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS--GCS 153

Query: 178 SLESDDVEWL-SRLSSLQYLNLEG-VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP 235
                 ++ L S  S L  LNL    D ++         ++  ++++L+L          
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGY------- 205

Query: 236 LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS-ANNLQGNIPDAFANMTSLRE 294
                           N   S +   +     L HLDLS +  L+ +    F  +  L+ 
Sbjct: 206 --------------RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251

Query: 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342
           L LS    I  +   +LG +  L  L + G   DG +    + L    
Sbjct: 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 28/223 (12%)

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN-ISKLAHLDLSANNLQGNIPDAFAN 288
             + P     +   +  +DLS++    S    +L+  SKL +L L    L   I +  A 
Sbjct: 81  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140

Query: 289 MTSLRELDLSENSLIGGQIPKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347
            ++L  L+LS  S       + L S C  L +L+LS                 C +    
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW----------------CFD---- 180

Query: 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN--NLMD 405
                + ++   + +    +  L +     NL +  +   +    +L  L L +   L +
Sbjct: 181 ---FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237

Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
               +   +L++L  L +S    I   T +   ++  LK L +
Sbjct: 238 DCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 16/227 (7%)

Query: 178 SLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237
           S     +        +Q+++L    +  +    +   +    L  L L    L +    +
Sbjct: 80  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 238 VVNFSSLLFLDLSSNDF--NSSIPQWLLNISKLAHLDLSANNLQGN--IPDAFA-NMTSL 292
           +   S+L+ L+LS        ++   L + S+L  L+LS         +  A A    ++
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 293 RELDLSE-NSLIGGQIPKDLGSLC-NLWDLDLSG-NDLDGEIIEFVDRLSKCANSSLESL 349
            +L+LS     +       L   C NL  LDLS    L  +  +      +   + L+ L
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFQL--NYLQHL 252

Query: 350 DL-GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR 395
            L    ++       LG++  LK LQ++G +  G++      L  L+
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 19/214 (8%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           LDL+  + +  +   LL+   +A      + +   + + F+    ++ +DLS + +    
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVST 109

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ 366
           +   L     L +L L G  L   I+     L+K   S+L  L+L  +   GF   +L  
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVN---TLAKN--SNLVRLNL--SGCSGFSEFALQT 162

Query: 367 L----ENLKILQLWG--NLFRGSIPESIG-NLSSLRELYL---HNNLMDGTIPKSLGKLS 416
           L      L  L L    +     +  ++     ++ +L L     NL    +   + +  
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222

Query: 417 HLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAK 450
           +LV LD+S +  +       F +L  L+ L +++
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 24/160 (15%)

Query: 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354
           + L+   +   Q  +   +     +LDL G  +   +IE +           +++D   N
Sbjct: 2   VKLTAELIE--QAAQ-YTNAVRDRELDLRGYKI--PVIENLGA----TLDQFDAIDFSDN 52

Query: 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD--GTIPKSL 412
            +     +    L  LK L +  N            L  L EL L NN +   G +   L
Sbjct: 53  EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPL 109

Query: 413 GKLSHLVVLDISGNPWIGLVTEVH------FSKLKNLKEL 446
             L  L  L I  NP    VT           K+  ++ L
Sbjct: 110 ASLKSLTYLCILRNP----VTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 3/111 (2%)

Query: 215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS 274
                  EL L    +     L          +D S N+    +      + +L  L ++
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEI-RKLDG-FPLLRRLKTLLVN 72

Query: 275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
            N +          +  L EL L+ NSL+       L SL +L  L +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 44/248 (17%)

Query: 171 LNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE-LHLPACG 229
           L+  ++     +       LSSL+ LNL GV ++    +          ++  L      
Sbjct: 52  LDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCT---------VVAAVLGSGRHA 102

Query: 230 LFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN-ISKLAHLDLSANNLQGNIPDAFA- 287
           L E              ++L+S   + +  + LL    +   L L  N+L          
Sbjct: 103 LDE--------------VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148

Query: 288 ----NMTSLRELDLSENSL--IGGQ-IPKDLGSLCNLWDLDLSGNDLDGE-IIEFVDRLS 339
               +   +  L LS N L   G   + + L    ++  L L    L  E +     +L 
Sbjct: 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208

Query: 340 KCANSSLESLDLGQNNLGG----FLPNSLGQLENLKILQLWGNLFRGS----IPESIGNL 391
           +  N  L+ L++  N  G      L  +  +  +L++L L+ N         + +  G  
Sbjct: 209 R--NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266

Query: 392 SSLRELYL 399
                + +
Sbjct: 267 EGGARVVV 274

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 29/184 (15%)

Query: 242 SSLLFLDLSSNDFNSSIPQW-------LLNISKLAHLDLSANNLQGNIPDAFANM-TSLR 293
           SSL  L+L+         +              L  ++L++  L          +    R
Sbjct: 72  SSLRQLNLAGVRMTPV--KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 294 ELDLSENSLIGGQIPKDLGSL-----CNLWDLDLSGNDLDGEIIEFVDRLSKC--ANSSL 346
           +L L  NS +G +  KDL  L     C +  L LS N L    +     L +    N+S+
Sbjct: 130 KLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV---LMEGLAGNTSV 185

Query: 347 ESLDLGQNNLG----GFLPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELY 398
             L L    LG      L   L +   L+ L +  N    +    +  +     SL  L+
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245

Query: 399 LHNN 402
           L+ N
Sbjct: 246 LYFN 249

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 21/155 (13%)

Query: 289 MTSLRELDLSENSL--IGGQ-IPKDLGSL-CNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344
           ++SLR+L+L+   +  +    +   LGS    L +++L+   LD   +     L      
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR---TLLP-VFL 126

Query: 345 SLESLDLGQNNLGGFLPNSLGQL-----ENLKILQLWGNLFRGS----IPESIGNLSSLR 395
               L L  N+LG      L  L       +  L+L  N    +    + E +   +S+ 
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 396 ELYL-HNNLMD---GTIPKSLGKLSHLVVLDISGN 426
            L L H  L D     +   L +   L  L+++ N
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 281 NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340
           +         +L EL +     +     +DL  L  L +L +  +      + FV   + 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-----LRFVAPDAF 76

Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
                L  L+L  N L      ++  L +L+ L L GN   
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 344 SSLESLDL-GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
            +L  L +  Q +L       L  L  L+ L +  +  R   P++      L  L L  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPW 428
            ++ ++     +   L  L +SGNP 
Sbjct: 91  ALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 251 SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD-AFANMTSLRELDLSENSLIGGQIPK 309
           + D        L     L  L +       ++       +  LR L + ++ L    +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAP 73

Query: 310 D-LGSLCNLWDLDLSGNDL 327
           D       L  L+LS N L
Sbjct: 74  DAFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP-ESIGNLSSLREL 397
             C       L   ++       + L   ENL  L +        +    +  L  LR L
Sbjct: 3   DACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            +  + +    P +      L  L++S N  +  ++      L +L+EL +
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGL-SLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 217 LPSLSELHLPAC-GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA 275
             +L+EL++     L       +     L  L +  +      P       +L+ L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSL 302
           N L+         + SL+EL LS N L
Sbjct: 90  NALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNF-LGSLEKLRYLNLSGASFAGNIPP-SFGNLSSL 166
             +   ++L  L +  N      +    L  L +LR L +  +     + P +F     L
Sbjct: 25  HHLPGAENLTELYIE-NQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEG 200
             L+L+     SL    V+ L    SLQ L L G
Sbjct: 83  SRLNLSFNALESLSWKTVQGL----SLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 131 RIPNFLGSLEKLRYLNLSGASFAGNIPP-SFGNLSSLQILDLNTFYYSSLESDDVEWLSR 189
              + L   E L  L +       ++       L  L+ L +     S L     +    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV---KSGLRFVAPDAFHF 78

Query: 190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
              L  LNL    L       VQ      SL EL L
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQG----LSLQELVL 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 73/471 (15%), Positives = 151/471 (32%), Gaps = 147/471 (31%)

Query: 74  DNSTGKVVQLKLRS--PEIPDSFTDNGTTYQLEGEISPSVL---DLKHL----------N 118
           D  TG+  Q + +       D+F DN     ++ ++  S+L   ++ H+           
Sbjct: 8   DFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 119 YLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS 178
            L  +L + +   +  F+  + ++ Y  L          PS           + T  Y  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-----------MMTRMYIE 114

Query: 179 ----LESD-------DV----------EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
               L +D       +V          + L  L   + + ++G  +  +G +WV A ++ 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWV-ALDVC 171

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277
            S          +F              +L+L + +   ++ + L  +      + ++ +
Sbjct: 172 LSYKVQCKMDFKIF--------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 278 LQG-NIPDAFANMTS-LRELDLSE---NSLIGGQIPKDLGSLCNLWD------LDLSGND 326
               NI     ++ + LR L  S+   N L+   +      L N+ +       +LS   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLL---V------LLNVQNAKAWNAFNLSCKI 268

Query: 327 L----DGEIIEFVDR-----------------------LSKCANSSLESL---DLGQNNL 356
           L      ++ +F+                         L K  +   + L    L  N  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 357 -----GGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS--LRELYLHNNL---MDG 406
                   + + L   +N K +          I  S+  L     R+++  + L      
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMF--DRLSVFPPS 384

Query: 407 T-IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456
             IP  L     L ++      W  ++       +  + +LH  KYSL  +
Sbjct: 385 AHIPTIL-----LSLI------WFDVIKSD---VMVVVNKLH--KYSLVEK 419

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 17/113 (15%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           L L  N F + +P+ L N   L  +DLS N +      +F+NMT L  L LS N L    
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL--RC 92

Query: 307 IPKDL-GSLCNLWDLDLSGNDL----DGEIIEFVDRLSKCANSSLESLDLGQN 354
           IP      L +L  L L GND+    +G      + L     S+L  L +G N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEG----AFNDL-----SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
           L L GN       E            L  +DL  N +      S   +  L  L L  N 
Sbjct: 36  LYLDGNQFTLVPKEL-SNYKH-----LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 380 FRGSIPESI-GNLSSLRELYLHNNLMDGTIPK----SLGKLSHLVVLDISGNPW 428
            R  IP      L SLR L LH N +   +P+     L  LSHL    I  NP 
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLA---IGANPL 138

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 43/157 (27%), Positives = 56/157 (35%), Gaps = 33/157 (21%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           L L  N      P    ++  L  L L +N L       F ++T L  LDL  N L    
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL--TV 102

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ 366
           +P  +                      F DRL       L+ L +  N L   LP  + +
Sbjct: 103 LPSAV----------------------F-DRLVH-----LKELFMCCNKLTE-LPRGIER 133

Query: 367 LENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
           L +L  L L  N  + SIP      LSSL   YL  N
Sbjct: 134 LTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 45/163 (27%), Positives = 62/163 (38%), Gaps = 41/163 (25%)

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDG 329
           L L  N +    P  F ++ +L+EL L  N L  G +P  +  SL  L  LDL  N L  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQL-- 100

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIG 389
                         + L S          F      +L +LK L +  N     +P  I 
Sbjct: 101 --------------TVLPS--------AVF-----DRLVHLKELFMCCNKLT-ELPRGIE 132

Query: 390 NLSSLRELYLHNNLMDGTIPK----SLGKLSHLVVLDISGNPW 428
            L+ L  L L  N +  +IP      L  L+H     + GNPW
Sbjct: 133 RLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY---LFGNPW 171

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 35/160 (21%)

Query: 143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESD--DVEWLSRLSSLQYLNLEG 200
           + L L         P  F +L +L+ L L +    +L     D      L+ L  L+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-----SLTQLTVLDL-- 95

Query: 201 VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260
                        TN L  L         +F+           L  L +  N   + +P+
Sbjct: 96  ------------GTNQLTVLPS------AVFD-------RLVHLKELFMCCNKL-TELPR 129

Query: 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            +  ++ L HL L  N L+     AF  ++SL    L  N
Sbjct: 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 39/163 (23%), Positives = 53/163 (32%), Gaps = 42/163 (25%)

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
           ++REL L       G+I        NL  L L    L                 S+ +L 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL----------------ISVSNLP 68

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN-LMDGTIP 409
                          +L  LK L+L  N   G +      L +L  L L  N L D +  
Sbjct: 69  ---------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113

Query: 410 KSLGKLSHLVVLDISGNPWIGLVTEVH------FSKLKNLKEL 446
           + L KL  L  LD+        VT ++      F  L  L  L
Sbjct: 114 EPLKKLECLKSLDLFNCE----VTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 35/164 (21%), Positives = 47/164 (28%), Gaps = 35/164 (21%)

Query: 263 LNISKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
              + +  L L       G I    A   +L  L L    L       +L  L  L  L+
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLE 77

Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
           LS N      I     +      +L  L+L  N L       +  LE LK          
Sbjct: 78  LSENR-----IFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLK---------- 117

Query: 382 GSIPESIGNLSSLRELYLHNN---LMDGTIPKSLGKLSHLVVLD 422
                    L  L+ L L N     ++         L  L  LD
Sbjct: 118 --------KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
            F +L FL L +     S+   L  + KL  L+LS N + G +      + +L  L+LS 
Sbjct: 47  EFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGN 325
           N L      + L  L  L  LDL   
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 11/144 (7%)

Query: 162 NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221
             ++++ L L+    +  + + +   +   +L++L+L  V L       V     LP L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLIS-----VSNLPKLPKLK 74

Query: 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS-SIPQWLLNISKLAHLDLSAN---N 277
           +L L    +F    +      +L  L+LS N     S  + L  +  L  LDL      N
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

Query: 278 LQGNIPDAFANMTSLRELDLSENS 301
           L       F  +  L  LD  +  
Sbjct: 135 LNDYRESVFKLLPQLTYLDGYDRE 158

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 8e-07
 Identities = 39/325 (12%), Positives = 101/325 (31%), Gaps = 31/325 (9%)

Query: 22  NSVRLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCCKWEGVICDNSTGKVV 81
              ++    S     +   + + +        +    +   +   K   +  D +   V 
Sbjct: 36  GQTQVKNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVN 95

Query: 82  QLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEK 141
            +     +         T      E          +        +F G    +     ++
Sbjct: 96  LMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQE 155

Query: 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGV 201
           + ++         ++ P    +  L  L +      S+            +L+ L +   
Sbjct: 156 ISWIEQ------VDLSPVLDAMPLLNNLKIKGTNNLSIG------KKPRPNLKSLEIISG 203

Query: 202 DLSKAGSSWVQATNMLPSLSELHL--------PACGLFEFPP-LSVVNFSSLLFLDLSSN 252
            L  +    +  ++ LP+L +L L            +  F P  S   F +L +L +   
Sbjct: 204 GLPDSVVEDILGSD-LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262

Query: 253 DFNSSIPQWLLN---ISKLAHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGG 305
           +  + + +  L    + +L  +D+SA  L       + D    +  L+ +++  N  +  
Sbjct: 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321

Query: 306 QIPKDLGSLCNLWDLDLSGNDLDGE 330
           ++ K+L     +  +D+S +    +
Sbjct: 322 EMKKELQKSLPM-KIDVSDSQEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 39/297 (13%), Positives = 79/297 (26%), Gaps = 41/297 (13%)

Query: 135 FLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194
                +K     L   +    +      LS  +  +        L+   +  L +++   
Sbjct: 57  IAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGX 116

Query: 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP--PLSVVNFSSLLFLDLSSN 252
           +   EG D S      V+          L        E     +  V+ S +L      N
Sbjct: 117 W-GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175

Query: 253 DFNSSIPQWLLNISKLAHLDLSANNLQGNIPD-------AFANMTSLRELDLSENS--LI 303
           +        L +I K    +L +  +               +++ +L +L L        
Sbjct: 176 NLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG 234

Query: 304 GGQIPKDL------GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG 357
                             NL  L +   +    ++E    L       LE++D+    L 
Sbjct: 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF--LESDILPQLETMDISAGVLT 292

Query: 358 GFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK 414
                 L                     + +  +  L+ + +  N +   + K L K
Sbjct: 293 DEGARLL--------------------LDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 15/124 (12%)

Query: 281 NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV-DRLS 339
           +IP          EL L++N L         G L +L  L+L  N L   I     +  S
Sbjct: 26  DIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGAS 78

Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELY 398
                 ++ L LG+N +          L  LK L L+ N     +      +L+SL  L 
Sbjct: 79  H-----IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLN 132

Query: 399 LHNN 402
           L +N
Sbjct: 133 LASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 247 LDLSSNDFNSSIPQWLLN-ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGG 305
           L L+ N+        L   +  L  L+L  N L G  P+AF   + ++EL L EN +   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI--K 91

Query: 306 QIPKDL-GSLCNLWDLDLSGNDL 327
           +I   +   L  L  L+L  N +
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQI 114

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 34/158 (21%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           LDL +N   S        ++ L  L L  N LQ      F  +TSL  L+LS N L    
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--QS 90

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL-G 365
           +P  +                      F D+L++     L+ L L  N L   LP+ +  
Sbjct: 91  LPNGV----------------------F-DKLTQ-----LKELALNTNQLQS-LPDGVFD 121

Query: 366 QLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
           +L  LK L+L+ N  + S+P+ +   L+SL+ ++LH+N
Sbjct: 122 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSL----CNLWDLDLSGNDLDGEIIE-FVD 336
           +     N   L E++L+    I     K           +    + G   +  +     +
Sbjct: 28  LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87

Query: 337 RLSKCANSSLESLDLGQNNLGG----FLPNSLGQLENLKILQL--WGNLFRGSIPESIGN 390
            L    N++L+SL++  N + G     L  +L    +L  L++         ++   I N
Sbjct: 88  MLKV--NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145

Query: 391 L----SSLRELYLHNNLMDG 406
           +    ++L +   H      
Sbjct: 146 MLEKNTTLLKFGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 16/105 (15%)

Query: 266 SKLAHLDLSANNLQGNIPDAFANM----TSLRELDLSENSLIGGQIPKDLG-------SL 314
           + +    +        +  A A M     +L+ L++  N  I G     L        SL
Sbjct: 65  TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSL 123

Query: 315 CNLWDLDLSGNDLDGEI-IEFVDRLSKCANSSLESLDLGQNNLGG 358
             L  +D     L   + +E  + L K  N++L          G 
Sbjct: 124 IEL-RIDNQSQPLGNNVEMEIANMLEK--NTTLLKFGYHFTQQGP 165

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 276 NNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSL----CNLWDLDLSGNDL-DGE 330
            +++  I     + T L+E++++    +  +  + L        ++    L+   + D E
Sbjct: 27  TDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE 86

Query: 331 IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQ-------LENLKILQLWGNLFRGS 383
               ++ +    + SL  L++  N L   L   L +       +   K      ++    
Sbjct: 87  ARGLIELIET--SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144

Query: 384 IPESIGNL----SSLRELYLHNNLMDG 406
           +   +        SL  + +    M+ 
Sbjct: 145 VEMDMMMAIEENESLLRVGISFASMEA 171

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 32/133 (24%)

Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE 330
           L+L +N LQ      F  +T L +L LS+N +    +P  +                   
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQI--QSLPDGV------------------- 71

Query: 331 IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-G 389
              F D+L+K     L  L L +N L         +L  LK L L  N  + S+P+ I  
Sbjct: 72  ---F-DKLTK-----LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFD 121

Query: 390 NLSSLRELYLHNN 402
            L+SL++++LH N
Sbjct: 122 RLTSLQKIWLHTN 134

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)

Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNN 402
           ++ + L L  N +    P    +L  L  L L  N     +P  +   L+ L +L L++N
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88

Query: 403 LMDGTIPK----SLGKLSHLVVLDISGNPW 428
            +  +IP+    +L  L+H+    +  NPW
Sbjct: 89  QLK-SIPRGAFDNLKSLTHIW---LLNNPW 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	467
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.93
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.44
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-53  Score=450.64  Aligned_cols=415  Identities=27%  Similarity=0.354  Sum_probs=243.9

Q ss_pred             ccccccHhhHHHHHHhHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCCEEEEEcCCCCCC------------------
Q 038320           31 SIARCVQNEKEALLKIKASVTDPSGRLSSW-TGEDCCKWEGVICDNSTGKVVQLKLRSPEIP------------------   91 (467)
Q Consensus        31 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~------------------   91 (467)
                      +++.+.++|++||++||+++.||. .+++| .+.+||.|+||+|+  .++|+.+++++..+.                  
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence            334446789999999999999988 88999 57899999999998  689999999865432                  


Q ss_pred             -------------------CCcCCCCcccccccccCc--cccCCCCCCEEeCCCCCCCCCCCCccc-CCCCCCCEEEcCC
Q 038320           92 -------------------DSFTDNGTTYQLEGEISP--SVLDLKHLNYLDLSLNNFRGSRIPNFL-GSLEKLRYLNLSG  149 (467)
Q Consensus        92 -------------------~~~~~~~~~~~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L~~L~L~~  149 (467)
                                         ..+++++++|.++|.+|.  .++++++|++|++++|.+.+. .|..+ .++++|++|++++
T Consensus        82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCS
T ss_pred             cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCC
Confidence                               125677788888888887  888888888888888877665 44332 4455555555555


Q ss_pred             CcCCCCCCcc-------------------------CCCCCcCCeeeccCccCCCCCCC--------------------Ch
Q 038320          150 ASFAGNIPPS-------------------------FGNLSSLQILDLNTFYYSSLESD--------------------DV  184 (467)
Q Consensus       150 n~l~~~~p~~-------------------------l~~l~~L~~L~l~~n~~~~l~~~--------------------~~  184 (467)
                      |.+++..|..                         +.++++|++|++++|.+....+.                    ..
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence            4443322211                         13445555555555554432222                    11


Q ss_pred             hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCC-CCCcEEEccCCcCCCCcchhcc
Q 038320          185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNF-SSLLFLDLSSNDFNSSIPQWLL  263 (467)
Q Consensus       185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~  263 (467)
                      ..+.++++|++|++++|.+.+..+.     ..+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..+.
T Consensus       241 ~~l~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  315 (768)
T 3rgz_A          241 RAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG  315 (768)
T ss_dssp             HHTTTCSSCCEEECCSSCCEESCCC-----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred             HHHhcCCCCCEEECCCCcccCccCc-----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence            1234444444444444444332211     023333333333333333334333332 5555555555555555555555


Q ss_pred             CCCCCCEEeccCCccccccchh-hhCCCCCCEEeCCCCCCC---------------------------------------
Q 038320          264 NISKLAHLDLSANNLQGNIPDA-FANMTSLRELDLSENSLI---------------------------------------  303 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~---------------------------------------  303 (467)
                      ++++|+.|++++|.+.+.+|.. +.++++|++|++++|.+.                                       
T Consensus       316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  395 (768)
T 3rgz_A          316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT  395 (768)
T ss_dssp             GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred             cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence            5555555555555544444433 444444444444444330                                       


Q ss_pred             -----------CCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCE
Q 038320          304 -----------GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI  372 (467)
Q Consensus       304 -----------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  372 (467)
                                 .+.+|..+..+++|+.|++++|.+++..|..+..++     +|++|++++|.+++.+|..+..+++|++
T Consensus       396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-----CCCEEECCCCcccCcCCHHHcCCCCceE
Confidence                       123333444444555555555555544444444443     6666666666666666666666666666


Q ss_pred             EEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320          373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++| 
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N-  548 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTN-  548 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSS-
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCC-
Confidence            66666666666666666667777777777777666676666677777777777777666666 5666777777777777 


Q ss_pred             CCCCccEEEecCCC
Q 038320          453 LAPRLTLVFNVSPE  466 (467)
Q Consensus       453 i~~~~~~~g~~p~~  466 (467)
                           .+.|.+|..
T Consensus       549 -----~l~g~ip~~  557 (768)
T 3rgz_A          549 -----LFNGTIPAA  557 (768)
T ss_dssp             -----EEESBCCGG
T ss_pred             -----ccCCcCChH
Confidence                 666666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.9e-49  Score=408.00  Aligned_cols=402  Identities=19%  Similarity=0.200  Sum_probs=240.0

Q ss_pred             cccHhhHHHHHHhHhcCCCCCCC--------CCCC-CCCCCCCc---ccEEecCCCCCEEEEEcCCCCCCC---------
Q 038320           34 RCVQNEKEALLKIKASVTDPSGR--------LSSW-TGEDCCKW---EGVICDNSTGKVVQLKLRSPEIPD---------   92 (467)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~--------~~~w-~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~---------   92 (467)
                      .....|+.||.+++.++.++.+.        .++| .+.+||.|   .||+|+.. |||+.+++++..+.+         
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L  104 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL  104 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence            34467999999999998766543        2379 47889999   99999754 899999999843211         


Q ss_pred             --CcCCCCccc---------------------------------------------------------------------
Q 038320           93 --SFTDNGTTY---------------------------------------------------------------------  101 (467)
Q Consensus        93 --~~~~~~~~~---------------------------------------------------------------------  101 (467)
                        .+.++++.|                                                                     
T Consensus       105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~  184 (636)
T 4eco_A          105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK  184 (636)
T ss_dssp             TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred             ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence              122222222                                                                     


Q ss_pred             ---------ccccccCccccCCCCCCEEeCCCCCCCCC----------------CCCcccC--CCCCCCEEEcCCCcCCC
Q 038320          102 ---------QLEGEISPSVLDLKHLNYLDLSLNNFRGS----------------RIPNFLG--SLEKLRYLNLSGASFAG  154 (467)
Q Consensus       102 ---------~l~~~~~~~l~~l~~L~~L~L~~n~i~~~----------------~~~~~~~--~l~~L~~L~L~~n~l~~  154 (467)
                               .++| +|..++++++|++|+|++|.+++.                .+|..++  ++++|++|++++|.+.+
T Consensus       185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence                     3333 444555555555555555555430                0444444  55555555555555555


Q ss_pred             CCCccCCCCCcCCeeeccCcc-CCC--CCCCChh--hcCCCCCCCEEECCCcCCCCCCCchhh--hcCCCCCCCEEECCC
Q 038320          155 NIPPSFGNLSSLQILDLNTFY-YSS--LESDDVE--WLSRLSSLQYLNLEGVDLSKAGSSWVQ--ATNMLPSLSELHLPA  227 (467)
Q Consensus       155 ~~p~~l~~l~~L~~L~l~~n~-~~~--l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~~--~~~~l~~L~~L~l~~  227 (467)
                      .+|..++++++|++|++++|. ++.  +|.....  .+..+++|++|++++|.++..    +.  .+..+++|++|++++
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i----p~~~~l~~l~~L~~L~L~~  339 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF----PVETSLQKMKKLGMLECLY  339 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC----CCHHHHTTCTTCCEEECCS
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc----CchhhhccCCCCCEEeCcC
Confidence            555555555555555555554 332  2221000  011225555555555555522    22  455566666666666


Q ss_pred             CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC-CCEEeccCCccccccchhhhCCC--CCCEEeCCCCCCCC
Q 038320          228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK-LAHLDLSANNLQGNIPDAFANMT--SLRELDLSENSLIG  304 (467)
Q Consensus       228 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~  304 (467)
                      |.+.+.+| .+..+++|++|++++|.++ .+|..+.++++ |+.|++++|.++ .+|..+..++  +|++|++++|.+ .
T Consensus       340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~  415 (636)
T 4eco_A          340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI-G  415 (636)
T ss_dssp             CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT-T
T ss_pred             CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC-C
Confidence            66665555 5566666666666666655 55555666666 666666666666 5555554433  566666666666 5


Q ss_pred             CCCccccc-------CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcc-ccCC-------CC
Q 038320          305 GQIPKDLG-------SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS-LGQL-------EN  369 (467)
Q Consensus       305 ~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~-l~~l-------~~  369 (467)
                      +..|..+.       .+++|++|++++|.+++..+..+..++     +|++|++++|+++ .+|.. +...       ++
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-----~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-----PLSSINLMGNMLT-EIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC-----CCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred             CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC-----CCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence            55555555       556677777777776643333333333     6777777777776 33332 2222       27


Q ss_pred             CCEEEccCCcCccccccccc--CCCCCCEEECcCCcCcccChhhhcCCCCCCEEeC------cCCCCcccCChhhhCCCC
Q 038320          370 LKILQLWGNLFRGSIPESIG--NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDI------SGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       370 L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l------~~n~~~~~~~~~~~~~l~  441 (467)
                      |++|++++|.++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|++      ++|++.+.+|. .+..++
T Consensus       490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~  566 (636)
T 4eco_A          490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCP  566 (636)
T ss_dssp             CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCS
T ss_pred             ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCC
Confidence            777777777777 5666665  77777777777777775 6777777777777777      45666777776 677777


Q ss_pred             CCCEEeccCCCCC
Q 038320          442 NLKELHIAKYSLA  454 (467)
Q Consensus       442 ~L~~l~l~~n~i~  454 (467)
                      +|+.|++++|+|.
T Consensus       567 ~L~~L~Ls~N~l~  579 (636)
T 4eco_A          567 SLTQLQIGSNDIR  579 (636)
T ss_dssp             SCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCC
Confidence            7777777777553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.8e-47  Score=400.51  Aligned_cols=390  Identities=21%  Similarity=0.232  Sum_probs=218.2

Q ss_pred             cccccHhhHHHHHHhHhcCCCCCCCCCC-CCCCCC--CCc------------ccEEecCCCCCEEEEEcCCCCCCCCcCC
Q 038320           32 IARCVQNEKEALLKIKASVTDPSGRLSS-WTGEDC--CKW------------EGVICDNSTGKVVQLKLRSPEIPDSFTD   96 (467)
Q Consensus        32 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~~~~~   96 (467)
                      ++.+..+|+.||++||+++.+|.+.... |...++  |.|            .||+|+. .+||+.|+|++         
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---------  332 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---------  332 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---------
T ss_pred             ccccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---------
Confidence            3445678999999999999877322221 222355  999            9999986 68999999998         


Q ss_pred             CCcccccccccCccccCCCCCCEEeC-CCCCCCCC---------------------------------------------
Q 038320           97 NGTTYQLEGEISPSVLDLKHLNYLDL-SLNNFRGS---------------------------------------------  130 (467)
Q Consensus        97 ~~~~~~l~~~~~~~l~~l~~L~~L~L-~~n~i~~~---------------------------------------------  130 (467)
                          +.+.|.+|+.++++++|++|+| ++|.+.|.                                             
T Consensus       333 ----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l  408 (876)
T 4ecn_A          333 ----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI  408 (876)
T ss_dssp             ----TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             ----CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence                5555555555555555555555 33322111                                             


Q ss_pred             ------------------------------CCCcccCCCCCCCEEEcCCCcCCC-----------------CCCccCC--
Q 038320          131 ------------------------------RIPNFLGSLEKLRYLNLSGASFAG-----------------NIPPSFG--  161 (467)
Q Consensus       131 ------------------------------~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--  161 (467)
                                                    .+|..++++++|++|+|++|.+++                 .+|..++  
T Consensus       409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~  488 (876)
T 4ecn_A          409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS  488 (876)
T ss_dssp             HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred             hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence                                          034445555555555555555554                 2555554  


Q ss_pred             CCCcCCeeeccCccCCC-CCCCChhhcCCCCCCCEEECCCcC-CCC-CCCchhh----hcCCCCCCCEEECCCCcCcccC
Q 038320          162 NLSSLQILDLNTFYYSS-LESDDVEWLSRLSSLQYLNLEGVD-LSK-AGSSWVQ----ATNMLPSLSELHLPACGLFEFP  234 (467)
Q Consensus       162 ~l~~L~~L~l~~n~~~~-l~~~~~~~l~~l~~L~~L~L~~n~-~~~-~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~  234 (467)
                      ++++|++|++++|.+.. +|..    +.++++|++|++++|. +++ ..+....    .+..+++|+.|++++|.+. .+
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i  563 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF  563 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred             cCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence            55555555555554332 2211    4455555555555554 443 2111000    1223334555555555544 33


Q ss_pred             Cc--cccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCC-CCEEeCCCCCCCCCCCcccc
Q 038320          235 PL--SVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS-LRELDLSENSLIGGQIPKDL  311 (467)
Q Consensus       235 ~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~l  311 (467)
                      |.  .+.++++|++|++++|.++ .+| .+.++++|+.|++++|.+. .+|..+..+++ |+.|++++|.+ . .+|..+
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~-~lp~~~  638 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-K-YIPNIF  638 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC-C-SCCSCC
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC-C-cCchhh
Confidence            33  4444455555555555444 444 4444444444444444444 44444444444 44444444444 2 333333


Q ss_pred             cCC-------------------------------CCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCC
Q 038320          312 GSL-------------------------------CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL  360 (467)
Q Consensus       312 ~~l-------------------------------~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~  360 (467)
                      ...                               ++|+.|++++|.++......+..+     ++|+.|++++|+++ .+
T Consensus       639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-----~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-----SPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-----CCCSEEECCSCCCS-CC
T ss_pred             hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-----CCCCEEECCCCcCC-cc
Confidence            222                               245555555555553222222222     36777777777776 33


Q ss_pred             CccccC--------CCCCCEEEccCCcCccccccccc--CCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcC-----
Q 038320          361 PNSLGQ--------LENLKILQLWGNLFRGSIPESIG--NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG-----  425 (467)
Q Consensus       361 ~~~l~~--------l~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~-----  425 (467)
                      |..+..        +++|++|++++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++     
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence            433322        226777777777777 6666665  67777777777777775 677777777777777755     


Q ss_pred             -CCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          426 -NPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       426 -n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                       |++.+.+|. .+..+++|+.|+|++|+|.
T Consensus       791 ~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~  819 (876)
T 4ecn_A          791 GNRILRQWPT-GITTCPSLIQLQIGSNDIR  819 (876)
T ss_dssp             CCBCCCCCCT-TGGGCSSCCEEECCSSCCC
T ss_pred             cccccccChH-HHhcCCCCCEEECCCCCCC
Confidence             666777776 6777777777777777553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-45  Score=392.60  Aligned_cols=371  Identities=31%  Similarity=0.396  Sum_probs=294.9

Q ss_pred             CEEEEEcCCCCC---------CCCcCCCCcccccccccCccccCC-CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcC
Q 038320           79 KVVQLKLRSPEI---------PDSFTDNGTTYQLEGEISPSVLDL-KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLS  148 (467)
Q Consensus        79 ~v~~l~l~~~~~---------~~~~~~~~~~~~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~  148 (467)
                      +++.++++++.+         +..+.+++++|.++|.+|..+... ++|++|++++|.+++. +|..++++++|++|+++
T Consensus       248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALS  326 (768)
T ss_dssp             SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECC
Confidence            456666655432         123455566677777777766554 7777777777777665 67777777777777777


Q ss_pred             CCcCCCCCCcc-CCCCCcCCeeeccCccCC-CCCCCCh---------------------hhcCC--CCCCCEEECCCcCC
Q 038320          149 GASFAGNIPPS-FGNLSSLQILDLNTFYYS-SLESDDV---------------------EWLSR--LSSLQYLNLEGVDL  203 (467)
Q Consensus       149 ~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~-~l~~~~~---------------------~~l~~--l~~L~~L~L~~n~~  203 (467)
                      +|.+.+.+|.. +.++++|++|++++|.+. .++....                     ..+..  +++|++|++++|.+
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            77776666654 667777777777777665 2332200                     01222  55677777777766


Q ss_pred             CCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc
Q 038320          204 SKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP  283 (467)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  283 (467)
                      ++..   +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|
T Consensus       407 ~~~~---p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          407 TGKI---PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             EEEC---CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccc---CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence            6544   3366778888888888888888888888888899999999998888888888888999999999999988888


Q ss_pred             hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcc
Q 038320          284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS  363 (467)
Q Consensus       284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~  363 (467)
                      ..+.++++|++|++++|++ .+.+|..++.+++|++|++++|.+++.+|..+..++     +|+.|++++|.+++.+|..
T Consensus       484 ~~l~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          484 SGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-----SLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-----TCCEEECCSSEEESBCCGG
T ss_pred             HHHhcCCCCCEEEccCCcc-CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-----CCCEEECCCCccCCcCChH
Confidence            8888899999999999988 778888888899999999999999888888887776     8999999999888766654


Q ss_pred             c----------------------------------------------------------------------cCCCCCCEE
Q 038320          364 L----------------------------------------------------------------------GQLENLKIL  373 (467)
Q Consensus       364 l----------------------------------------------------------------------~~l~~L~~L  373 (467)
                      +                                                                      +.+++|++|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence            3                                                                      335679999


Q ss_pred             EccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCC
Q 038320          374 QLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       374 ~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i  453 (467)
                      ++++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|++||+++|+++|.+|. .+..+++|+.|++++|  
T Consensus       638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N--  714 (768)
T 3rgz_A          638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNN--  714 (768)
T ss_dssp             ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSS--
T ss_pred             ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCC--
Confidence            9999999999999999999999999999999999999999999999999999999999999 8999999999999999  


Q ss_pred             CCCccEEEecCCC
Q 038320          454 APRLTLVFNVSPE  466 (467)
Q Consensus       454 ~~~~~~~g~~p~~  466 (467)
                          .++|.||..
T Consensus       715 ----~l~g~iP~~  723 (768)
T 3rgz_A          715 ----NLSGPIPEM  723 (768)
T ss_dssp             ----EEEEECCSS
T ss_pred             ----cccccCCCc
Confidence                889999964

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-41  Score=338.46  Aligned_cols=368  Identities=21%  Similarity=0.248  Sum_probs=308.0

Q ss_pred             CCCCccc--EEecCCC--------CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCC
Q 038320           64 DCCKWEG--VICDNST--------GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIP  133 (467)
Q Consensus        64 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  133 (467)
                      ..|.|.+  |.|....        .+++.+++++             |.+++..|..+.++++|++|++++|.+.+...+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~   72 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL-------------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN   72 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS-------------SCCCEECTTTTSSCTTCCEEECCCCSTTCEECT
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecC-------------CccCcCChhHhccCccccEEECcCCcccceECc
Confidence            3455544  6665322        4577777777             889988899999999999999999998765346


Q ss_pred             cccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCC-CCCChhhcCCCCCCCEEECCCcCCCCCCCchhh
Q 038320          134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL-ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ  212 (467)
Q Consensus       134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l-~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  212 (467)
                      ..+.++++|++|++++|.+++..|..+.++++|++|++++|.++.. +..  ..+.++++|++|++++|.+++..+.  .
T Consensus        73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~  148 (455)
T 3v47_A           73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPA--S  148 (455)
T ss_dssp             TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCC--G
T ss_pred             ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcc--c
Confidence            7899999999999999999988899999999999999999998752 111  1278899999999999999887543  1


Q ss_pred             hcCCCCCCCEEECCCCcCcccCCccccCC--CCCcEEEccCCcCCCCcchh--------ccCCCCCCEEeccCCcccccc
Q 038320          213 ATNMLPSLSELHLPACGLFEFPPLSVVNF--SSLLFLDLSSNDFNSSIPQW--------LLNISKLAHLDLSANNLQGNI  282 (467)
Q Consensus       213 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~  282 (467)
                      .+..+++|++|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+..        +..+++|+.|++++|.+++..
T Consensus       149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence            36789999999999999999988888776  78999999999998654433        335689999999999999888


Q ss_pred             chhhhCC---CCCCEEeCCCCCCCCCCC---------ccccc--CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320          283 PDAFANM---TSLRELDLSENSLIGGQI---------PKDLG--SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES  348 (467)
Q Consensus       283 ~~~l~~l---~~L~~L~L~~n~l~~~~~---------~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~  348 (467)
                      +..+...   ++|+.|++++|.......         +..+.  ..++|+.|++++|.+++..+..+..++     +|++
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~  303 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-----DLEQ  303 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-----TCCE
T ss_pred             hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-----CCCE
Confidence            8777554   899999999986522111         11122  236899999999999998888887776     9999


Q ss_pred             EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320          349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~  428 (467)
                      |++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus       304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence            99999999998899999999999999999999988888999999999999999999988899999999999999999999


Q ss_pred             cccCChhhhCCCCCCCEEeccCCCCC
Q 038320          429 IGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       429 ~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ++..+. .|..+++|+.|++++|+++
T Consensus       384 ~~~~~~-~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          384 KSVPDG-IFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             SCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred             ccCCHh-HhccCCcccEEEccCCCcc
Confidence            876555 7899999999999999554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.4e-40  Score=342.44  Aligned_cols=354  Identities=19%  Similarity=0.153  Sum_probs=224.1

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      ..++.+++++             |.+++..|..+.++++|++|++++|++.+. .|..|+++++|++|++++|.+.+..|
T Consensus        33 ~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           33 NSTECLEFSF-------------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             TTCCEEECTT-------------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred             CcCcEEEccC-------------CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccCh
Confidence            3567777776             778777777888888888888888888765 67778888888888888888887777


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                      ..++++++|++|++++|.++.++...   +.++++|++|++++|.+.+...   ..+..+++|++|++++|.+.+..+..
T Consensus        99 ~~~~~l~~L~~L~L~~n~i~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           99 TALSGPKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSNHISSIKL---PKGFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             TTTSSCTTCCEEECTTSCCSCGGGSC---CTTCTTCCEEECCSSCCCCCCC---CTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred             hhhcccccccEeeccccCcccCCcch---hccCCcccEEECCCCcccccCc---ccccCCcccCEEEcccCcccccChhh
Confidence            78888888888888888887764333   6778888888888888776431   13344777888888887777776666


Q ss_pred             ccCCCCCc--EEEccCCcCCCCcchhccCC--------------------------------------------------
Q 038320          238 VVNFSSLL--FLDLSSNDFNSSIPQWLLNI--------------------------------------------------  265 (467)
Q Consensus       238 l~~l~~L~--~L~l~~n~l~~~~~~~l~~l--------------------------------------------------  265 (467)
                      +..+++|+  .|++++|.+++..|..+...                                                  
T Consensus       173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~  252 (606)
T 3t6q_A          173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC  252 (606)
T ss_dssp             HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred             hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence            66777776  66666666654433322110                                                  


Q ss_pred             -CCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh-----
Q 038320          266 -SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS-----  339 (467)
Q Consensus       266 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-----  339 (467)
                       .+|+.|++++|.+++..+..+..+++|++|++++|.+  ..+|..+..+++|++|++++|.+++..+..+..++     
T Consensus       253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC--SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             cCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc--CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence             0344445555555444444455555555555555554  24444455555555555555555544443333332     


Q ss_pred             ---------------cccCCCccEEECcCCCCCcCC--CccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320          340 ---------------KCANSSLESLDLGQNNLGGFL--PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN  402 (467)
Q Consensus       340 ---------------~~~~~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n  402 (467)
                                     ....++|++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence                           001125566666666555443  445556666666666666666555566666666666666666


Q ss_pred             cCcccChh-hhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          403 LMDGTIPK-SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       403 ~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ++.+..+. .+..+++|++|++++|.+.+..+. .+..+++|+.|++++|+++
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCG
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCC
Confidence            66555443 356666666666666666665555 5666667777777777554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.3e-42  Score=325.41  Aligned_cols=292  Identities=34%  Similarity=0.523  Sum_probs=189.6

Q ss_pred             cccHhhHHHHHHhHhcCCCCCCCCCCCC-CCCCCC--cccEEecCCC--CCEEEEEcCCCCCCCCcCCCCccccccc--c
Q 038320           34 RCVQNEKEALLKIKASVTDPSGRLSSWT-GEDCCK--WEGVICDNST--GKVVQLKLRSPEIPDSFTDNGTTYQLEG--E  106 (467)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~-~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~l~~--~  106 (467)
                      .|.++|++||++||+++.+|. .+.+|. +.+||.  |.||+|+...  ++|+.+++++             +.+++  .
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-------------~~l~~~~~   67 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------LNLPKPYP   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-------------CCCSSCEE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-------------CCccCCcc
Confidence            588999999999999998876 678994 678998  9999998655  8999999998             78888  8


Q ss_pred             cCccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320          107 ISPSVLDLKHLNYLDLSL-NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE  185 (467)
Q Consensus       107 ~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~  185 (467)
                      +|..+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.++++|++|++++|.++        
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--------  138 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--------  138 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE--------
T ss_pred             cChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC--------
Confidence            888888888888888885 777776 7888888888888888888887777776666666666666655543        


Q ss_pred             hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 038320          186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI  265 (467)
Q Consensus       186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  265 (467)
                                                                    +..|..+..+++|++|++++|.+++.+|..+..+
T Consensus       139 ----------------------------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A          139 ----------------------------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             ----------------------------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             ----------------------------------------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence                                                          2223334444555555555555555555555555


Q ss_pred             C-CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320          266 S-KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS  344 (467)
Q Consensus       266 ~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  344 (467)
                      + +|+.|++++|.+++..|..+..++ |+.|++++|.+ .+..+..+..+++|+.|++++|.+++..+. +...     +
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l-----~  244 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS-----K  244 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC-----T
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc-----C
Confidence            5 566666666666666666665555 66666666665 445555555666666666666555543332 1111     2


Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL  403 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~  403 (467)
                      +|++|++++|++++.+|..+..+++|++|++++|.++|.+|.. ..+++|+.+++++|+
T Consensus       245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            4455555555554444444444455555555555554444443 444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-40  Score=344.30  Aligned_cols=186  Identities=24%  Similarity=0.237  Sum_probs=144.2

Q ss_pred             CCCCCCEEeccCCccccc--cchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh-hHHHhhhc
Q 038320          264 NISKLAHLDLSANNLQGN--IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII-EFVDRLSK  340 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~  340 (467)
                      .+++|+.|++++|.+++.  .+..+..+++|++|++++|.+  ..++..+..+++|+.|++++|.+.+..+ ..+..++ 
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-  424 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-  424 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE--EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc--ccchhhccCCCCCCeeECCCCccCCccChhhhhccc-
Confidence            345566666666666544  366677777777777777776  2355677778888888888888777655 4455444 


Q ss_pred             ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcc-cccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320          341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV  419 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  419 (467)
                          +|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus       425 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          425 ----KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             ----TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ----cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence                88888888888888888888888888888888888887 3677788888888888888888888888888888888


Q ss_pred             EEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320          420 VLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       420 ~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                      +|++++|++++.+|. .|..+++|+.|++++|+|+..+
T Consensus       501 ~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             EEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCCCEE
T ss_pred             EEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCcccC
Confidence            888888888887777 7888888888888888877444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.2e-39  Score=336.32  Aligned_cols=228  Identities=26%  Similarity=0.311  Sum_probs=131.2

Q ss_pred             CCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320          220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE  299 (467)
Q Consensus       220 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  299 (467)
                      |+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            334444444444444444555556666666666555 4555555555666666666655554455555555555555555


Q ss_pred             CCCCCCCCcc-cccCCCCCCEEeccCCcCC--------------------------CchhhHHHhhhcccCCCccEEECc
Q 038320          300 NSLIGGQIPK-DLGSLCNLWDLDLSGNDLD--------------------------GEIIEFVDRLSKCANSSLESLDLG  352 (467)
Q Consensus       300 n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~--------------------------~~~~~~l~~~~~~~~~~L~~L~L~  352 (467)
                      |.+ .+.++. .+..+++|++|++++|.++                          +..+..+..++     +|++|+++
T Consensus       335 n~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~  408 (606)
T 3t6q_A          335 NTK-RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-----QLELLDLA  408 (606)
T ss_dssp             CSS-CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT-----TCSEEECT
T ss_pred             CCc-ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc-----cCCeEECC
Confidence            554 222222 2444455555555555444                          43333333332     56666666


Q ss_pred             CCCCCcCCCc-cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc---ChhhhcCCCCCCEEeCcCCCC
Q 038320          353 QNNLGGFLPN-SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT---IPKSLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       353 ~n~i~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~l~~n~~  428 (467)
                      +|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|++
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence            6666554333 356666666666666666666666666677777777777776652   224566677777777777777


Q ss_pred             cccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          429 IGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       429 ~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      ++..|. .|..+++|+.|++++|+++.
T Consensus       489 ~~~~~~-~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          489 SSIDQH-AFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CEECTT-TTTTCTTCCEEECCSSCCCG
T ss_pred             CccChh-hhccccCCCEEECCCCccCc
Confidence            766666 67777777777777776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=333.67  Aligned_cols=349  Identities=23%  Similarity=0.238  Sum_probs=229.7

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++++             |.+++..+..+..+++|++|++++|++++. .+..++++++|++|++++|.+++..|
T Consensus        28 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           28 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             SSCCEEECCS-------------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             ccccEEEccC-------------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCH
Confidence            4577778777             555555555566666666666666665543 44555666666666666666655455


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                      ..|.++++|++|++++|.++.++...   ++++++|++|++++|.+....  .+..+..+++|++|++++|.+.+..+..
T Consensus        94 ~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCS---CTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred             hhhcCccccccccccccccccCCCcc---ccccccccEEecCCCccceec--ChhhhcccCCCCEEeCcCCccceecHHH
Confidence            55666666666666666655554432   455566666666666555421  0224445555555555555544333222


Q ss_pred             cc------------------------------------------------------------------------------
Q 038320          238 VV------------------------------------------------------------------------------  239 (467)
Q Consensus       238 l~------------------------------------------------------------------------------  239 (467)
                      +.                                                                              
T Consensus       169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~  248 (570)
T 2z63_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK  248 (570)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred             ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence            22                                                                              


Q ss_pred             -------------------------------CCCCCcEEEccCCcCCCCcchhcc-------------------------
Q 038320          240 -------------------------------NFSSLLFLDLSSNDFNSSIPQWLL-------------------------  263 (467)
Q Consensus       240 -------------------------------~l~~L~~L~l~~n~l~~~~~~~l~-------------------------  263 (467)
                                                     .+++|++|++++|.++ .+|..+.                         
T Consensus       249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L  327 (570)
T 2z63_A          249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL  327 (570)
T ss_dssp             TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSC
T ss_pred             hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCccccccc
Confidence                                           2344455555544443 2333222                         


Q ss_pred             -----------------CCCCCCEEeccCCcccccc--chhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320          264 -----------------NISKLAHLDLSANNLQGNI--PDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG  324 (467)
Q Consensus       264 -----------------~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  324 (467)
                                       .+++|+.|++++|.+++..  +..+..+++|++|++++|.+ . .++..+..+++|+.|++++
T Consensus       328 ~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~-~~~~~~~~l~~L~~L~l~~  405 (570)
T 2z63_A          328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I-TMSSNFLGLEQLEHLDFQH  405 (570)
T ss_dssp             CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-E-EEEEEEETCTTCCEEECTT
T ss_pred             CEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-c-cccccccccCCCCEEEccC
Confidence                             3344555555555544332  44555666666666666665 2 2333366777777777777


Q ss_pred             CcCCCchh-hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECcCC
Q 038320          325 NDLDGEII-EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNN  402 (467)
Q Consensus       325 n~l~~~~~-~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n  402 (467)
                      |.+.+..+ ..+..+     ++|++|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|
T Consensus       406 n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          406 SNLKQMSEFSVFLSL-----RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             SEEESCTTSCTTTTC-----TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             CccccccchhhhhcC-----CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            77766544 233443     38999999999999888889999999999999999997 578888999999999999999


Q ss_pred             cCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       403 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ++++..|..+..+++|++|++++|++++..+. .|..+++|+.|++++|+++
T Consensus       481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred             ccccCChhhhhcccCCCEEeCCCCcCCCCCHH-HhhcccCCcEEEecCCccc
Confidence            99988899999999999999999999987776 7899999999999999443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-40  Score=344.90  Aligned_cols=342  Identities=21%  Similarity=0.220  Sum_probs=295.5

Q ss_pred             CcCCCCcccccccc-----------------cCcccc--CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc-C
Q 038320           93 SFTDNGTTYQLEGE-----------------ISPSVL--DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS-F  152 (467)
Q Consensus        93 ~~~~~~~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l  152 (467)
                      .+.+++++|.++|.                 +|..++  ++++|++|++++|.+.+. +|..++++++|++|++++|+ +
T Consensus       208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCC
Confidence            34555555888886                 999999  999999999999999987 99999999999999999998 9


Q ss_pred             CC-CCCccCCCC------CcCCeeeccCccCCCCCC--CChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEE
Q 038320          153 AG-NIPPSFGNL------SSLQILDLNTFYYSSLES--DDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL  223 (467)
Q Consensus       153 ~~-~~p~~l~~l------~~L~~L~l~~n~~~~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L  223 (467)
                      ++ .+|..++++      ++|++|++++|.++.+|.  .    +.++++|++|++++|.+++..+    .+..+++|++|
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~----l~~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L  358 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS----LQKMKKLGMLECLYNQLEGKLP----AFGSEIKLASL  358 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH----HTTCTTCCEEECCSCCCEEECC----CCEEEEEESEE
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh----hccCCCCCEEeCcCCcCccchh----hhCCCCCCCEE
Confidence            88 889888776      999999999999997776  4    8999999999999999985543    67778999999


Q ss_pred             ECCCCcCcccCCccccCCCC-CcEEEccCCcCCCCcchhccCCC--CCCEEeccCCccccccchhhh-------CCCCCC
Q 038320          224 HLPACGLFEFPPLSVVNFSS-LLFLDLSSNDFNSSIPQWLLNIS--KLAHLDLSANNLQGNIPDAFA-------NMTSLR  293 (467)
Q Consensus       224 ~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~~L~  293 (467)
                      ++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+  +|+.|++++|.+.+..|..+.       .+++|+
T Consensus       359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            99999999 66677999999 999999999998 8888877655  899999999999999888888       788999


Q ss_pred             EEeCCCCCCCCCCCcc-cccCCCCCCEEeccCCcCCCchhhHHHhhh---cccCCCccEEECcCCCCCcCCCcccc--CC
Q 038320          294 ELDLSENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDGEIIEFVDRLS---KCANSSLESLDLGQNNLGGFLPNSLG--QL  367 (467)
Q Consensus       294 ~L~L~~n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~l~--~l  367 (467)
                      +|++++|.+ . .+|. .+..+++|++|++++|.++ .+|.......   ...+++|++|++++|+++ .+|..+.  .+
T Consensus       437 ~L~Ls~N~l-~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l  512 (636)
T 4eco_A          437 SINLSNNQI-S-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL  512 (636)
T ss_dssp             EEECCSSCC-C-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred             EEECcCCcc-C-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence            999999999 4 4554 4567999999999999998 4443322211   001127999999999999 6788886  99


Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCCEEEC------cCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320          368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYL------HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  441 (467)
                      ++|++|++++|.+++ +|..+..+++|+.|++      ++|++.+.+|..+..+++|++|++++|++ +.+|. .+.  +
T Consensus       513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~-~~~--~  587 (636)
T 4eco_A          513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE-KIT--P  587 (636)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--T
T ss_pred             CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH-hHh--C
Confidence            999999999999997 8999999999999999      56788889999999999999999999999 77887 444  8


Q ss_pred             CCCEEeccCCCCC
Q 038320          442 NLKELHIAKYSLA  454 (467)
Q Consensus       442 ~L~~l~l~~n~i~  454 (467)
                      +|+.|++++|++.
T Consensus       588 ~L~~L~Ls~N~l~  600 (636)
T 4eco_A          588 NISVLDIKDNPNI  600 (636)
T ss_dssp             TCCEEECCSCTTC
T ss_pred             cCCEEECcCCCCc
Confidence            9999999999886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-39  Score=333.72  Aligned_cols=359  Identities=26%  Similarity=0.303  Sum_probs=247.8

Q ss_pred             CCCcccEEecCCC-----------CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCC
Q 038320           65 CCKWEGVICDNST-----------GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIP  133 (467)
Q Consensus        65 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  133 (467)
                      .|.|.|+ |+...           .+++.+++++             |.+++..|..+..+++|++|++++|++++. .|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~   67 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF-------------NKITYIGHGDLRACANLQVLILKSSRINTI-EG   67 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS-------------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcC-------------CccCccChhhhhcCCcccEEECCCCCcCcc-Ch
Confidence            3778777 75432           2455666665             888888888889999999999999988865 66


Q ss_pred             cccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh
Q 038320          134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA  213 (467)
Q Consensus       134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  213 (467)
                      ..++++++|++|++++|.+++..|..++++++|++|++++|.++.++..  ..+.++++|++|++++|.+.+..+  ...
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~--~~~  143 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIR--RID  143 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEEC--TTT
T ss_pred             hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh--hhhhccCCccEEECCCCccccccC--Hhh
Confidence            7888899999999999999876666688999999999999988754321  127888899999998887433321  235


Q ss_pred             cCCCCCCCEEECCCCcCcccCCccccC------------------------CCCCcEEEccCCcCCCCc--chh-ccCC-
Q 038320          214 TNMLPSLSELHLPACGLFEFPPLSVVN------------------------FSSLLFLDLSSNDFNSSI--PQW-LLNI-  265 (467)
Q Consensus       214 ~~~l~~L~~L~l~~n~~~~~~~~~l~~------------------------l~~L~~L~l~~n~l~~~~--~~~-l~~l-  265 (467)
                      +..+++|++|++++|.+.+..+..+..                        +++|++|++++|.+++..  +.. ...+ 
T Consensus       144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  223 (549)
T 2z81_A          144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS  223 (549)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred             hhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence            677888888888888888777766654                        455666666666555421  000 0001 


Q ss_pred             --------------------------------------------------------------------------------
Q 038320          266 --------------------------------------------------------------------------------  265 (467)
Q Consensus       266 --------------------------------------------------------------------------------  265 (467)
                                                                                                      
T Consensus       224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~  303 (549)
T 2z81_A          224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS  303 (549)
T ss_dssp             CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred             cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence                                                                                            


Q ss_pred             ------CCCCEEeccCCccccccchhh-hCCCCCCEEeCCCCCCCCCCCc---ccccCCCCCCEEeccCCcCCCchh--h
Q 038320          266 ------SKLAHLDLSANNLQGNIPDAF-ANMTSLRELDLSENSLIGGQIP---KDLGSLCNLWDLDLSGNDLDGEII--E  333 (467)
Q Consensus       266 ------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~--~  333 (467)
                            ++|+.|++++|.+. .+|..+ ..+++|++|++++|.+ .+.+|   ..++.+++|++|++++|.+++..+  .
T Consensus       304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  381 (549)
T 2z81_A          304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM-VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE  381 (549)
T ss_dssp             HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC-CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred             hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc-ccccccchhhhhccccCcEEEccCCcccccccchh
Confidence                  12333333333332 234333 4577888888888877 44443   235677888888888888876432  3


Q ss_pred             HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc------------------cCCCCCC
Q 038320          334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI------------------GNLSSLR  395 (467)
Q Consensus       334 ~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l------------------~~~~~L~  395 (467)
                      .+..++     +|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+                  ..+++|+
T Consensus       382 ~~~~l~-----~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~  454 (549)
T 2z81_A          382 ILLTLK-----NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ  454 (549)
T ss_dssp             HGGGCT-----TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCC
T ss_pred             hhhcCC-----CCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhc
Confidence            344443     8888888888887 567777777778888877777652 22221                  2567788


Q ss_pred             EEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       396 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      +|++++|+++ .+|. ...+++|++|++++|++++.++. .|..+++|+.|++++|++.
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG-IFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT-GGGGCTTCCEEECCSSCBC
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH-HHhcCcccCEEEecCCCcc
Confidence            8888888887 5665 45788888888888888877766 6788888888888888543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-38  Score=327.02  Aligned_cols=342  Identities=22%  Similarity=0.266  Sum_probs=269.7

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++++             |.+++..+..+..+++|++|++++|++++. .|..+.++++|++|++++|.++ .+|
T Consensus        52 ~~L~~L~Ls~-------------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp  116 (562)
T 3a79_B           52 PRTKALSLSQ-------------NSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NIS  116 (562)
T ss_dssp             TTCCEEECCS-------------SCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred             CCcCEEECCC-------------CCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccC
Confidence            5677888887             888888888999999999999999999875 6888999999999999999998 677


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcC--cccCC
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL--FEFPP  235 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~~  235 (467)
                      ..  .+++|++|++++|.++.++..  ..+.++++|++|++++|.++...   ...+..+ +|++|++++|.+  .+..+
T Consensus       117 ~~--~l~~L~~L~Ls~N~l~~l~~p--~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L-~L~~L~L~~n~l~~~~~~~  188 (562)
T 3a79_B          117 CC--PMASLRHLDLSFNDFDVLPVC--KEFGNLTKLTFLGLSAAKFRQLD---LLPVAHL-HLSCILLDLVSYHIKGGET  188 (562)
T ss_dssp             SC--CCTTCSEEECCSSCCSBCCCC--GGGGGCTTCCEEEEECSBCCTTT---TGGGTTS-CEEEEEEEESSCCCCSSSC
T ss_pred             cc--ccccCCEEECCCCCccccCch--HhhcccCcccEEecCCCccccCc---hhhhhhc-eeeEEEeecccccccccCc
Confidence            66  899999999999999876531  12888999999999999998643   2233333 449999999988  66555


Q ss_pred             ccccCCC-------------------------------------------------------------------------
Q 038320          236 LSVVNFS-------------------------------------------------------------------------  242 (467)
Q Consensus       236 ~~l~~l~-------------------------------------------------------------------------  242 (467)
                      ..+..+.                                                                         
T Consensus       189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~  268 (562)
T 3a79_B          189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK  268 (562)
T ss_dssp             CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred             ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence            5444322                                                                         


Q ss_pred             --------CCcEEEccCCcCCCCcchhc-----cCCC--------------------------CCCEEeccCCccccccc
Q 038320          243 --------SLLFLDLSSNDFNSSIPQWL-----LNIS--------------------------KLAHLDLSANNLQGNIP  283 (467)
Q Consensus       243 --------~L~~L~l~~n~l~~~~~~~l-----~~l~--------------------------~L~~L~l~~n~l~~~~~  283 (467)
                              +|++|++++|.+++.+|..+     .+++                          +|+.|++++|.+.... 
T Consensus       269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-  347 (562)
T 3a79_B          269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-  347 (562)
T ss_dssp             HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-
Confidence                    55566666666665555544     2222                          2444444444443211 


Q ss_pred             hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC--chhhHHHhhhcccCCCccEEECcCCCCCcCCC
Q 038320          284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG--EIIEFVDRLSKCANSSLESLDLGQNNLGGFLP  361 (467)
Q Consensus       284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~  361 (467)
                       ....+++|++|++++|.+ .+..|..+..+++|+.|++++|.+++  ..+..+..++     +|++|++++|++++.+|
T Consensus       348 -~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-----~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          348 -CPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-----SLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             -CCSSCCCCCEEECCSSCC-CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-----TCCEEECTTSCCBSCCS
T ss_pred             -CccCCCCceEEECCCCcc-ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-----CCCEEECCCCcCCCccC
Confidence             016789999999999999 77788899999999999999999987  3345555554     99999999999998455


Q ss_pred             c-cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC
Q 038320          362 N-SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL  440 (467)
Q Consensus       362 ~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  440 (467)
                      . .+..+++|++|++++|.+++.+|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|...|..+
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l  496 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRL  496 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTC
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcC
Confidence            4 588899999999999999987776654  79999999999998 788888899999999999999984 665358999


Q ss_pred             CCCCEEeccCCCCC
Q 038320          441 KNLKELHIAKYSLA  454 (467)
Q Consensus       441 ~~L~~l~l~~n~i~  454 (467)
                      ++|+.|++++|++.
T Consensus       497 ~~L~~L~l~~N~~~  510 (562)
T 3a79_B          497 TSLQYIWLHDNPWD  510 (562)
T ss_dssp             TTCCCEECCSCCBC
T ss_pred             CCCCEEEecCCCcC
Confidence            99999999999665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.7e-39  Score=333.26  Aligned_cols=364  Identities=22%  Similarity=0.203  Sum_probs=279.8

Q ss_pred             CCEEEEEcCCCCCC-----------CCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEE
Q 038320           78 GKVVQLKLRSPEIP-----------DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN  146 (467)
Q Consensus        78 ~~v~~l~l~~~~~~-----------~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  146 (467)
                      .+++.++++++.+.           ..+.+++++|.+++..|..+.++++|++|++++|.+++. .|..++++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEE
Confidence            46788888775432           125566667777777777778888888888888887765 577788888888888


Q ss_pred             cCCCcCCCCCCccCCCCCcCCeeeccCccCCC--CCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh-----------
Q 038320          147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSS--LESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA-----------  213 (467)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-----------  213 (467)
                      +++|.+.+..+..++++++|++|++++|.+..  +|..    +.++++|++|++++|.+++..+.....           
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L  186 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY----FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL  186 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG----GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHh----HhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence            88888776665667788888888888887764  3333    777888888888877766543221100           


Q ss_pred             --------------------------------------------------------------------------------
Q 038320          214 --------------------------------------------------------------------------------  213 (467)
Q Consensus       214 --------------------------------------------------------------------------------  213 (467)
                                                                                                      
T Consensus       187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  266 (606)
T 3vq2_A          187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF  266 (606)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred             eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence                                                                                            


Q ss_pred             ------------------------------------cCCCCCCCEEECCCCcCcccC-------------------Cccc
Q 038320          214 ------------------------------------TNMLPSLSELHLPACGLFEFP-------------------PLSV  238 (467)
Q Consensus       214 ------------------------------------~~~l~~L~~L~l~~n~~~~~~-------------------~~~l  238 (467)
                                                          +..+++|++|++++|.+...+                   +..+
T Consensus       267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~  346 (606)
T 3vq2_A          267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK  346 (606)
T ss_dssp             EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred             eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhh
Confidence                                                112223444444444432111                   0122


Q ss_pred             cCCCCCcEEEccCCcCCCC--cchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCc-ccccCCC
Q 038320          239 VNFSSLLFLDLSSNDFNSS--IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLC  315 (467)
Q Consensus       239 ~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~  315 (467)
                      ..+++|++|++++|.+++.  .+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+ .+..+ ..+..++
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~  424 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE-ESTTTTTTTTTCT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc-CCccChhhhhccc
Confidence            3455666666666666544  36778899999999999999885 567889999999999999998 55555 6788999


Q ss_pred             CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCc-CCCccccCCCCCCEEEccCCcCcccccccccCCCCC
Q 038320          316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG-FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSL  394 (467)
Q Consensus       316 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L  394 (467)
                      +|++|++++|.+++..+..+..++     +|++|++++|.+++ .+|..++.+++|++|++++|.+++..|..+..+++|
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLT-----SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCT-----TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCEEECcCCCCCccchhhhcCCC-----CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            999999999999988888777766     99999999999997 478899999999999999999999889999999999


Q ss_pred             CEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC-CCCEEeccCCCCCC
Q 038320          395 RELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK-NLKELHIAKYSLAP  455 (467)
Q Consensus       395 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~l~l~~n~i~~  455 (467)
                      ++|++++|++++..|..+..+++|++|++++|+++ .+|. .+..++ +|+.|++++|++..
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~-~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG-ILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES-CGGGSCTTCCEEECCSCCCCC
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH-hHhhhcccCcEEEccCCCccc
Confidence            99999999999989999999999999999999988 5666 477887 59999999997763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=324.23  Aligned_cols=341  Identities=21%  Similarity=0.286  Sum_probs=272.5

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++++             |.+++..|..+..+++|++|++++|++++. .|..++++++|++|++++|.++ .+|
T Consensus        21 ~~L~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp   85 (520)
T 2z7x_B           21 QKTTILNISQ-------------NYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KIS   85 (520)
T ss_dssp             TTCSEEECCS-------------SCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred             ccccEEECCC-------------CcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecC
Confidence            4566666666             888887778899999999999999999865 6888999999999999999998 577


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCC--CEEECCCCcC--ccc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL--SELHLPACGL--FEF  233 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~  233 (467)
                      ..  .+++|++|++++|.++.++..  ..++++++|++|++++|.+++.      .+..+++|  ++|++++|.+  .+.
T Consensus        86 ~~--~l~~L~~L~L~~N~l~~~~~p--~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           86 CH--PTVNLKHLDLSFNAFDALPIC--KEFGNMSQLKFLGLSTTHLEKS------SVLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CC--CCCCCSEEECCSSCCSSCCCC--GGGGGCTTCCEEEEEESSCCGG------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             cc--ccCCccEEeccCCccccccch--hhhccCCcceEEEecCcccchh------hccccccceeeEEEeeccccccccc
Confidence            65  899999999999998864321  1288899999999999988763      34556666  9999999988  555


Q ss_pred             CCccccCCC-----------------------------------------------------------------------
Q 038320          234 PPLSVVNFS-----------------------------------------------------------------------  242 (467)
Q Consensus       234 ~~~~l~~l~-----------------------------------------------------------------------  242 (467)
                      .|..+..+.                                                                       
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence            554444322                                                                       


Q ss_pred             ------------CCcEEEccCCcCCCCcchhc-----cCCCCCCEEeccCCccccccc-hh-------------------
Q 038320          243 ------------SLLFLDLSSNDFNSSIPQWL-----LNISKLAHLDLSANNLQGNIP-DA-------------------  285 (467)
Q Consensus       243 ------------~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~-------------------  285 (467)
                                  +|++|++++|.+++.+|..+     .++++|+.+++++|.+  .+| ..                   
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence                        56777777777776777766     5566555555555554  222 11                   


Q ss_pred             ------hhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC--chhhHHHhhhcccCCCccEEECcCCCCC
Q 038320          286 ------FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG--EIIEFVDRLSKCANSSLESLDLGQNNLG  357 (467)
Q Consensus       286 ------l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~L~L~~n~i~  357 (467)
                            ...+++|++|++++|.+ .+..|..+..+++|++|++++|.+++  ..|..+..++     +|++|++++|.++
T Consensus       314 l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-----~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          314 MVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-----SLQQLDISQNSVS  387 (520)
T ss_dssp             CCCCCCCSSCCCCCEEECCSSCC-CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-----TCCEEECCSSCCB
T ss_pred             cccccchhhCCcccEEEeECCcc-ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-----CCCEEECCCCcCC
Confidence                  15788999999999999 77788889999999999999999997  4556666665     9999999999999


Q ss_pred             cCCCc-cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhh
Q 038320          358 GFLPN-SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVH  436 (467)
Q Consensus       358 ~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~  436 (467)
                      +.+|. .+..+++|++|++++|.+++.+|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|...
T Consensus       388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~  463 (520)
T 2z7x_B          388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGI  463 (520)
T ss_dssp             CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTT
T ss_pred             cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHH
Confidence            85555 478899999999999999988877664  79999999999998 888888899999999999999884 66536


Q ss_pred             hCCCCCCCEEeccCCCCCC
Q 038320          437 FSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       437 ~~~l~~L~~l~l~~n~i~~  455 (467)
                      |..+++|+.|++++|+++.
T Consensus       464 ~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          464 FDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TTTCTTCCEEECCSSCBCC
T ss_pred             hccCCcccEEECcCCCCcc
Confidence            8899999999999996653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.1e-38  Score=328.55  Aligned_cols=354  Identities=25%  Similarity=0.241  Sum_probs=183.4

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++++             |.+++..+..+.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+
T Consensus        25 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~   90 (680)
T 1ziw_A           25 TNITVLNLTH-------------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSD   90 (680)
T ss_dssp             TTCSEEECCS-------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcEEECCC-------------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccCh
Confidence            4678888887             444444444455555555555555555443 44445555555555555555543222


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                      ..|.++++|++|++++|.+..+++..   +.++++|++|++++|.+++..+.   .+..+++|++|++++|.+++..+..
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQKIKNNP---FVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCSCT---TTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             hhhccCCCCCEEECCCCccCccChhH---ccccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCHHH
Confidence            33555555555555555554444322   44455555555555554444321   3344445555555555444444332


Q ss_pred             cc--CCCCCcEEEccCCcCC---------------------------------------------------CCcchhccC
Q 038320          238 VV--NFSSLLFLDLSSNDFN---------------------------------------------------SSIPQWLLN  264 (467)
Q Consensus       238 l~--~l~~L~~L~l~~n~l~---------------------------------------------------~~~~~~l~~  264 (467)
                      +.  .+++|++|++++|.++                                                   +..|.++.+
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence            22  2344444444444444                                                   333444443


Q ss_pred             CCC--CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh----hHHHhh
Q 038320          265 ISK--LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII----EFVDRL  338 (467)
Q Consensus       265 l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~~  338 (467)
                      ++.  |+.|++++|.+++..+..++.+++|++|++++|.+ .+..+..+..+++|+.|++++|...+.++    ..+...
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-CccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence            322  55555555555544445555555555555555555 44444455555555555555543332111    000111


Q ss_pred             hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccc-c-cccc--CCCCCCEEECcCCcCcccChhhhcC
Q 038320          339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI-P-ESIG--NLSSLRELYLHNNLMDGTIPKSLGK  414 (467)
Q Consensus       339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~-~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~  414 (467)
                      ....+++|++|++++|.+++..+..+..+++|++|++++|.+.... + ..+.  ..++|+.|++++|++++..|..+..
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            1223347888888888888777777788887877777776543211 1 1111  1235555555666665555566666


Q ss_pred             CCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320          415 LSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       415 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      +++|++|++++|++++.++...|..+++|+.|++++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            66666666666666655554356666666666666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-37  Score=324.10  Aligned_cols=371  Identities=22%  Similarity=0.231  Sum_probs=222.8

Q ss_pred             CCEEEEEcCCCCCCC-----------CcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEE
Q 038320           78 GKVVQLKLRSPEIPD-----------SFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN  146 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~-----------~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  146 (467)
                      .+++.++++++.+..           .+.+++++|.+++..+..+..+++|++|++++|.+++. .|..++++++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc-ChhHccccCCCCEEE
Confidence            357777777643322           24455555666655455677777777777777777654 446677777777777


Q ss_pred             cCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCC----------
Q 038320          147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM----------  216 (467)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~----------  216 (467)
                      +++|.+++..|..+.++++|++|++++|.++.++...+. ...+++|++|++++|.+++..+.....+..          
T Consensus       128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD-IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG-GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred             CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh-ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence            777777766666677777777777777776655443221 224567777777777766654432222211          


Q ss_pred             --------------CCCCCEEECCCCcCcccCCccccCCCC--CcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccc
Q 038320          217 --------------LPSLSELHLPACGLFEFPPLSVVNFSS--LLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG  280 (467)
Q Consensus       217 --------------l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  280 (467)
                                    .++|++|++++|.+.+..+..+..++.  |++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence                          245666666666666666666655543  7777777777766666666777777777777777666


Q ss_pred             ccchhhhCCCCCCEEeCC---------------------------------CCCCCCCCCcccccCCCCCCEEeccCCcC
Q 038320          281 NIPDAFANMTSLRELDLS---------------------------------ENSLIGGQIPKDLGSLCNLWDLDLSGNDL  327 (467)
Q Consensus       281 ~~~~~l~~l~~L~~L~L~---------------------------------~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  327 (467)
                      ..|..+.++++|++|+++                                 +|.+ .+..+..+..+++|++|++++|.+
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCch
Confidence            555555555555555554                                 4444 333344445555555555554443


Q ss_pred             CCchh--hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccc-ccccCCCCCCEEECcCCcC
Q 038320          328 DGEII--EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP-ESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       328 ~~~~~--~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l  404 (467)
                      .....  ..+...   ..++|+.|++++|++++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++
T Consensus       366 ~~~~l~~~~f~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  442 (680)
T 1ziw_A          366 SLRTLTNETFVSL---AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY  442 (680)
T ss_dssp             CCCEECTTTTGGG---TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred             hhhhcchhhhccc---ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence            21110  000000   11245666666666665556666666666666666666665444 3455555555555555554


Q ss_pred             c--------------------------ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          405 D--------------------------GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       405 ~--------------------------~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      +                          +.+|..+..+++|++|++++|++++..+. .|..+++|+.|++++|+++.
T Consensus       443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~  518 (680)
T 1ziw_A          443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLAR  518 (680)
T ss_dssp             EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGG
T ss_pred             ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccc
Confidence            3                          34566667777777777777777765555 67777788888888887653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-38  Score=336.15  Aligned_cols=330  Identities=20%  Similarity=0.213  Sum_probs=280.6

Q ss_pred             ccCcccc--CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc-CCC-CCCccCCC-------CCcCCeeeccCc
Q 038320          106 EISPSVL--DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS-FAG-NIPPSFGN-------LSSLQILDLNTF  174 (467)
Q Consensus       106 ~~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~-------l~~L~~L~l~~n  174 (467)
                      .+|..++  ++++|++|+|++|.+.+. +|..++++++|++|++++|+ +++ .+|..+++       +++|++|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            5999988  999999999999999887 99999999999999999998 887 78875554       459999999999


Q ss_pred             cCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCC-CcEEEccCCc
Q 038320          175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSS-LLFLDLSSND  253 (467)
Q Consensus       175 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~  253 (467)
                      .++.+|.  ...+.++++|+.|++++|.++..    + .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.
T Consensus       559 ~L~~ip~--~~~l~~L~~L~~L~Ls~N~l~~l----p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          559 NLEEFPA--SASLQKMVKLGLLDCVHNKVRHL----E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             CCCBCCC--HHHHTTCTTCCEEECTTSCCCBC----C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             cCCccCC--hhhhhcCCCCCEEECCCCCcccc----h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            9997776  01289999999999999999833    2 7888999999999999999 66778999999 9999999999


Q ss_pred             CCCCcchhccCCCC--CCEEeccCCccccccchh---hh--CCCCCCEEeCCCCCCCCCCCcccc-cCCCCCCEEeccCC
Q 038320          254 FNSSIPQWLLNISK--LAHLDLSANNLQGNIPDA---FA--NMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGN  325 (467)
Q Consensus       254 l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~---l~--~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~l~~n  325 (467)
                      ++ .+|..+..++.  |+.|++++|.+.+.+|..   +.  .+++|+.|++++|.+ . .+|..+ ..+++|+.|++++|
T Consensus       631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~-~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-Q-KFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-C-SCCHHHHHTTCCCSEEECCSC
T ss_pred             CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-C-ccCHHHHccCCCCCEEECCCC
Confidence            98 78888876654  999999999998866532   22  345899999999999 4 566654 58999999999999


Q ss_pred             cCCCchhhHHHhhh---cccCCCccEEECcCCCCCcCCCcccc--CCCCCCEEEccCCcCcccccccccCCCCCCEEECc
Q 038320          326 DLDGEIIEFVDRLS---KCANSSLESLDLGQNNLGGFLPNSLG--QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH  400 (467)
Q Consensus       326 ~l~~~~~~~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls  400 (467)
                      .++ .+|..+....   ...+++|+.|++++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|+|+
T Consensus       708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence            998 4444332211   011227999999999999 6788887  99999999999999997 89899999999999997


Q ss_pred             C------CcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          401 N------NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       401 ~------n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      +      |.+.+.+|..+..+++|+.|++++|++ +.+|. .+.  ++|+.|+|++|++.
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~-~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE-KLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--SSSCEEECCSCTTC
T ss_pred             CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH-hhc--CCCCEEECCCCCCC
Confidence            6      788889999999999999999999999 78888 443  79999999999886

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=334.40  Aligned_cols=315  Identities=22%  Similarity=0.212  Sum_probs=219.3

Q ss_pred             CCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEE
Q 038320           66 CKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYL  145 (467)
Q Consensus        66 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  145 (467)
                      |.|.+|.+  ...+++.+++++             |.+++..+..+.++++|++|+|++|...+...|..++++++|++|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~-------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF-------------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES-------------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             CCCCCCCC--CCCCcCEEECCC-------------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            45666665  456788888888             777777777888888888888888865544236778888888888


Q ss_pred             EcCCCcCCCCCCccCCCCCcCCeeeccCccCCCC-CCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEE
Q 038320          146 NLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL-ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH  224 (467)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l-~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~  224 (467)
                      ++++|.+.+..|..|.++++|++|++++|.++.. +..  ..+.++++|++|++++|.+++..+  ...+.++++|++|+
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSID  154 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEE
T ss_pred             ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCccccccc--chhHhhCCCCCEEE
Confidence            8888888877788888888888888888877642 221  126778888888888888876542  13567788888888


Q ss_pred             CCCCcCcccCCccccCC--CCCcEEEccCCcCCCCcchhccCCCC------CCEEeccCCccccccchhhhC--------
Q 038320          225 LPACGLFEFPPLSVVNF--SSLLFLDLSSNDFNSSIPQWLLNISK------LAHLDLSANNLQGNIPDAFAN--------  288 (467)
Q Consensus       225 l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~--------  288 (467)
                      +++|.+.+..+..+..+  ++|+.|++++|.+.+..|..+..+++      |+.|++++|.+.+..+..+..        
T Consensus       155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~  234 (844)
T 3j0a_A          155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF  234 (844)
T ss_dssp             EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred             CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence            88888877777666665  67777777777777666655555444      777777777655443332221        


Q ss_pred             ------------------------------CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhh
Q 038320          289 ------------------------------MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRL  338 (467)
Q Consensus       289 ------------------------------l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~  338 (467)
                                                    .++|+.|++++|.+ .+..+..+..+++|+.|++++|.+++..+..+..+
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  313 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL  313 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred             ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence                                          25677777777776 55556666777777777777777776666555554


Q ss_pred             hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320          339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      .     +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       314 ~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          314 D-----NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             S-----SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             C-----CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            4     6777777777777666667777777777777777776555556666777777777776665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-36  Score=304.15  Aligned_cols=333  Identities=27%  Similarity=0.282  Sum_probs=283.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCC-CccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNI-PPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL  193 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L  193 (467)
                      ++|++|+|++|.+++. .|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.++.+.+..   +.++++|
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA---FNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT---TTTCTTC
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh---ccCcccC
Confidence            7899999999999875 6889999999999999999997655 567999999999999999998775443   7889999


Q ss_pred             CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc-ccCCCCCcEEEccCCcCCCCcchhccCC--CCCCE
Q 038320          194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS-VVNFSSLLFLDLSSNDFNSSIPQWLLNI--SKLAH  270 (467)
Q Consensus       194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~  270 (467)
                      ++|++++|.+++..+. ...+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+  .+|+.
T Consensus       106 ~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            9999999998864311 123788999999999999999987765 8899999999999999998888877765  78999


Q ss_pred             EeccCCccccccchh--------hhCCCCCCEEeCCCCCCCCCCCcccccC---CCCCCEEeccCCcCCCchh-------
Q 038320          271 LDLSANNLQGNIPDA--------FANMTSLRELDLSENSLIGGQIPKDLGS---LCNLWDLDLSGNDLDGEII-------  332 (467)
Q Consensus       271 L~l~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~l~~---l~~L~~L~l~~n~l~~~~~-------  332 (467)
                      |++++|.+.+..+..        +..+++|++|++++|.+ .+..+..+..   .++|+.|++++|...+...       
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  263 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD  263 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCCcc-cccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence            999999998654433        23568899999999998 6666665543   3789999999886554321       


Q ss_pred             ---hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccCh
Q 038320          333 ---EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIP  409 (467)
Q Consensus       333 ---~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p  409 (467)
                         ..+..   ...++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|
T Consensus       264 ~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          264 PDNFTFKG---LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             CCTTTTGG---GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             Cccccccc---ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence               11111   123489999999999999999999999999999999999998888899999999999999999998889


Q ss_pred             hhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320          410 KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       410 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                      ..+..+++|++|++++|++++..+. .|..+++|+.|++++|+|+..+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCC
T ss_pred             hHhcCcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCC
Confidence            9999999999999999999988887 7999999999999999888644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-37  Score=308.14  Aligned_cols=313  Identities=20%  Similarity=0.180  Sum_probs=271.2

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320          106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE  185 (467)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~  185 (467)
                      .+|..+  .+++++|+|++|++++. .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.++...  
T Consensus        25 ~ip~~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--   99 (477)
T 2id5_A           25 AVPEGI--PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV--   99 (477)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS--
T ss_pred             cCCCCC--CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc--
Confidence            345444  35899999999999875 6788999999999999999999888899999999999999999999888754  


Q ss_pred             hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 038320          186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI  265 (467)
Q Consensus       186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  265 (467)
                       +.++++|++|++++|.+....+   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++
T Consensus       100 -~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (477)
T 2id5_A          100 -FTGLSNLTKLDISENKIVILLD---YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL  175 (477)
T ss_dssp             -STTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred             -ccCCCCCCEEECCCCccccCCh---hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence             6789999999999999987753   367889999999999999999888889999999999999999987777788899


Q ss_pred             CCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCC
Q 038320          266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS  345 (467)
Q Consensus       266 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~  345 (467)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.. .+.++.......+|+.|++++|.+++..+..+..++     +
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~  249 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-----Y  249 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT-CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-----T
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc-ccccCcccccCccccEEECcCCcccccCHHHhcCcc-----c
Confidence            9999999999999887777889999999999999887 566666666667899999999999876666666665     8


Q ss_pred             ccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcC
Q 038320          346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG  425 (467)
Q Consensus       346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  425 (467)
                      |+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            99999999999888778888999999999999999988888899999999999999999877777788899999999999


Q ss_pred             CCCcccCC
Q 038320          426 NPWIGLVT  433 (467)
Q Consensus       426 n~~~~~~~  433 (467)
                      |++.....
T Consensus       330 N~l~c~c~  337 (477)
T 2id5_A          330 NPLACDCR  337 (477)
T ss_dssp             SCEECSGG
T ss_pred             CCccCccc
Confidence            99876544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=304.06  Aligned_cols=319  Identities=20%  Similarity=0.183  Sum_probs=266.5

Q ss_pred             ccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCC
Q 038320          100 TYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL  179 (467)
Q Consensus       100 ~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l  179 (467)
                      +|.+++..+..+.++++|++|+|++|.+++. .|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+..+
T Consensus        41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  119 (477)
T 2id5_A           41 KNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL  119 (477)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred             CCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence            3888888888999999999999999999875 688899999999999999999865556789999999999999998876


Q ss_pred             CCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc
Q 038320          180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP  259 (467)
Q Consensus       180 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  259 (467)
                      ....   +.++++|++|++++|.+....+   ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus       120 ~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          120 LDYM---FQDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             CTTT---TTTCTTCCEEEECCTTCCEECT---TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             ChhH---ccccccCCEEECCCCccceeCh---hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            5543   7889999999999999887653   367889999999999999998888888999999999999999988777


Q ss_pred             hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      ..+..+++|+.|++++|...+.++.......+|+.|++++|.+ .+..+..+..+++|+.|++++|.+++..+..+..+.
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            7888999999999999988888887777777999999999998 444445788999999999999999877776666655


Q ss_pred             cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChh-hhcCCCCC
Q 038320          340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK-SLGKLSHL  418 (467)
Q Consensus       340 ~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L  418 (467)
                           +|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+...-.. ++  ...+
T Consensus       273 -----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~  345 (477)
T 2id5_A          273 -----RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRR  345 (477)
T ss_dssp             -----TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--HTTT
T ss_pred             -----cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--Hhhh
Confidence                 899999999999988889999999999999999999977777788999999999999998754321 11  1223


Q ss_pred             CEEeCcCCCCcccCC
Q 038320          419 VVLDISGNPWIGLVT  433 (467)
Q Consensus       419 ~~L~l~~n~~~~~~~  433 (467)
                      ..+.+.++......|
T Consensus       346 ~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          346 WRLNFNRQQPTCATP  360 (477)
T ss_dssp             TSSCCTTCCCBEEES
T ss_pred             hccccCccCceeCCc
Confidence            334455555443333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=330.12  Aligned_cols=355  Identities=25%  Similarity=0.226  Sum_probs=229.8

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCccccccccc-CccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEI-SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNI  156 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  156 (467)
                      ..++.|++++             |...+.+ |..+.++++|++|+|++|.+++. .|..++++++|++|++++|.+++.+
T Consensus        48 ~~L~~LdLs~-------------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~  113 (844)
T 3j0a_A           48 EQLQLLELGS-------------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAV  113 (844)
T ss_dssp             CSCSEEEECT-------------TCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred             ccCeEEeCCC-------------CCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCccc
Confidence            3566677766             5555555 56677788888888888777765 6777777888888888888777655


Q ss_pred             Ccc--CCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh---------------------
Q 038320          157 PPS--FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA---------------------  213 (467)
Q Consensus       157 p~~--l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~---------------------  213 (467)
                      |..  +.++++|++|++++|.+..++..  ..+.++++|++|++++|.+++..+.....                     
T Consensus       114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          114 LKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             STTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred             ccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence            554  77778888888887777665432  12677777777777777776654332211                     


Q ss_pred             --cCCCC------CCCEEECCCCcCcccCCccccC--------------------------------------CCCCcEE
Q 038320          214 --TNMLP------SLSELHLPACGLFEFPPLSVVN--------------------------------------FSSLLFL  247 (467)
Q Consensus       214 --~~~l~------~L~~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L  247 (467)
                        +..++      .|+.|++++|.+.+..+..+..                                      .++|+.|
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L  271 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL  271 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred             cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence              11222      2777777777665443322211                                      2578888


Q ss_pred             EccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcC
Q 038320          248 DLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL  327 (467)
Q Consensus       248 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  327 (467)
                      ++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+ ++..+..+..+++|+.|++++|.+
T Consensus       272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i  350 (844)
T 3j0a_A          272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHI  350 (844)
T ss_dssp             ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCCEEECCSCCC
T ss_pred             ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCCEEECCCCCC
Confidence            8888888777777788888888888888888877788888888888888888888 666677888888888888888888


Q ss_pred             CCchhhHHHhhhcccCCCccEEECcCCCCCcCC------------------C----------------------ccccCC
Q 038320          328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL------------------P----------------------NSLGQL  367 (467)
Q Consensus       328 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~------------------~----------------------~~l~~l  367 (467)
                      .+..+..+..++     +|++|++++|.+++..                  |                      ..+..+
T Consensus       351 ~~~~~~~~~~l~-----~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l  425 (844)
T 3j0a_A          351 AIIQDQTFKFLE-----KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV  425 (844)
T ss_dssp             CCCCSSCSCSCC-----CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred             CccChhhhcCCC-----CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence            776665554444     6777777777665321                  0                      012356


Q ss_pred             CCCCEEEccCCcCcccccc-cccCCCCCCEEECcCCcCc-----ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320          368 ENLKILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNLMD-----GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  441 (467)
                      ++|++|++++|.+++..+. .+..+++|+.|++++|.++     +..+..+..+++|++|+|++|++++..+. .|..++
T Consensus       426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~  504 (844)
T 3j0a_A          426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG-VFSHLT  504 (844)
T ss_dssp             TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT-SSSSCC
T ss_pred             CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh-Hccchh
Confidence            6677777777766643222 1223444444444444443     22233344555555566666555554444 455666


Q ss_pred             CCCEEeccCCCCCC
Q 038320          442 NLKELHIAKYSLAP  455 (467)
Q Consensus       442 ~L~~l~l~~n~i~~  455 (467)
                      +|+.|+|++|+|+.
T Consensus       505 ~L~~L~Ls~N~l~~  518 (844)
T 3j0a_A          505 ALRGLSLNSNRLTV  518 (844)
T ss_dssp             SCSEEEEESCCCSS
T ss_pred             hhheeECCCCCCCc
Confidence            66666666665553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.8e-36  Score=314.53  Aligned_cols=351  Identities=26%  Similarity=0.213  Sum_probs=249.2

Q ss_pred             CEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCc
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP  158 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  158 (467)
                      .++.|+|++             |.+++..+.+|.++++|++|+|++|++++. .+..|.++++|++|+|++|++++..+.
T Consensus        53 ~~~~LdLs~-------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           53 STKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             TCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CCCEEEeeC-------------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            466666666             888877777888888888888888888754 556788888888888888888765556


Q ss_pred             cCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccc
Q 038320          159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSV  238 (467)
Q Consensus       159 ~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  238 (467)
                      .|.++++|++|++++|.++.++...   ++++++|++|++++|.+.....  +..+..+++|++|++++|++.+..+..+
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeeccccCccccCCC--chhhccchhhhhhcccCccccccccccc
Confidence            6788888888888888888777654   6778888888888888765431  2355667788888888877655443322


Q ss_pred             cCC-----------------------------------------------------------------------------
Q 038320          239 VNF-----------------------------------------------------------------------------  241 (467)
Q Consensus       239 ~~l-----------------------------------------------------------------------------  241 (467)
                      ..+                                                                             
T Consensus       194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~  273 (635)
T 4g8a_A          194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS  273 (635)
T ss_dssp             HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred             cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence            211                                                                             


Q ss_pred             ------------------------------------------------------CCCcEEEccCCcCCCCcc--------
Q 038320          242 ------------------------------------------------------SSLLFLDLSSNDFNSSIP--------  259 (467)
Q Consensus       242 ------------------------------------------------------~~L~~L~l~~n~l~~~~~--------  259 (467)
                                                                            ..++.|++.+|.+.+..+        
T Consensus       274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~  353 (635)
T 4g8a_A          274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR  353 (635)
T ss_dssp             TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred             ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence                                                                  122223332222211100        


Q ss_pred             -----------hhccCCCCCCEEeccCCcccc--ccchhhhCCCCCCEEeCCCCC-----------------------CC
Q 038320          260 -----------QWLLNISKLAHLDLSANNLQG--NIPDAFANMTSLRELDLSENS-----------------------LI  303 (467)
Q Consensus       260 -----------~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~-----------------------l~  303 (467)
                                 .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.                       ..
T Consensus       354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred             cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence                       011235677788888777642  234444455555555555443                       31


Q ss_pred             CCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC-cCCCccccCCCCCCEEEccCCcCcc
Q 038320          304 GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-GFLPNSLGQLENLKILQLWGNLFRG  382 (467)
Q Consensus       304 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~  382 (467)
                      .......+..+++++.++++.|.+.+..+..+....     +++.|++++|.+. +..|..+..+++|++|++++|++++
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-----~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-----TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             ccccccccccccccccccccccccccccccccccch-----hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence            222233456667777777777777666655555544     8999999998744 4567888999999999999999998


Q ss_pred             cccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC-CCCCEEeccCCCCC
Q 038320          383 SIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL-KNLKELHIAKYSLA  454 (467)
Q Consensus       383 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~l~l~~n~i~  454 (467)
                      ..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++++..|. .|..+ ++|+.|+|++|++.
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCTTCCEEECTTCCBC
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhCcCCEEEeeCCCCc
Confidence            8888899999999999999999988888899999999999999999988887 78777 57999999999665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.7e-35  Score=284.21  Aligned_cols=307  Identities=24%  Similarity=0.354  Sum_probs=246.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      +..+++|++|+++++.+..  ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.++     .+..+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-----~~~~l  109 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-----ALQNL  109 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-----GGTTC
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-----HHcCC
Confidence            3467788888888888763  44 36778888888888888873 444 788888888888888877653     27888


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      ++|++|++++|.+....     .+..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.
T Consensus       110 ~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          110 TNLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             TTCSEEECTTSCCCCCG-----GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             CcCCEEECcCCcccCch-----hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            88888888888887654     37788889999998886655544 37888999999999998875443  778899999


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEE
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD  350 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~  350 (467)
                      |++++|.+.+..+  +..+++|+.+++++|.+ .+..+  +..+++|++|++++|.+++..+  +..+     ++|++|+
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l-----~~L~~L~  249 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQI-TDITP--VANMTRLNSLKIGNNKITDLSP--LANL-----SQLTWLE  249 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEE
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCC-CCCch--hhcCCcCCEEEccCCccCCCcc--hhcC-----CCCCEEE
Confidence            9999998875433  78899999999999988 43332  7788999999999999887554  4444     3899999


Q ss_pred             CcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcc
Q 038320          351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG  430 (467)
Q Consensus       351 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~  430 (467)
                      +++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            999998864  5688999999999999999854  457889999999999999998899999999999999999999988


Q ss_pred             cCChhhhCCCCCCCEEeccCCCCC
Q 038320          431 LVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       431 ~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ..|   +..+++|+.|++++|+|+
T Consensus       326 ~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          326 IRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CGG---GGGCTTCSEESSSCC---
T ss_pred             ccC---hhhhhccceeehhhhccc
Confidence            765   567899999999999775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7e-36  Score=293.03  Aligned_cols=309  Identities=22%  Similarity=0.229  Sum_probs=218.8

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320          113 DLKHLNYLDLSLNNFRGSRIPN-FLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS  191 (467)
Q Consensus       113 ~l~~L~~L~L~~n~i~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~  191 (467)
                      .++++++|+++++.++.  +|. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+++..   +.+++
T Consensus        43 ~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT
T ss_pred             ccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH---hcCCC
Confidence            45677777777777663  443 4566777777777777777656667777777777777777777665543   56777


Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL  271 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  271 (467)
                      +|++|++++|.++....   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|
T Consensus       118 ~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L  191 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA  191 (390)
T ss_dssp             TCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred             CCCEEECCCCccCcCCH---HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccccccee
Confidence            77788887777775542   2356677788888888887777777777778888888888877643   24556778888


Q ss_pred             eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEEC
Q 038320          272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL  351 (467)
Q Consensus       272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L  351 (467)
                      ++++|.+++.     ...++|+.|++++|.+ . .++.  ...++|+.|++++|.+++.  ..+..++     +|++|++
T Consensus       192 ~l~~n~l~~~-----~~~~~L~~L~l~~n~l-~-~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L~L  255 (390)
T 3o6n_A          192 NVSYNLLSTL-----AIPIAVEELDASHNSI-N-VVRG--PVNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDL  255 (390)
T ss_dssp             ECCSSCCSEE-----ECCSSCSEEECCSSCC-C-EEEC--CCCSSCCEEECCSSCCCCC--GGGGGCT-----TCSEEEC
T ss_pred             eccccccccc-----CCCCcceEEECCCCee-e-eccc--cccccccEEECCCCCCccc--HHHcCCC-----CccEEEC
Confidence            8887776632     3345778888888877 2 2232  2346788888888887763  3344443     7888888


Q ss_pred             cCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320          352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       352 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      ++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence            8888887777778888888888888888774 5555667788888888888876 5666677778888888888887654


Q ss_pred             CChhhhCCCCCCCEEeccCCCCC
Q 038320          432 VTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       432 ~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      .    +..+++|+.|++++|++.
T Consensus       334 ~----~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          334 K----LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             C----CCTTCCCSEEECCSSCEE
T ss_pred             C----chhhccCCEEEcCCCCcc
Confidence            2    456778888888888553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.9e-35  Score=293.72  Aligned_cols=312  Identities=25%  Similarity=0.381  Sum_probs=250.9

Q ss_pred             cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320          101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE  180 (467)
Q Consensus       101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~  180 (467)
                      +.+++..+  +..+++|++|++++|.+.+.  +. ++++++|++|++++|.+.+ ++. +.++++|++|++++|.+..++
T Consensus        78 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~  150 (466)
T 1o6v_A           78 NQLTDITP--LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDIS  150 (466)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCG
T ss_pred             CccCCchh--hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCCCh
Confidence            66665543  77788888888888877743  33 7778888888888887774 333 777888888888888776653


Q ss_pred             CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320          181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ  260 (467)
Q Consensus       181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  260 (467)
                      .     +..+++|++|+++ +.+...     ..+..+++|++|++++|.+.+..  .+..+++|++|++++|.+.+..+ 
T Consensus       151 ~-----~~~l~~L~~L~l~-~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          151 A-----LSGLTSLQQLSFG-NQVTDL-----KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP-  216 (466)
T ss_dssp             G-----GTTCTTCSEEEEE-ESCCCC-----GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             h-----hccCCcccEeecC-CcccCc-----hhhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc-
Confidence            2     6778888888875 344333     24788999999999999987753  47889999999999999987655 


Q ss_pred             hccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320          261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK  340 (467)
Q Consensus       261 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  340 (467)
                       +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+ .+..+  +..+++|+.|++++|.+++..+  +..+  
T Consensus       217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l--  286 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI-SNLAP--LSGLTKLTELKLGANQISNISP--LAGL--  286 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC--
T ss_pred             -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc-ccchh--hhcCCCCCEEECCCCccCcccc--ccCC--
Confidence             67789999999999998853  4578899999999999998 44433  7889999999999999987654  4444  


Q ss_pred             ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCE
Q 038320          341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV  420 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  420 (467)
                         ++|++|++++|++++..+  +..+++|++|++++|.+++..|  +..+++|++|++++|++++.  ..+..+++|+.
T Consensus       287 ---~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  357 (466)
T 1o6v_A          287 ---TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW  357 (466)
T ss_dssp             ---TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             ---CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence               489999999999987644  7889999999999999997665  67899999999999999865  47889999999


Q ss_pred             EeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          421 LDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       421 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      |++++|++++..|   +..+++|+.|++++|+++.
T Consensus       358 L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          358 LSAGHNQISDLTP---LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred             EeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence            9999999988776   6789999999999997765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=309.18  Aligned_cols=335  Identities=27%  Similarity=0.235  Sum_probs=246.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      +++++|++++|.+++. .+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++.+++..   +.++++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~  103 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---FSGLSSLQ  103 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---TTTCTTCC
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh---hcCccccc
Confidence            4799999999999875 6678999999999999999999777888999999999999999998877554   78999999


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCC----C
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL----A  269 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~  269 (467)
                      +|++++|.++.....   .+..+++|++|++++|.+.+. .|..+.++++|++|++++|.+++..+..+..+++|    +
T Consensus       104 ~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          104 KLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             EEECTTSCCCCSTTC---SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred             cccccccccccCCCc---cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence            999999999887632   478999999999999999884 58889999999999999998876555444444443    3


Q ss_pred             EEeccCCcccccc-------------------------------------------------------------------
Q 038320          270 HLDLSANNLQGNI-------------------------------------------------------------------  282 (467)
Q Consensus       270 ~L~l~~n~l~~~~-------------------------------------------------------------------  282 (467)
                      .+++++|.+.+..                                                                   
T Consensus       181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            4444444332211                                                                   


Q ss_pred             --------------chhhhCCCCCCEEeCCCCCCCC--------------------CCCccc------------------
Q 038320          283 --------------PDAFANMTSLRELDLSENSLIG--------------------GQIPKD------------------  310 (467)
Q Consensus       283 --------------~~~l~~l~~L~~L~L~~n~l~~--------------------~~~~~~------------------  310 (467)
                                    +..+..+++|+.|++++|.+..                    ..+|..                  
T Consensus       261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred             hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence                          1122223333333333333200                    011110                  


Q ss_pred             --ccCCCCCCEEeccCCcCCCch--hhHHHhhh------------------cccCCCccEEECcCCCCCcCCC-ccccCC
Q 038320          311 --LGSLCNLWDLDLSGNDLDGEI--IEFVDRLS------------------KCANSSLESLDLGQNNLGGFLP-NSLGQL  367 (467)
Q Consensus       311 --l~~l~~L~~L~l~~n~l~~~~--~~~l~~~~------------------~~~~~~L~~L~L~~n~i~~~~~-~~l~~l  367 (467)
                        ...+++|+.|++++|.+++..  +..+..++                  ...+++|++|++++|.+++..+ ..+..+
T Consensus       341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence              034566777777777666443  33333322                  1123467777777777766544 467788


Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc-ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEE
Q 038320          368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD-GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL  446 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l  446 (467)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|. .|..+++|+.|
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L  499 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVL  499 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCCEE
Confidence            88888888888888878888888899999999999887 56888888899999999999998887777 78889999999


Q ss_pred             eccCCCCCCCc
Q 038320          447 HIAKYSLAPRL  457 (467)
Q Consensus       447 ~l~~n~i~~~~  457 (467)
                      ++++|+++..+
T Consensus       500 ~l~~n~l~~~~  510 (570)
T 2z63_A          500 NMASNQLKSVP  510 (570)
T ss_dssp             ECCSSCCSCCC
T ss_pred             eCCCCcCCCCC
Confidence            99999776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.7e-35  Score=291.55  Aligned_cols=325  Identities=27%  Similarity=0.355  Sum_probs=275.4

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++.+             +.+.. +| .+..+++|++|++++|.+++.  +. +.++++|++|++++|.+.+.. 
T Consensus        46 ~~l~~L~l~~-------------~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~-  106 (466)
T 1o6v_A           46 DQVTTLQADR-------------LGIKS-ID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADIT-  106 (466)
T ss_dssp             HTCCEEECCS-------------SCCCC-CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred             ccccEEecCC-------------CCCcc-Cc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccCh-
Confidence            4688888887             44443 33 478899999999999999854  44 899999999999999998544 


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                      . +.++++|++|++++|.++.++.     +.++++|++|++++|.+.+..     .+..+++|++|+++ +.+.+..  .
T Consensus       107 ~-~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~-~~~~~~~--~  172 (466)
T 1o6v_A          107 P-LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFG-NQVTDLK--P  172 (466)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCG-----GGTTCTTCSEEEEE-ESCCCCG--G
T ss_pred             h-hcCCCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCCh-----hhccCCcccEeecC-CcccCch--h
Confidence            4 8999999999999999887653     789999999999999988753     57889999999996 5555443  3


Q ss_pred             ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320          238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL  317 (467)
Q Consensus       238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  317 (467)
                      +.++++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  ++.+++|+.|++++|.+ .+ + ..+..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~-~-~~l~~l~~L  245 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KD-I-GTLASLTNL  245 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CC-C-GGGGGCTTC
T ss_pred             hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc-cc-c-hhhhcCCCC
Confidence            88999999999999998754  347899999999999999987655  77899999999999998 33 3 467889999


Q ss_pred             CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      +.|++++|.+++..+  +..+     ++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|
T Consensus       246 ~~L~l~~n~l~~~~~--~~~l-----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          246 TDLDLANNQISNLAP--LSGL-----TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTC-----TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             CEEECCCCccccchh--hhcC-----CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            999999999988655  4444     499999999999997644  8899999999999999996544  7899999999


Q ss_pred             ECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCcc
Q 038320          398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLT  458 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~  458 (467)
                      ++++|++++..|  +..+++|++|++++|++++.  . .+..+++|+.|++++|++++...
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S-SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--h-hhccCCCCCEEeCCCCccCccch
Confidence            999999997766  78999999999999999875  3 68899999999999998876553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-34  Score=288.48  Aligned_cols=333  Identities=20%  Similarity=0.207  Sum_probs=269.1

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++++             +.+++. | .+..+++|++|++++|.+++.  |  ++.+++|++|++++|.+++ ++
T Consensus        42 ~~L~~L~Ls~-------------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~-~~  101 (457)
T 3bz5_A           42 ATLTSLDCHN-------------SSITDM-T-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTN-LD  101 (457)
T ss_dssp             TTCCEEECCS-------------SCCCCC-T-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSC-CC
T ss_pred             CCCCEEEccC-------------CCcccC-h-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCce-ee
Confidence            5688888888             777764 4 689999999999999999863  4  8899999999999999986 44


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                        ++++++|++|++++|.++.++      +..+++|++|++++|.+++.      .+..+++|++|++++|...+..  .
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l------~l~~l~~L~~L~l~~n~~~~~~--~  165 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEI------DVSHNTQLTELDCHLNKKITKL--D  165 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCC------CCTTCTTCCEEECTTCSCCCCC--C
T ss_pred             --cCCCCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCcccee------ccccCCcCCEEECCCCCccccc--c
Confidence              889999999999999998763      78899999999999999885      3678999999999999665554  4


Q ss_pred             ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320          238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL  317 (467)
Q Consensus       238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  317 (467)
                      +..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|++|++++|++ ++ +|  +..+++|
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~-ip--~~~l~~L  235 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TE-ID--VTPLTQL  235 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SC-CC--CTTCTTC
T ss_pred             cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-cc-cC--ccccCCC
Confidence            7789999999999999986 44  78899999999999999865   378899999999999999 44 55  7899999


Q ss_pred             CEEeccCCcCCCchhhHHHhhhc--ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccccc--------
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSK--CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES--------  387 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~--~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------  387 (467)
                      +.|++++|.+++..+..+..+..  ....+|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|..        
T Consensus       236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            99999999999865443332211  111245666666666665555  467899999999999887776642        


Q ss_pred             ccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhh----------CCCCCCCEEeccCCCCCCCc
Q 038320          388 IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHF----------SKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       388 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~----------~~l~~L~~l~l~~n~i~~~~  457 (467)
                      +..+++|++|++++|++++. +  +..+++|+.|++++|++++...-..+          ..+..|+.+++++|      
T Consensus       314 l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N------  384 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN------  384 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTT------
T ss_pred             hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccC------
Confidence            55678999999999999974 3  88999999999999999873111001          12245778899999      


Q ss_pred             cEEEecCCCC
Q 038320          458 TLVFNVSPEW  467 (467)
Q Consensus       458 ~~~g~~p~~~  467 (467)
                      .++|.||++|
T Consensus       385 ~l~g~ip~~~  394 (457)
T 3bz5_A          385 SLTIAVSPDL  394 (457)
T ss_dssp             BEEEECCTTC
T ss_pred             cEEEEcChhH
Confidence            8999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1e-35  Score=305.84  Aligned_cols=324  Identities=23%  Similarity=0.314  Sum_probs=256.6

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCC-CC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NI  156 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~  156 (467)
                      .+++.+++++             |.+++..|..+..+++|++|++++|.++  .+|..  .+++|++|++++|.+++ .+
T Consensus        76 ~~L~~L~Ls~-------------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~  138 (562)
T 3a79_B           76 SELRVLRLSH-------------NRIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPV  138 (562)
T ss_dssp             TTCCEEECCS-------------CCCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred             CCccEEECCC-------------CCCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCEEECCCCCccccCc
Confidence            3566777766             8999988999999999999999999998  47776  79999999999999986 45


Q ss_pred             CccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCC--CCCCCchhhhcC-------------------
Q 038320          157 PPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDL--SKAGSSWVQATN-------------------  215 (467)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~--~~~~~~~~~~~~-------------------  215 (467)
                      |..++++++|++|++++|.++..   .+..+.++ +|++|++++|.+  ++..+.....+.                   
T Consensus       139 p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~  214 (562)
T 3a79_B          139 CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN  214 (562)
T ss_dssp             CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred             hHhhcccCcccEEecCCCccccC---chhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence            68899999999999999998752   22223344 449999999998  544332221111                   


Q ss_pred             ----C-------------------------------------------------------CCCCCEEECCCCcCcccCCc
Q 038320          216 ----M-------------------------------------------------------LPSLSELHLPACGLFEFPPL  236 (467)
Q Consensus       216 ----~-------------------------------------------------------l~~L~~L~l~~n~~~~~~~~  236 (467)
                          .                                                       .++|++|++++|.+.+.+|.
T Consensus       215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~  294 (562)
T 3a79_B          215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR  294 (562)
T ss_dssp             EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred             hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence                0                                                       12677788888888776665


Q ss_pred             cc-----cCCC--------------------------CCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchh
Q 038320          237 SV-----VNFS--------------------------SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA  285 (467)
Q Consensus       237 ~l-----~~l~--------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  285 (467)
                      .+     ..++                          +|++|++++|.+....  ....+++|+.|++++|.+++..|..
T Consensus       295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence            54     3333                          3666666666654321  1267899999999999999988999


Q ss_pred             hhCCCCCCEEeCCCCCCCCC--CCcccccCCCCCCEEeccCCcCCCchhh-HHHhhhcccCCCccEEECcCCCCCcCCCc
Q 038320          286 FANMTSLRELDLSENSLIGG--QIPKDLGSLCNLWDLDLSGNDLDGEIIE-FVDRLSKCANSSLESLDLGQNNLGGFLPN  362 (467)
Q Consensus       286 l~~l~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n~i~~~~~~  362 (467)
                      +.++++|+.|++++|++ .+  .+|..+..+++|++|++++|.+++.+|. .+..+     ++|++|++++|++++..|.
T Consensus       373 ~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----ESILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             CCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC-----TTCCEEECCSSCCCGGGGS
T ss_pred             hcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc-----ccCCEEECCCCCCCcchhh
Confidence            99999999999999998 44  3456789999999999999999885543 33333     4899999999999987766


Q ss_pred             cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCEEeCcCCCCcccCCh
Q 038320          363 SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       363 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~  434 (467)
                      .+.  ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..+.
T Consensus       447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            554  79999999999998 78888889999999999999999 56665 89999999999999999986654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-35  Score=304.11  Aligned_cols=309  Identities=22%  Similarity=0.221  Sum_probs=209.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320          113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS  192 (467)
Q Consensus       113 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~  192 (467)
                      .+++++.+++++|.+... .+..+.++++|++|++++|.+.+..|..|..+++|++|++++|.++.+++..   ++++++
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~  124 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPL  124 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---HcCCCC
Confidence            356677777777766632 3334566777777777777777666666777777777777777776665543   566777


Q ss_pred             CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320          193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD  272 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  272 (467)
                      |++|++++|.++...+   ..+..+++|++|++++|.+.+.++..+..+++|++|++++|.+++..   +..+++|+.|+
T Consensus       125 L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~  198 (597)
T 3oja_B          125 LTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN  198 (597)
T ss_dssp             CCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred             CCEEEeeCCCCCCCCH---HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence            7777777777765542   23566777777777777777777777777777777777777776532   34567777777


Q ss_pred             ccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320          273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG  352 (467)
Q Consensus       273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  352 (467)
                      +++|.+.+     +...++|+.|++++|.+ . .++..  ..++|+.|++++|.+++.  ..+..++     +|+.|+++
T Consensus       199 l~~n~l~~-----l~~~~~L~~L~ls~n~l-~-~~~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~-----~L~~L~Ls  262 (597)
T 3oja_B          199 VSYNLLST-----LAIPIAVEELDASHNSI-N-VVRGP--VNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDLS  262 (597)
T ss_dssp             CCSSCCSE-----EECCTTCSEEECCSSCC-C-EEECS--CCSCCCEEECCSSCCCCC--GGGGGCT-----TCSEEECC
T ss_pred             cccCcccc-----ccCCchhheeeccCCcc-c-ccccc--cCCCCCEEECCCCCCCCC--hhhccCC-----CCCEEECC
Confidence            77776653     23445677777777776 2 22222  235777777777777762  3344443     77778887


Q ss_pred             CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320          353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      +|.+++..|..++.+++|++|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..
T Consensus       263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence            777777777777777778888888777774 4666666777888888877776 56666777777888888887776542


Q ss_pred             ChhhhCCCCCCCEEeccCCCC
Q 038320          433 TEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       433 ~~~~~~~l~~L~~l~l~~n~i  453 (467)
                          +..+++|+.|++++|++
T Consensus       341 ----~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          341 ----LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             ----CCTTCCCSEEECCSSCE
T ss_pred             ----hhhcCCCCEEEeeCCCC
Confidence                44567777788887754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-36  Score=304.68  Aligned_cols=322  Identities=25%  Similarity=0.297  Sum_probs=263.3

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCC-CC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NI  156 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~  156 (467)
                      .+++.+++++             |.+++..|..+..+++|++|++++|+++  .+|..  .+++|++|++++|.+++ .+
T Consensus        45 ~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~  107 (520)
T 2z7x_B           45 SKLRILIISH-------------NRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPI  107 (520)
T ss_dssp             TTCCEEECCS-------------SCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCC
T ss_pred             ccccEEecCC-------------CccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccc
Confidence            4677777777             8999988999999999999999999998  46766  79999999999999987 57


Q ss_pred             CccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC--CEEECCCcCC--CCCCCchhhhcC-----------------
Q 038320          157 PPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL--QYLNLEGVDL--SKAGSSWVQATN-----------------  215 (467)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L--~~L~L~~n~~--~~~~~~~~~~~~-----------------  215 (467)
                      |..++++++|++|++++|.++.   .   .+..+++|  ++|++++|.+  .+..+.....+.                 
T Consensus       108 p~~~~~l~~L~~L~L~~n~l~~---~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~  181 (520)
T 2z7x_B          108 CKEFGNMSQLKFLGLSTTHLEK---S---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI  181 (520)
T ss_dssp             CGGGGGCTTCCEEEEEESSCCG---G---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred             hhhhccCCcceEEEecCcccch---h---hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence            8899999999999999998865   1   25667777  9999999998  444332111111                 


Q ss_pred             ------------------------------------C---------------------------CCCCCEEECCCCcCcc
Q 038320          216 ------------------------------------M---------------------------LPSLSELHLPACGLFE  232 (467)
Q Consensus       216 ------------------------------------~---------------------------l~~L~~L~l~~n~~~~  232 (467)
                                                          .                           .++|++|++++|.+.+
T Consensus       182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  261 (520)
T 2z7x_B          182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG  261 (520)
T ss_dssp             CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred             hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence                                                1                           2268888888888887


Q ss_pred             cCCccc-----cCCCCCcEEEccCCcCCCCcc-hh-------------------------ccCCCCCCEEeccCCccccc
Q 038320          233 FPPLSV-----VNFSSLLFLDLSSNDFNSSIP-QW-------------------------LLNISKLAHLDLSANNLQGN  281 (467)
Q Consensus       233 ~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~-------------------------l~~l~~L~~L~l~~n~l~~~  281 (467)
                      ..|..+     ..+++|+.+++++|.+  .+| ..                         ...+++|+.|++++|.+++.
T Consensus       262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          262 QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred             ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence            777776     6777777777666665  233 11                         15789999999999999988


Q ss_pred             cchhhhCCCCCCEEeCCCCCCCCC--CCcccccCCCCCCEEeccCCcCCCchhhH-HHhhhcccCCCccEEECcCCCCCc
Q 038320          282 IPDAFANMTSLRELDLSENSLIGG--QIPKDLGSLCNLWDLDLSGNDLDGEIIEF-VDRLSKCANSSLESLDLGQNNLGG  358 (467)
Q Consensus       282 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~~~~~~L~~L~L~~n~i~~  358 (467)
                      .|..+..+++|++|++++|++ .+  .+|..+..+++|++|++++|.+++.+|.. +..+     ++|++|++++|++++
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-----~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-----KSLLSLNMSSNILTD  413 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-----TTCCEEECCSSCCCG
T ss_pred             hhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchhccC-----ccCCEEECcCCCCCc
Confidence            899999999999999999999 54  55677899999999999999999855543 3333     489999999999998


Q ss_pred             CCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCEEeCcCCCCcccCCh
Q 038320          359 FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       359 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~  434 (467)
                      ..|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+.
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            7776664  79999999999999 88888889999999999999998 56655 88999999999999999886653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.3e-35  Score=300.47  Aligned_cols=341  Identities=23%  Similarity=0.242  Sum_probs=231.8

Q ss_pred             cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320          101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE  180 (467)
Q Consensus       101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~  180 (467)
                      +.++ .+|..+.  ++|++|++++|++++. .|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.++.++
T Consensus        15 ~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           15 RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence            4554 4555443  7999999999999875 6788999999999999999999888889999999999999999998766


Q ss_pred             CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc-CcccCCccccCCCCCcEEEccCCcCCCCcc
Q 038320          181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG-LFEFPPLSVVNFSSLLFLDLSSNDFNSSIP  259 (467)
Q Consensus       181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  259 (467)
                      ...   +.++++|++|++++|.+++...  +..+..+++|++|++++|. +...++..+.++++|++|++++|.+++..|
T Consensus        91 ~~~---~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           91 SSW---FGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             HHH---HTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             HHH---hccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            543   7899999999999999986421  2367889999999999998 555555789999999999999999999899


Q ss_pred             hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCC--c-ccccCCCCCCEEeccCCcCCCchhhHHH
Q 038320          260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQI--P-KDLGSLCNLWDLDLSGNDLDGEIIEFVD  336 (467)
Q Consensus       260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~  336 (467)
                      ..+..+++|+.|++++|.+.......+..+++|++|++++|.+ .+..  + .....+++|+.|++++|.+++..+..+.
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL  244 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred             hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence            9999999999999999987643333346789999999999988 3321  1 1122344555555555544433222221


Q ss_pred             hhh----------------------------------------------------------cccCCCccEEECcCCCCCc
Q 038320          337 RLS----------------------------------------------------------KCANSSLESLDLGQNNLGG  358 (467)
Q Consensus       337 ~~~----------------------------------------------------------~~~~~~L~~L~L~~n~i~~  358 (467)
                      ...                                                          ....++|+.|++++|.++ 
T Consensus       245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-  323 (549)
T 2z81_A          245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-  323 (549)
T ss_dssp             GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred             HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence            100                                                          000124455555555544 


Q ss_pred             CCCccc-cCCCCCCEEEccCCcCcccccc---cccCCCCCCEEECcCCcCcccCh--hhhcCCCCCCEEeCcCCCCcccC
Q 038320          359 FLPNSL-GQLENLKILQLWGNLFRGSIPE---SIGNLSSLRELYLHNNLMDGTIP--KSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       359 ~~~~~l-~~l~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      .+|..+ ..+++|++|++++|.+++.+|.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  402 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM  402 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence            233333 3455666666666665554432   24455556666666665553321  33555556666666666555 34


Q ss_pred             ChhhhCCCCCCCEEeccCCCCC
Q 038320          433 TEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       433 ~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      |. .+..+++|+.|++++|+|+
T Consensus       403 p~-~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          403 PD-SCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CS-CCCCCTTCCEEECTTSCCS
T ss_pred             Ch-hhcccccccEEECCCCCcc
Confidence            44 3445555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-33  Score=271.93  Aligned_cols=303  Identities=25%  Similarity=0.363  Sum_probs=257.2

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      ..++.+++++             +.+.. ++ .+..+++|++|++++|.+++  ++. +.++++|++|++++|.+.+ ++
T Consensus        44 ~~L~~L~l~~-------------~~i~~-~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~  104 (347)
T 4fmz_A           44 ESITKLVVAG-------------EKVAS-IQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS  104 (347)
T ss_dssp             TTCSEEECCS-------------SCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG
T ss_pred             ccccEEEEeC-------------Ccccc-ch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch
Confidence            4688889887             55543 23 48889999999999999985  444 8999999999999999984 44


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                       .+.++++|++|++++|.+..++.     +..+++|++|++++|......    ..+..+++|++|++++|.+.+..+  
T Consensus       105 -~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~--  172 (347)
T 4fmz_A          105 -ALQNLTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDL----SPLSNMTGLNYLTVTESKVKDVTP--  172 (347)
T ss_dssp             -GGTTCTTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCC----GGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred             -HHcCCCcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCcccc----cchhhCCCCcEEEecCCCcCCchh--
Confidence             58999999999999999887654     789999999999999665543    358899999999999999987765  


Q ss_pred             ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320          238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL  317 (467)
Q Consensus       238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  317 (467)
                      +..+++|++|++++|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+ .+ .+. +..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l-~~-~~~-~~~l~~L  245 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI-TD-LSP-LANLSQL  245 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CC-CGG-GTTCTTC
T ss_pred             hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc-CC-Ccc-hhcCCCC
Confidence            7899999999999999985433  7889999999999999986544  88999999999999998 43 333 8899999


Q ss_pred             CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      ++|++++|.+++.  ..+..+     ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       246 ~~L~l~~n~l~~~--~~~~~l-----~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          246 TWLEIGTNQISDI--NAVKDL-----TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             CEEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             CEEECCCCccCCC--hhHhcC-----CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            9999999999874  234443     4999999999999875  568899999999999999998888999999999999


Q ss_pred             ECcCCcCcccChhhhcCCCCCCEEeCcCCCCc
Q 038320          398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI  429 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  429 (467)
                      ++++|++++..|  +..+++|++|++++|+++
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999997666  889999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-33  Score=277.26  Aligned_cols=319  Identities=20%  Similarity=0.176  Sum_probs=267.5

Q ss_pred             cCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccC
Q 038320           94 FTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT  173 (467)
Q Consensus        94 ~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (467)
                      +.+++.++.++...+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus        48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  126 (390)
T 3o6n_A           48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  126 (390)
T ss_dssp             SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eEEEecCCchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence            3344444666655555578999999999999999865 566899999999999999999988888899999999999999


Q ss_pred             ccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc
Q 038320          174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND  253 (467)
Q Consensus       174 n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  253 (467)
                      |.++.++...   +.++++|++|++++|.+.+..+   ..+..+++|++|++++|.+.+..   +..+++|+.|++++|.
T Consensus       127 n~l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          127 NDLSSLPRGI---FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             SCCCCCCTTT---TTTCTTCCEEECCSSCCCBCCT---TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             CccCcCCHHH---hcCCCCCcEEECCCCccCccCh---hhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence            9999888763   5789999999999999988763   36788999999999999998763   5678999999999998


Q ss_pred             CCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhh
Q 038320          254 FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE  333 (467)
Q Consensus       254 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  333 (467)
                      +++     +...++|+.|++++|.+... +.  ...++|+.|++++|.+ .+.  ..+..+++|+.|++++|.+++..+.
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l-~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             ccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCC-ccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence            864     33457899999999999854 33  2357999999999999 432  5788999999999999999988888


Q ss_pred             HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhc
Q 038320          334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG  413 (467)
Q Consensus       334 ~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~  413 (467)
                      .+..++     +|++|++++|++++ ++..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++. +  +.
T Consensus       267 ~~~~l~-----~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          267 PFVKMQ-----RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             GGTTCS-----SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             Hccccc-----cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence            877766     99999999999986 4566678999999999999998 6777788899999999999999854 3  67


Q ss_pred             CCCCCCEEeCcCCCCcccCChhhhCCCCCC
Q 038320          414 KLSHLVVLDISGNPWIGLVTEVHFSKLKNL  443 (467)
Q Consensus       414 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  443 (467)
                      .+++|+.|++++|++...-....+..++..
T Consensus       337 ~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~  366 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDCNSLRALFRNVARP  366 (390)
T ss_dssp             TTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred             hhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence            899999999999999876554345444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.4e-33  Score=276.52  Aligned_cols=306  Identities=22%  Similarity=0.201  Sum_probs=251.8

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhh
Q 038320          107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEW  186 (467)
Q Consensus       107 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~  186 (467)
                      .+..++++++|++|++++|.+++  +| .++.+++|++|++++|.+++ +|  ++.+++|++|++++|.++.++      
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~------  101 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD------  101 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC------
T ss_pred             cccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee------
Confidence            34467788999999999999985  45 68889999999999999985 44  889999999999999988763      


Q ss_pred             cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320          187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS  266 (467)
Q Consensus       187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  266 (467)
                      +.++++|++|++++|.+++.      .+..+++|++|++++|.+++.   .+..+++|++|++++|...+.+  .+..++
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l------~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC------CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             cCCCCcCCEEECCCCcCCee------cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCC
Confidence            77899999999999999875      267899999999999999885   3778999999999999766666  477889


Q ss_pred             CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCc
Q 038320          267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSL  346 (467)
Q Consensus       267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  346 (467)
                      +|+.|++++|.+++ +|  +..+++|+.|++++|.+ ++.   .++.+++|+.|++++|++++ +|  +..+     ++|
T Consensus       171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-----~~L  235 (457)
T 3bz5_A          171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPL-----TQL  235 (457)
T ss_dssp             TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTC-----TTC
T ss_pred             cCCEEECCCCccce-ec--cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCcccc-cC--cccc-----CCC
Confidence            99999999999986 44  78899999999999998 443   37889999999999999988 33  3443     489


Q ss_pred             cEEECcCCCCCcCCCccccCCC-------CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh--------
Q 038320          347 ESLDLGQNNLGGFLPNSLGQLE-------NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS--------  411 (467)
Q Consensus       347 ~~L~L~~n~i~~~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~--------  411 (467)
                      ++|++++|++++..+..+..+.       +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|..        
T Consensus       236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            9999999999987554444443       55666777777776666  467899999999999877766642        


Q ss_pred             hcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320          412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR  456 (467)
Q Consensus       412 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~  456 (467)
                      +..+++|++|++++|++++. +   +..+++|+.|++++|++++.
T Consensus       314 l~~~~~L~~L~L~~N~l~~l-~---l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL-D---VSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC-C---CTTCTTCSEEECCSSCCCBC
T ss_pred             hhhcccCCEEECCCCccccc-c---cccCCcCcEEECCCCCCCCc
Confidence            55678999999999999884 2   77899999999999988853

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5e-33  Score=287.42  Aligned_cols=316  Identities=20%  Similarity=0.179  Sum_probs=268.6

Q ss_pred             CCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCc
Q 038320           95 TDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF  174 (467)
Q Consensus        95 ~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  174 (467)
                      .+++.++.+.+..+..+..+++|++|+|++|.+++. .|..++.+++|++|++++|.+++..|..|+++++|++|++++|
T Consensus        55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  133 (597)
T 3oja_B           55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  133 (597)
T ss_dssp             EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence            344444777666566678999999999999999875 6678999999999999999999888888999999999999999


Q ss_pred             cCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcC
Q 038320          175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF  254 (467)
Q Consensus       175 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  254 (467)
                      .++.++...   +.++++|++|++++|.+++..+   ..+..+++|+.|++++|.+.+..   +..+++|+.|++++|.+
T Consensus       134 ~l~~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          134 DLSSLPRGI---FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CCCCCCTTT---TTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             CCCCCCHHH---hccCCCCCEEEeeCCcCCCCCh---hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            999888764   5889999999999999988764   36788999999999999998864   56789999999999988


Q ss_pred             CCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhH
Q 038320          255 NSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEF  334 (467)
Q Consensus       255 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  334 (467)
                      ++     +...++|+.|++++|.+....+.   ..++|+.|++++|.+ .+  +..+..+++|+.|++++|.+++..|..
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l-~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNL-TD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCC-CC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            64     34557899999999999754332   246899999999999 44  367889999999999999999988888


Q ss_pred             HHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320          335 VDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK  414 (467)
Q Consensus       335 l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~  414 (467)
                      +..++     +|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++. +  +..
T Consensus       274 ~~~l~-----~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~  343 (597)
T 3oja_B          274 FVKMQ-----RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST  343 (597)
T ss_dssp             GTTCS-----SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred             hcCcc-----CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence            87776     99999999999996 4667788999999999999998 6788888999999999999999854 3  678


Q ss_pred             CCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320          415 LSHLVVLDISGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       415 l~~L~~L~l~~n~~~~~~~~~~~~~l~  441 (467)
                      +++|+.|++++|++.+......+..+.
T Consensus       344 ~~~L~~L~l~~N~~~~~~~~~~~~~~~  370 (597)
T 3oja_B          344 HHTLKNLTLSHNDWDCNSLRALFRNVA  370 (597)
T ss_dssp             TCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred             cCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence            899999999999998765543444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.3e-32  Score=283.71  Aligned_cols=329  Identities=26%  Similarity=0.239  Sum_probs=253.2

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      +++++|||++|+|++. .+..|.++++|++|+|++|++++..|..|.++++|++|++++|+++.++...   |.++++|+
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---FSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG---GTTCTTCC
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH---hcCCCCCC
Confidence            4799999999999965 5678999999999999999999777778999999999999999999887654   78999999


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccC---------
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN---------  264 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------  264 (467)
                      +|++++|.+++..+.   .+..+++|++|++++|.+... .|..+..+++|++|++++|.+++..+..+..         
T Consensus       128 ~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          128 KLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             EEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred             EEECCCCcCCCCChh---hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence            999999999987643   578899999999999999764 5677889999999999999876433322211         


Q ss_pred             --------------------------------------------------------------------------------
Q 038320          265 --------------------------------------------------------------------------------  264 (467)
Q Consensus       265 --------------------------------------------------------------------------------  264 (467)
                                                                                                      
T Consensus       205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~  284 (635)
T 4g8a_A          205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  284 (635)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred             hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence                                                                                            


Q ss_pred             ------------------------------------------CCCCCEEeccCCccccccc-------------------
Q 038320          265 ------------------------------------------ISKLAHLDLSANNLQGNIP-------------------  283 (467)
Q Consensus       265 ------------------------------------------l~~L~~L~l~~n~l~~~~~-------------------  283 (467)
                                                                ...++.|++.+|.+.+..+                   
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred             hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence                                                      1122333333332221110                   


Q ss_pred             hhhhCCCCCCEEeCCCCCCCC-CCCcccccC-----------------------CCCCCEEeccCCcCCCchh-hHHHhh
Q 038320          284 DAFANMTSLRELDLSENSLIG-GQIPKDLGS-----------------------LCNLWDLDLSGNDLDGEII-EFVDRL  338 (467)
Q Consensus       284 ~~l~~l~~L~~L~L~~n~l~~-~~~~~~l~~-----------------------l~~L~~L~l~~n~l~~~~~-~~l~~~  338 (467)
                      .....+++|+.+++++|.+.. +..+.....                       +++|+.+++..+......+ ..+   
T Consensus       365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~---  441 (635)
T 4g8a_A          365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---  441 (635)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT---
T ss_pred             cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc---
Confidence            011245778888888887621 112222333                       4444555554444332221 112   


Q ss_pred             hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECcCCcCcccChhhhcCCCC
Q 038320          339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSH  417 (467)
Q Consensus       339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  417 (467)
                        ....+++.++++.|.+.+..+..+..++.+++|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++
T Consensus       442 --~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~  519 (635)
T 4g8a_A          442 --LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  519 (635)
T ss_dssp             --TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             --ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence              23348999999999999888889999999999999999754 457788999999999999999999999999999999


Q ss_pred             CCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320          418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR  456 (467)
Q Consensus       418 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~  456 (467)
                      |++|+|++|++++..+. .|..+++|+.|+|++|+|+..
T Consensus       520 L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          520 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             CCEEECTTSCCCBCCCG-GGTTCTTCCEEECTTSCCCBC
T ss_pred             CCEEECCCCcCCCCChh-HHhCCCCCCEEECCCCcCCCC
Confidence            99999999999988887 899999999999999988644

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.4e-31  Score=256.38  Aligned_cols=290  Identities=20%  Similarity=0.263  Sum_probs=174.7

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCE
Q 038320          116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY  195 (467)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~  195 (467)
                      ++++++++++.++  .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++.+.+..   +.++++|++
T Consensus        32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKLER  104 (330)
T ss_dssp             ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTCCE
T ss_pred             CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCCCE
Confidence            3455555555544  2443332  45555566555555444444555555555555555554442221   344444444


Q ss_pred             EECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccC
Q 038320          196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA  275 (467)
Q Consensus       196 L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  275 (467)
                      |++++|.++.....    +  .+                        +|++|++++|.+++..+..+.++++|+.|++++
T Consensus       105 L~Ls~n~l~~l~~~----~--~~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  154 (330)
T 1xku_A          105 LYLSKNQLKELPEK----M--PK------------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGT  154 (330)
T ss_dssp             EECCSSCCSBCCSS----C--CT------------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             EECCCCcCCccChh----h--cc------------------------cccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence            44444444322110    0  13                        444444445544444444455555555555555


Q ss_pred             Ccccc--ccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcC
Q 038320          276 NNLQG--NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ  353 (467)
Q Consensus       276 n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  353 (467)
                      |.+..  ..+..+.++++|++|++++|.+  ..+|..+.  ++|+.|++++|.+++..+..+..++     +|++|++++
T Consensus       155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l--~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~  225 (330)
T 1xku_A          155 NPLKSSGIENGAFQGMKKLSYIRIADTNI--TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN-----NLAKLGLSF  225 (330)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCC--CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT-----TCCEEECCS
T ss_pred             CcCCccCcChhhccCCCCcCEEECCCCcc--ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCC-----CCCEEECCC
Confidence            55532  4455566666677777766666  23443332  6777777777777766666665554     788888888


Q ss_pred             CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC------CCCCCEEeCcCCC
Q 038320          354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK------LSHLVVLDISGNP  427 (467)
Q Consensus       354 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~l~~n~  427 (467)
                      |.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..++.      .+.++.+++++|+
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            8887766667778888888888888887 67777888888888888888887665555543      3788899999998


Q ss_pred             Ccc-cCChhhhCCCCCCCEEeccCCC
Q 038320          428 WIG-LVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       428 ~~~-~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      +.. .++...|..+++++.+++++|+
T Consensus       305 ~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          305 VQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccCccccccccceeEEEecccC
Confidence            863 3443478889999999999883

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=7.6e-34  Score=271.33  Aligned_cols=274  Identities=19%  Similarity=0.199  Sum_probs=178.4

Q ss_pred             cccccccHhhHHHHHHhHhcC-CCCCCCCCCCC-----CCCCCCcccEEecC--------CCCCEEEEEcCCCCCCCCcC
Q 038320           30 QSIARCVQNEKEALLKIKASV-TDPSGRLSSWT-----GEDCCKWEGVICDN--------STGKVVQLKLRSPEIPDSFT   95 (467)
Q Consensus        30 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~-----~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~   95 (467)
                      ++.+.+..+|+.||++||+.+ .+|.++..+|.     ..++|.|.|+.|..        ...+|+.+++++        
T Consensus        19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------   90 (328)
T 4fcg_A           19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--------   90 (328)
T ss_dssp             CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------
T ss_pred             eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------
Confidence            334556789999999999987 46666667782     56789999999942        346788888887        


Q ss_pred             CCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCcc
Q 038320           96 DNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY  175 (467)
Q Consensus        96 ~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  175 (467)
                           +.++ .+|..++++++|++|+|++|.++  .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.
T Consensus        91 -----n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           91 -----VPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             -----SCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred             -----CCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence                 6666 67777888888999999888888  48888888888999999888888 778888888888888888866


Q ss_pred             CC-CCCCCCh-----hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 038320          176 YS-SLESDDV-----EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDL  249 (467)
Q Consensus       176 ~~-~l~~~~~-----~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  249 (467)
                      +. .+|....     ..+..+++|++|++++|.++..    +..+..+++|++|++++|.+.+.++ .+..+++|++|++
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~L  236 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDL  236 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEEC
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEEC
Confidence            54 3333210     0122356666666666655522    2234455555555555555554322 4555555555555


Q ss_pred             cCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCc
Q 038320          250 SSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGND  326 (467)
Q Consensus       250 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  326 (467)
                      ++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.++++|++|++++|.+ .+.+|..++++++|+.+++..+.
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCTTCEEECCGGG
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccCceEEeCCHHH
Confidence            55555555555555555555555555555555555555555555555555555 45555555555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=4.7e-32  Score=259.84  Aligned_cols=287  Identities=23%  Similarity=0.283  Sum_probs=179.9

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCE
Q 038320          116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY  195 (467)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~  195 (467)
                      ++++++++++.++  .+|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|.++.+.+..   +.++++|++
T Consensus        34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA---FSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---STTCTTCCE
T ss_pred             cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---hhCcCCCCE
Confidence            6888888888877  4666553  68888899888888666777888888888888888877654332   667777777


Q ss_pred             EECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCC--CcchhccCCCCCCEEec
Q 038320          196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS--SIPQWLLNISKLAHLDL  273 (467)
Q Consensus       196 L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l  273 (467)
                      |++++|.++.....    +  .++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|+.|++
T Consensus       107 L~L~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          107 LYISKNHLVEIPPN----L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             EECCSSCCCSCCSS----C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred             EECCCCcCCccCcc----c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence            77777776644321    1  1566666666666665555555556666666666665532  333444444 5555555


Q ss_pred             cCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcC
Q 038320          274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ  353 (467)
Q Consensus       274 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  353 (467)
                      ++|.+++                          +|..+.  ++|+.|++++|.+++..+..+..++     +|++|++++
T Consensus       180 ~~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~-----~L~~L~L~~  226 (332)
T 2ft3_A          180 SEAKLTG--------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS-----KLYRLGLGH  226 (332)
T ss_dssp             CSSBCSS--------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT-----TCSCCBCCS
T ss_pred             cCCCCCc--------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCC-----CCCEEECCC
Confidence            5555442                          222221  3455555555555544444444333     566666666


Q ss_pred             CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC------CCCCCEEeCcCCC
Q 038320          354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK------LSHLVVLDISGNP  427 (467)
Q Consensus       354 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~l~~n~  427 (467)
                      |.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..      .++|+.|++++|+
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            6666555556666667777777777766 56666667777777777777776555555543      3567888888888


Q ss_pred             Cc--ccCChhhhCCCCCCCEEeccCC
Q 038320          428 WI--GLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       428 ~~--~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      +.  +..+. .|..+++|+.+++++|
T Consensus       306 ~~~~~~~~~-~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          306 VPYWEVQPA-TFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SCGGGSCGG-GGTTBCCSTTEEC---
T ss_pred             ccccccCcc-cccccchhhhhhcccc
Confidence            76  33333 6778888888888877

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.1e-31  Score=261.55  Aligned_cols=298  Identities=24%  Similarity=0.299  Sum_probs=216.9

Q ss_pred             CCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCcc
Q 038320           96 DNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY  175 (467)
Q Consensus        96 ~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  175 (467)
                      +++++|.+++ +|..   +++|++|++++|++++  ++..   .++|++|++++|.+++ +| .++++++|++|++++|.
T Consensus        96 L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           96 LVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             EECCSSCCSS-CCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             EEccCCcCCc-cccc---cCCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence            3333477777 5543   4789999999988874  3332   2689999999999885 77 58899999999999998


Q ss_pred             CCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCC
Q 038320          176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN  255 (467)
Q Consensus       176 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  255 (467)
                      ++.++..       ..+|++|++++|.+++..     .+..+++|++|++++|.+.+.+. .   .++|++|++++|.++
T Consensus       165 l~~lp~~-------~~~L~~L~L~~n~l~~l~-----~~~~l~~L~~L~l~~N~l~~l~~-~---~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          165 LKKLPDL-------PPSLEFIAAGNNQLEELP-----ELQNLPFLTAIYADNNSLKKLPD-L---PLSLESIVAGNNILE  228 (454)
T ss_dssp             CSCCCCC-------CTTCCEEECCSSCCSSCC-----CCTTCTTCCEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS
T ss_pred             CcccCCC-------cccccEEECcCCcCCcCc-----cccCCCCCCEEECCCCcCCcCCC-C---cCcccEEECcCCcCC
Confidence            8876653       248999999999888742     47888999999999998887432 1   258999999999887


Q ss_pred             CCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHH
Q 038320          256 SSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV  335 (467)
Q Consensus       256 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  335 (467)
                       .+|. +..+++|+.|++++|.+++ +|.   .+++|+.|++++|.+ .+ +|..   .++|+.|++++|.+++...   
T Consensus       229 -~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l-~~-l~~~---~~~L~~L~ls~N~l~~l~~---  294 (454)
T 1jl5_A          229 -ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYL-TD-LPEL---PQSLTFLDVSENIFSGLSE---  294 (454)
T ss_dssp             -SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCC-SC-CCCC---CTTCCEEECCSSCCSEESC---
T ss_pred             -cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcc-cc-cCcc---cCcCCEEECcCCccCcccC---
Confidence             6674 7888999999999998885 443   247899999999988 33 5543   4789999999998876211   


Q ss_pred             HhhhcccCCCccEEECcCCCCCcCCCccccCC-CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320          336 DRLSKCANSSLESLDLGQNNLGGFLPNSLGQL-ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK  414 (467)
Q Consensus       336 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~  414 (467)
                        .    +++|++|++++|++++.     ..+ ++|++|++++|.+++ +|..   +++|++|++++|+++ .+|.   .
T Consensus       295 --~----~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~  355 (454)
T 1jl5_A          295 --L----PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L  355 (454)
T ss_dssp             --C----CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C
T ss_pred             --c----CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h
Confidence              1    13789999999988752     223 589999999999885 5653   588999999999988 5666   4


Q ss_pred             CCCCCEEeCcCCCCcc--cCChhhhCCC-------------CCCCEEeccCCCCC
Q 038320          415 LSHLVVLDISGNPWIG--LVTEVHFSKL-------------KNLKELHIAKYSLA  454 (467)
Q Consensus       415 l~~L~~L~l~~n~~~~--~~~~~~~~~l-------------~~L~~l~l~~n~i~  454 (467)
                      +++|++|++++|++++  .+|. .+..+             ++|+.|++++|+++
T Consensus       356 l~~L~~L~L~~N~l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCT-TCCEEECCC-----------------------
T ss_pred             hhhccEEECCCCCCCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            7889999999999988  7777 56666             78999999999665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.2e-33  Score=263.93  Aligned_cols=249  Identities=27%  Similarity=0.394  Sum_probs=219.1

Q ss_pred             CCCCEEECCCcCCCC--CCCchhhhcCCCCCCCEEECCC-CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320          191 SSLQYLNLEGVDLSK--AGSSWVQATNMLPSLSELHLPA-CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK  267 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~--~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  267 (467)
                      .+++.|++++|.+.+  ..   +..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~---~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC---CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCccc---ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            356666666666665  33   33667788888888884 8888888888999999999999999998888999999999


Q ss_pred             CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCC-CCCEEeccCCcCCCchhhHHHhhhcccCCCc
Q 038320          268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCANSSL  346 (467)
Q Consensus       268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  346 (467)
                      |++|++++|.+++.+|..+..+++|++|++++|.+ .+.+|..+..++ +|++|++++|.+++..|..+...      +|
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------~L  199 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------NL  199 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------CC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc-cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------cc
Confidence            99999999999988999999999999999999998 778888898887 99999999999998888877665      49


Q ss_pred             cEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320          347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       347 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  426 (467)
                      ++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            9999999999998999999999999999999999977666 788999999999999999999999999999999999999


Q ss_pred             CCcccCChhhhCCCCCCCEEeccCCC
Q 038320          427 PWIGLVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       427 ~~~~~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      ++++.+|. . ..+++|+.+++++|+
T Consensus       279 ~l~~~ip~-~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          279 NLCGEIPQ-G-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCC-S-TTGGGSCGGGTCSSS
T ss_pred             cccccCCC-C-ccccccChHHhcCCC
Confidence            99999998 3 789999999999993

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6.3e-31  Score=251.79  Aligned_cols=269  Identities=19%  Similarity=0.206  Sum_probs=187.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      ++|++|++++|++++. .+..++++++|++|++++|.+++..|..+.++++|++|++++|.++.++...    .  ++|+
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~----~--~~L~  124 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----P--KTLQ  124 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC----C--TTCC
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh----c--cccc
Confidence            6899999999999865 5668999999999999999999888999999999999999999999887652    2  7999


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcc--cCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE--FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD  272 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  272 (467)
                      +|++++|.+....   ...+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|+.|+
T Consensus       125 ~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~  198 (330)
T 1xku_A          125 ELRVHENEITKVR---KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH  198 (330)
T ss_dssp             EEECCSSCCCBBC---HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred             EEECCCCcccccC---HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence            9999999988765   3357778888888888888753  555667777777777777777653 443332  5566666


Q ss_pred             ccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320          273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG  352 (467)
Q Consensus       273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  352 (467)
                      +++|.+++..+..+..+++|++|++++|.+                         ++..+..+..++     +|++|+++
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-------------------------~~~~~~~~~~l~-----~L~~L~L~  248 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSI-------------------------SAVDNGSLANTP-----HLRELHLN  248 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCC-------------------------CEECTTTGGGST-----TCCEEECC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcC-------------------------ceeChhhccCCC-----CCCEEECC
Confidence            666655555455555555555555555554                         433333333332     55566666


Q ss_pred             CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccC------CCCCCEEECcCCcCcc--cChhhhcCCCCCCEEeCc
Q 038320          353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN------LSSLRELYLHNNLMDG--TIPKSLGKLSHLVVLDIS  424 (467)
Q Consensus       353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~  424 (467)
                      +|+++ .+|..+..+++|++|++++|.+++..+..|..      .+.++.|++++|.+..  ..|..+..+++++.++++
T Consensus       249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence            66555 44555666666777777777666544444432      3667788888887753  455677777888888888


Q ss_pred             CCC
Q 038320          425 GNP  427 (467)
Q Consensus       425 ~n~  427 (467)
                      +|+
T Consensus       328 ~N~  330 (330)
T 1xku_A          328 NYK  330 (330)
T ss_dssp             ---
T ss_pred             ccC
Confidence            774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.4e-31  Score=254.91  Aligned_cols=275  Identities=20%  Similarity=0.216  Sum_probs=198.2

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320          106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE  185 (467)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~  185 (467)
                      .+|..+  .++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++.++...  
T Consensus        47 ~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--  121 (332)
T 2ft3_A           47 AVPKEI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--  121 (332)
T ss_dssp             SCCSCC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC--
T ss_pred             ccCCCC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc--
Confidence            344444  36899999999999865 5678999999999999999999888889999999999999999999888763  


Q ss_pred             hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcc--cCCccccCCCCCcEEEccCCcCCCCcchhcc
Q 038320          186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE--FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL  263 (467)
Q Consensus       186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  263 (467)
                        .  ++|++|++++|.+.....   ..+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+++ +|..+.
T Consensus       122 --~--~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~  192 (332)
T 2ft3_A          122 --P--SSLVELRIHDNRIRKVPK---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP  192 (332)
T ss_dssp             --C--TTCCEEECCSSCCCCCCS---GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred             --c--ccCCEEECCCCccCccCH---hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence              2  899999999999997763   357889999999999999964  667777777 99999999999985 555443


Q ss_pred             CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320          264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN  343 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  343 (467)
                        ++|+.|++++|.+++..+..+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.++               
T Consensus       193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~---------------  254 (332)
T 2ft3_A          193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS---------------  254 (332)
T ss_dssp             --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSSCCC---------------
T ss_pred             --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCCcCe---------------
Confidence              6777777777777766656666666677777666666 4444444555555555555555544               


Q ss_pred             CCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccC------CCCCCEEECcCCcCc--ccChhhhcCC
Q 038320          344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN------LSSLRELYLHNNLMD--GTIPKSLGKL  415 (467)
Q Consensus       344 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~Ls~n~l~--~~~p~~l~~l  415 (467)
                                     .+|..+..+++|++|++++|.+++..+..+..      .+.|+.|++++|.+.  +..|..+..+
T Consensus       255 ---------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          255 ---------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             ---------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             ---------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence                           33444455555555555555555433333332      355677777777765  4566667777


Q ss_pred             CCCCEEeCcCCC
Q 038320          416 SHLVVLDISGNP  427 (467)
Q Consensus       416 ~~L~~L~l~~n~  427 (467)
                      ++|+.+++++|+
T Consensus       320 ~~L~~l~l~~n~  331 (332)
T 2ft3_A          320 TDRLAIQFGNYK  331 (332)
T ss_dssp             CCSTTEEC----
T ss_pred             chhhhhhccccc
Confidence            777777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.98  E-value=8.2e-32  Score=268.31  Aligned_cols=306  Identities=25%  Similarity=0.303  Sum_probs=189.4

Q ss_pred             cCCCCcccccccccCccccCCCCC-------------CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccC
Q 038320           94 FTDNGTTYQLEGEISPSVLDLKHL-------------NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSF  160 (467)
Q Consensus        94 ~~~~~~~~~l~~~~~~~l~~l~~L-------------~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  160 (467)
                      +.++++++.+.|.+|..++++++|             ++|++++|.+++  +|..   .++|++|++++|.+++ +|.. 
T Consensus        37 ~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~--lp~~---~~~L~~L~l~~n~l~~-lp~~-  109 (454)
T 1jl5_A           37 TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLTE-LPEL-  109 (454)
T ss_dssp             HHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCSS-CCCC-
T ss_pred             hhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc--CCCC---cCCCCEEEccCCcCCc-cccc-
Confidence            344555577777778777777654             888888887774  4442   3577788888777775 5543 


Q ss_pred             CCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccC
Q 038320          161 GNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVN  240 (467)
Q Consensus       161 ~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  240 (467)
                        +++|++|++++|.++.++..       .++|++|++++|.+++..     .+..+++|++|++++|++.+.+ ..   
T Consensus       110 --~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~L~~n~l~~lp-----~~~~l~~L~~L~l~~N~l~~lp-~~---  171 (454)
T 1jl5_A          110 --PQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLP-----ELQNSSFLKIIDVDNNSLKKLP-DL---  171 (454)
T ss_dssp             --CTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSSCC-----CCTTCTTCCEEECCSSCCSCCC-CC---
T ss_pred             --cCCCcEEECCCCccCcccCC-------CCCCCEEECcCCCCCCCc-----ccCCCCCCCEEECCCCcCcccC-CC---
Confidence              35667777777666654431       156777777777666532     3666777777777777766532 22   


Q ss_pred             CCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEE
Q 038320          241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL  320 (467)
Q Consensus       241 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  320 (467)
                      ..+|++|++++|.+++ +| .+.++++|+.|++++|.+++ +|..   .++|++|++++|.+ . .+| .++.+++|++|
T Consensus       172 ~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l-~-~lp-~~~~l~~L~~L  242 (454)
T 1jl5_A          172 PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL-E-ELP-ELQNLPFLTTI  242 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC-S-SCC-CCTTCTTCCEE
T ss_pred             cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC-C-ccc-ccCCCCCCCEE
Confidence            2467777777776664 44 46666777777777776664 3321   24666666666666 2 444 36666677777


Q ss_pred             eccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcc--ccccc-----------
Q 038320          321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG--SIPES-----------  387 (467)
Q Consensus       321 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~-----------  387 (467)
                      ++++|.+++. |..        +++|++|++++|++++ +|..   +++|++|++++|.+++  .+|..           
T Consensus       243 ~l~~N~l~~l-~~~--------~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          243 YADNNLLKTL-PDL--------PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             ECCSSCCSSC-CSC--------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcc-ccc--------ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence            7777666642 111        1255555555555553 2221   2445555555554443  11111           


Q ss_pred             --ccCC-CCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          388 --IGNL-SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       388 --l~~~-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                        +..+ ++|++|++++|++++ +|..   +++|++|++++|++++ +|.    .+++|+.|++++|+++.
T Consensus       310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          310 RSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             SEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS
T ss_pred             CcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc----hhhhccEEECCCCCCCc
Confidence              1122 478888888888875 5543   5889999999998874 554    36889999999998775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=5.8e-35  Score=292.98  Aligned_cols=359  Identities=21%  Similarity=0.158  Sum_probs=237.3

Q ss_pred             CCCCccccccc----ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCC----CCCEEEcCCCcCCC----CCCccCCC
Q 038320           95 TDNGTTYQLEG----EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLE----KLRYLNLSGASFAG----NIPPSFGN  162 (467)
Q Consensus        95 ~~~~~~~~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~----~L~~L~L~~n~l~~----~~p~~l~~  162 (467)
                      .++++++.+++    .++..+..+++|++|++++|.+++.........++    +|++|++++|.++.    .++..+..
T Consensus        32 ~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  111 (461)
T 1z7x_W           32 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT  111 (461)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS
T ss_pred             EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc
Confidence            33444466654    34556777788888888888776432222223344    68888888887763    45667778


Q ss_pred             CCcCCeeeccCccCCCCCCCChh-h-cCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccCCcccc
Q 038320          163 LSSLQILDLNTFYYSSLESDDVE-W-LSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFPPLSVV  239 (467)
Q Consensus       163 l~~L~~L~l~~n~~~~l~~~~~~-~-l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  239 (467)
                      +++|++|++++|.+.......+. . ....++|++|++++|.+++.... +...+..+++|++|++++|.+.+..+..+.
T Consensus       112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  191 (461)
T 1z7x_W          112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC  191 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence            88888888888776532211111 1 22356788888888877664321 233445577888888888887665443333


Q ss_pred             -----CCCCCcEEEccCCcCCCC----cchhccCCCCCCEEeccCCccccccc-----hhhhCCCCCCEEeCCCCCCCCC
Q 038320          240 -----NFSSLLFLDLSSNDFNSS----IPQWLLNISKLAHLDLSANNLQGNIP-----DAFANMTSLRELDLSENSLIGG  305 (467)
Q Consensus       240 -----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~  305 (467)
                           ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+...     ..+..+++|++|++++|.+ ++
T Consensus       192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~  270 (461)
T 1z7x_W          192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TA  270 (461)
T ss_dssp             HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CH
T ss_pred             HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CH
Confidence                 255888888888887764    46666777888888888887765322     2223577888888888877 33


Q ss_pred             C----CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccC
Q 038320          306 Q----IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWG  377 (467)
Q Consensus       306 ~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~  377 (467)
                      .    ++..+..+++|++|++++|.+++..+..+........++|++|++++|.+++.    ++..+..+++|++|++++
T Consensus       271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence            2    45566677888888888888877666666655433344788888888888754    455666778888888888


Q ss_pred             CcCcccccccccC-----CCCCCEEECcCCcCcc----cChhhhcCCCCCCEEeCcCCCCcccCChh---hh-CCCCCCC
Q 038320          378 NLFRGSIPESIGN-----LSSLRELYLHNNLMDG----TIPKSLGKLSHLVVLDISGNPWIGLVTEV---HF-SKLKNLK  444 (467)
Q Consensus       378 n~l~~~~~~~l~~-----~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~---~~-~~l~~L~  444 (467)
                      |.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|++++.....   .+ .....|+
T Consensus       351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~  430 (461)
T 1z7x_W          351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE  430 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCC
T ss_pred             CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchh
Confidence            8887654444432     6788888888888876    67777778888888888888877542221   11 1234677


Q ss_pred             EEeccCCCCC
Q 038320          445 ELHIAKYSLA  454 (467)
Q Consensus       445 ~l~l~~n~i~  454 (467)
                      .|.+.++.+.
T Consensus       431 ~L~~~~~~~~  440 (461)
T 1z7x_W          431 QLVLYDIYWS  440 (461)
T ss_dssp             EEECTTCCCC
T ss_pred             heeecccccC
Confidence            7877777554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=1.9e-34  Score=289.31  Aligned_cols=357  Identities=21%  Similarity=0.177  Sum_probs=274.3

Q ss_pred             CEEEEEcCCCCCCCCcCCCCcccccccccCcc-ccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCcCCC
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPS-VLDLKHLNYLDLSLNNFRGS---RIPNFLGSLEKLRYLNLSGASFAG  154 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~  154 (467)
                      +++.+++++             +.++...... +..+++|++|++++|.+++.   .++..+..+++|++|++++|.+.+
T Consensus         4 ~l~~L~Ls~-------------~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            4 DIQSLDIQC-------------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEES-------------CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             cceehhhhh-------------cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            577888887             6676554433 78899999999999998753   256778889999999999999875


Q ss_pred             CCCccC-CCCC----cCCeeeccCccCCCCCC-CChhhcCCCCCCCEEECCCcCCCCCCCchhh-h-cCCCCCCCEEECC
Q 038320          155 NIPPSF-GNLS----SLQILDLNTFYYSSLES-DDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ-A-TNMLPSLSELHLP  226 (467)
Q Consensus       155 ~~p~~l-~~l~----~L~~L~l~~n~~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~-~~~l~~L~~L~l~  226 (467)
                      ..+..+ ..++    +|++|++++|.++.... .....+..+++|++|++++|.+++....... . ....++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            433222 2344    79999999998764321 1133478999999999999998755322111 1 3346789999999


Q ss_pred             CCcCcccC----CccccCCCCCcEEEccCCcCCCCcchhcc-----CCCCCCEEeccCCccccc----cchhhhCCCCCC
Q 038320          227 ACGLFEFP----PLSVVNFSSLLFLDLSSNDFNSSIPQWLL-----NISKLAHLDLSANNLQGN----IPDAFANMTSLR  293 (467)
Q Consensus       227 ~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~  293 (467)
                      +|.+++..    +..+..+++|++|++++|.+++..+..+.     ..++|+.|++++|.+++.    ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            99998754    45566789999999999998765444443     367999999999999864    577788899999


Q ss_pred             EEeCCCCCCCCCCC-----cccccCCCCCCEEeccCCcCCCch----hhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320          294 ELDLSENSLIGGQI-----PKDLGSLCNLWDLDLSGNDLDGEI----IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL  364 (467)
Q Consensus       294 ~L~L~~n~l~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l  364 (467)
                      +|++++|.+ ++..     +..+..+++|++|++++|.+++..    +..+...+     +|++|++++|.+++..+..+
T Consensus       231 ~L~Ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          231 ELALGSNKL-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-----SLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             EEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-----TCCEEECTTCCCHHHHHHHH
T ss_pred             EEeccCCcC-ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-----CcceEECCCCCCchHHHHHH
Confidence            999999988 4332     222346899999999999998764    34444444     89999999999976543333


Q ss_pred             c-----CCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCcccChhhhcC-----CCCCCEEeCcCCCCcc
Q 038320          365 G-----QLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGTIPKSLGK-----LSHLVVLDISGNPWIG  430 (467)
Q Consensus       365 ~-----~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~l~~n~~~~  430 (467)
                      .     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|++++
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            3     337999999999999875    5666778899999999999998776655543     7899999999999986


Q ss_pred             ----cCChhhhCCCCCCCEEeccCCCCCC
Q 038320          431 ----LVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       431 ----~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                          .++. .+..+++|+.|++++|+|++
T Consensus       385 ~~~~~l~~-~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          385 SSCSSLAA-TLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHH-HHHHCCCCCEEECCSSSCCH
T ss_pred             hhHHHHHH-HHHhCCCccEEECCCCCCCH
Confidence                6676 67889999999999998874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=6.5e-30  Score=247.10  Aligned_cols=262  Identities=24%  Similarity=0.272  Sum_probs=177.9

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      ++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++.++...   +.++++|+
T Consensus        52 ~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW---FKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH---HTTCTTCS
T ss_pred             ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH---hCCCccCC
Confidence            5899999999999854 4557899999999999999998777788999999999999999888766532   67788888


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCC-cCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC-GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL  273 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  273 (467)
                      +|++++|.++....  ...+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       128 ~L~L~~n~l~~l~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          128 FLNLLGNPYKTLGE--TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             EEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             EEECCCCCCcccCc--hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            88888888776542  024667778888888777 466666667777777788888777777666777777777777777


Q ss_pred             cCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccc---cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEE
Q 038320          274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL---GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD  350 (467)
Q Consensus       274 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~  350 (467)
                      ++|.+.......+..+++|+.|++++|.+ ++..+..+   .....++.++++++.+++....                 
T Consensus       206 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~-----------------  267 (353)
T 2z80_A          206 HMKQHILLLEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-----------------  267 (353)
T ss_dssp             ECSCSTTHHHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHH-----------------
T ss_pred             CCCccccchhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchh-----------------
Confidence            77777543333345577777777777776 33322222   1233444444444444432111                 


Q ss_pred             CcCCCCCcCCCccccCCCCCCEEEccCCcCccccccc-ccCCCCCCEEECcCCcCcccCh
Q 038320          351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIP  409 (467)
Q Consensus       351 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p  409 (467)
                              .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|++.+..|
T Consensus       268 --------~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 --------QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             --------HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --------hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                    23445556666666666666666 34444 4566667777777776665443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.8e-29  Score=242.61  Aligned_cols=282  Identities=25%  Similarity=0.276  Sum_probs=176.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      -..|+.....+.+++.++  .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++.++...   +.++
T Consensus        27 ~~~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l   99 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS---FSSL   99 (353)
T ss_dssp             CCEECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTC
T ss_pred             CCCCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh---cCCC
Confidence            344556666788888877  4666554  47888888888888655557888888888888888777655432   4555


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCC
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLA  269 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~  269 (467)
                      ++|++|++++|.++..                           .+..+.++++|++|++++|.+++..+ ..+.++++|+
T Consensus       100 ~~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNL---------------------------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCCEEECCSSCCSSC---------------------------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCCEEECCCCcCCcC---------------------------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            5666666665555543                           33334444444444454444442211 2444555555


Q ss_pred             EEeccCC-ccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320          270 HLDLSAN-NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES  348 (467)
Q Consensus       270 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~  348 (467)
                      .|++++| .+.+..+..+.++++|++|++++|.+ .+..+..+..+++|++|++++|.++......+...+     +|++
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~L~~  226 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-----SVEC  226 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-----TEEE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhhhhcc-----cccE
Confidence            5555555 23433444555666666666666665 444556666666777777777766544333333333     7777


Q ss_pred             EECcCCCCCcCCCccc---cCCCCCCEEEccCCcCcc----cccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCE
Q 038320          349 LDLGQNNLGGFLPNSL---GQLENLKILQLWGNLFRG----SIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV  420 (467)
Q Consensus       349 L~L~~n~i~~~~~~~l---~~l~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~  420 (467)
                      |++++|.+++..+..+   .....++.++++++.+.+    .+|..+..+++|++|++++|+++ .+|.. +..+++|++
T Consensus       227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK  305 (353)
T ss_dssp             EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence            8888777776543333   235567777777777665    35666777888888888888887 45544 477888888


Q ss_pred             EeCcCCCCcccCC
Q 038320          421 LDISGNPWIGLVT  433 (467)
Q Consensus       421 L~l~~n~~~~~~~  433 (467)
                      |++++|++.+..+
T Consensus       306 L~L~~N~~~~~~~  318 (353)
T 2z80_A          306 IWLHTNPWDCSCP  318 (353)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EEeeCCCccCcCC
Confidence            8888888777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=8.8e-29  Score=236.23  Aligned_cols=227  Identities=22%  Similarity=0.309  Sum_probs=156.9

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeC
Q 038320          218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDL  297 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  297 (467)
                      ++++.|++++|.+.. +|..+.++++|++|++++|.++ .+|..+.++++|+.|++++|.++ .+|..+.++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            344455555554442 2334445555555555555555 55555555556666666666555 44555555666666666


Q ss_pred             CCCCCCCCCCccccc---------CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCC
Q 038320          298 SENSLIGGQIPKDLG---------SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLE  368 (467)
Q Consensus       298 ~~n~l~~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~  368 (467)
                      ++|.+ .+.+|..+.         .+++|++|++++|.++ .+|..+..++     +|++|++++|.+++ +|..+..++
T Consensus       158 ~~n~~-~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-----~L~~L~L~~N~l~~-l~~~l~~l~  229 (328)
T 4fcg_A          158 RACPE-LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-----NLKSLKIRNSPLSA-LGPAIHHLP  229 (328)
T ss_dssp             EEETT-CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-----TCCEEEEESSCCCC-CCGGGGGCT
T ss_pred             CCCCC-ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-----CCCEEEccCCCCCc-CchhhccCC
Confidence            65554 444444433         4778888888888777 5565565554     78888888888874 455678888


Q ss_pred             CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEec
Q 038320          369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI  448 (467)
Q Consensus       369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l  448 (467)
                      +|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. .+.++++|+.+++
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l  308 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILV  308 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEEC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeC
Confidence            888888888888888888888888888888888888888888888888888888888888888888 7888888888888


Q ss_pred             cCCCCCCC
Q 038320          449 AKYSLAPR  456 (467)
Q Consensus       449 ~~n~i~~~  456 (467)
                      ..+.+...
T Consensus       309 ~~~~~~~l  316 (328)
T 4fcg_A          309 PPHLQAQL  316 (328)
T ss_dssp             CGGGSCC-
T ss_pred             CHHHHHHH
Confidence            88766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.9e-29  Score=234.62  Aligned_cols=282  Identities=20%  Similarity=0.178  Sum_probs=156.8

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEE
Q 038320          118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN  197 (467)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~  197 (467)
                      +.++.+++.++  .+|..+.  ++|++|++++|.++...+..+.++++|++|++++|.++.+.... ..+..+++|++|+
T Consensus        10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE-HHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc-cccccccccCEEE
Confidence            46777777766  3555443  57778888877777333334667777777777777665332110 1123344555555


Q ss_pred             CCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCCEEeccCC
Q 038320          198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSAN  276 (467)
Q Consensus       198 L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n  276 (467)
                      +++|.+.                           .. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|
T Consensus        85 Ls~n~i~---------------------------~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  136 (306)
T 2z66_A           85 LSFNGVI---------------------------TM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  136 (306)
T ss_dssp             CCSCSEE---------------------------EE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred             CCCCccc---------------------------cC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence            5554443                           22 2234444555555555554443322 34445555555555555


Q ss_pred             ccccccchhhhCCCCCCEEeCCCCCCCCC-CCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCC
Q 038320          277 NLQGNIPDAFANMTSLRELDLSENSLIGG-QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNN  355 (467)
Q Consensus       277 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  355 (467)
                      .+.+..+..+..+++|++|++++|.+ .+ ..|..+..+++|++|++++|.+++..+..+..++     +|++|++++|.
T Consensus       137 ~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~  210 (306)
T 2z66_A          137 HTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNN  210 (306)
T ss_dssp             CCEECSTTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSC
T ss_pred             cCCccchhhcccCcCCCEEECCCCcc-ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-----CCCEEECCCCc
Confidence            55555555555555555666555555 22 3455555566666666666666555454444443     66666666666


Q ss_pred             CCcCCCccccCCCCCCEEEccCCcCcccccccccCCC-CCCEEECcCCcCcccCh--hhhcCCCCCCEEeCcCCCCcccC
Q 038320          356 LGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLS-SLRELYLHNNLMDGTIP--KSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       356 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      +++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++.-.  .....+.+.+.+.+..+.+....
T Consensus       211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred             cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence            6655555666677777777777777766666666663 67777777777764321  11122233444455556666655


Q ss_pred             ChhhhCC
Q 038320          433 TEVHFSK  439 (467)
Q Consensus       433 ~~~~~~~  439 (467)
                      |. .+.+
T Consensus       291 p~-~~~g  296 (306)
T 2z66_A          291 PS-DKQG  296 (306)
T ss_dssp             SG-GGTT
T ss_pred             ch-hhCC
Confidence            55 3433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.8e-28  Score=230.87  Aligned_cols=250  Identities=24%  Similarity=0.263  Sum_probs=178.6

Q ss_pred             CeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc--CCccccCCCCC
Q 038320          167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF--PPLSVVNFSSL  244 (467)
Q Consensus       167 ~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L  244 (467)
                      +.++.+++.++.+|...      .++|++|++++|.++....   ..+..+++|++|++++|.+...  .+..+..+++|
T Consensus        10 ~~l~c~~~~l~~ip~~~------~~~l~~L~L~~n~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI------PSSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             TEEECCSSCCSSCCSCC------CTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             CEEEcCCCCcccCCCCC------CCCCCEEECCCCccCccCH---hHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            57788888888877652      2578888888888876542   2466778888888888877643  24455667888


Q ss_pred             cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc-hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320          245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS  323 (467)
Q Consensus       245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  323 (467)
                      ++|++++|.++ .+|..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+ .+..+..+..+++|++|+++
T Consensus        81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECC
Confidence            88888888776 456667778888888888887775544 4677778888888888877 55666667777777888887


Q ss_pred             CCcCCC-chhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320          324 GNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN  402 (467)
Q Consensus       324 ~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n  402 (467)
                      +|.+++ ..|..+..++     +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       159 ~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          159 GNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             CCccccccchhHHhhCc-----CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            777765 3444444444     7777777777777666677777777777777777777655556677777777777777


Q ss_pred             cCcccChhhhcCCC-CCCEEeCcCCCCcccC
Q 038320          403 LMDGTIPKSLGKLS-HLVVLDISGNPWIGLV  432 (467)
Q Consensus       403 ~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~  432 (467)
                      ++++..|..+..++ +|++|++++|++.+..
T Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            77777777777764 7777777777776543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=6.5e-28  Score=247.52  Aligned_cols=287  Identities=25%  Similarity=0.281  Sum_probs=172.0

Q ss_pred             CCCC-CCCCCCCcccEEe------cCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCC
Q 038320           57 LSSW-TGEDCCKWEGVIC------DNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRG  129 (467)
Q Consensus        57 ~~~w-~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~  129 (467)
                      +..| .+.+||.|+|..|      ......++.+++++             +.++ .+|..+.  ++|++|++++|.++ 
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-------------n~L~-~lp~~l~--~~L~~L~L~~N~l~-   74 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-------------SGLT-TLPDCLP--AHITTLVIPDNNLT-   74 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-------------SCCS-CCCSCCC--TTCSEEEECSCCCS-
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEecC-------------CCcC-ccChhhC--CCCcEEEecCCCCC-
Confidence            3456 3567899976322      11123477778877             5665 5565554  78888888888877 


Q ss_pred             CCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCc
Q 038320          130 SRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSS  209 (467)
Q Consensus       130 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  209 (467)
                       .+|.   .+++|++|++++|.++ .+|.   .+++|++|++++|.++.++.       .+++|+.|++++|.++.... 
T Consensus        75 -~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~lp~-  138 (622)
T 3g06_A           75 -SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPV-  138 (622)
T ss_dssp             -CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSCCCC-
T ss_pred             -CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCcCCC-
Confidence             3555   4678888888888877 4555   66788888888888777654       35677777777777766432 


Q ss_pred             hhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCC
Q 038320          210 WVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANM  289 (467)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  289 (467)
                            .+++|++|++++|.+.+.+.    .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|.   .+
T Consensus       139 ------~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~  200 (622)
T 3g06_A          139 ------LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LP  200 (622)
T ss_dssp             ------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             ------CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence                  13667777777777665432    23566667777766653 34   344666666666666653 332   23


Q ss_pred             CCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320          290 TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN  369 (467)
Q Consensus       290 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~  369 (467)
                      ++|+.|++++|.+ . .+|.   .+++|+.|++++|.+++. |   .     .+++|+.|++++|.++. +|.   .+++
T Consensus       201 ~~L~~L~L~~N~l-~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~-----~l~~L~~L~Ls~N~L~~-lp~---~~~~  262 (622)
T 3g06_A          201 SELYKLWAYNNRL-T-SLPA---LPSGLKELIVSGNRLTSL-P---V-----LPSELKELMVSGNRLTS-LPM---LPSG  262 (622)
T ss_dssp             TTCCEEECCSSCC-S-SCCC---CCTTCCEEECCSSCCSCC-C---C-----CCTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred             chhhEEECcCCcc-c-ccCC---CCCCCCEEEccCCccCcC-C---C-----CCCcCcEEECCCCCCCc-CCc---cccc
Confidence            5666666666665 2 3332   235566666666655542 1   1     11255666666665553 232   3455


Q ss_pred             CCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhc
Q 038320          370 LKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG  413 (467)
Q Consensus       370 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~  413 (467)
                      |+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+.
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            556666665555 4455555555566666666655555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7.7e-28  Score=225.39  Aligned_cols=249  Identities=24%  Similarity=0.230  Sum_probs=158.0

Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCcchhccCCCCCCE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND-FNSSIPQWLLNISKLAH  270 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~  270 (467)
                      +|++|++++|.++...+   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+.
T Consensus        33 ~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             TCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            44444444444443321   134555666666666666666656666666777777777765 55444666666777777


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEE
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD  350 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~  350 (467)
                      |++++|.+++..+..+.++++|++|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..+.     +|++|+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~  183 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-----SLDRLL  183 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEE
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-----ccCEEE
Confidence            77777777666666667777777777777776 444445566777777777777777655554454444     777777


Q ss_pred             CcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcc
Q 038320          351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG  430 (467)
Q Consensus       351 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~  430 (467)
                      +++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+..
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c  262 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPC  262 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBE
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCcccc
Confidence            7777777777777777888888888888887655566777888888888888776543211 111224444566677777


Q ss_pred             cCChhhhCC--CCCCCEEeccCC
Q 038320          431 LVTEVHFSK--LKNLKELHIAKY  451 (467)
Q Consensus       431 ~~~~~~~~~--l~~L~~l~l~~n  451 (467)
                      ..|. .+.+  +..++..++.+|
T Consensus       263 ~~p~-~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          263 SLPQ-RLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             EESG-GGTTCBGGGSCGGGSCCC
T ss_pred             CCch-HhCCcChhhcCHHHhccC
Confidence            7776 3433  344555566655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.8e-27  Score=222.89  Aligned_cols=244  Identities=22%  Similarity=0.229  Sum_probs=194.2

Q ss_pred             CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320          194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL  273 (467)
Q Consensus       194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  273 (467)
                      +.++.+++.++....      ...++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++
T Consensus        14 ~~~~c~~~~l~~ip~------~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV------GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSCCT------TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccCCc------CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            455566555554431      12468999999999999988888899999999999999988777888889999999999


Q ss_pred             cCCc-cccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320          274 SANN-LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG  352 (467)
Q Consensus       274 ~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  352 (467)
                      ++|. +....+..+..+++|++|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..++     +|++|+++
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~  161 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----NLTHLFLH  161 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-----CccEEECC
Confidence            9997 7766678888899999999999988 666677788899999999999988876666666655     89999999


Q ss_pred             CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320          353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      +|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            99888776667888899999999999988887888888899999999999988777777888899999999999887655


Q ss_pred             ChhhhCCCCCCCEEeccCC
Q 038320          433 TEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       433 ~~~~~~~l~~L~~l~l~~n  451 (467)
                      +...+  ...++.+..+.+
T Consensus       242 ~~~~~--~~~l~~~~~~~~  258 (285)
T 1ozn_A          242 RARPL--WAWLQKFRGSSS  258 (285)
T ss_dssp             GGHHH--HHHHHHCCSEEC
T ss_pred             CcHHH--HHHHHhcccccC
Confidence            43211  123444445555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=7e-27  Score=233.45  Aligned_cols=247  Identities=24%  Similarity=0.240  Sum_probs=167.7

Q ss_pred             CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320          142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS  221 (467)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~  221 (467)
                      .+.++.++..++ .+|..+.  +++++|++++|.++.++...   +.++++|++|++++|.+++..+   ..+..+++|+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIRQIEV---GAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCCEECT---TTTTTCTTCC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH---cCCCCCCCEEECCCCccCCcCh---hhccCcccCC
Confidence            457777777776 5676553  67888888888887765543   6677788888888887776542   3566777777


Q ss_pred             EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccccc-chhhhCCCCCCEEeCCCC
Q 038320          222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAFANMTSLRELDLSEN  300 (467)
Q Consensus       222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n  300 (467)
                      +|++++|.+.+.++..+..+++|++|++++|.++...+..+.++++|+.|++++|...+.+ +..+.++++|++|++++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            7777777777777666777777777777777776555556677777777777774433333 335667777777777777


Q ss_pred             CCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320          301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF  380 (467)
Q Consensus       301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  380 (467)
                      .+ . .+| .+..+++|+.|++++|.+++..+..+..+.     +|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus       207 ~l-~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          207 NI-K-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CC-S-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cc-c-ccc-cccccccccEEECcCCcCcccCcccccCcc-----CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            76 2 233 356666777777777776666666555554     667777777776666666666666777777777766


Q ss_pred             cccccccccCCCCCCEEECcCCcCc
Q 038320          381 RGSIPESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       381 ~~~~~~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      ++..+..+..+++|+.|+|++|.+.
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CccChHHhccccCCCEEEccCCCcC
Confidence            6555555666666777777666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.1e-27  Score=232.56  Aligned_cols=247  Identities=25%  Similarity=0.271  Sum_probs=166.7

Q ss_pred             CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320          142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS  221 (467)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~  221 (467)
                      .+.++.++..++ .+|..+.  ++++.|++++|.+..++...   +.++++|++|++++|.+....   ...+..+++|+
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~~i~---~~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNHIRTIE---IGAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT---TSSCSSCCEEECCSSCCCEEC---GGGGTTCSSCC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH---hhCCCCCCEEECCCCcCCccC---hhhccCCccCC
Confidence            456777777776 6776554  67888888888888776543   677778888888888777654   23566777777


Q ss_pred             EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccccc-chhhhCCCCCCEEeCCCC
Q 038320          222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAFANMTSLRELDLSEN  300 (467)
Q Consensus       222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n  300 (467)
                      +|++++|++++..+..+..+++|++|++++|.++...+..+.++++|+.|++++|...+.+ +..+.++++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            7777777777776666777777777777777776555556677777777777774433333 335667777777777777


Q ss_pred             CCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320          301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF  380 (467)
Q Consensus       301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  380 (467)
                      .+  ..+| .+..+++|+.|++++|.+++..+..+..+.     +|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus       196 ~l--~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          196 NL--REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-----HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CC--SSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             cC--cccc-ccCCCcccCEEECCCCccCccChhhhccCc-----cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            76  2333 355666677777776666665555555544     666666666666666666666666666666666666


Q ss_pred             cccccccccCCCCCCEEECcCCcCc
Q 038320          381 RGSIPESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       381 ~~~~~~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      ++..+..+..+++|+.|+|++|.+.
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhHhccccCCCEEEcCCCCcc
Confidence            6555555566666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.3e-27  Score=234.32  Aligned_cols=249  Identities=23%  Similarity=0.206  Sum_probs=163.6

Q ss_pred             cCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCC
Q 038320          165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSL  244 (467)
Q Consensus       165 ~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  244 (467)
                      ....++.++..++.+|..    +  .+++++|++++|.++...+   ..+..+++|++|++++|.+.+..+..+.++++|
T Consensus        55 ~~~~v~c~~~~l~~iP~~----~--~~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  125 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG----I--PSNTRYLNLMENNIQMIQA---DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL  125 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC----C--CTTCSEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCcEEEECCCCcCccCCC----C--CCCccEEECcCCcCceECH---HHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence            346778888888877765    2  2578888888888776653   356777788888888888877777777777888


Q ss_pred             cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320          245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG  324 (467)
Q Consensus       245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  324 (467)
                      ++|++++|.+++..+..+.++++|+.|++++|.+++..+..+.++++|+.|++++|.......+..+..+++|++|++++
T Consensus       126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            88888888777655566777777888888877777655666777777777777775442333333566667777777777


Q ss_pred             CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      |.+++..  .+..     +++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++
T Consensus       206 n~l~~~~--~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          206 CNIKDMP--NLTP-----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             SCCSSCC--CCTT-----CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             Ccccccc--cccc-----cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            7666431  1222     22566666666666655555666666666666666666655555566666666666666666


Q ss_pred             cccChhhhcCCCCCCEEeCcCCCCc
Q 038320          405 DGTIPKSLGKLSHLVVLDISGNPWI  429 (467)
Q Consensus       405 ~~~~p~~l~~l~~L~~L~l~~n~~~  429 (467)
                      ++..+..+..+++|+.|++++|++.
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CccChHHhccccCCCEEEccCCCcC
Confidence            5544455555666666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=231.39  Aligned_cols=250  Identities=22%  Similarity=0.218  Sum_probs=187.1

Q ss_pred             cCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCC
Q 038320          165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSL  244 (467)
Q Consensus       165 ~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  244 (467)
                      ..+.++.++..++.+|..    +  .++++.|++++|.+....+   ..+..+++|++|++++|.+.+..+..|.++++|
T Consensus        44 ~~~~v~c~~~~l~~iP~~----~--~~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L  114 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG----I--STNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL  114 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC----C--CTTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred             CCCEEEeCCCCcCcCCCC----C--CCCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence            356788888888888865    2  2678888998888877653   367788888888888888888888888888888


Q ss_pred             cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320          245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG  324 (467)
Q Consensus       245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  324 (467)
                      ++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|.......+..+..+++|++|++++
T Consensus       115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            88888888888666667888888888888888888666667888888888888885542333344677788888888888


Q ss_pred             CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      |.++.. |. +..     .++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++
T Consensus       195 n~l~~~-~~-~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          195 CNLREI-PN-LTP-----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             SCCSSC-CC-CTT-----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             CcCccc-cc-cCC-----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            877643 21 222     23777777777777776677777777777777777777776667777777777777777777


Q ss_pred             cccChhhhcCCCCCCEEeCcCCCCcc
Q 038320          405 DGTIPKSLGKLSHLVVLDISGNPWIG  430 (467)
Q Consensus       405 ~~~~p~~l~~l~~L~~L~l~~n~~~~  430 (467)
                      ++..+..+..+++|+.|++++|++..
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CccChhHhccccCCCEEEcCCCCccC
Confidence            76666666777777777777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.2e-25  Score=230.76  Aligned_cols=267  Identities=24%  Similarity=0.295  Sum_probs=223.5

Q ss_pred             CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC
Q 038320          114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL  193 (467)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L  193 (467)
                      ..++++|++++|.++  .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++.++.       .+++|
T Consensus        39 ~~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L  103 (622)
T 3g06_A           39 NNGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV-------LPPGL  103 (622)
T ss_dssp             HHCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC-------CCTTC
T ss_pred             CCCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC-------CCCCC
Confidence            346999999999998  4787665  89999999999998 6666   67899999999999988775       57899


Q ss_pred             CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320          194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL  273 (467)
Q Consensus       194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  273 (467)
                      ++|++++|.++....       .+++|+.|++++|.+++.+.    .+++|++|++++|.+++ +|.   .+++|+.|++
T Consensus       104 ~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L  168 (622)
T 3g06_A          104 LELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWA  168 (622)
T ss_dssp             CEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence            999999999988642       57899999999999988654    24899999999999985 444   3578999999


Q ss_pred             cCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcC
Q 038320          274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ  353 (467)
Q Consensus       274 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  353 (467)
                      ++|.+++ +|   ..+++|+.|++++|.+ . .+|.   .+++|+.|++++|.++... ..        +++|+.|++++
T Consensus       169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l-~-~l~~---~~~~L~~L~L~~N~l~~l~-~~--------~~~L~~L~Ls~  230 (622)
T 3g06_A          169 YNNQLTS-LP---MLPSGLQELSVSDNQL-A-SLPT---LPSELYKLWAYNNRLTSLP-AL--------PSGLKELIVSG  230 (622)
T ss_dssp             CSSCCSC-CC---CCCTTCCEEECCSSCC-S-CCCC---CCTTCCEEECCSSCCSSCC-CC--------CTTCCEEECCS
T ss_pred             CCCCCCC-Cc---ccCCCCcEEECCCCCC-C-CCCC---ccchhhEEECcCCcccccC-CC--------CCCCCEEEccC
Confidence            9999985 55   4678999999999998 3 3444   3479999999999988533 21        24899999999


Q ss_pred             CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCC
Q 038320          354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVT  433 (467)
Q Consensus       354 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  433 (467)
                      |++++ +|   ..+++|++|++++|.++ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.++
T Consensus       231 N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          231 NRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             SCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            99986 44   56789999999999998 5666   6789999999999998 789999999999999999999998877


Q ss_pred             hhhhC
Q 038320          434 EVHFS  438 (467)
Q Consensus       434 ~~~~~  438 (467)
                      . .+.
T Consensus       302 ~-~l~  305 (622)
T 3g06_A          302 Q-ALR  305 (622)
T ss_dssp             H-HHH
T ss_pred             H-HHH
Confidence            6 443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.7e-28  Score=232.77  Aligned_cols=205  Identities=22%  Similarity=0.171  Sum_probs=115.4

Q ss_pred             CCCCCcEEEccCCcCCCCcchhc--cCCCCCCEEeccCCccccccchhhhCC-----CCCCEEeCCCCCCCCCCCccccc
Q 038320          240 NFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQGNIPDAFANM-----TSLRELDLSENSLIGGQIPKDLG  312 (467)
Q Consensus       240 ~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~l~  312 (467)
                      ++++|++|++++|.+++.+|..+  ..+++|+.|++++|.+++. |..++.+     ++|++|++++|++ .+..+..++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhc
Confidence            35555555555555555555543  5555556666655555544 4444444     5666666666665 444445555


Q ss_pred             CCCCCCEEeccCCcCCCch--hhHHHhhhcccCCCccEEECcCCCCCcC---CCccccCCCCCCEEEccCCcCccccc-c
Q 038320          313 SLCNLWDLDLSGNDLDGEI--IEFVDRLSKCANSSLESLDLGQNNLGGF---LPNSLGQLENLKILQLWGNLFRGSIP-E  386 (467)
Q Consensus       313 ~l~~L~~L~l~~n~l~~~~--~~~l~~~~~~~~~~L~~L~L~~n~i~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~-~  386 (467)
                      .+++|++|++++|.+.+..  +..+   ....+++|++|++++|++++.   ....+..+++|++|++++|.+++..| .
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISAL---CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHS---CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHH---HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            6666666666666655432  1111   111223566666666666521   11233455666666666666665543 3


Q ss_pred             cccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          387 SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       387 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      .+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |.  +..+++|+.|++++|++++
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCC
Confidence            3445666777777777766 5565554  6677777777776655 33  5666777777777776653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=4.4e-29  Score=258.15  Aligned_cols=334  Identities=13%  Similarity=0.095  Sum_probs=221.8

Q ss_pred             CCCCCCEEeCCCCCCCCCC---CCcccCCCCCCCEEEcCCCcCC----CCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320          113 DLKHLNYLDLSLNNFRGSR---IPNFLGSLEKLRYLNLSGASFA----GNIPPSFGNLSSLQILDLNTFYYSSLESDDVE  185 (467)
Q Consensus       113 ~l~~L~~L~L~~n~i~~~~---~~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~  185 (467)
                      .+++|++|+|++|.+++..   ++.....+++|++|++++|.++    +.++..+.++++|++|++++|.+..++.    
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~----  237 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG----  237 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH----
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH----
Confidence            5566666666666554331   1223344556666666666554    1223333455666666666655544332    


Q ss_pred             hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccC
Q 038320          186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLN  264 (467)
Q Consensus       186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~  264 (467)
                      .+..+++|++|+++..............+..+++|+.|+++++. ....+..+..+++|++|++++|.+++... ..+.+
T Consensus       238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence            24556666666665432221111223455667778888777643 33345566778899999999998765433 44678


Q ss_pred             CCCCCEEeccCCccccccchhhhCCCCCCEEeCCC-----------CCCCCCC-CcccccCCCCCCEEeccCCcCCCchh
Q 038320          265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE-----------NSLIGGQ-IPKDLGSLCNLWDLDLSGNDLDGEII  332 (467)
Q Consensus       265 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~  332 (467)
                      +++|+.|+++++...+.++.....+++|++|++++           +.+ ++. +......+++|++|+++.+.+++..+
T Consensus       317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-SQRGLIALAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-CHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred             CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-CHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence            89999999984433334455557789999999994           444 322 33334568999999999999998877


Q ss_pred             hHHHhhhcccCCCccEEECc----CCCCCcC-----CCccccCCCCCCEEEccCCc--Cccccccccc-CCCCCCEEECc
Q 038320          333 EFVDRLSKCANSSLESLDLG----QNNLGGF-----LPNSLGQLENLKILQLWGNL--FRGSIPESIG-NLSSLRELYLH  400 (467)
Q Consensus       333 ~~l~~~~~~~~~~L~~L~L~----~n~i~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~l~-~~~~L~~L~Ls  400 (467)
                      ..+....    ++|+.|+++    .|.+++.     ++..+..+++|++|++++|.  +++..+..+. .+++|++|+++
T Consensus       396 ~~l~~~~----~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~  471 (592)
T 3ogk_B          396 ESIGTYL----KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG  471 (592)
T ss_dssp             HHHHHHC----CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred             HHHHhhC----CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence            7776521    389999996    5677753     33346678999999998654  6665555544 48999999999


Q ss_pred             CCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320          401 NNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR  456 (467)
Q Consensus       401 ~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~  456 (467)
                      +|.+++. ++..+..+++|++|++++|++++.........+++|+.|++++|++++.
T Consensus       472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9999874 5566688999999999999987654443456789999999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.6e-28  Score=233.02  Aligned_cols=203  Identities=22%  Similarity=0.289  Sum_probs=141.5

Q ss_pred             CCCCCEEECCCCcCcccCCccc--cCCCCCcEEEccCCcCCCCcchhccCC-----CCCCEEeccCCccccccchhhhCC
Q 038320          217 LPSLSELHLPACGLFEFPPLSV--VNFSSLLFLDLSSNDFNSSIPQWLLNI-----SKLAHLDLSANNLQGNIPDAFANM  289 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l  289 (467)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3444444444444444444433  5566666666666666654 5545444     677777777777766666667777


Q ss_pred             CCCCEEeCCCCCCCCCC--Ccccc--cCCCCCCEEeccCCcCCCch--h-hHHHhhhcccCCCccEEECcCCCCCcCCC-
Q 038320          290 TSLRELDLSENSLIGGQ--IPKDL--GSLCNLWDLDLSGNDLDGEI--I-EFVDRLSKCANSSLESLDLGQNNLGGFLP-  361 (467)
Q Consensus       290 ~~L~~L~L~~n~l~~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~--~-~~l~~~~~~~~~~L~~L~L~~n~i~~~~~-  361 (467)
                      ++|++|++++|++ .+.  .+..+  ..+++|++|++++|.+++..  + ..+..+     ++|++|++++|++++..| 
T Consensus       173 ~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          173 PALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-----VQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             SSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-----CCCSEEECTTSCCCSSCCC
T ss_pred             CCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-----CCCCEEECCCCcCCcccch
Confidence            7777777777765 332  22233  67788888888888887422  2 122233     389999999999988764 


Q ss_pred             ccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320          362 NSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       362 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            45667899999999999998 7787766  8999999999999865 65 88999999999999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=6.6e-28  Score=229.30  Aligned_cols=249  Identities=22%  Similarity=0.191  Sum_probs=137.0

Q ss_pred             cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320          101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE  180 (467)
Q Consensus       101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~  180 (467)
                      +.+...+...+..+++|++|++++|.+++. .|..+.++++|++|++++|.+++..+  +..+++|++|++++|.++.++
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~   96 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL   96 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc
Confidence            445444444455667788888888877754 55677777788888888777764433  667777777777776654422


Q ss_pred             CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320          181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ  260 (467)
Q Consensus       181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  260 (467)
                              ..++                           |++|++++|.+.+..+.   .+++|++|++++|.+++..+.
T Consensus        97 --------~~~~---------------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~  138 (317)
T 3o53_A           97 --------VGPS---------------------------IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL  138 (317)
T ss_dssp             --------ECTT---------------------------CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred             --------CCCC---------------------------cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence                    2234                           44444444444443322   245566666666666655555


Q ss_pred             hccCCCCCCEEeccCCccccccchhh-hCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          261 WLLNISKLAHLDLSANNLQGNIPDAF-ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       261 ~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      .+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+ ++ ++ ....+++|++|++++|.+++..+. +..++
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~  214 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD-VK-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAA  214 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE-EE-CCCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cc-cc-cccccccCCEEECCCCcCCcchhh-hcccC
Confidence            55566666666666666665555444 3566677777777666 22 22 122355555555555555533222 22222


Q ss_pred             cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECc
Q 038320          340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLH  400 (467)
Q Consensus       340 ~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls  400 (467)
                           +|++|++++|++++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.++++
T Consensus       215 -----~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          215 -----GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             -----TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             -----cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence                 45555555555542 3334444455555555555544 3444444444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=2.9e-25  Score=206.05  Aligned_cols=218  Identities=25%  Similarity=0.305  Sum_probs=135.4

Q ss_pred             CCCCCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCC
Q 038320           63 EDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKL  142 (467)
Q Consensus        63 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L  142 (467)
                      .++|.|.|+.|... +.++.+++++             +.++. +|..+.  +++++|++++|++++. .+..+.++++|
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~-------------~~l~~-ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L   63 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSS-------------KKLTA-IPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKL   63 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTT-------------SCCSS-CCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccC-------------CCCCc-cCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCC
Confidence            47899999888632 3456677776             55553 444333  5788888888887754 45577778888


Q ss_pred             CEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCE
Q 038320          143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE  222 (467)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~  222 (467)
                      ++|++++|.++...+..+.++++|++|++++|.+..++...   +..+++|++|++++|.+                   
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l-------------------  121 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV---FDQLVNLAELRLDRNQL-------------------  121 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT---TTTCSSCCEEECCSSCC-------------------
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH---cccccCCCEEECCCCcc-------------------
Confidence            88888888877444445577777777777777776655432   34445555555555544                   


Q ss_pred             EECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320          223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL  302 (467)
Q Consensus       223 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  302 (467)
                              .+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       122 --------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          122 --------KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             --------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence                    444444455555555555555555544444455566666666666666554445556666666666666666


Q ss_pred             CCCCCcccccCCCCCCEEeccCCcCCC
Q 038320          303 IGGQIPKDLGSLCNLWDLDLSGNDLDG  329 (467)
Q Consensus       303 ~~~~~~~~l~~l~~L~~L~l~~n~l~~  329 (467)
                       .+..+..+..+++|+.|++++|.+..
T Consensus       194 -~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          194 -KRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             -SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -CcCCHHHhccccCCCEEEecCCCeeC
Confidence             44334445666667777777666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=9e-28  Score=228.38  Aligned_cols=257  Identities=18%  Similarity=0.122  Sum_probs=143.9

Q ss_pred             CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320          142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS  221 (467)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~  221 (467)
                      ++..+++.+.+...+...+..+++|++|++++|.++.+++.   .+..+++|++|++++|.+++..     .+..+++|+
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~   83 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA---DLAPFTKLELLNLSSNVLYETL-----DLESLSTLR   83 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH---HHTTCTTCCEEECTTSCCEEEE-----EETTCTTCC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH---HhhCCCcCCEEECCCCcCCcch-----hhhhcCCCC
Confidence            44455555555433334445566777777777777665432   2566677777777777665442     255666666


Q ss_pred             EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCC
Q 038320          222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS  301 (467)
Q Consensus       222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  301 (467)
                      +|++++|.+.+..     ..++|++|++++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus        84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             EEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            7776666665433     225666666666666543332   24556666666666665555555566666666666666


Q ss_pred             CCCCCCcccc-cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320          302 LIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF  380 (467)
Q Consensus       302 l~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  380 (467)
                      + .+..+..+ ..+++|++|++++|.+++.....       ..++|++|++++|++++. +..+..+++|++|++++|.+
T Consensus       156 l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          156 I-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             C-CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCC
T ss_pred             C-CcccHHHHhhccCcCCEEECCCCcCccccccc-------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcc
Confidence            5 33333333 24556666666666655431111       122556666666655533 23355555566666666655


Q ss_pred             cccccccccCCCCCCEEECcCCcCc-ccChhhhcCCCCCCEEeCc
Q 038320          381 RGSIPESIGNLSSLRELYLHNNLMD-GTIPKSLGKLSHLVVLDIS  424 (467)
Q Consensus       381 ~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~  424 (467)
                      + .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.++++
T Consensus       227 ~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             C-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             c-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            5 34555555555666666666555 4455555555555555555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=232.83  Aligned_cols=239  Identities=23%  Similarity=0.188  Sum_probs=141.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      ...+++|++|+|++|.+++. .|..++.+++|++|++++|.+++..|  +..+++|++|++++|.++.++        ..
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--------~~   98 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------VG   98 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE--------EC
T ss_pred             cccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC--------CC
Confidence            34455788888888888765 56778888888888888888875544  777777787777777765432        22


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      ++|++|++++|.++                           +.++.   .+++|+.|++++|.+++..|..+.++++|+.
T Consensus        99 ~~L~~L~L~~N~l~---------------------------~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  148 (487)
T 3oja_A           99 PSIETLHAANNNIS---------------------------RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (487)
T ss_dssp             TTCCEEECCSSCCC---------------------------CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred             CCcCEEECcCCcCC---------------------------CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence            44555555554444                           33322   2345666666666666555555566666666


Q ss_pred             EeccCCccccccchhhh-CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEE
Q 038320          271 LDLSANNLQGNIPDAFA-NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL  349 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L  349 (467)
                      |++++|.+++..|..+. .+++|++|++++|.+ ++. + ....+++|+.|++++|.+++.++. +..++     +|+.|
T Consensus       149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-----~L~~L  219 (487)
T 3oja_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAA-----GVTWI  219 (487)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGT-----TCSEE
T ss_pred             EECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCC-----CccEE
Confidence            66666666665555554 566666666666666 222 2 222455666666666666543333 33333     56666


Q ss_pred             ECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECc
Q 038320          350 DLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLH  400 (467)
Q Consensus       350 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls  400 (467)
                      ++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       220 ~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            666666553 3444555556666666666555 4444555555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=1.3e-28  Score=254.65  Aligned_cols=307  Identities=14%  Similarity=0.071  Sum_probs=188.3

Q ss_pred             CCCCCCEEEcCCCcCCCC----CCccCCCCCcCCeeeccCccCCCCCCCCh-hhcCCCCCCCEEECCCcCCCCCCCchhh
Q 038320          138 SLEKLRYLNLSGASFAGN----IPPSFGNLSSLQILDLNTFYYSSLESDDV-EWLSRLSSLQYLNLEGVDLSKAGSSWVQ  212 (467)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~  212 (467)
                      ++++|++|++++|.+++.    ++..+.++++|++|++++|.++.+....+ ..+.++++|++|++++|.+.+.    +.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l----~~  237 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL----VG  237 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG----HH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH----HH
Confidence            445555555555544332    12223344555555555555443222211 1123455555555555544432    22


Q ss_pred             hcCCCCCCCEEECCCCcCc---ccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc-hhhhC
Q 038320          213 ATNMLPSLSELHLPACGLF---EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFAN  288 (467)
Q Consensus       213 ~~~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~  288 (467)
                      .+..+++|++|+++.+...   ......+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..
T Consensus       238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence            3444555555555432211   1222344555666666666542 24566667777888888888887654433 34577


Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc-----------CCcCCCchhhHHHhhhcccCCCccEEECcCCCCC
Q 038320          289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS-----------GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG  357 (467)
Q Consensus       289 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~-----------~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~  357 (467)
                      +++|++|+++ +.+..+.++.....+++|++|+++           .+.+++.....+..    .+++|++|+++.+.++
T Consensus       317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~l~  391 (592)
T 3ogk_B          317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ----GCQELEYMAVYVSDIT  391 (592)
T ss_dssp             CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH----HCTTCSEEEEEESCCC
T ss_pred             CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh----hCccCeEEEeecCCcc
Confidence            8888888887 333133344444667889999988           35666544433322    1248999999888888


Q ss_pred             cCCCccccC-CCCCCEEEcc----CCcCccc-----ccccccCCCCCCEEECcCCc--CcccChhhhc-CCCCCCEEeCc
Q 038320          358 GFLPNSLGQ-LENLKILQLW----GNLFRGS-----IPESIGNLSSLRELYLHNNL--MDGTIPKSLG-KLSHLVVLDIS  424 (467)
Q Consensus       358 ~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~l~  424 (467)
                      +..+..+.. +++|++|+++    .|.+++.     ++..+..+++|++|++++|.  +++..+..+. .+++|++|+++
T Consensus       392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~  471 (592)
T 3ogk_B          392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG  471 (592)
T ss_dssp             HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred             HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence            766666655 8899999996    5667653     44446678999999998654  7766665554 48999999999


Q ss_pred             CCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          425 GNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       425 ~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      +|++++......+..+++|+.|++++|+++
T Consensus       472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             SCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             CCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            999887443336788999999999999765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4e-28  Score=251.10  Aligned_cols=352  Identities=17%  Similarity=0.164  Sum_probs=231.6

Q ss_pred             CEEEEEcCCCCCCCCcCCCCcccccccccCcccc-CCCCCCEEeCCCC-CCCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVL-DLKHLNYLDLSLN-NFRGSRIPNFLGSLEKLRYLNLSGASFAGNI  156 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  156 (467)
                      +++.+++++             +.+++..+..+. .+++|++|++++| .+++..++..+.++++|++|++++|.+++..
T Consensus       106 ~L~~L~L~~-------------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~  172 (594)
T 2p1m_B          106 WLEEIRLKR-------------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS  172 (594)
T ss_dssp             TCCEEEEES-------------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred             CCCeEEeeC-------------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence            566666666             666666555554 5788888888877 4443224444556788888888888766443


Q ss_pred             Cc----cCCCCCcCCeeeccCccCCCCCCCChhh-cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc--
Q 038320          157 PP----SFGNLSSLQILDLNTFYYSSLESDDVEW-LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG--  229 (467)
Q Consensus       157 p~----~l~~l~~L~~L~l~~n~~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~--  229 (467)
                      +.    ....+++|++|++++|. ..+....+.. ...+++|++|++++|.....   .+..+..+++|++|+++.+.  
T Consensus       173 ~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~  248 (594)
T 2p1m_B          173 GHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTGGYTAE  248 (594)
T ss_dssp             GGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECSBCCCC
T ss_pred             hHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccccccCc
Confidence            32    23467788888888776 3333222222 24567888888887721111   23344455666666644331  


Q ss_pred             ------------------------Ccc----cCCccccCCCCCcEEEccCCcCCCCc-chhccCCCCCCEEeccCCcccc
Q 038320          230 ------------------------LFE----FPPLSVVNFSSLLFLDLSSNDFNSSI-PQWLLNISKLAHLDLSANNLQG  280 (467)
Q Consensus       230 ------------------------~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~  280 (467)
                                              +.+    ..+..+..+++|++|++++|.+++.. ...+.++++|+.|++++| +.+
T Consensus       249 ~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~  327 (594)
T 2p1m_B          249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED  327 (594)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred             cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence                                    111    12222335788999999998866432 233568899999999988 432


Q ss_pred             c-cchhhhCCCCCCEEeCCC---------CCCCCCCCcccc-cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEE
Q 038320          281 N-IPDAFANMTSLRELDLSE---------NSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL  349 (467)
Q Consensus       281 ~-~~~~l~~l~~L~~L~L~~---------n~l~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L  349 (467)
                      . ++.....+++|++|++.+         +.+ ++.....+ ..+++|+.|.++.+.+++..+..+...    +++|+.|
T Consensus       328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l-~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L  402 (594)
T 2p1m_B          328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRF  402 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC-CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEE
T ss_pred             HHHHHHHHhCCCCCEEEEecCcccccccCCCC-CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCccee
Confidence            2 333344689999998843         333 22222223 348899999998899887776666532    2389999


Q ss_pred             ECc--C----CCCCcC-----CCccccCCCCCCEEEccCCcCcccccccccC-CCCCCEEECcCCcCcccChhhh-cCCC
Q 038320          350 DLG--Q----NNLGGF-----LPNSLGQLENLKILQLWGNLFRGSIPESIGN-LSSLRELYLHNNLMDGTIPKSL-GKLS  416 (467)
Q Consensus       350 ~L~--~----n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~Ls~n~l~~~~p~~l-~~l~  416 (467)
                      +++  +    +.+++.     ++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..++
T Consensus       403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence            999  3    456532     222356788999999987 676665555655 8999999999999987766655 6799


Q ss_pred             CCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          417 HLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       417 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      +|++|++++|++++.........+++|+.|++++|+++
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            99999999999865554434556899999999999774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.9e-25  Score=222.22  Aligned_cols=238  Identities=22%  Similarity=0.211  Sum_probs=189.5

Q ss_pred             CCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320          188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK  267 (467)
Q Consensus       188 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  267 (467)
                      ..+++|++|++++|.+++..   +..+..+++|+.|++++|.+++.++  +..+++|++|++++|.+++..     ..++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~  100 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS  100 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred             ccCCCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCC
Confidence            34558999999999988876   3467888999999999999887665  788899999999999887432     2378


Q ss_pred             CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHH-hhhcccCCCc
Q 038320          268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD-RLSKCANSSL  346 (467)
Q Consensus       268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~~~~~~~~~L  346 (467)
                      |+.|++++|.+++..+.   .+++|+.|++++|.+ ++..+..++.+++|+.|++++|.+++..|..+. .++     +|
T Consensus       101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-----~L  171 (487)
T 3oja_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-----TL  171 (487)
T ss_dssp             CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-----TC
T ss_pred             cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-----cc
Confidence            99999999988866554   467889999999988 667777888888999999999998887776665 344     89


Q ss_pred             cEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320          347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       347 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  426 (467)
                      ++|++++|.+++..  ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus       172 ~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          172 EHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             cEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence            99999999888662  33458889999999999885 44458888899999999999884 7777888889999999999


Q ss_pred             CCc-ccCChhhhCCCCCCCEEecc
Q 038320          427 PWI-GLVTEVHFSKLKNLKELHIA  449 (467)
Q Consensus       427 ~~~-~~~~~~~~~~l~~L~~l~l~  449 (467)
                      ++. +.+|. .+..++.|+.++++
T Consensus       248 ~l~c~~~~~-~~~~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRD-FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred             CCcCcchHH-HHHhCCCCcEEecc
Confidence            888 55555 67788888887775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.6e-24  Score=197.64  Aligned_cols=189  Identities=25%  Similarity=0.289  Sum_probs=117.5

Q ss_pred             hcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCC
Q 038320          213 ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL  292 (467)
Q Consensus       213 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  292 (467)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..++.+++|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            34445555566666665555555556666666666666666665555566666666666666666665555456667777


Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc----EEECcCCCCCcCCCccccCCC
Q 038320          293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE----SLDLGQNNLGGFLPNSLGQLE  368 (467)
Q Consensus       293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~----~L~L~~n~i~~~~~~~l~~l~  368 (467)
                      ++|++++|.+....+|..+..+++|++|++++|.+++..+..+..+.     +|+    .|++++|.+++..+..+. ..
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~l~l~L~ls~n~l~~~~~~~~~-~~  200 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-----QMPLLNLSLDLSLNPMNFIQPGAFK-EI  200 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-----TCTTCCEEEECCSSCCCEECTTSSC-SC
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-----hccccceeeecCCCcccccCccccC-CC
Confidence            77777777762223566677777777777777777766555555554     444    677777777654443333 33


Q ss_pred             CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc
Q 038320          369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT  407 (467)
Q Consensus       369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  407 (467)
                      +|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            677777777776654444456666777777777666643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.2e-24  Score=197.82  Aligned_cols=209  Identities=25%  Similarity=0.296  Sum_probs=166.9

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeC
Q 038320          218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDL  297 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  297 (467)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|+.|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46888888888888888878889999999999999988766677888999999999999998877788889999999999


Q ss_pred             CCCCCCCCCCcccccCCCCCCEEeccCCcCCCc-hhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC----E
Q 038320          298 SENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE-IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK----I  372 (467)
Q Consensus       298 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~  372 (467)
                      ++|.+ .+..+..+..+++|++|++++|.+++. .|..+..++     +|++|++++|++++..+..+..+++|+    +
T Consensus       108 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          108 VETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             TTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred             CCCCc-cccCchhcccCCCCCEEECcCCccceecCchhhccCC-----CCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence            99988 555555688888999999999888763 466666665     888888888888877666666666665    7


Q ss_pred             EEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCC
Q 038320          373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVT  433 (467)
Q Consensus       373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  433 (467)
                      |++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       182 L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            8888888875444433 44578888888888886666667788888888888888876554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.3e-23  Score=193.20  Aligned_cols=205  Identities=26%  Similarity=0.332  Sum_probs=149.2

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeC
Q 038320          218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDL  297 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  297 (467)
                      ...+.++++++.++..+. .+  .+++++|++++|.+++..+..+.++++|+.|++++|.++...+..+.++++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            356788888888776433 22  257888888888887666667778888888888888887555556677888888888


Q ss_pred             CCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccC
Q 038320          298 SENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG  377 (467)
Q Consensus       298 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  377 (467)
                      ++|.+ .+..+..+..+++|++|++++|.+++..+..+..++     +|++|++++|.+++..+..+..+++|++|++++
T Consensus        93 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           93 TDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----CCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            88887 555555667778888888888877776665555554     778888888877766666677777788888887


Q ss_pred             CcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320          378 NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       378 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      |.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            777765555677777788888877777765555677777777888877776544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.3e-24  Score=201.84  Aligned_cols=136  Identities=29%  Similarity=0.336  Sum_probs=53.8

Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320          239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW  318 (467)
Q Consensus       239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  318 (467)
                      ..+++|++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|.+ ++..+..+..+++|+
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~  160 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLT  160 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCC
Confidence            3334444444444444433333334444444444444444433333334444444444444444 222222333344444


Q ss_pred             EEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320          319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF  380 (467)
Q Consensus       319 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  380 (467)
                      .|++++|.+++..+..+..++     +|++|++++|++++..+..+..+++|++|++++|.+
T Consensus       161 ~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          161 ELDLSYNQLQSLPEGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCCcCccCHHHhcCCc-----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            444444433333222222222     344444444444433333344444444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.2e-23  Score=195.35  Aligned_cols=210  Identities=26%  Similarity=0.327  Sum_probs=175.2

Q ss_pred             CCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCE
Q 038320          215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE  294 (467)
Q Consensus       215 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  294 (467)
                      ..+++|+.|++++|.+....  .+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            34566677777776665432  46778888999999988875 3 46888999999999999999877777899999999


Q ss_pred             EeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEE
Q 038320          295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQ  374 (467)
Q Consensus       295 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  374 (467)
                      |++++|.+ .+..+..+..+++|++|++++|.+++..+..+..++     +|++|++++|++++..+..+..+++|++|+
T Consensus       114 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          114 LVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             EECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCcC-CccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----cCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            99999998 666666788999999999999999987776666655     899999999999988777788999999999


Q ss_pred             ccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCC
Q 038320          375 LWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKN  442 (467)
Q Consensus       375 l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  442 (467)
                      +++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.++++.|.++|.+|. .++.++.
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~-~~~~~~~  247 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN-SAGSVAP  247 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC-TTSCBCG
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC-cccccCC
Confidence            99999998777778899999999999998874       466899999999999999988 5666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=2.5e-25  Score=217.55  Aligned_cols=238  Identities=20%  Similarity=0.219  Sum_probs=144.7

Q ss_pred             cCCCCCCCEEECCCCc---CcccCCccc-------cCCCCCcEEEccCCcCCC----CcchhccCCCCCCEEeccCCccc
Q 038320          214 TNMLPSLSELHLPACG---LFEFPPLSV-------VNFSSLLFLDLSSNDFNS----SIPQWLLNISKLAHLDLSANNLQ  279 (467)
Q Consensus       214 ~~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~  279 (467)
                      +..+++|++|++++|.   +.+.+|..+       ..+++|++|++++|.+++    .++..+..+++|+.|++++|.++
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            4445555555555542   223333222       566777777777777765    35666677777777777777775


Q ss_pred             cccchhh----hCC---------CCCCEEeCCCCCCCCCCCc---ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320          280 GNIPDAF----ANM---------TSLRELDLSENSLIGGQIP---KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN  343 (467)
Q Consensus       280 ~~~~~~l----~~l---------~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  343 (467)
                      +..+..+    ..+         ++|++|++++|.+....++   ..+..+++|++|++++|.++......+........
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence            4333333    233         7778888887777323444   35566777788888877776433222222111223


Q ss_pred             CCccEEECcCCCCC----cCCCccccCCCCCCEEEccCCcCccc----cccccc--CCCCCCEEECcCCcCcc----cCh
Q 038320          344 SSLESLDLGQNNLG----GFLPNSLGQLENLKILQLWGNLFRGS----IPESIG--NLSSLRELYLHNNLMDG----TIP  409 (467)
Q Consensus       344 ~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~--~~~~L~~L~Ls~n~l~~----~~p  409 (467)
                      ++|++|++++|.++    +.+|..+..+++|++|++++|.+++.    ++..+.  .+++|++|+|++|.+++    .+|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            37778888777775    44566777777888888888877754    455553  37788888888888876    367


Q ss_pred             hhh-cCCCCCCEEeCcCCCCcccCC--hhhhCCCCCCCEEeccCC
Q 038320          410 KSL-GKLSHLVVLDISGNPWIGLVT--EVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       410 ~~l-~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~l~l~~n  451 (467)
                      ..+ .++++|+.|++++|++++..+  ......++.++..++..+
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            666 557888888888888776663  212223344444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=5.2e-25  Score=215.30  Aligned_cols=240  Identities=22%  Similarity=0.223  Sum_probs=192.3

Q ss_pred             hhcCCCCCCCEEECCCCcCcccCC----ccccCCCCCcEEEccCCc---CCCCcchhc-------cCCCCCCEEeccCCc
Q 038320          212 QATNMLPSLSELHLPACGLFEFPP----LSVVNFSSLLFLDLSSND---FNSSIPQWL-------LNISKLAHLDLSANN  277 (467)
Q Consensus       212 ~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~---l~~~~~~~l-------~~l~~L~~L~l~~n~  277 (467)
                      ..+..+++|++|++++|.+.+..+    ..+..+++|++|++++|.   +.+.+|..+       ..+++|+.|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            345567788888888888876543    346789999999999964   444556554       688999999999999


Q ss_pred             ccc----ccchhhhCCCCCCEEeCCCCCCCCCCCcc----cccCC---------CCCCEEeccCCcCCCchhh----HHH
Q 038320          278 LQG----NIPDAFANMTSLRELDLSENSLIGGQIPK----DLGSL---------CNLWDLDLSGNDLDGEIIE----FVD  336 (467)
Q Consensus       278 l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~l~~l---------~~L~~L~l~~n~l~~~~~~----~l~  336 (467)
                      +.+    .++..+..+++|++|++++|.+ +...+.    .+..+         ++|++|++++|.+++....    .+.
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            987    4777889999999999999998 433333    33344         8999999999999844333    333


Q ss_pred             hhhcccCCCccEEECcCCCCCc-----CCCccccCCCCCCEEEccCCcCc----ccccccccCCCCCCEEECcCCcCccc
Q 038320          337 RLSKCANSSLESLDLGQNNLGG-----FLPNSLGQLENLKILQLWGNLFR----GSIPESIGNLSSLRELYLHNNLMDGT  407 (467)
Q Consensus       337 ~~~~~~~~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~Ls~n~l~~~  407 (467)
                      ..+     +|++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|..+..+++|++|+|++|.+++.
T Consensus       185 ~~~-----~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          185 SHR-----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HCT-----TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hCC-----CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence            443     89999999999983     23447889999999999999996    57888899999999999999999876


Q ss_pred             ----ChhhhcC--CCCCCEEeCcCCCCcc----cCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320          408 ----IPKSLGK--LSHLVVLDISGNPWIG----LVTEVHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       408 ----~p~~l~~--l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                          ++..+..  +++|++|++++|++++    .++...+.++++|+.|++++|+++...
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                6677744  9999999999999998    477733467899999999999887554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=6.8e-24  Score=200.94  Aligned_cols=202  Identities=20%  Similarity=0.205  Sum_probs=106.0

Q ss_pred             CCCCCEEECCCCcCcccCCccc--cCCCCCcEEEccCCcCCCCcc----hhccCCCCCCEEeccCCccccccchhhhCCC
Q 038320          217 LPSLSELHLPACGLFEFPPLSV--VNFSSLLFLDLSSNDFNSSIP----QWLLNISKLAHLDLSANNLQGNIPDAFANMT  290 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  290 (467)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|+.|++++|.+.+..+..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3446666666666666666555  666677777777776665433    2334566666666666666655556666666


Q ss_pred             CCCEEeCCCCCCCCCC--C--cccccCCCCCCEEeccCCcCCCchhh---HHHhhhcccCCCccEEECcCCCCCcCCCcc
Q 038320          291 SLRELDLSENSLIGGQ--I--PKDLGSLCNLWDLDLSGNDLDGEIIE---FVDRLSKCANSSLESLDLGQNNLGGFLPNS  363 (467)
Q Consensus       291 ~L~~L~L~~n~l~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~  363 (467)
                      +|++|++++|++ .+.  +  +..+..+++|++|++++|.++.....   .+..+.     +|++|++++|++++..|..
T Consensus       170 ~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-----~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          170 ALTSLDLSDNPG-LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-----QPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             TCCEEECCSCTT-CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-----CCSSEECTTSCCCCCCCSC
T ss_pred             CCCEEECCCCCC-ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-----CCCEEECCCCCCCccchhh
Confidence            666666666665 221  1  11234566666666666666532111   112222     5566666666555554444


Q ss_pred             ccCC---CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCc
Q 038320          364 LGQL---ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI  429 (467)
Q Consensus       364 l~~l---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  429 (467)
                      +..+   ++|++|++++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            4433   35555555555554 3344332  4444444444444421 11 233444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=7e-25  Score=212.38  Aligned_cols=234  Identities=22%  Similarity=0.187  Sum_probs=111.6

Q ss_pred             EEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCC-hhhcCCCC-CCCEEECCCcCCCCCCCch-hhhcCCC-CCC
Q 038320          145 LNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDD-VEWLSRLS-SLQYLNLEGVDLSKAGSSW-VQATNML-PSL  220 (467)
Q Consensus       145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~-~~~l~~l~-~L~~L~L~~n~~~~~~~~~-~~~~~~l-~~L  220 (467)
                      ++++.|.+++.+|..+...++|++|++++|.++..+... ...+..++ +|++|++++|.+++..... ...+... ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            344555555444444444444555555555544333211 01234444 5555555555555443221 1112222 677


Q ss_pred             CEEECCCCcCcccCCcccc----CC-CCCcEEEccCCcCCCCcchhc----cC-CCCCCEEeccCCcccccc----chhh
Q 038320          221 SELHLPACGLFEFPPLSVV----NF-SSLLFLDLSSNDFNSSIPQWL----LN-ISKLAHLDLSANNLQGNI----PDAF  286 (467)
Q Consensus       221 ~~L~l~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~~l  286 (467)
                      ++|++++|.+++..+..+.    .+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            7777777777665554332    22 566666666666655444332    22 246666666666665422    2223


Q ss_pred             hCCC-CCCEEeCCCCCCCCCCCcc----cccCC-CCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCC
Q 038320          287 ANMT-SLRELDLSENSLIGGQIPK----DLGSL-CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL  360 (467)
Q Consensus       287 ~~l~-~L~~L~L~~n~l~~~~~~~----~l~~l-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~  360 (467)
                      ..++ +|++|++++|.+ ++..+.    .+..+ ++|++|++++|.+++.....+........++|++|++++|.+++..
T Consensus       163 ~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             hcCCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            3443 566666666655 333332    22233 3566666666655553333332221111125555555555555432


Q ss_pred             C----ccccCCCCCCEEEccCCc
Q 038320          361 P----NSLGQLENLKILQLWGNL  379 (467)
Q Consensus       361 ~----~~l~~l~~L~~L~l~~n~  379 (467)
                      +    ..+..+++|++|++++|.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHhcCCCccEEEeccCC
Confidence            2    222344555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=9e-23  Score=191.03  Aligned_cols=204  Identities=27%  Similarity=0.293  Sum_probs=148.5

Q ss_pred             cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320          187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS  266 (467)
Q Consensus       187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  266 (467)
                      +.+++++++++++++.++.....    +  .++++.|++++|.+.+..+..+..+++|++|++++|.+++. +. ...++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCT
T ss_pred             ccccCCccEEECCCCCCCcCCCC----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCC
Confidence            56778888888888888766432    2  25788888888888877777788888888888888887643 32 26777


Q ss_pred             CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCc
Q 038320          267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSL  346 (467)
Q Consensus       267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  346 (467)
                      +|+.|++++|.++ .+|..+..+++|++|++++|++ ++..+..+..+++|++|++++|++++..+..+..++     +|
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L  150 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KL  150 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TC
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-----CC
Confidence            8888888888776 5666677778888888888877 555556677777888888888777766555555444     77


Q ss_pred             cEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320          347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG  406 (467)
Q Consensus       347 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~  406 (467)
                      +.|++++|++++..+..+..+++|++|++++|.++ .+|..+...++|+.|++++|.+..
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            77777777777655556677777777777777777 566666677777777777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1e-24  Score=211.29  Aligned_cols=263  Identities=22%  Similarity=0.237  Sum_probs=188.1

Q ss_pred             eeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCC-CCCEEECCCCcCcccCCccccCC----
Q 038320          168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLP-SLSELHLPACGLFEFPPLSVVNF----  241 (467)
Q Consensus       168 ~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l----  241 (467)
                      ++++++|.++...+.   .+...++|++|++++|.+++.... +...+..++ +|++|++++|.+.+..+..+..+    
T Consensus         2 ~~~ls~n~~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGSNPVEE---FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTCCHHHH---HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccchHHHHH---HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            356677766543222   245556699999999998877531 124566777 89999999999988877666664    


Q ss_pred             -CCCcEEEccCCcCCCCcchhc----cCC-CCCCEEeccCCccccccchhhh----C-CCCCCEEeCCCCCCCCCCC---
Q 038320          242 -SSLLFLDLSSNDFNSSIPQWL----LNI-SKLAHLDLSANNLQGNIPDAFA----N-MTSLRELDLSENSLIGGQI---  307 (467)
Q Consensus       242 -~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~~---  307 (467)
                       ++|++|++++|.+++..+..+    ..+ ++|+.|++++|.+++..+..+.    . .++|++|++++|.+ ++..   
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~  157 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDE  157 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGSCHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHHHHHH
Confidence             889999999999887666533    344 7899999999998876655543    3 36899999999988 4332   


Q ss_pred             -cccccCCC-CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccC-CCCCCEEEccCCcC
Q 038320          308 -PKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQ-LENLKILQLWGNLF  380 (467)
Q Consensus       308 -~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~-l~~L~~L~l~~n~l  380 (467)
                       +..+..++ +|++|++++|.+++..+..+........++|++|++++|.+++.    ++..+.. .++|++|++++|.+
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence             33445555 89999999999888777766655222223899999999988863    3444444 45899999999988


Q ss_pred             ccccc----ccccCCCCCCEEECcCCcCccc-------ChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320          381 RGSIP----ESIGNLSSLRELYLHNNLMDGT-------IPKSLGKLSHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       381 ~~~~~----~~l~~~~~L~~L~Ls~n~l~~~-------~p~~l~~l~~L~~L~l~~n~~~~~~~~  434 (467)
                      ++..+    ..+..+++|+.|++++|.+.+.       ++..+..+++|+.||+++|++....+.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            86544    3346778899999999884432       334566788889999999988776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.9e-22  Score=188.80  Aligned_cols=205  Identities=24%  Similarity=0.199  Sum_probs=174.4

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCC
Q 038320          110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSR  189 (467)
Q Consensus       110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~  189 (467)
                      .+.+++++++++++++.++  .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.++.++.     ...
T Consensus         5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~   75 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGT   75 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----CSC
T ss_pred             cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----CCC
Confidence            4677889999999999888  4666554  689999999999987777889999999999999999887654     367


Q ss_pred             CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCC
Q 038320          190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA  269 (467)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  269 (467)
                      +++|++|++++|.++...    ..+..+++|++|++++|++++.++..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        76 l~~L~~L~Ls~N~l~~l~----~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSLP----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             CTTCCEEECCSSCCSSCC----CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCcCCEEECCCCcCCcCc----hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            889999999999988553    3567889999999999999988888899999999999999999877777788899999


Q ss_pred             EEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC
Q 038320          270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG  329 (467)
Q Consensus       270 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  329 (467)
                      .|++++|++++..+..+..+++|++|++++|++  ..+|..+...++|+.+++++|.+..
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCccC
Confidence            999999999866666778899999999999998  4677778888899999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=5.9e-26  Score=234.76  Aligned_cols=336  Identities=16%  Similarity=0.138  Sum_probs=223.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCC-cCCCC-CCccCCCCCcCCeeeccCccCCCCCCCChhhc
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGA-SFAGN-IPPSFGNLSSLQILDLNTFYYSSLESDDVEWL  187 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l  187 (467)
                      ...+++|++|+|++|.+++. .+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.++......+..+
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             HHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            35788999999999988765 444443 6899999999998 44422 44445579999999999998765443333323


Q ss_pred             -CCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcC-----------
Q 038320          188 -SRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF-----------  254 (467)
Q Consensus       188 -~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-----------  254 (467)
                       ..+++|++|++++|. ...... +......+++|++|++++|...+..+..+..+++|++|+++.+..           
T Consensus       180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  258 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS  258 (594)
T ss_dssp             CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred             hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence             378899999999987 222111 122234579999999999843333556667788888888655421           


Q ss_pred             ---------------C----CCcchhccCCCCCCEEeccCCccccccc-hhhhCCCCCCEEeCCCCCCCCCCCcccccCC
Q 038320          255 ---------------N----SSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSL  314 (467)
Q Consensus       255 ---------------~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  314 (467)
                                     .    +.++..+..+++|+.|++++|.+++... ..+..+++|++|++++| +....++.....+
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence                           1    1122233355777777777777654322 23456777777777776 3112222233357


Q ss_pred             CCCCEEecc---------CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcccc-CCCCCCEEEcc--C----C
Q 038320          315 CNLWDLDLS---------GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG-QLENLKILQLW--G----N  378 (467)
Q Consensus       315 ~~L~~L~l~---------~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~--~----n  378 (467)
                      ++|+.|+++         .+.+++.....+..    .+++|++|.+..+.+++.....+. .+++|+.|+++  +    +
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~----~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  413 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM----GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD  413 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH----HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHH----hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence            778888773         34555444443332    124888888888888765444444 58899999998  3    4


Q ss_pred             cCcc-----cccccccCCCCCCEEECcCCcCcccChhhhcC-CCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320          379 LFRG-----SIPESIGNLSSLRELYLHNNLMDGTIPKSLGK-LSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       379 ~l~~-----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      .+++     .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|+.|++++|+
T Consensus       414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~  492 (594)
T 2p1m_B          414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP  492 (594)
T ss_dssp             TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred             cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence            4542     2223356788999999987 777766666666 89999999999998776555233678999999999998


Q ss_pred             CC
Q 038320          453 LA  454 (467)
Q Consensus       453 i~  454 (467)
                      ++
T Consensus       493 ~~  494 (594)
T 2p1m_B          493 FG  494 (594)
T ss_dssp             CC
T ss_pred             Cc
Confidence            74

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=5.1e-24  Score=204.21  Aligned_cols=234  Identities=18%  Similarity=0.162  Sum_probs=154.4

Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCC
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA  269 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  269 (467)
                      ++++.|++++|.+.+..+    .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLA----EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TTCSEEECTTCEECSCCC----SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ccceEEEcCCccccccch----hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            344444444444444322    233466666666666666544 455566777777777777777766677777778888


Q ss_pred             EEeccCC-ccccc-cchhhhCCCCCCEEeCCCC-CCCCC-CCcccccCCC-CCCEEeccCC--cCC-CchhhHHHhhhcc
Q 038320          270 HLDLSAN-NLQGN-IPDAFANMTSLRELDLSEN-SLIGG-QIPKDLGSLC-NLWDLDLSGN--DLD-GEIIEFVDRLSKC  341 (467)
Q Consensus       270 ~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~~~~~  341 (467)
                      +|++++| .+++. ++..+..+++|++|++++| .+ ++ .++..+..++ +|++|++++|  .++ +..+..+..++  
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~--  222 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF-TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP--  222 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC-CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT--
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc-ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC--
Confidence            8888887 56542 5566777888888888888 66 33 2556677777 8888888888  455 33444445544  


Q ss_pred             cCCCccEEECcCCC-CCcCCCccccCCCCCCEEEccCCc-CcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320          342 ANSSLESLDLGQNN-LGGFLPNSLGQLENLKILQLWGNL-FRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV  419 (467)
Q Consensus       342 ~~~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  419 (467)
                         +|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +++.....+.  .+++
T Consensus       223 ---~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~  296 (336)
T 2ast_B          223 ---NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALP  296 (336)
T ss_dssp             ---TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHST
T ss_pred             ---CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCc
Confidence               78888888887 666666777888888888888884 33333335677888888888888 5544333332  2355


Q ss_pred             EEeCcCCCCcccCChhhhC
Q 038320          420 VLDISGNPWIGLVTEVHFS  438 (467)
Q Consensus       420 ~L~l~~n~~~~~~~~~~~~  438 (467)
                      .|++++|++++..|. .++
T Consensus       297 ~L~l~~n~l~~~~~~-~~~  314 (336)
T 2ast_B          297 HLQINCSHFTTIARP-TIG  314 (336)
T ss_dssp             TSEESCCCSCCTTCS-SCS
T ss_pred             ceEEecccCccccCC-ccc
Confidence            555788888887776 444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=3.7e-23  Score=195.92  Aligned_cols=231  Identities=19%  Similarity=0.141  Sum_probs=183.3

Q ss_pred             CCCCCEEECCCCcCcccCCc---cccCCCCCcEEEccCCcCCCCcchhc--cCCCCCCEEeccCCccccccc----hhhh
Q 038320          217 LPSLSELHLPACGLFEFPPL---SVVNFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQGNIP----DAFA  287 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~  287 (467)
                      ...++.+.+.++.+......   .+..+++|++|++++|.+++..|..+  ..+++|+.|++++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34577888888776542111   12235679999999999999998887  899999999999999987554    3456


Q ss_pred             CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC--CCc-cc
Q 038320          288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF--LPN-SL  364 (467)
Q Consensus       288 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~--~~~-~l  364 (467)
                      .+++|++|++++|.+ .+..+..++.+++|++|++++|.+.+...... ......+++|++|++++|+++..  .+. .+
T Consensus       143 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            799999999999999 77777889999999999999999875321100 01112334899999999999732  111 35


Q ss_pred             cCCCCCCEEEccCCcCcccccccccCC---CCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320          365 GQLENLKILQLWGNLFRGSIPESIGNL---SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       365 ~~l~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  441 (467)
                      ..+++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |.  +..++
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--~~~l~  294 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--PDELP  294 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--TTSCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--hhhCC
Confidence            788999999999999998878877776   79999999999998 7787764  8999999999999874 32  56789


Q ss_pred             CCCEEeccCCCCCC
Q 038320          442 NLKELHIAKYSLAP  455 (467)
Q Consensus       442 ~L~~l~l~~n~i~~  455 (467)
                      +|+.|++++|+|++
T Consensus       295 ~L~~L~L~~N~l~~  308 (310)
T 4glp_A          295 EVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCEECSSTTTSC
T ss_pred             CccEEECcCCCCCC
Confidence            99999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=3.8e-24  Score=205.10  Aligned_cols=248  Identities=22%  Similarity=0.214  Sum_probs=198.6

Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCC--CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCC-cchhccCCCCC
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNML--PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSS-IPQWLLNISKL  268 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L  268 (467)
                      .++.++++++.+..      ..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|
T Consensus        48 ~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           48 LWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            46788888777652      234444  7899999999999888765 56799999999999998865 78888999999


Q ss_pred             CEEeccCCccccccchhhhCCCCCCEEeCCCC-CCCCC-CCcccccCCCCCCEEeccCC-cCCCc-hhhHHHhhhcccCC
Q 038320          269 AHLDLSANNLQGNIPDAFANMTSLRELDLSEN-SLIGG-QIPKDLGSLCNLWDLDLSGN-DLDGE-IIEFVDRLSKCANS  344 (467)
Q Consensus       269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~~~~~~~~  344 (467)
                      ++|++++|.+++..+..++.+++|++|++++| .+ ++ .++..+..+++|++|++++| .+++. .+..+..+     +
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-----~  194 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-----S  194 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-----C
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-----c
Confidence            99999999999888889999999999999999 56 44 46667889999999999999 88865 34444443     4


Q ss_pred             -CccEEECcCC--CCC-cCCCccccCCCCCCEEEccCCc-CcccccccccCCCCCCEEECcCCc-CcccChhhhcCCCCC
Q 038320          345 -SLESLDLGQN--NLG-GFLPNSLGQLENLKILQLWGNL-FRGSIPESIGNLSSLRELYLHNNL-MDGTIPKSLGKLSHL  418 (467)
Q Consensus       345 -~L~~L~L~~n--~i~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L  418 (467)
                       +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence             8999999999  566 4567777889999999999999 777888889999999999999994 444444578899999


Q ss_pred             CEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320          419 VVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR  456 (467)
Q Consensus       419 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~  456 (467)
                      +.|++++| ++..... .+.  ..++.|++++|+++..
T Consensus       275 ~~L~l~~~-i~~~~~~-~l~--~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          275 KTLQVFGI-VPDGTLQ-LLK--EALPHLQINCSHFTTI  308 (336)
T ss_dssp             CEEECTTS-SCTTCHH-HHH--HHSTTSEESCCCSCCT
T ss_pred             CEEeccCc-cCHHHHH-HHH--hhCcceEEecccCccc
Confidence            99999999 4433222 221  2366677899977643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3.8e-22  Score=182.97  Aligned_cols=189  Identities=23%  Similarity=0.299  Sum_probs=120.5

Q ss_pred             CCCCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCC
Q 038320           64 DCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLR  143 (467)
Q Consensus        64 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  143 (467)
                      +||.|.|+.|..   ..+.+++++             +.++ .+|..+.  +++++|++++|.+++. .+..+.++++|+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~-------------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~   62 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQG-------------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLT   62 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTT-------------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred             cCCCCCceEcCC---CCeEEecCC-------------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCC
Confidence            688999999953   234567776             4444 3444443  5788899998888875 666788888899


Q ss_pred             EEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEE
Q 038320          144 YLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL  223 (467)
Q Consensus       144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L  223 (467)
                      +|++++|.+.+..+..+.++++|++|++++|.++.++...   +..+++|++|++++|.++..                 
T Consensus        63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~-----------------  122 (251)
T 3m19_A           63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV---FDHLTQLDKLYLGGNQLKSL-----------------  122 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             EEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH---hcccCCCCEEEcCCCcCCCc-----------------
Confidence            9999888888777777888888888888888877666543   44555555555555555544                 


Q ss_pred             ECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320          224 HLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL  302 (467)
Q Consensus       224 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  302 (467)
                                ++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       123 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          123 ----------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ----------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence                      333344445555555555555444343455555555555555555544444555555555566555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=8.7e-22  Score=186.09  Aligned_cols=195  Identities=22%  Similarity=0.331  Sum_probs=138.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      ...+++|++|++++|.+..  ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.++.++     .+..+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l  106 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-----AIAGL  106 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-----GGTTC
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-----hhcCC
Confidence            3467788889998888873  44 57778889999999888874 444 888888888888888877653     27778


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      ++|++|++++|.+++..     .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.
T Consensus       107 ~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  177 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT  177 (308)
T ss_dssp             TTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence            88888888888877643     36677777777777777776544  6677777777777777764332  666777777


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG  329 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  329 (467)
                      |++++|.+++..+  +..+++|++|++++|.+ .+. + .+..+++|+.|++++|.+++
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l-~~~-~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQI-SDV-S-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCC-CBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCcc-Ccc-c-cccCCCCCCEEEccCCeeec
Confidence            7777777764332  56677777777777776 322 2 25666667777776666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3e-21  Score=176.95  Aligned_cols=180  Identities=26%  Similarity=0.314  Sum_probs=114.8

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCC
Q 038320          219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS  298 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  298 (467)
                      ..++++++++.+...+. .+.  ++++.|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45667777776665443 222  467777777777776666666777777777777777776666666677777777777


Q ss_pred             CCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCC
Q 038320          299 ENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN  378 (467)
Q Consensus       299 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  378 (467)
                      +|.+ .+..+..+..+++|++|++++|.+++..+..+..+.     +|++|++++|++++..+..+..+++|++|++++|
T Consensus        92 ~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-----KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcc-cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-----cccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            7776 444445566666677777776666655444444443     6666666666666555555666666666666666


Q ss_pred             cCcccccccccCCCCCCEEECcCCcCccc
Q 038320          379 LFRGSIPESIGNLSSLRELYLHNNLMDGT  407 (467)
Q Consensus       379 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  407 (467)
                      .+++..+..+..+++|+.|++++|++.+.
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66655555566666666666666666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.8e-21  Score=182.65  Aligned_cols=193  Identities=22%  Similarity=0.322  Sum_probs=102.3

Q ss_pred             CCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320          188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK  267 (467)
Q Consensus       188 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  267 (467)
                      ..+++|++|++++|.+....     .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. + .+..+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~  108 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQS  108 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTT
T ss_pred             HHcCCcCEEEeeCCCccCch-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCC
Confidence            34566777777766665532     34456666666666666655443  55566666666666665532 2 3555566


Q ss_pred             CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320          268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE  347 (467)
Q Consensus       268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~  347 (467)
                      |+.|++++|.+++. + .+..+++|++|++++|.+ .+. +. +..+++|+.|++++|.+++..+  +..++     +|+
T Consensus       109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l-~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----~L~  176 (308)
T 1h6u_A          109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQI-TNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLS-----KLT  176 (308)
T ss_dssp             CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCC-CCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCC
T ss_pred             CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCcc-CcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCC-----CCC
Confidence            66666666655532 2 255555666666666555 222 21 4555555555555555554322  22222     555


Q ss_pred             EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320          348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      .|++++|.+++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|+++
T Consensus       177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            55555555553322  445555555555555555332  1445555555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.7e-21  Score=177.23  Aligned_cols=196  Identities=21%  Similarity=0.234  Sum_probs=149.4

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc-CCCCCCccCCCCCcCCeeeccC-ccCCCCCCCChhhcCCCCCC
Q 038320          116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS-FAGNIPPSFGNLSSLQILDLNT-FYYSSLESDDVEWLSRLSSL  193 (467)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~l~~~~~~~l~~l~~L  193 (467)
                      +|++|++++|++++. .+..+.++++|++|++++|. +++..+..|.++++|++|++++ |.++.++...   +.++++|
T Consensus        32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---f~~l~~L  107 (239)
T 2xwt_C           32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---LKELPLL  107 (239)
T ss_dssp             TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---EECCTTC
T ss_pred             cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---hCCCCCC
Confidence            789999999998854 45578889999999999997 7755556788999999999998 8888777554   6778889


Q ss_pred             CEEECCCcCCCCCCCchhhhcCCCCCCC---EEECCCC-cCcccCCccccCCCCCc-EEEccCCcCCCCcchhccCCCCC
Q 038320          194 QYLNLEGVDLSKAGSSWVQATNMLPSLS---ELHLPAC-GLFEFPPLSVVNFSSLL-FLDLSSNDFNSSIPQWLLNISKL  268 (467)
Q Consensus       194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L  268 (467)
                      ++|++++|.+++..     .+..+++|+   +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|......++|
T Consensus       108 ~~L~l~~n~l~~lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L  181 (239)
T 2xwt_C          108 KFLGIFNTGLKMFP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL  181 (239)
T ss_dssp             CEEEEEEECCCSCC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred             CEEeCCCCCCcccc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence            99999998887743     256666666   8888888 88877777788888888 8888888887 555544344778


Q ss_pred             CEEeccCCc-cccccchhhhCC-CCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCC
Q 038320          269 AHLDLSANN-LQGNIPDAFANM-TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN  325 (467)
Q Consensus       269 ~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  325 (467)
                      +.|++++|+ +++..+..+..+ ++|+.|++++|.+ + .+|..  .+++|+.|+++++
T Consensus       182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-T-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-C-CCCCT--TCTTCSEEECTTC
T ss_pred             CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-c-cCChh--HhccCceeeccCc
Confidence            888888884 775556667777 7888888888877 3 34433  5667777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.2e-21  Score=178.20  Aligned_cols=199  Identities=23%  Similarity=0.268  Sum_probs=108.7

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCcchhccCCCCCCEEeccC-CccccccchhhhCCCCCCEEe
Q 038320          219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND-FNSSIPQWLLNISKLAHLDLSA-NNLQGNIPDAFANMTSLRELD  296 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~  296 (467)
                      +|++|++++|++++..+..+..+++|++|++++|. +++..+..+.++++|+.|++++ |.+++..+..+.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44555555555555444445555555555555554 4433333445555555555554 555444344444555555555


Q ss_pred             CCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC-CCCcCCCccccCCCCCC-EEE
Q 038320          297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN-NLGGFLPNSLGQLENLK-ILQ  374 (467)
Q Consensus       297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~i~~~~~~~l~~l~~L~-~L~  374 (467)
                      +++|.+ .+ +|. +..+++|+                          .|++|++++| .+++..+..+..+++|+ +|+
T Consensus       112 l~~n~l-~~-lp~-~~~l~~L~--------------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C          112 IFNTGL-KM-FPD-LTKVYSTD--------------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEECC-CS-CCC-CTTCCBCC--------------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             CCCCCC-cc-ccc-cccccccc--------------------------cccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            555554 21 332 33333333                          1125666666 55555555566667777 777


Q ss_pred             ccCCcCcccccccccCCCCCCEEECcCCc-CcccChhhhcCC-CCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          375 LWGNLFRGSIPESIGNLSSLRELYLHNNL-MDGTIPKSLGKL-SHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       375 l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      +++|.++ .+|......++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|..   .+++|+.|+++++
T Consensus       163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred             cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence            7777766 444433233677777777774 665555666667 777777777777664 3331   4567777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=4e-20  Score=164.36  Aligned_cols=164  Identities=23%  Similarity=0.280  Sum_probs=121.3

Q ss_pred             CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC
Q 038320          114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL  193 (467)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L  193 (467)
                      .++|++|++++|++++. .+..+.++++|++|++++|++.+..+..+.++++|++|++++|.++.++...   +..+++|
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV---FDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTC
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH---hcCccCC
Confidence            35889999999998864 5566788999999999999998665666788999999999999888776653   5677788


Q ss_pred             CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320          194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL  273 (467)
Q Consensus       194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  273 (467)
                      ++|++++|.+++..+   ..+..+++|++|++++|.+++.++..+..+++|++|++++|.+.+       .+++|+.|++
T Consensus       103 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~  172 (208)
T 2o6s_A          103 KELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE  172 (208)
T ss_dssp             CEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred             CEEEcCCCcCcccCH---hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence            888888887776543   245667777777777777777666666777777777777776543       3456677777


Q ss_pred             cCCccccccchhhhCCCC
Q 038320          274 SANNLQGNIPDAFANMTS  291 (467)
Q Consensus       274 ~~n~l~~~~~~~l~~l~~  291 (467)
                      +.|.++|.+|..++.++.
T Consensus       173 ~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          173 WINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHCTTTBBCTTSSBCT
T ss_pred             HHHhCCceeeccCccccC
Confidence            777777777766655443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4e-20  Score=187.49  Aligned_cols=200  Identities=22%  Similarity=0.307  Sum_probs=132.4

Q ss_pred             CcccE-EecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEE
Q 038320           67 KWEGV-ICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYL  145 (467)
Q Consensus        67 ~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  145 (467)
                      .|.++ .|..  ++++.+++++             +.+++ +|..+  +++|++|+|++|.++  .+|   ..+++|++|
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~-------------n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L  105 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNR-------------LNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCS-------------SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEE
T ss_pred             hhhhcccccc--CCccEEEeCC-------------CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEE
Confidence            68888 6753  4688888887             67766 66655  378888888888887  366   457888888


Q ss_pred             EcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEEC
Q 038320          146 NLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL  225 (467)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l  225 (467)
                      ++++|.+++ +|. +.+  +|++|++++|.++.+|.       .+++|+.|++++|.+++...       .+++|++|++
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~L  167 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTMLPE-------LPTSLEVLSV  167 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-------CCTTCCEEEC
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCcCCC-------cCCCcCEEEC
Confidence            888888885 666 554  78888888887776554       35666666666666654321       2445555555


Q ss_pred             CCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhC-----CCCCCEEeCCCC
Q 038320          226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN-----MTSLRELDLSEN  300 (467)
Q Consensus       226 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~L~~n  300 (467)
                      ++|.+++                         +|. +.  ++|+.|++++|.++ .+|. +..     .+.|+.|++++|
T Consensus       168 s~N~L~~-------------------------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          168 RNNQLTF-------------------------LPE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCREN  217 (571)
T ss_dssp             CSSCCSC-------------------------CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSS
T ss_pred             CCCCCCC-------------------------cch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCC
Confidence            5555444                         333 22  44555555555544 3333 222     223388888888


Q ss_pred             CCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      .+  ..+|..+..+++|+.|++++|.+++..|..+..+.
T Consensus       218 ~l--~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          218 RI--THIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC--CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             cc--eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            87  35777777788888888888888888888877765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=9.1e-20  Score=175.53  Aligned_cols=239  Identities=17%  Similarity=0.127  Sum_probs=159.6

Q ss_pred             eeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccC-CccccCCCCCcE
Q 038320          168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP-PLSVVNFSSLLF  246 (467)
Q Consensus       168 ~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~  246 (467)
                      +++.+++.++.+|..    +  .+++++|+|++|.++....   ..+.++++|++|++++|++.+.+ +..|.+++++++
T Consensus        13 ~v~C~~~~Lt~iP~~----l--~~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           13 VFLCQESKVTEIPSD----L--PRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             EEEEESTTCCSCCTT----C--CTTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             EEEecCCCCCccCcC----c--CCCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            444444445544443    1  1345555555555554331   25677888888888888876544 456788888765


Q ss_pred             -EEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCC-CCCCCCCcccccCC-CCCCEEecc
Q 038320          247 -LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN-SLIGGQIPKDLGSL-CNLWDLDLS  323 (467)
Q Consensus       247 -L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~l-~~L~~L~l~  323 (467)
                       +.++.|+++...|..+.++++|+.|++++|.+....+..+....++..+++.++ .+ ....+..+..+ ..++.|+++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i-~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI-HTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC-CEECTTSSTTSBSSCEEEECC
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc-ccccccchhhcchhhhhhccc
Confidence             556678888766778888999999999999988666666666777888888654 44 33333345555 368888999


Q ss_pred             CCcCCCchhhHHHhhhcccCCCccEEECcC-CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320          324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQ-NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN  402 (467)
Q Consensus       324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n  402 (467)
                      +|.++...+..+. ..     +|+++++.+ |.++...+..|..+++|++|++++|.++ .+|..  .+.+|+.|.+.++
T Consensus       163 ~N~i~~i~~~~f~-~~-----~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          163 KNGIQEIHNSAFN-GT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             SSCCCEECTTSST-TE-----EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred             cccccCCChhhcc-cc-----chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccC
Confidence            9888754433332 22     688888875 5566554556788888999999999888 44542  3556777777665


Q ss_pred             cCcccChhhhcCCCCCCEEeCcCC
Q 038320          403 LMDGTIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       403 ~l~~~~p~~l~~l~~L~~L~l~~n  426 (467)
                      .-...+| .+..+++|+.+++.++
T Consensus       234 ~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCcCcCC-CchhCcChhhCcCCCC
Confidence            5444666 4778888888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.7e-19  Score=160.25  Aligned_cols=65  Identities=25%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCC
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLS  416 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~  416 (467)
                      +|++|++++|.+++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|+++|.+|..++.++
T Consensus       125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            44444444444443333334445555555555554432       234455555555555555555444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.8e-19  Score=172.08  Aligned_cols=245  Identities=19%  Similarity=0.164  Sum_probs=142.3

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCC-CCCCChhhcCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS-LESDDVEWLSR  189 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-l~~~~~~~l~~  189 (467)
                      ++.|.. ++++.++++++  .+|..+  .+++++|+|++|+++...+..|.++++|++|++++|.+.+ ++...   +.+
T Consensus         6 ~C~C~~-~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~   77 (350)
T 4ay9_X            6 ICHCSN-RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSN   77 (350)
T ss_dssp             SSEEET-TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCS
T ss_pred             ccEeeC-CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhc
Confidence            444433 56777888877  467655  3578888888888884444568888888888888888643 44433   566


Q ss_pred             CCCCCE-EECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCC-cCCCCcchhccCC-C
Q 038320          190 LSSLQY-LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSN-DFNSSIPQWLLNI-S  266 (467)
Q Consensus       190 l~~L~~-L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l-~  266 (467)
                      ++++++ +.+++|.++...+   ..+..+++|++|++++|++....+..+....++..+++.++ .+....+..+..+ .
T Consensus        78 L~~l~~~l~~~~N~l~~l~~---~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~  154 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINP---EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  154 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECT---TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             chhhhhhhcccCCcccccCc---hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence            666654 4455566665542   25566777777777777776666655556666666666553 3332222334443 2


Q ss_pred             CCCEEeccCCccccccchhhhCCCCCCEEeCCC-CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCC
Q 038320          267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSE-NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS  345 (467)
Q Consensus       267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~  345 (467)
                      .++.|++++|.++. ++.......+|+.+++.+ |.+ +...+..|..+++|+.|++++|+++...+..+        .+
T Consensus       155 ~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l-~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--------~~  224 (350)
T 4ay9_X          155 ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLPSYGL--------EN  224 (350)
T ss_dssp             SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTC-CCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--------TT
T ss_pred             hhhhhccccccccC-CChhhccccchhHHhhccCCcc-cCCCHHHhccCcccchhhcCCCCcCccChhhh--------cc
Confidence            46666777776663 333333445666666654 333 22222345666666666666666654322211        24


Q ss_pred             ccEEECcCCCCCcCCCccccCCCCCCEEEccC
Q 038320          346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWG  377 (467)
Q Consensus       346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  377 (467)
                      |+.|.+.++.--..+| .+..+++|+.+++.+
T Consensus       225 L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             chHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            5555554443222333 245555666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=5.8e-19  Score=179.03  Aligned_cols=186  Identities=27%  Similarity=0.378  Sum_probs=106.3

Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL  271 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  271 (467)
                      +|+.|++++|.+++...    .+  .++|++|++++|.++..+    ..+++|++|++++|.+++ +|. +.+  +|+.|
T Consensus        60 ~L~~L~Ls~n~L~~lp~----~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD----NL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSCCCS----CC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred             CccEEEeCCCCCCccCH----hH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence            67777777777766432    12  256777777777776433    345667777777777665 555 433  66777


Q ss_pred             eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEEC
Q 038320          272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL  351 (467)
Q Consensus       272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L  351 (467)
                      ++++|.+++ +|.   .+++|+.|++++|.+ ++ +|.   .+++|+.|++++|.+++ +|. +.       ++|+.|++
T Consensus       126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------~~L~~L~L  187 (571)
T 3cvr_A          126 DVDNNQLTM-LPE---LPALLEYINADNNQL-TM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------ESLEALDV  187 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCC-SC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------TTCCEEEC
T ss_pred             ECCCCcCCC-CCC---cCccccEEeCCCCcc-Cc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------CCCCEEEC
Confidence            777776664 444   456666666666666 32 443   34566666666666655 222 22       25666666


Q ss_pred             cCCCCCcCCCccccCCCCC-------CEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320          352 GQNNLGGFLPNSLGQLENL-------KILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK  414 (467)
Q Consensus       352 ~~n~i~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~  414 (467)
                      ++|+|+ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus       188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            666665 3333 332  44       55555555555 35555555555555555555555555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=2e-18  Score=155.69  Aligned_cols=162  Identities=23%  Similarity=0.256  Sum_probs=107.9

Q ss_pred             CCCCCCCCCCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccC
Q 038320           58 SSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLG  137 (467)
Q Consensus        58 ~~w~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~  137 (467)
                      ..|.+...|.|.+|.|...                         .+ +.+|..+  .++|++|+|++|.+++. .|..+.
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~-------------------------~l-~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~   61 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSK-------------------------RH-ASVPAGI--PTNAQILYLHDNQITKL-EPGVFD   61 (229)
T ss_dssp             CCCCTTCEEETTEEECTTS-------------------------CC-SSCCSCC--CTTCSEEECCSSCCCCC-CTTTTT
T ss_pred             ccCCCCCEEeCCEeEccCC-------------------------Cc-CccCCCC--CCCCCEEEcCCCccCcc-CHHHhh
Confidence            3456778899999999642                         11 1233322  27899999999999876 678888


Q ss_pred             CCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCC
Q 038320          138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML  217 (467)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l  217 (467)
                      ++++|++|++++|.+....+..+.++++|++|++++|.++.++...   +..+++|++|++++|.++...    ..+..+
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~---~~~l~~L~~L~Ls~N~l~~lp----~~~~~l  134 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV---FDRLVHLKELFMCCNKLTELP----RGIERL  134 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCSCC----TTGGGC
T ss_pred             CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH---hCcchhhCeEeccCCcccccC----cccccC
Confidence            8999999999999987555566788888888888888888776553   456666666666666665332    233445


Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCC
Q 038320          218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN  255 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  255 (467)
                      ++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus       135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55555555555555544444445555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=5.8e-19  Score=180.94  Aligned_cols=171  Identities=25%  Similarity=0.317  Sum_probs=127.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      +..+++|++|++++|.+..  ++ .+..+++|++|+|++|.+.+.. . +..+++|++|++++|.+..++.     +..+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~l~~-----l~~l  108 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LTNLKNLGWLFLDENKIKDLSS-----LKDL  108 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCTT-----STTC
T ss_pred             hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCCh-h-hccCCCCCEEECcCCCCCCChh-----hccC
Confidence            4577888888888888873  33 4777888888888888887543 3 7888888888888888876542     7778


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      ++|+.|+|++|.+....     .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+.
T Consensus       109 ~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             TTCCEEECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCCEEEecCCCCCCCc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            88888888888877642     466777888888888877765  456777777788887777776555  677777777


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSL  302 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  302 (467)
                      |+|++|.+++.  ..+..+++|+.|+|++|.+
T Consensus       180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          180 LYLSKNHISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             EECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence            77777777653  3467777777777777776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2e-18  Score=161.59  Aligned_cols=173  Identities=24%  Similarity=0.351  Sum_probs=123.2

Q ss_pred             cCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCC
Q 038320          214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR  293 (467)
Q Consensus       214 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  293 (467)
                      ...+++|+.|++++|.+....  .+..+++|++|++++|.+++..+  +.++++|+.|++++|.+++ ++ .+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            345677888888888877653  46778888888888888875443  7778888888888888774 23 377788888


Q ss_pred             EEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEE
Q 038320          294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL  373 (467)
Q Consensus       294 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  373 (467)
                      +|++++|.+ .+ + ..+..+++|+.|++++|.+++.  ..+..++     +|+.|++++|.+++..+  +..+++|++|
T Consensus       116 ~L~L~~n~i-~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          116 SLSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             EEECTTSCC-CC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             EEECCCCcC-CC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCC-----CCCEEEccCCccccchh--hcCCCccCEE
Confidence            888888877 33 2 4567777888888888877764  3334433     77778887777776543  6777777777


Q ss_pred             EccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320          374 QLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG  406 (467)
Q Consensus       374 ~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~  406 (467)
                      ++++|.+++ ++ .+..+++|+.|++++|++++
T Consensus       184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          184 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            777777764 33 36777777777777777764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=9.9e-19  Score=163.63  Aligned_cols=172  Identities=27%  Similarity=0.348  Sum_probs=94.1

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320          112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS  191 (467)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~  191 (467)
                      ..+++|++|++++|.+..  ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.++.     +..++
T Consensus        43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~  112 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSS-----LKDLK  112 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGG-----GTTCT
T ss_pred             hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChh-----hccCC
Confidence            456667777777776653  33 35666777777777777664 333 6666667777766666654321     45555


Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL  271 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  271 (467)
                      +|++|++++|.+++.                             ..+..+++|++|++++|.+++.  ..+..+++|+.|
T Consensus       113 ~L~~L~L~~n~i~~~-----------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A          113 KLKSLSLEHNGISDI-----------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             TCCEEECTTSCCCCC-----------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCEEECCCCcCCCC-----------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence            555555555555443                             1233444445555555544432  334455555555


Q ss_pred             eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC
Q 038320          272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG  329 (467)
Q Consensus       272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  329 (467)
                      ++++|.+++..+  +..+++|++|++++|.+ + .++ .+..+++|+.|++++|.++.
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i-~-~l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHI-S-DLR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCC-C-BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcC-C-CCh-hhccCCCCCEEECcCCcccC
Confidence            555555553332  55555555555555555 2 222 25555666666666655543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.6e-18  Score=155.22  Aligned_cols=156  Identities=24%  Similarity=0.255  Sum_probs=102.1

Q ss_pred             CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCc-ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320          269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE  347 (467)
Q Consensus       269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~  347 (467)
                      +.+++++|.++ .+|..+  .+.++.|++++|.+ .+..+ ..+..+++|+.|++++|.+++..+..+..+.     +|+
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-----~L~   84 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-----GVN   84 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-----TCC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-----CCC
Confidence            46777777776 345433  23466777777777 33322 3466677777777777777665555555544     677


Q ss_pred             EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCC
Q 038320          348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP  427 (467)
Q Consensus       348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  427 (467)
                      +|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|+
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            77777777766666666677777777777777776666666677777777777777766666667677777777777777


Q ss_pred             CcccCC
Q 038320          428 WIGLVT  433 (467)
Q Consensus       428 ~~~~~~  433 (467)
                      +....+
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            665443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.1e-18  Score=178.87  Aligned_cols=191  Identities=23%  Similarity=0.292  Sum_probs=117.2

Q ss_pred             CCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCC
Q 038320          140 EKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS  219 (467)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~  219 (467)
                      .++..+++..+.+.+.++  +..+++|+.|++++|.+..++.     +..+++|+.|+|++|.+.+..     .+..+++
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~-----l~~l~~L~~L~Ls~N~l~~~~-----~l~~l~~   88 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGNKLTDIK-----PLTNLKN   88 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT-----GGGCTTCCEEECTTSCCCCCG-----GGGGCTT
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH-----HccCCCCCEEEeeCCCCCCCh-----hhccCCC
Confidence            345555666666653332  4567788888888888776642     667777777777777776654     2556777


Q ss_pred             CCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320          220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE  299 (467)
Q Consensus       220 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  299 (467)
                      |+.|++++|.+.+..  .+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++
T Consensus        89 L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           89 LGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            777777777766532  46666667777777766654 2 3355666666666666666643  4456666666666666


Q ss_pred             CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCc
Q 038320          300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG  358 (467)
Q Consensus       300 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~  358 (467)
                      |.+ .+..+  +..+++|+.|++++|.+++.  ..+..+     ++|+.|+|++|.+++
T Consensus       163 N~l-~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l-----~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          163 NQI-SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGL-----KNLDVLELFSQECLN  211 (605)
T ss_dssp             SCC-CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTC-----TTCSEEECCSEEEEC
T ss_pred             CcC-CCchh--hccCCCCCEEECcCCCCCCC--hHHccC-----CCCCEEEccCCcCcC
Confidence            666 33333  55666666666666666542  122222     256666666665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.8e-18  Score=152.77  Aligned_cols=153  Identities=22%  Similarity=0.299  Sum_probs=91.8

Q ss_pred             CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320          269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES  348 (467)
Q Consensus       269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~  348 (467)
                      +.++.+++.++ .+|..+.  ++++.|++++|.+ .+..+..+..+++|+.|++++|.+++..+..+..+.     +|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-----SLNS   84 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-----SCCE
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-----CCCE
Confidence            45666666665 3444332  4667777777766 444444566666666666666666655555555444     6666


Q ss_pred             EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320          349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~  428 (467)
                      |++++|.++...+..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            66666666654444556666666666666666655555566666666666666666655555566666666666666665


Q ss_pred             cc
Q 038320          429 IG  430 (467)
Q Consensus       429 ~~  430 (467)
                      ..
T Consensus       165 ~c  166 (220)
T 2v9t_B          165 IC  166 (220)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6e-18  Score=151.48  Aligned_cols=156  Identities=22%  Similarity=0.296  Sum_probs=134.2

Q ss_pred             cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc-hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320          245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS  323 (467)
Q Consensus       245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  323 (467)
                      +.+++++|.++ .+|..+.  ..++.|++++|.+++..+ ..+..+++|++|++++|.+ ++..+..+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECC
Confidence            58999999887 4676553  457899999999987754 4578999999999999998 66666688999999999999


Q ss_pred             CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320          324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL  403 (467)
Q Consensus       324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~  403 (467)
                      +|.+++..+..+..+.     +|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus        90 ~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           90 SNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            9999988887777665     89999999999998888999999999999999999998888899999999999999999


Q ss_pred             CcccCh
Q 038320          404 MDGTIP  409 (467)
Q Consensus       404 l~~~~p  409 (467)
                      +.+..+
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            876533

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.6e-17  Score=149.81  Aligned_cols=156  Identities=28%  Similarity=0.358  Sum_probs=115.6

Q ss_pred             CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320          268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE  347 (467)
Q Consensus       268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~  347 (467)
                      -+.++.+++.++ .+|..+  .++|++|++++|.+ .+..+..+..+++|+.|++++|.++...+..+..++     +|+
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-----~L~   91 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-----QLT   91 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCcc-CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-----CcC
Confidence            456777777776 455433  37788888888888 666677778888888888888888765555555554     788


Q ss_pred             EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCC
Q 038320          348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP  427 (467)
Q Consensus       348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  427 (467)
                      +|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            8888888887666666777888888888888877 667777778888888888888876655667778888888888888


Q ss_pred             CcccCC
Q 038320          428 WIGLVT  433 (467)
Q Consensus       428 ~~~~~~  433 (467)
                      +....+
T Consensus       171 ~~c~c~  176 (229)
T 3e6j_A          171 WDCECR  176 (229)
T ss_dssp             BCTTBG
T ss_pred             ccCCcc
Confidence            776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=8.5e-18  Score=150.50  Aligned_cols=153  Identities=24%  Similarity=0.347  Sum_probs=133.0

Q ss_pred             cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320          245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG  324 (467)
Q Consensus       245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  324 (467)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|+.|++++|++ .+..+..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCC
Confidence            57888888887 5666553  6899999999999977777899999999999999998 666788899999999999999


Q ss_pred             CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      |.++...+..+..+.     +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus        90 N~l~~l~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLF-----SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCC-----CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999976666666555     899999999999988888999999999999999999977777788999999999999988


Q ss_pred             cc
Q 038320          405 DG  406 (467)
Q Consensus       405 ~~  406 (467)
                      ..
T Consensus       165 ~c  166 (220)
T 2v9t_B          165 IC  166 (220)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=3.7e-18  Score=150.22  Aligned_cols=153  Identities=20%  Similarity=0.201  Sum_probs=103.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCC
Q 038320          288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQL  367 (467)
Q Consensus       288 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l  367 (467)
                      .+++|+.|++++|.+ . .++ .+..+++|++|++++|.++.  +..+..++     +|++|++++|.+++..+..+..+
T Consensus        42 ~l~~L~~L~l~~n~i-~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~-----~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           42 QMNSLTYITLANINV-T-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLS-----NLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HHHTCCEEEEESSCC-S-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCT-----TCCEEEEECTTCBGGGSCCCTTC
T ss_pred             hcCCccEEeccCCCc-c-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCC-----CCCEEEeECCccCcccChhhcCC
Confidence            445556666666655 2 333 45556666666666664433  22333333     67777777777776667777888


Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEe
Q 038320          368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH  447 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~  447 (467)
                      ++|++|++++|.+++..+..+..+++|++|++++|...+.+| .+..+++|++|++++|++++..   .+..+++|+.|+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~  187 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLY  187 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEE
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEE
Confidence            888888888888887777778888888888888887333555 5778888888888888877632   466788888888


Q ss_pred             ccCCCCC
Q 038320          448 IAKYSLA  454 (467)
Q Consensus       448 l~~n~i~  454 (467)
                      +++|+|.
T Consensus       188 l~~N~i~  194 (197)
T 4ezg_A          188 AFSQTIG  194 (197)
T ss_dssp             ECBC---
T ss_pred             eeCcccC
Confidence            8888664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=5.9e-18  Score=163.49  Aligned_cols=176  Identities=28%  Similarity=0.303  Sum_probs=90.7

Q ss_pred             CEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhcc-CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320          221 SELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE  299 (467)
Q Consensus       221 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  299 (467)
                      +.++++++.+...+. .+  .+.++.|++++|.+++..+..+. ++++|+.|++++|.+++..+..+.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666655432 21  23456666666666554444454 566666666666666655555566666666666666


Q ss_pred             CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc---cCCCCCCEEEcc
Q 038320          300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL---GQLENLKILQLW  376 (467)
Q Consensus       300 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l---~~l~~L~~L~l~  376 (467)
                      |++ ....+..+..+++|+.|++++|.+++..+..+..+.     +|+.|+|++|++++..+..+   ..+++|+.|+++
T Consensus        98 N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           98 NHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             SCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             CcC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            665 333334455555555555555555544444444433     55555555555554332223   334555555555


Q ss_pred             CCcCcccccccccCCCC--CCEEECcCCcCc
Q 038320          377 GNLFRGSIPESIGNLSS--LRELYLHNNLMD  405 (467)
Q Consensus       377 ~n~l~~~~~~~l~~~~~--L~~L~Ls~n~l~  405 (467)
                      +|.+++..+..+..++.  ++.|+|++|.+.
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            55555333333444443  244555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=6e-18  Score=163.44  Aligned_cols=177  Identities=30%  Similarity=0.215  Sum_probs=127.7

Q ss_pred             cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhh-CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320          245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA-NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS  323 (467)
Q Consensus       245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  323 (467)
                      +.++++++.++ .+|..+.  +.++.|++++|.+++..+..+. ++++|++|++++|.+ .+..+..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECC
Confidence            57888888886 4665443  4588888888888877676676 788888888888888 55555677888888888888


Q ss_pred             CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc---cCCCCCCEEECc
Q 038320          324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI---GNLSSLRELYLH  400 (467)
Q Consensus       324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~~~~L~~L~Ls  400 (467)
                      +|.+++..+..+..+.     +|++|+|++|++++..+..|..+++|++|++++|.+++..+..+   ..+++|+.|+|+
T Consensus        97 ~N~l~~~~~~~~~~l~-----~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             SSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             CCcCCcCCHHHhCCCc-----CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            8888766555555554     77888888888777667777777788888888887774333333   457777777777


Q ss_pred             CCcCcccChhhhcCCCC--CCEEeCcCCCCcc
Q 038320          401 NNLMDGTIPKSLGKLSH--LVVLDISGNPWIG  430 (467)
Q Consensus       401 ~n~l~~~~p~~l~~l~~--L~~L~l~~n~~~~  430 (467)
                      +|++++..+..+..++.  ++.|++++|++..
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            77777555566666665  3777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.2e-17  Score=146.86  Aligned_cols=154  Identities=16%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCC
Q 038320          137 GSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM  216 (467)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~  216 (467)
                      +.+++|++|++++|.+. .+| .+..+++|++|++++|.+..++                                .+..
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--------------------------------~l~~   86 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN--------------------------------PISG   86 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG--------------------------------GGTT
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch--------------------------------hhhc
Confidence            44566666666666665 444 3555556666666555433221                                3334


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEe
Q 038320          217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELD  296 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  296 (467)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|...+.++ .+..+++|++|+
T Consensus        87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~  165 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN  165 (197)
T ss_dssp             CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred             CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence            4445555555555544444445555555555555555555455555555566666666555222333 355556666666


Q ss_pred             CCCCCCCCCCCcccccCCCCCCEEeccCCcCC
Q 038320          297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD  328 (467)
Q Consensus       297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  328 (467)
                      +++|.+ .+ ++ .+..+++|+.|++++|.+.
T Consensus       166 l~~n~i-~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          166 IQFDGV-HD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CTTBCC-CC-CT-TGGGCSSCCEEEECBC---
T ss_pred             CCCCCC-cC-hH-HhccCCCCCEEEeeCcccC
Confidence            666655 22 22 4455555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2.4e-18  Score=180.67  Aligned_cols=113  Identities=28%  Similarity=0.403  Sum_probs=61.1

Q ss_pred             CCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEe
Q 038320          242 SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD  321 (467)
Q Consensus       242 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  321 (467)
                      ++|++|+|++|.++ .+|..+.++++|+.|+|++|.++ .+|..++.+++|++|+|++|.+  +.+|..++.+++|+.|+
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCCEE
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccEEe
Confidence            34444444444444 44444455555555555555555 4455555566666666666655  24555566666666666


Q ss_pred             ccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCc
Q 038320          322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPN  362 (467)
Q Consensus       322 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~  362 (467)
                      |++|.+++.+|..+.....    .+..+++++|.+++.+|.
T Consensus       323 L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          323 VEGNPLEKQFLKILTEKSV----TGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCCCCCCCC
T ss_pred             CCCCccCCCChHHHhhcch----hhhHHhhccCcccCcCcc
Confidence            6666666666665544321    122355666666655543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.4e-17  Score=151.73  Aligned_cols=171  Identities=25%  Similarity=0.335  Sum_probs=139.5

Q ss_pred             CCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCE
Q 038320          240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWD  319 (467)
Q Consensus       240 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  319 (467)
                      .+.++..++++++.+++ ++ .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+ ++ ++. +..+++|+.
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i-~~-~~~-l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQI-SD-LSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCcc-CC-Chh-hccCCCCCE
Confidence            45667778888888874 33 46788999999999999884 44 688899999999999998 44 343 889999999


Q ss_pred             EeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEEC
Q 038320          320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL  399 (467)
Q Consensus       320 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L  399 (467)
                      |++++|.+++..+..  .      ++|+.|++++|++++.  ..+..+++|++|++++|.+++. + .+..+++|+.|++
T Consensus        90 L~L~~N~l~~l~~~~--~------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           90 LSVNRNRLKNLNGIP--S------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             EECCSSCCSCCTTCC--C------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred             EECCCCccCCcCccc--c------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence            999999988633211  1      3899999999999864  4688999999999999999854 4 6888999999999


Q ss_pred             cCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320          400 HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       400 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      ++|++++.  ..+..+++|+.|++++|++++.
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999866  6788899999999999998765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=5.7e-17  Score=149.27  Aligned_cols=148  Identities=21%  Similarity=0.302  Sum_probs=74.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      +..+++|++|++++|.++.  ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.++..     .. 
T Consensus        37 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~-----~~-  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGI-----PS-  105 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTC-----CC-
T ss_pred             hhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcc-----cc-
Confidence            4455556666666555552  33 44555556666666555553 222 55555555555555555544331     11 


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      ++|++|++++|.+                           ++.  ..+..+++|++|++++|.+++. + .+..+++|+.
T Consensus       106 ~~L~~L~L~~N~l---------------------------~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~  154 (263)
T 1xeu_A          106 ACLSRLFLDNNEL---------------------------RDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEV  154 (263)
T ss_dssp             SSCCEEECCSSCC---------------------------SBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCE
T ss_pred             CcccEEEccCCcc---------------------------CCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCE
Confidence            4455555555544                           442  1244455555555555554432 2 3444555555


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSL  302 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  302 (467)
                      |++++|.+++.  ..+..+++|+.|++++|.+
T Consensus       155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            55555555433  3345555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=8.5e-20  Score=185.99  Aligned_cols=123  Identities=27%  Similarity=0.363  Sum_probs=78.0

Q ss_pred             CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCC
Q 038320          316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR  395 (467)
Q Consensus       316 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~  395 (467)
                      .|+.|++++|.+++ +|. +..+.     +|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~-----~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLL-----LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGT-----TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             CceEEEecCCCCCC-CcC-ccccc-----cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence            35666666666654 232 44443     6666777766666 556666777777777777777764 55 566777777


Q ss_pred             EEECcCCcCcccC-hhhhcCCCCCCEEeCcCCCCcccCChh--hhCCCCCCCEEec
Q 038320          396 ELYLHNNLMDGTI-PKSLGKLSHLVVLDISGNPWIGLVTEV--HFSKLKNLKELHI  448 (467)
Q Consensus       396 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~l~l  448 (467)
                      .|+|++|++++.. |..+..+++|+.|++++|++++.++..  .+..+++|+.|++
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7777777776555 677777777777777777766654421  2334667776653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=5.6e-19  Score=179.96  Aligned_cols=184  Identities=20%  Similarity=0.198  Sum_probs=136.9

Q ss_pred             CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCC-------------CCCCCCcccccCCCCCCEEe-ccCCcCCC
Q 038320          264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS-------------LIGGQIPKDLGSLCNLWDLD-LSGNDLDG  329 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~~l~~l~~L~~L~-l~~n~l~~  329 (467)
                      .+++|+.|++++|.++ .+|..++++++|+.|++++|.             . .+..|..++.+++|+.|+ ++.|.+..
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~-~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDP-LLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT-GGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhccc-ccCCHHHHHHHHhcccCcchhhcccch
Confidence            3455555555555554 445555555555555554432             2 345566677777777777 55554332


Q ss_pred             chhh-----HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          330 EIIE-----FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       330 ~~~~-----~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      ....     .+..+   ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+
T Consensus       425 L~~l~l~~n~i~~l---~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          425 LRSKFLLENSVLKM---EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             HHHHHHHHHHHHHH---HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             hhhhhhhccccccc---CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence            1111     11221   12369999999999997 565 999999999999999999 8899999999999999999999


Q ss_pred             cccChhhhcCCCCCCEEeCcCCCCcccC-ChhhhCCCCCCCEEeccCCCCCCCcc
Q 038320          405 DGTIPKSLGKLSHLVVLDISGNPWIGLV-TEVHFSKLKNLKELHIAKYSLAPRLT  458 (467)
Q Consensus       405 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~  458 (467)
                      ++ +| .+..+++|++|++++|++++.. |. .+..+++|+.|+|++|+++..+.
T Consensus       499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCcc
Confidence            96 77 8999999999999999999887 77 79999999999999998875543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.8e-16  Score=135.59  Aligned_cols=135  Identities=25%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             CCCCEEeccCCcCC-CchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC
Q 038320          315 CNLWDLDLSGNDLD-GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS  393 (467)
Q Consensus       315 ~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  393 (467)
                      ++|+.|++++|.++ +.+|..+..++     +|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-----~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-----NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-----GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-----CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            34444444444443 23333333333     555666666655543  45666677777777777777656666666777


Q ss_pred             CCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCC--hhhhCCCCCCCEEeccCCCCCCC
Q 038320          394 LRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVT--EVHFSKLKNLKELHIAKYSLAPR  456 (467)
Q Consensus       394 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~l~l~~n~i~~~  456 (467)
                      |++|++++|.+++. .+..+..+++|+.|++++|++++..+  ...+..+++|+.|++++|++.+.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            77777777777643 22566777777777777777766555  12566777777777777766544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=9.9e-17  Score=152.90  Aligned_cols=219  Identities=15%  Similarity=0.116  Sum_probs=134.0

Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcc----ccccchhhhCCCCC
Q 038320          217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNL----QGNIPDAFANMTSL  292 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L  292 (467)
                      +++|+++++.. .+.......|.++++|+.+++..|.+....+..|.++.++..+....+..    .......+.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            44444444444 44444444455555555555555544433334444444444443333111    11112223344455


Q ss_pred             C-EEeCCCCCCCCCCCcccc----cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCC
Q 038320          293 R-ELDLSENSLIGGQIPKDL----GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQL  367 (467)
Q Consensus       293 ~-~L~L~~n~l~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l  367 (467)
                      + .+.+...    +.++..+    ....+++.+.+.++- .......+..    .+++|+.+++++|+++......|.++
T Consensus       179 ~~~i~~~~~----~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~----~~~~L~~l~L~~n~i~~I~~~aF~~~  249 (329)
T 3sb4_A          179 ETTIQVGAM----GKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRD----YMPNLVSLDISKTNATTIPDFTFAQK  249 (329)
T ss_dssp             EEEEEECTT----CCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHH----HCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred             ceeEEecCC----CcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHH----hcCCCeEEECCCCCcceecHhhhhCC
Confidence            4 3333322    1122211    123456666666542 2222222222    12489999999999997777889999


Q ss_pred             CCCCEEEccCCcCcccccccccCCCCCC-EEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEE
Q 038320          368 ENLKILQLWGNLFRGSIPESIGNLSSLR-ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL  446 (467)
Q Consensus       368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l  446 (467)
                      ++|+.|++.+| ++...+..|.+|++|+ .+++.+ .++...+..|.+|++|+.+++++|++....+. .|.++++|+.+
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~-aF~~~~~L~~l  326 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE-LFGNGVPSKLI  326 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT-TTCTTCCCCEE
T ss_pred             CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh-hhcCCcchhhh
Confidence            99999999998 6656667799999999 999998 77766678999999999999999997765555 89999999988


Q ss_pred             ec
Q 038320          447 HI  448 (467)
Q Consensus       447 ~l  448 (467)
                      ..
T Consensus       327 y~  328 (329)
T 3sb4_A          327 YK  328 (329)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=2.1e-16  Score=138.23  Aligned_cols=133  Identities=26%  Similarity=0.375  Sum_probs=104.8

Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhh-HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC
Q 038320          293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE-FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK  371 (467)
Q Consensus       293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~  371 (467)
                      +.++++++.+  +.+|..+.  .+++.|++++|.+++..+. .+..+.     +|++|++++|++++..|..+..+++|+
T Consensus        11 ~~l~~s~~~l--~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           11 TTVDCTGRGL--KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-----HLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TEEECTTSCC--SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-----TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEEcCCCCc--CcCccCCC--CCCCEEECCCCcCCccCCccccccCC-----CCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            6788888887  55666543  3788888888888776654 355554     788888888888887788888888888


Q ss_pred             EEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320          372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       372 ~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~  434 (467)
                      +|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|++.+..+.
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            888888888877777788888888888888888888888888888888888888888776553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=8.5e-16  Score=134.38  Aligned_cols=171  Identities=23%  Similarity=0.319  Sum_probs=130.8

Q ss_pred             CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcc-cccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320          269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE  347 (467)
Q Consensus       269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~  347 (467)
                      +.++++++.++ .+|..+.  +++++|++++|.+ .+..+. .+..+++|++|++++|.+++..+..+..+.     +|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~   81 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-----HIQ   81 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-----TCC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-----cCC
Confidence            78999999986 5666543  3899999999998 544443 488999999999999999998888887776     899


Q ss_pred             EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCEEeCcCC
Q 038320          348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGN  426 (467)
Q Consensus       348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n  426 (467)
                      +|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.. +..  .++...+.++
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~  159 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGG  159 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGG
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCC
Confidence            9999999999988888999999999999999999988999999999999999999998765421 111  1222233344


Q ss_pred             CCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          427 PWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       427 ~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ......|.    .+......++..+.+.
T Consensus       160 ~~~C~~P~----~l~~~~l~~l~~~~~~  183 (192)
T 1w8a_A          160 AARCGAPS----KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             GCBBCSST----TTTTSBGGGSCTTTCC
T ss_pred             CCCCCCCh----HHcCCChhhCcHhhcC
Confidence            33433443    3444555566666443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.2e-17  Score=173.38  Aligned_cols=180  Identities=23%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             CcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHH
Q 038320          257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD  336 (467)
Q Consensus       257 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  336 (467)
                      ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+ + .+|..++.+++|++|+|++|.++ .+|..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-T-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-S-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-c-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            34555666677777777777766 5555556677777777777776 3 66666777777777777777776 4565565


Q ss_pred             hhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC-CCEEECcCCcCcccChhhhcCC
Q 038320          337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS-LRELYLHNNLMDGTIPKSLGKL  415 (467)
Q Consensus       337 ~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~l~~l  415 (467)
                      .+.     +|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..    
T Consensus       291 ~l~-----~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~----  360 (727)
T 4b8c_D          291 SCF-----QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE----  360 (727)
T ss_dssp             GGT-----TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             CCC-----CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence            555     7777777777776 55666777778888888888777777766544321 123567777777766653    


Q ss_pred             CCCCEEeCcCC--------CCcccCChhhhCCCCCCCEEeccCCCC
Q 038320          416 SHLVVLDISGN--------PWIGLVTEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       416 ~~L~~L~l~~n--------~~~~~~~~~~~~~l~~L~~l~l~~n~i  453 (467)
                        |+.|+++.|        .+.+..+. .+.++..+....+++|-+
T Consensus       361 --l~~l~l~~n~~~~~~~~~l~~~~~~-~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          361 --RRFIEINTDGEPQREYDSLQQSTEH-LATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             --------------------------------------------CC
T ss_pred             --cceeEeecccccccccCCccccccc-hhhcccccceeeeecccc
Confidence              455556555        22222222 344555666667777744

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3.1e-16  Score=131.21  Aligned_cols=130  Identities=24%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320          290 TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN  369 (467)
Q Consensus       290 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~  369 (467)
                      ++++.|++++|.+..+.+|..+..+++|+.|++++|.                             +++.  ..+..+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----------------------------l~~~--~~~~~l~~   65 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-----------------------------LTSI--ANLPKLNK   65 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-----------------------------CCCC--TTCCCCTT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-----------------------------CCCc--hhhhcCCC
Confidence            4566666666665214455544555555555555544                             4433  44555666


Q ss_pred             CCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCC--hhhhCCCCCCCEE
Q 038320          370 LKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVT--EVHFSKLKNLKEL  446 (467)
Q Consensus       370 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~l  446 (467)
                      |++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+  ...+..+++|+.|
T Consensus        66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            66666666666655566555566667777766666642 33566666777777777776665544  1246666777777


Q ss_pred             eccC
Q 038320          447 HIAK  450 (467)
Q Consensus       447 ~l~~  450 (467)
                      ++++
T Consensus       146 ~l~d  149 (149)
T 2je0_A          146 DGYD  149 (149)
T ss_dssp             TTBC
T ss_pred             cCCC
Confidence            6653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.4e-15  Score=129.91  Aligned_cols=132  Identities=27%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             CCCCEEeccCCccc-cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320          266 SKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS  344 (467)
Q Consensus       266 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  344 (467)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+ .+.  ..+..+++|++|++++|.+++.              
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~Ls~N~l~~~--------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV--SNLPKLPKLKKLELSENRIFGG--------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC--SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh--hhhccCCCCCEEECcCCcCchH--------------
Confidence            44555555555554 34444445555555555555554 222  3444444555555555544443              


Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccc-ccccccCCCCCCEEECcCCcCcccCh---hhhcCCCCCCE
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGS-IPESIGNLSSLRELYLHNNLMDGTIP---KSLGKLSHLVV  420 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~  420 (467)
                                     +|..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|++
T Consensus        87 ---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           87 ---------------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             ---------------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             ---------------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence                           334444444555555555544432 11345555555666666655553333   35555666666


Q ss_pred             EeCcCCCCc
Q 038320          421 LDISGNPWI  429 (467)
Q Consensus       421 L~l~~n~~~  429 (467)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2.7e-15  Score=125.47  Aligned_cols=127  Identities=24%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             CCCCEEeccCCccc-cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320          266 SKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS  344 (467)
Q Consensus       266 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  344 (467)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+ .+.  ..+..+++|++|++++|.+++..|..+..++     
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence            56677777777776 56666667777777777777777 333  5566677777777777776665555544443     


Q ss_pred             CccEEECcCCCCCcC-CCccccCCCCCCEEEccCCcCccccc---ccccCCCCCCEEECc
Q 038320          345 SLESLDLGQNNLGGF-LPNSLGQLENLKILQLWGNLFRGSIP---ESIGNLSSLRELYLH  400 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~Ls  400 (467)
                      +|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            566666666665542 22344445555555555555443322   234444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.5e-15  Score=144.79  Aligned_cols=219  Identities=13%  Similarity=0.053  Sum_probs=128.6

Q ss_pred             CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc----CCCCcchhccCC
Q 038320          190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND----FNSSIPQWLLNI  265 (467)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~~l  265 (467)
                      +++|+.+++.+ .++....   ..+..+++|++++++.|.+....+..|..+.++..+....+.    ........+.++
T Consensus       100 ~~~L~~l~L~~-~i~~I~~---~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIED---AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECT---TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cCCCcEEECCc-cccchhH---HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence            56666666655 4444332   255666667777776666666666666666666665554421    111112234444


Q ss_pred             CCCC-EEeccCCccccccchhh----hCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320          266 SKLA-HLDLSANNLQGNIPDAF----ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK  340 (467)
Q Consensus       266 ~~L~-~L~l~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  340 (467)
                      ..|+ .+.+....   .++..+    ....+++.+.+.++-. ..........+++|+.+++++|.++......+..+. 
T Consensus       176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-  250 (329)
T 3sb4_A          176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-  250 (329)
T ss_dssp             CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-
T ss_pred             cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-
Confidence            5555 33332211   122111    1234455555544321 111111112356777777777766654444444444 


Q ss_pred             ccCCCccEEECcCCCCCcCCCccccCCCCCC-EEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320          341 CANSSLESLDLGQNNLGGFLPNSLGQLENLK-ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV  419 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  419 (467)
                          +|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|.++...+..|.++++|+
T Consensus       251 ----~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          251 ----YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             ----TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             ----CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence                7777777776 6656667788888888 888888 66655567788889999999888888866777888888888


Q ss_pred             EEeC
Q 038320          420 VLDI  423 (467)
Q Consensus       420 ~L~l  423 (467)
                      .++.
T Consensus       325 ~ly~  328 (329)
T 3sb4_A          325 LIYK  328 (329)
T ss_dssp             EEEC
T ss_pred             hhcc
Confidence            8864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=6.7e-15  Score=128.68  Aligned_cols=128  Identities=27%  Similarity=0.325  Sum_probs=79.2

Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCE
Q 038320          293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI  372 (467)
Q Consensus       293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  372 (467)
                      +.++++++.+  ..+|..+  .++|+.|++++|.++ .+|..+..+.     +|++|++++|.+++..+..|..+++|++
T Consensus        13 ~~l~~~~~~l--~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-----~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGL--KVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-----HLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSCC--SSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCC--CcCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-----CCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            4677777766  3455433  246677777777665 3334444443     6666666666666655566666666666


Q ss_pred             EEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcc
Q 038320          373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG  430 (467)
Q Consensus       373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~  430 (467)
                      |++++|.+++..+..|..+++|++|+|++|.++...+..+..+++|+.|++++|++..
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            6666666665555566666666666666666664444456666666666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.8e-14  Score=124.74  Aligned_cols=128  Identities=25%  Similarity=0.321  Sum_probs=100.0

Q ss_pred             CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320          269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES  348 (467)
Q Consensus       269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~  348 (467)
                      +.++++++.++ .+|..+  .++|++|++++|.+  ..+|..+..+++|+.|++++|.+++..+..+..+.     +|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-----~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-----QLLT   82 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCE
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-----CCCE
Confidence            56788888877 455443  35788888888888  36677888888888888888888877766666665     8888


Q ss_pred             EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320          349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG  406 (467)
Q Consensus       349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~  406 (467)
                      |++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8888888887777788888888888888888886555567788888888888888754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=2e-14  Score=123.85  Aligned_cols=86  Identities=26%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCc
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDIS  424 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  424 (467)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            33333333333333333333344444444444444443333333444444444444444443222233344444444444


Q ss_pred             CCCCcc
Q 038320          425 GNPWIG  430 (467)
Q Consensus       425 ~n~~~~  430 (467)
                      +|++.+
T Consensus       133 ~N~~~~  138 (177)
T 2o6r_A          133 TNPWDC  138 (177)
T ss_dssp             SSCBCC
T ss_pred             CCCeec
Confidence            444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.7e-14  Score=124.33  Aligned_cols=130  Identities=21%  Similarity=0.241  Sum_probs=107.7

Q ss_pred             CCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 038320          317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE  396 (467)
Q Consensus       317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~  396 (467)
                      .+.++++++.++... ..+       +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus         9 ~~~l~~~~~~l~~~p-~~~-------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGI-------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTC-------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCccCC-CCC-------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            456667776665432 111       137899999999998777777899999999999999999766677899999999


Q ss_pred             EECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320          397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       397 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      |++++|.+++..+..+..+++|++|++++|++++..+. .|..+++|+.|++++|++..
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCC
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH-HhcCCcccCEEEecCCCeec
Confidence            99999999977777789999999999999999865554 78899999999999996653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=5.3e-13  Score=129.99  Aligned_cols=87  Identities=9%  Similarity=0.095  Sum_probs=51.0

Q ss_pred             CccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC
Q 038320          361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL  440 (467)
Q Consensus       361 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  440 (467)
                      ...|..+++|+.+++.+ .++......|.+|++|+.+.+..+ ++..-...|.++ +|+.+++.+|........ .|.++
T Consensus       293 ~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~-~F~~~  368 (401)
T 4fdw_A          293 PYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK-VWYGF  368 (401)
T ss_dssp             TTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS-SCCCS
T ss_pred             HHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc-cccCC
Confidence            44566666666666663 344344455666677777776443 443445566666 677777777665543333 56666


Q ss_pred             C-CCCEEeccCC
Q 038320          441 K-NLKELHIAKY  451 (467)
Q Consensus       441 ~-~L~~l~l~~n  451 (467)
                      + .++.|.+..+
T Consensus       369 ~~~l~~l~vp~~  380 (401)
T 4fdw_A          369 PDDITVIRVPAE  380 (401)
T ss_dssp             CTTCCEEEECGG
T ss_pred             CCCccEEEeCHH
Confidence            4 4666666555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.53  E-value=7.7e-13  Score=128.86  Aligned_cols=269  Identities=12%  Similarity=0.147  Sum_probs=138.5

Q ss_pred             CCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCC
Q 038320          139 LEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP  218 (467)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~  218 (467)
                      +..++.+.+.++ ++..-...|.++ +|+.+.+.++ ++.++..+   |.++ +|+.+.+.. .+.....   ..+..++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a---F~~~-~L~~i~lp~-~l~~I~~---~aF~~c~  180 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMA---FFNS-TVQEIVFPS-TLEQLKE---DIFYYCY  180 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT---TTTC-CCCEEECCT-TCCEECS---STTTTCT
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHh---cCCC-CceEEEeCC-CccEehH---HHhhCcc
Confidence            355566665543 332223345554 5667766554 55555443   3332 466666654 3333321   2455666


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCC
Q 038320          219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS  298 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  298 (467)
                      +|+.++++.|.+.......|. +.+|+.+.+..+ ++..-...|.++++|+.+.+..+ ++..-...|.+ .+|+.+.+.
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp  256 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP  256 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred             cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence            666666666666665555554 456666666533 43333445556666666666553 33233344444 556666663


Q ss_pred             CCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCC
Q 038320          299 ENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN  378 (467)
Q Consensus       299 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  378 (467)
                      ++ + ......+|.++++|+.+++.++.+.......+....+..+++|+.+.+.+ .++.....+|.++++|+.+.+..+
T Consensus       257 ~~-i-~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          257 NG-V-TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TT-C-CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CC-c-cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            32 2 23334456666666666666655442111122222223333666666663 354444455666666666666443


Q ss_pred             cCcccccccccCCCCCCEEECcCCcCcccChhhhcCCC-CCCEEeCcCCC
Q 038320          379 LFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLS-HLVVLDISGNP  427 (467)
Q Consensus       379 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~  427 (467)
                       ++......|.++ +|+.+++++|.+....+..+..++ +++.|.+-.+.
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence             433334456666 666666666655544444555553 45566555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=2e-14  Score=123.77  Aligned_cols=132  Identities=22%  Similarity=0.213  Sum_probs=62.0

Q ss_pred             hhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcccc
Q 038320          286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG  365 (467)
Q Consensus       286 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~  365 (467)
                      +.++++|+.|++++|.+ . .++......++|++|++++|.+++.  ..+..+     ++|++|++++|.+++..+..+.
T Consensus        15 ~~~~~~L~~L~l~~n~l-~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKI-P-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLL-----RRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             EECTTSCEEEECTTSCC-C-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCC-----SSCCEEECCSSCCCEECSCHHH
T ss_pred             cCCcCCceEEEeeCCCC-c-hhHHhhhcCCCCCEEECCCCCCCcc--cccccC-----CCCCEEECCCCcccccCcchhh
Confidence            34556666666666666 2 2332222223555555555555532  112221     2455555555555543333334


Q ss_pred             CCCCCCEEEccCCcCcccccc--cccCCCCCCEEECcCCcCcccChh----hhcCCCCCCEEeCcCCCC
Q 038320          366 QLENLKILQLWGNLFRGSIPE--SIGNLSSLRELYLHNNLMDGTIPK----SLGKLSHLVVLDISGNPW  428 (467)
Q Consensus       366 ~l~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~l~~n~~  428 (467)
                      .+++|++|++++|.++ .+|.  .+..+++|+.|++++|.++ .+|.    .+..+++|+.|++++|..
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            4555555555555553 2333  3444555555555555554 2333    244455555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=9.5e-13  Score=128.52  Aligned_cols=156  Identities=13%  Similarity=0.069  Sum_probs=78.9

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320          106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE  185 (467)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~  185 (467)
                      .-..+|..+++|+.+.|..+ ++.. -..+|.++++|+.+++..+ +...-...|.++.+|+.+.+..+ +..+...+  
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a--  135 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA--  135 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT--
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee--
Confidence            33456788889999998643 5533 3467888999999998765 44233456778888888776543 22222222  


Q ss_pred             hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 038320          186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI  265 (467)
Q Consensus       186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  265 (467)
                       +.++..++..........+     ...+..+++|+.+.+..+ +.......|.++.+|+.+.+..+ ++......+.++
T Consensus       136 -F~~~~~~~~~~~~~~~~i~-----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~  207 (394)
T 4fs7_A          136 -FKGCDFKEITIPEGVTVIG-----DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC  207 (394)
T ss_dssp             -TTTCCCSEEECCTTCCEEC-----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred             -eecccccccccCccccccc-----hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence             2333222222221111111     113445555555555432 22233344555555555555443 221222334444


Q ss_pred             CCCCEEeccC
Q 038320          266 SKLAHLDLSA  275 (467)
Q Consensus       266 ~~L~~L~l~~  275 (467)
                      ..|+.+.+..
T Consensus       208 ~~L~~i~~~~  217 (394)
T 4fs7_A          208 ILLENMEFPN  217 (394)
T ss_dssp             TTCCBCCCCT
T ss_pred             cccceeecCC
Confidence            4455444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4.1e-14  Score=121.82  Aligned_cols=130  Identities=22%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320          264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN  343 (467)
Q Consensus       264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  343 (467)
                      ++++|+.|++++|.++. ++......++|++|++++|.+ .+ + ..+..+++|++|++++|.+++..+..+..++    
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l-~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----   88 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI-RK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP----   88 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCC-CE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT----
T ss_pred             CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCC-Cc-c-cccccCCCCCEEECCCCcccccCcchhhcCC----
Confidence            34445555555555442 222212222555555555554 22 1 3444445555555555555433333333333    


Q ss_pred             CCccEEECcCCCCCcCCCc--cccCCCCCCEEEccCCcCccccccc----ccCCCCCCEEECcCCcC
Q 038320          344 SSLESLDLGQNNLGGFLPN--SLGQLENLKILQLWGNLFRGSIPES----IGNLSSLRELYLHNNLM  404 (467)
Q Consensus       344 ~~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~Ls~n~l  404 (467)
                       +|++|++++|.++. +|.  .+..+++|++|++++|.++ .+|..    +..+++|+.|++++|..
T Consensus        89 -~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 -DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             -TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             -CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence             45555555555532 222  4444555555555555554 22332    44455555555555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=3.4e-16  Score=137.68  Aligned_cols=127  Identities=24%  Similarity=0.338  Sum_probs=65.7

Q ss_pred             hhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320          285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL  364 (467)
Q Consensus       285 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l  364 (467)
                      .+..+++|++|++++|.+ .+ +| .+..+++|++|++++|.++ .+|..+..++     +|++|++++|++++. | .+
T Consensus        43 ~~~~l~~L~~L~ls~n~l-~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~-----~L~~L~L~~N~l~~l-~-~~  111 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-EK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD-----TLEELWISYNQIASL-S-GI  111 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-SC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH-----HCSEEEEEEEECCCH-H-HH
T ss_pred             HHhcCCCCCEEECCCCCC-cc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC-----cCCEEECcCCcCCcC-C-cc
Confidence            455555555555555555 22 33 4555555555555555555 2333333333     555566665555542 2 34


Q ss_pred             cCCCCCCEEEccCCcCccccc-ccccCCCCCCEEECcCCcCcccChh----------hhcCCCCCCEEe
Q 038320          365 GQLENLKILQLWGNLFRGSIP-ESIGNLSSLRELYLHNNLMDGTIPK----------SLGKLSHLVVLD  422 (467)
Q Consensus       365 ~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~----------~l~~l~~L~~L~  422 (467)
                      ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            555555556665555553211 2455566666666666665544333          245556666555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=3.8e-15  Score=143.81  Aligned_cols=186  Identities=18%  Similarity=0.153  Sum_probs=110.4

Q ss_pred             CCCCEEeccCCccccccchhhh-----CCCCCCEEeCCCCCCCCCCCccc-ccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          266 SKLAHLDLSANNLQGNIPDAFA-----NMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       266 ~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      +.|+.|++++|.++......+.     ..++|+.|+|++|.+ ++..... ...+++|+.|++++|.+++.....+....
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4566666666666543333222     225677777777766 3222222 22345677777777777766666655443


Q ss_pred             cccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----
Q 038320          340 KCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT----  407 (467)
Q Consensus       340 ~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----  407 (467)
                      ....++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            22334788888888877642    334446677788888888887653    244556677888888888888753    


Q ss_pred             ChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC---CC--CCEEe--ccCCCC
Q 038320          408 IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL---KN--LKELH--IAKYSL  453 (467)
Q Consensus       408 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l---~~--L~~l~--l~~n~i  453 (467)
                      ++..+..+++|++|+|++|+++..... .+..+   ..  |+.+.  +..|.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~-~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQ-VLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHH-HHHHCC------CEEECCCC----C
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHH-HHHHHhcCCCccchhhHhhhcCCcc
Confidence            444555678888888888887654333 23222   21  66666  555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=7.8e-16  Score=135.38  Aligned_cols=134  Identities=26%  Similarity=0.314  Sum_probs=105.2

Q ss_pred             hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      ..+..+++|+.|++++|.+++ +| .+..+++|++|++++|.+ . .+|..+..+++|+.|++++|.+++. + .+..++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-K-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-C-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-c-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence            377788888888888888875 55 778888888888888887 3 5676677778899999999988873 3 456665


Q ss_pred             cccCCCccEEECcCCCCCcCCC-ccccCCCCCCEEEccCCcCccccccc----------ccCCCCCCEEECcCCcCcc
Q 038320          340 KCANSSLESLDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPES----------IGNLSSLRELYLHNNLMDG  406 (467)
Q Consensus       340 ~~~~~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~~~~L~~L~Ls~n~l~~  406 (467)
                           +|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|..          +..+++|+.|+  ++.++.
T Consensus       116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                 89999999999885432 46888999999999999998766542          67899999987  666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=6.1e-13  Score=113.65  Aligned_cols=108  Identities=21%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             CCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 038320          317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE  396 (467)
Q Consensus       317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~  396 (467)
                      .+.+++++|.++. +|..+.       ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~-------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP-------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC-------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCc-cCccCC-------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            4566666666654 222211       25666777777666666666666666777777766666554555566666666


Q ss_pred             EECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320          397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       397 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      |+|++|++++..+..+..+++|++|++++|++....
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            676666666555555666666666666666665443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=1e-11  Score=121.18  Aligned_cols=312  Identities=11%  Similarity=0.029  Sum_probs=209.2

Q ss_pred             cccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCC
Q 038320          103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESD  182 (467)
Q Consensus       103 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~  182 (467)
                      ++..-..+|.+|++|+.+++..+ ++.. -...|.++++|+.+.+..+ +...-...|.++..++......  ...+...
T Consensus        82 i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~  156 (394)
T 4fs7_A           82 VREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDE  156 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTT
T ss_pred             ccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchh
Confidence            44334457899999999999765 4422 3457888999998877654 3323334566665443332222  2223332


Q ss_pred             ChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhc
Q 038320          183 DVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWL  262 (467)
Q Consensus       183 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  262 (467)
                      +   +.++++|+.+.+.++.. ...   ...+..+++|+.+.+..+ +.......+.++..|+.+.+..+..  .+....
T Consensus       157 a---F~~c~~L~~i~l~~~~~-~I~---~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~  226 (394)
T 4fs7_A          157 A---FATCESLEYVSLPDSME-TLH---NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFA  226 (394)
T ss_dssp             T---TTTCTTCCEEECCTTCC-EEC---TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTT
T ss_pred             h---hcccCCCcEEecCCccc-eec---cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhh
Confidence            2   78899999999976532 222   236778899999998765 5556667788889999888766543  233444


Q ss_pred             cCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhccc
Q 038320          263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA  342 (467)
Q Consensus       263 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~  342 (467)
                      ....+|+.+.+.... +......+..+..++.+.+..+..  ......+..+..++.+......+..   ..     +..
T Consensus       227 ~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~---~~-----F~~  295 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPE---KT-----FYG  295 (394)
T ss_dssp             TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEECT---TT-----TTT
T ss_pred             cccCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeecc---cc-----ccc
Confidence            556788888886542 323445677889999999987653  3344567788888888877654332   11     222


Q ss_pred             CCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEe
Q 038320          343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD  422 (467)
Q Consensus       343 ~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  422 (467)
                      ..+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+++..+ ++..-..+|.+|++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            347888888754 55455667888999999999754 55444567888999999999776 6545567888999999999


Q ss_pred             CcCCCCcccCChhhhCCCCCCCEE
Q 038320          423 ISGNPWIGLVTEVHFSKLKNLKEL  446 (467)
Q Consensus       423 l~~n~~~~~~~~~~~~~l~~L~~l  446 (467)
                      +..+  ...+.. .|.++++|+.+
T Consensus       373 lp~~--~~~~~~-~F~~c~~L~~I  393 (394)
T 4fs7_A          373 LPKR--LEQYRY-DFEDTTKFKWI  393 (394)
T ss_dssp             EEGG--GGGGGG-GBCTTCEEEEE
T ss_pred             ECCC--CEEhhh-eecCCCCCcEE
Confidence            8765  233444 68888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=1.3e-12  Score=112.05  Aligned_cols=106  Identities=19%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      +.+++++|.++. +|..+.       ++|++|++++|++++..|..+..+++|++|++++|.+++..+..|..+++|++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~-------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP-------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC-------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCCc-cCCCcC-------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            566666666643 222221       256666666666666666666666666666666666665444445666666666


Q ss_pred             ECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320          398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL  431 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  431 (467)
                      +|++|++++..+..+..+++|+.|++++|++...
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            6666666644444466666666666666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.41  E-value=4.4e-14  Score=136.31  Aligned_cols=161  Identities=20%  Similarity=0.182  Sum_probs=123.9

Q ss_pred             CCCCCEEeCCCCCCCCCCCccc----cc-CCCCCCEEeccCCcCCCchhhHHHh-hhcccCCCccEEECcCCCCCcCCCc
Q 038320          289 MTSLRELDLSENSLIGGQIPKD----LG-SLCNLWDLDLSGNDLDGEIIEFVDR-LSKCANSSLESLDLGQNNLGGFLPN  362 (467)
Q Consensus       289 l~~L~~L~L~~n~l~~~~~~~~----l~-~l~~L~~L~l~~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~n~i~~~~~~  362 (467)
                      .++|+.|++++|.+ +......    +. ..++|+.|++++|.+++.....+.. +.     +|+.|+|++|.+++....
T Consensus        71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-----~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-----RARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-----TEEEEECCSSCCCHHHHH
T ss_pred             HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-----hccHhhcCCCCCCHHHHH
Confidence            46899999999998 4432222    33 2379999999999998766655544 33     899999999999865333


Q ss_pred             cc-----cCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----ChhhhcCCCCCCEEeCcCCCCc
Q 038320          363 SL-----GQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISGNPWI  429 (467)
Q Consensus       363 ~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~  429 (467)
                      .+     ...++|++|++++|.+++.    ++..+..+++|++|+|++|.+++.    ++..+...++|++|+|++|.++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            33     3568999999999999753    444557889999999999999764    4667788899999999999987


Q ss_pred             ccCCh---hhhCCCCCCCEEeccCCCCCC
Q 038320          430 GLVTE---VHFSKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       430 ~~~~~---~~~~~l~~L~~l~l~~n~i~~  455 (467)
                      .....   ..+...++|+.|+|++|+|++
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            54322   145567899999999998863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.7e-12  Score=110.88  Aligned_cols=107  Identities=28%  Similarity=0.314  Sum_probs=70.2

Q ss_pred             CCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC
Q 038320          292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK  371 (467)
Q Consensus       292 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~  371 (467)
                      .+.+++++|.+  ..+|..+  .++|++|++++|.+++..+..+..+.     +|++|++++|++++..+..+..+++|+
T Consensus        11 ~~~l~~s~n~l--~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           11 GTTVDCSGKSL--ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-----QLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             TTEEECTTSCC--SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEEEeCCCCc--CccCccC--CCCCcEEEcCCCcCCccChhhhcCcc-----cCCEEECCCCCcCccChhhccCCCCCC
Confidence            45677777766  3355443  25677777777777766666555554     677777777777766555666777777


Q ss_pred             EEEccCCcCcccccccccCCCCCCEEECcCCcCccc
Q 038320          372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT  407 (467)
Q Consensus       372 ~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  407 (467)
                      +|++++|.+++..+..+..+++|++|+|++|.+...
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            777777777755555566777777777777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=6.6e-12  Score=107.53  Aligned_cols=105  Identities=24%  Similarity=0.287  Sum_probs=68.4

Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCE
Q 038320          293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI  372 (467)
Q Consensus       293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  372 (467)
                      +.+++++|.+  +.+|..+.  ++|+.|++++|.+++..+..+..+.     +|++|+|++|++++..+..+..+++|++
T Consensus        15 ~~l~~~~n~l--~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           15 TLVNCQNIRL--ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-----NLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cEEEeCCCCC--CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-----CCCEEECCCCCCCccChhHhCCcchhhE
Confidence            5667777766  44555443  5677777777777766666555554     6777777777777655555666777777


Q ss_pred             EEccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320          373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG  406 (467)
Q Consensus       373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~  406 (467)
                      |++++|.+++..+..+..+++|++|+|++|.+..
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             EECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            7777777765444446667777777777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=3.8e-11  Score=114.96  Aligned_cols=98  Identities=23%  Similarity=0.211  Sum_probs=83.5

Q ss_pred             ccccccCccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320          102 QLEGEISPSVLDLKHLNYLDLSL-NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE  180 (467)
Q Consensus       102 ~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~  180 (467)
                      .+++ +|. +..+++|++|+|++ |.+++. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.++.++
T Consensus        20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           20 ALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             CCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            4554 677 99999999999996 999865 5578999999999999999999888888999999999999999999988


Q ss_pred             CCChhhcCCCCCCCEEECCCcCCCCC
Q 038320          181 SDDVEWLSRLSSLQYLNLEGVDLSKA  206 (467)
Q Consensus       181 ~~~~~~l~~l~~L~~L~L~~n~~~~~  206 (467)
                      ...   +..++ |+.|++.+|.+...
T Consensus        97 ~~~---~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           97 WKT---VQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             STT---TCSCC-CCEEECCSSCCCCC
T ss_pred             HHH---cccCC-ceEEEeeCCCccCC
Confidence            764   33333 99999999988754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=5.1e-11  Score=114.11  Aligned_cols=102  Identities=23%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             EECcCC-CCCcCCCccccCCCCCCEEEccC-CcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320          349 LDLGQN-NLGGFLPNSLGQLENLKILQLWG-NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       349 L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  426 (467)
                      ++++++ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 4442 333 44444555555543 4444444444445555555555555555444444455555555555555


Q ss_pred             CCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320          427 PWIGLVTEVHFSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       427 ~~~~~~~~~~~~~l~~L~~l~l~~n~i~  454 (467)
                      ++++..+. .|..++ |+.|+|.+|++.
T Consensus        91 ~l~~~~~~-~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWK-TVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCST-TTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHH-HcccCC-ceEEEeeCCCcc
Confidence            54433332 333333 555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.20  E-value=2.4e-09  Score=104.36  Aligned_cols=317  Identities=9%  Similarity=0.069  Sum_probs=177.7

Q ss_pred             ccccCCC-CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc---CCCCCCccCCCCCcCCeeeccCccCCCCCCCCh
Q 038320          109 PSVLDLK-HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS---FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDV  184 (467)
Q Consensus       109 ~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~  184 (467)
                      .+|.+++ .|+.+.+..+ ++.. -..+|.++++|+.+.+..+.   ++..-...|.++.+|+.+.+..+ ++.++... 
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a-  132 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA-  132 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT-
T ss_pred             hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh-
Confidence            4566664 5888888653 4433 45678888889988887653   33223355778888888777653 34444433 


Q ss_pred             hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccC
Q 038320          185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN  264 (467)
Q Consensus       185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  264 (467)
                        +..+.+|+.+.+..+. ....   ...+..+..|+.+.+..+ +.......|.. ..|+.+.+..+-. ......+.+
T Consensus       133 --F~~c~~L~~i~lp~~~-~~I~---~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          133 --FHHCEELDTVTIPEGV-TSVA---DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             --TTTCTTCCEEECCTTC-CEEC---TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred             --hhhhccccccccccee-eeec---ccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence              6777888888886432 2222   125666777888777654 33333334433 4677777654322 122344556


Q ss_pred             CCCCCEEeccCCccccccch-------------hhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCch
Q 038320          265 ISKLAHLDLSANNLQGNIPD-------------AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI  331 (467)
Q Consensus       265 l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  331 (467)
                      +.+++...............             .......+..+.+... + ......+|..+..|+.+.+..+... ..
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v-~~i~~~aF~~c~~L~~i~lp~~~~~-I~  280 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-V-ARIETHAFDSCAYLASVKMPDSVVS-IG  280 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-E-EEECTTTTTTCSSCCEEECCTTCCE-EC
T ss_pred             ccccceecccccccccccceeecccccccccccccccccccceEEcCCc-c-eEcccceeeecccccEEecccccce-ec
Confidence            66666665544332210000             0111223333433221 1 1122345677778888877654321 11


Q ss_pred             hhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh
Q 038320          332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS  411 (467)
Q Consensus       332 ~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  411 (467)
                      ...     +.....|+.+.+. +.++......|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++..-..+
T Consensus       281 ~~a-----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a  352 (394)
T 4gt6_A          281 TGA-----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA  352 (394)
T ss_dssp             TTT-----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred             Ccc-----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence            122     2223378888875 3455455567888888888888764 44344566888888888888654 55445577


Q ss_pred             hcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCC
Q 038320          412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       412 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i  453 (467)
                      |.+|++|+.+++.++....   . .+..+.+|+.+.+..+.+
T Consensus       353 F~~C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          353 FSNCTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GTTCTTCCEEEESSCHHHH---H-TCBCCCCC----------
T ss_pred             hhCCCCCCEEEECCceeeh---h-hhhccCCCCEEEeCCCCE
Confidence            8888888888888875321   2 566778888888877643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.17  E-value=8.7e-09  Score=100.30  Aligned_cols=295  Identities=12%  Similarity=0.119  Sum_probs=194.0

Q ss_pred             CcccCCCC-CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCcc---CCCCCCCChhhcCCCCCCCEEECCCcCCCCCCC
Q 038320          133 PNFLGSLE-KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY---YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGS  208 (467)
Q Consensus       133 ~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~---~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~  208 (467)
                      ..+|.+++ .|+.+.+..+ ++..-...|.+|++|+.+.+..+.   ++.+...+   |..+.+|+.+.+..+ ++... 
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a---F~~c~~L~~i~~~~~-~~~I~-  129 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA---FMFCSELTDIPILDS-VTEID-  129 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT---TTTCTTCCBCGGGTT-CSEEC-
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh---chhcccceeeccCCc-cceeh-
Confidence            34677774 5999999764 543445678999999999998764   44444443   778888888777553 22222 


Q ss_pred             chhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhC
Q 038320          209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN  288 (467)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  288 (467)
                        ...+..+.+|+.+.+.. .+.......+..+.+|+.+.+..+ ++ .+........+|+.+.+..+.. ......+.+
T Consensus       130 --~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          130 --SEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             --TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCC-EECTTTTTT
T ss_pred             --hhhhhhhcccccccccc-eeeeecccceecccccccccccce-ee-EeccccccccceeEEEECCccc-ccccchhhh
Confidence              23667789999999974 345555667888899999988765 32 2333222346788888865433 244556778


Q ss_pred             CCCCCEEeCCCCCCCCCCCccc--------------ccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC
Q 038320          289 MTSLRELDLSENSLIGGQIPKD--------------LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN  354 (467)
Q Consensus       289 l~~L~~L~L~~n~l~~~~~~~~--------------l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  354 (467)
                      +..++..........  .....              +.....+..+.+... +     ..++...+.....|+.+.+..+
T Consensus       204 c~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v-----~~i~~~aF~~c~~L~~i~lp~~  275 (394)
T 4gt6_A          204 CFALSTITSDSESYP--AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-V-----ARIETHAFDSCAYLASVKMPDS  275 (394)
T ss_dssp             CTTCCEEEECCSSSC--BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-E-----EEECTTTTTTCSSCCEEECCTT
T ss_pred             ccccceecccccccc--cccceeecccccccccccccccccccceEEcCCc-c-----eEcccceeeecccccEEecccc
Confidence            888888877655431  11111              111223333333221 1     1111222233348899998765


Q ss_pred             CCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320          355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE  434 (467)
Q Consensus       355 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~  434 (467)
                      ..+ .....|.++++|+.+.+.. .++......|.+|.+|+.+++..+ ++.....+|.+|.+|+.+.+-.+  ...+..
T Consensus       276 ~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~  350 (394)
T 4gt6_A          276 VVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE  350 (394)
T ss_dssp             CCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG
T ss_pred             cce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH
Confidence            433 4456788999999999974 455455567889999999999865 55445678999999999999655  345666


Q ss_pred             hhhCCCCCCCEEeccCCC
Q 038320          435 VHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       435 ~~~~~l~~L~~l~l~~n~  452 (467)
                      ..|.+|++|+.+++.++.
T Consensus       351 ~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECCce
Confidence            699999999999999873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.09  E-value=4.6e-11  Score=114.27  Aligned_cols=84  Identities=15%  Similarity=0.194  Sum_probs=42.2

Q ss_pred             CCCCCCEEEccCCcCccccccccc---CCCCCCEEECcCCcCcccC----hhhhcCCCCCCEEeCcCCCCcccCChhhhC
Q 038320          366 QLENLKILQLWGNLFRGSIPESIG---NLSSLRELYLHNNLMDGTI----PKSLGKLSHLVVLDISGNPWIGLVTEVHFS  438 (467)
Q Consensus       366 ~l~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  438 (467)
                      .+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++..... .+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~  328 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQ  328 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHH
Confidence            355666666666665543322222   3556666666666665432    22333456666666666665543322 222


Q ss_pred             C-CCCCCEEeccCCC
Q 038320          439 K-LKNLKELHIAKYS  452 (467)
Q Consensus       439 ~-l~~L~~l~l~~n~  452 (467)
                      . +  ...+++++++
T Consensus       329 ~al--g~~~~~~~~~  341 (362)
T 2ra8_A          329 KSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHC--CSEEECCSBC
T ss_pred             HHc--CCEEEecCCc
Confidence            1 1  2445666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=2.5e-10  Score=109.17  Aligned_cols=205  Identities=18%  Similarity=0.200  Sum_probs=128.1

Q ss_pred             CCCCCEEECCCCcCcc-cC-------CccccCCCCCcEEEccCCcCC---------CCcchhccCCCCCCEEeccCCccc
Q 038320          217 LPSLSELHLPACGLFE-FP-------PLSVVNFSSLLFLDLSSNDFN---------SSIPQWLLNISKLAHLDLSANNLQ  279 (467)
Q Consensus       217 l~~L~~L~l~~n~~~~-~~-------~~~l~~l~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~  279 (467)
                      ...++.|.+......+ ..       .....++++|+.|.+......         +.+...+..+++|+.|++++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            4567788887655442 11       223456789999988664321         234455667888999999887311


Q ss_pred             cccchhhhCCCCCCEEeCCCCCCCCCCCccccc--CCCCCCEEeccC--CcCCCc-hhhHHHhhhc-ccCCCccEEECcC
Q 038320          280 GNIPDAFANMTSLRELDLSENSLIGGQIPKDLG--SLCNLWDLDLSG--NDLDGE-IIEFVDRLSK-CANSSLESLDLGQ  353 (467)
Q Consensus       280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-~~~~l~~~~~-~~~~~L~~L~L~~  353 (467)
                       .++. + .+++|++|++..+.+ .......+.  .+|+|+.|+|+.  +...+. ....+..... ..+++|+.|++.+
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD  261 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred             -eecc-c-cCCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence             2232 3 378899999888776 333333333  678899888853  222221 1222222211 2346899999988


Q ss_pred             CCCCcCCCccc---cCCCCCCEEEccCCcCcccc----cccccCCCCCCEEECcCCcCcccChhhhcC-CCCCCEEeCcC
Q 038320          354 NNLGGFLPNSL---GQLENLKILQLWGNLFRGSI----PESIGNLSSLRELYLHNNLMDGTIPKSLGK-LSHLVVLDISG  425 (467)
Q Consensus       354 n~i~~~~~~~l---~~l~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~  425 (467)
                      |.+.+..+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.+++.....+.. +  ...++++.
T Consensus       262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~  339 (362)
T 2ra8_A          262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD  339 (362)
T ss_dssp             CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred             CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence            88875432222   35788999999988887643    333445788999999988888765555554 3  46688888


Q ss_pred             CC
Q 038320          426 NP  427 (467)
Q Consensus       426 n~  427 (467)
                      ++
T Consensus       340 ~~  341 (362)
T 2ra8_A          340 SQ  341 (362)
T ss_dssp             BC
T ss_pred             Cc
Confidence            76

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.93  E-value=1.8e-07  Score=90.40  Aligned_cols=304  Identities=10%  Similarity=0.051  Sum_probs=163.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320          112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS  191 (467)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~  191 (467)
                      ....+|+.+.+... ++.. -..+|.++.+|+.+++..+ ++..-...|.++ +|+.+.+..+ +..+...+   +.. .
T Consensus        43 ~~~~~i~~v~ip~~-vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a---F~~-~  113 (379)
T 4h09_A           43 KDRDRISEVRVNSG-ITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYV---FQG-T  113 (379)
T ss_dssp             GGGGGCSEEEECTT-EEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTT---TTT-C
T ss_pred             ccccCCEEEEeCCC-ccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccce---ecc-C
Confidence            34456666666532 3322 2346777777777777643 332233445555 5666665432 34444433   233 3


Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCC------------Ccc
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS------------SIP  259 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~  259 (467)
                      +|+.+.+..+. .....   ..+.. .+++.+.+.. .+.......+..+.+++.+.+..+....            ...
T Consensus       114 ~L~~i~lp~~~-~~i~~---~~F~~-~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (379)
T 4h09_A          114 DLDDFEFPGAT-TEIGN---YIFYN-SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL  187 (379)
T ss_dssp             CCSEEECCTTC-CEECT---TTTTT-CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred             CcccccCCCcc-ccccc---ccccc-ceeeeeeccc-eeeccccchhcccccccccccccccceeecccceeccccccee
Confidence            67777775432 11111   12222 2455554443 2333334455666666666665433211            111


Q ss_pred             hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320          260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS  339 (467)
Q Consensus       260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~  339 (467)
                      ..+.....+..+.+..... ......+..+.+|+.+.+..+-  .......+..+..|+.+.+..+ ++......+... 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~-  262 (379)
T 4h09_A          188 ESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC-  262 (379)
T ss_dssp             EECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-
T ss_pred             cccccccccccccccccee-EEeecccccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCcccccee-
Confidence            2233444555555433221 1333445667777777776542  2233345667777887777654 222222222222 


Q ss_pred             cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320          340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV  419 (467)
Q Consensus       340 ~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  419 (467)
                          .+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.+|.+|+.+.+..+ ++..-..+|.+|++|+
T Consensus       263 ----~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          263 ----TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             ----TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ----ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence                36777777543 44344456777888888888877776555566778888888888654 4434456777888888


Q ss_pred             EEeCcCCCCcccCChhhhCCCCCC
Q 038320          420 VLDISGNPWIGLVTEVHFSKLKNL  443 (467)
Q Consensus       420 ~L~l~~n~~~~~~~~~~~~~l~~L  443 (467)
                      .+.+..+ + ..+....|.++..+
T Consensus       337 ~i~ip~~-v-~~I~~~aF~~c~~~  358 (379)
T 4h09_A          337 TISYPKS-I-TLIESGAFEGSSIT  358 (379)
T ss_dssp             CCCCCTT-C-CEECTTTTTTSSCC
T ss_pred             EEEECCc-c-CEEchhHhhCCCCC
Confidence            8887654 3 33444467666443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.88  E-value=1.9e-07  Score=90.33  Aligned_cols=292  Identities=12%  Similarity=0.126  Sum_probs=186.1

Q ss_pred             cccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh
Q 038320          134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA  213 (467)
Q Consensus       134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  213 (467)
                      .++....+|+.+.+... ++..-...|.+|.+|+.+++..+ ++.+...+   +.++ +|+.+.+..+ +......   .
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a---F~~c-~l~~i~~~~~-l~~I~~~---a  109 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGA---FADT-KLQSYTGMER-VKKFGDY---V  109 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTT---TTTC-CCCEEEECTT-CCEECTT---T
T ss_pred             cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhh---hcCC-CCceEECCce-eeEeccc---e
Confidence            34556778999988753 44334456899999999999754 66666665   4555 5777776543 2222211   3


Q ss_pred             cCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccc------------c
Q 038320          214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG------------N  281 (467)
Q Consensus       214 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------~  281 (467)
                      +.. .+|+.+.+..+ +.......+.++ +++.+.+..+ ++..-...+..+..++.+.+..+....            .
T Consensus       110 F~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  185 (379)
T 4h09_A          110 FQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT  185 (379)
T ss_dssp             TTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS
T ss_pred             ecc-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccc
Confidence            333 47888888754 333333344443 5666555443 222233456677778877765543221            1


Q ss_pred             cchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCC
Q 038320          282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP  361 (467)
Q Consensus       282 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~  361 (467)
                      ....+..+..+..+.+.....  ......+..+.+|+.+.+..+ +.......+..     ...|+.+.+..+ ++....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~-----~~~L~~i~lp~~-v~~I~~  256 (379)
T 4h09_A          186 ILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYG-----MKALDEIAIPKN-VTSIGS  256 (379)
T ss_dssp             EEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTT-----CSSCCEEEECTT-CCEECT
T ss_pred             eecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccC-----CccceEEEcCCC-ccEeCc
Confidence            112233455566666554322  233345667778888887654 22112222222     337999998765 554556


Q ss_pred             ccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320          362 NSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK  441 (467)
Q Consensus       362 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  441 (467)
                      ..+..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++..-...|.+|.+|+.+++..+  ...+....|.+|+
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~  333 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCC
Confidence            68888999999999765 44344556889999999999998887666788999999999999765  3456555899999


Q ss_pred             CCCEEeccCC
Q 038320          442 NLKELHIAKY  451 (467)
Q Consensus       442 ~L~~l~l~~n  451 (467)
                      +|+.+.+..+
T Consensus       334 ~L~~i~ip~~  343 (379)
T 4h09_A          334 ALSTISYPKS  343 (379)
T ss_dssp             TCCCCCCCTT
T ss_pred             CCCEEEECCc
Confidence            9999988654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=5.2e-09  Score=90.31  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             hhhhCCCCCCEEeCCCC-CCCCCC----CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC
Q 038320          284 DAFANMTSLRELDLSEN-SLIGGQ----IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG  357 (467)
Q Consensus       284 ~~l~~l~~L~~L~L~~n-~l~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~  357 (467)
                      ..+...+.|++|+|++| .+ +..    +...+...++|++|++++|.+.+.....+..... ..+.|++|+|++|.|+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCC
Confidence            33445566666666665 55 221    2223444555556666655555444433333211 1113444444444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=1.7e-08  Score=86.98  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=65.7

Q ss_pred             cccCCCCCCEEeccCC-cCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc-
Q 038320          310 DLGSLCNLWDLDLSGN-DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS-  383 (467)
Q Consensus       310 ~l~~l~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~-  383 (467)
                      .+...+.|++|++++| .+.+.....+...-. ..++|++|+|++|.+.+.    +...+...++|++|+|++|.+.+. 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            3455566666666666 666554444443321 123566666666666532    223334445666666666666542 


Q ss_pred             ---ccccccCCCCCCEEEC--cCCcCccc----ChhhhcCCCCCCEEeCcCCCCc
Q 038320          384 ---IPESIGNLSSLRELYL--HNNLMDGT----IPKSLGKLSHLVVLDISGNPWI  429 (467)
Q Consensus       384 ---~~~~l~~~~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~  429 (467)
                         +...+...++|++|+|  ++|.+.+.    +.+.+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               2344455566666666  56666543    3344455566777777666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=1.6e-07  Score=79.07  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             CccEEECcCCCCCcCCCccccCCCCCCEEEccCCc-CcccccccccCC----CCCCEEECcCCc-CcccChhhhcCCCCC
Q 038320          345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL-FRGSIPESIGNL----SSLRELYLHNNL-MDGTIPKSLGKLSHL  418 (467)
Q Consensus       345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L  418 (467)
                      +|+.|++++|.+++.--..+..+++|++|+|++|. +++.--..+..+    ++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57777777777776555566677777777777774 555444445443    367777777763 766655666777777


Q ss_pred             CEEeCcCCCCc
Q 038320          419 VVLDISGNPWI  429 (467)
Q Consensus       419 ~~L~l~~n~~~  429 (467)
                      +.|++++|+-.
T Consensus       142 ~~L~L~~c~~I  152 (176)
T 3e4g_A          142 KYLFLSDLPGV  152 (176)
T ss_dssp             CEEEEESCTTC
T ss_pred             CEEECCCCCCC
Confidence            77777777533

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=3.5e-07  Score=82.94  Aligned_cols=80  Identities=19%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             CCCCCEEEccCCcCcc--cccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCCh------hhh
Q 038320          367 LENLKILQLWGNLFRG--SIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTE------VHF  437 (467)
Q Consensus       367 l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~------~~~  437 (467)
                      +++|+.|+|++|.+++  .++..+..+++|+.|+|++|++.+. ....+..+ +|++|+|++|++.+.+|.      ..+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence            3444444444444443  2233344455555555555555432 11112222 555555655555554431      124


Q ss_pred             CCCCCCCEEe
Q 038320          438 SKLKNLKELH  447 (467)
Q Consensus       438 ~~l~~L~~l~  447 (467)
                      ..+|+|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            4555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=1.5e-07  Score=79.15  Aligned_cols=82  Identities=11%  Similarity=0.139  Sum_probs=44.9

Q ss_pred             CCCEEEccCCcCcccccccccCCCCCCEEECcCCc-CcccChhhhcCC----CCCCEEeCcCCC-CcccCChhhhCCCCC
Q 038320          369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL-MDGTIPKSLGKL----SHLVVLDISGNP-WIGLVTEVHFSKLKN  442 (467)
Q Consensus       369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~~~l~~  442 (467)
                      .|+.||+++|.+++.--..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. ++..-.. .+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence            46666666666555444455566666666666663 555444444443    356666666654 3332222 3455666


Q ss_pred             CCEEeccCC
Q 038320          443 LKELHIAKY  451 (467)
Q Consensus       443 L~~l~l~~n  451 (467)
                      |+.|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=1.6e-07  Score=85.13  Aligned_cols=79  Identities=29%  Similarity=0.373  Sum_probs=60.1

Q ss_pred             CCCccEEECcCCCCCc--CCCccccCCCCCCEEEccCCcCcccccccccCCC--CCCEEECcCCcCcccCh-------hh
Q 038320          343 NSSLESLDLGQNNLGG--FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLS--SLRELYLHNNLMDGTIP-------KS  411 (467)
Q Consensus       343 ~~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p-------~~  411 (467)
                      +++|+.|+|++|++++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|.+.+.+|       ..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4588899999998887  3456667888999999999998864  2233333  89999999999987554       34


Q ss_pred             hcCCCCCCEEeC
Q 038320          412 LGKLSHLVVLDI  423 (467)
Q Consensus       412 l~~l~~L~~L~l  423 (467)
                      +..+|+|+.||=
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            678899998874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.95  E-value=9.8e-06  Score=69.48  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=18.6

Q ss_pred             ccCCCCCCEEECcCC---cCccc----ChhhhcCCCCCCEEeCcCCC
Q 038320          388 IGNLSSLRELYLHNN---LMDGT----IPKSLGKLSHLVVLDISGNP  427 (467)
Q Consensus       388 l~~~~~L~~L~Ls~n---~l~~~----~p~~l~~l~~L~~L~l~~n~  427 (467)
                      +...+.|++|+|++|   .+.+.    +.+.+..-+.|+.|+++.|.
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            334444555555543   22221    33444445555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.80  E-value=1e-05  Score=69.42  Aligned_cols=108  Identities=15%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             CccEEECcCC-CCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----Chhh
Q 038320          345 SLESLDLGQN-NLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT----IPKS  411 (467)
Q Consensus       345 ~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~  411 (467)
                      .|++|+|++| +|.+.    +...+..-+.|+.|+|++|.+.+.    +.+.+...+.|++|+|++|.|.+.    +.+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4555555553 44421    233445556677777777777643    334455678899999999999765    4566


Q ss_pred             hcCCCCCCEEeCcCC---CCccc----CChhhhCCCCCCCEEeccCCCC
Q 038320          412 LGKLSHLVVLDISGN---PWIGL----VTEVHFSKLKNLKELHIAKYSL  453 (467)
Q Consensus       412 l~~l~~L~~L~l~~n---~~~~~----~~~~~~~~l~~L~~l~l~~n~i  453 (467)
                      +..-+.|++|+|++|   .+...    +.. .+..-+.|+.|+++.|.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            777888999999876   33322    223 566678999999998854

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.44  E-value=0.0065  Score=48.30  Aligned_cols=57  Identities=26%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             cEEECcCCCCC-cCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320          347 ESLDLGQNNLG-GFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       347 ~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      ..++.+++.++ ..+|..+  .++|++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777777776 2445432  246788888888887555556777788888888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.05  E-value=0.016  Score=46.02  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=17.6

Q ss_pred             CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccC
Q 038320          141 KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYY  176 (467)
Q Consensus       141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~  176 (467)
                      +|++|+|++|.++...+..|..+++|++|+|++|++
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555533333344455555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	467
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-15
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-09
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.2 bits (222), Expect = 1e-20
 Identities = 84/371 (22%), Positives = 125/371 (33%), Gaps = 75/371 (20%)

Query: 35  CVQNEKEALLKIKASVTDPSGRLSSWT-GEDCC--KWEGVICDNSTGKVVQLKLRSPEIP 91
           C   +K+ALL+IK  + +P+  LSSW    DCC   W GV+CD  T              
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTY----------- 50

Query: 92  DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS 151
                                    +N LDLS  N                         
Sbjct: 51  ------------------------RVNNLDLSGLNLPKP--------------------- 65

Query: 152 FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWV 211
               IP S  NL  L  L +     ++L       +++L+ L YL +   ++S A   ++
Sbjct: 66  --YPIPSSLANLPYLNFLYIG--GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 212 QATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271
                L +L   +     L    P S+ +  +L+ +    N  + +IP    + SKL   
Sbjct: 122 SQIKTLVTLDFSY---NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331
              + N             +L  +DLS N L G                  +      + 
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS-------VLFGSDKNTQKIHLAKN 231

Query: 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNL 391
               D      + +L  LDL  N + G LP  L QL+ L  L +  N   G IP+  GNL
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL 290

Query: 392 SSLRELYLHNN 402
                    NN
Sbjct: 291 QRFDVSAYANN 301

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 3e-19
 Identities = 67/363 (18%), Positives = 118/363 (32%), Gaps = 51/363 (14%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
           DL  +  L           I   +  L  L  +N S        P    NL+ L  + +N
Sbjct: 42  DLDQVTTLQADRLGI--KSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE 232
               + +            +L    +  +D  K  ++  +      ++S++   +     
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 233 FPPLSVVNFSSLLFLDLSSNDF-------NSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
                    + L  L   +            S    L  ++ L  L  + N +    P  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
              +T+L EL L+ N L        L SL NL DLDL+ N +                + 
Sbjct: 217 I--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLA-------PLSGLTK 264

Query: 346 LESLDLGQNNLGGFLP--------------------NSLGQLENLKILQLWGNLFRGSIP 385
           L  L LG N +    P                    + +  L+NL  L L+ N      P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 386 ESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKE 445
             + +L+ L+ L+  NN +  +   SL  L+++  L    N    +      + L  + +
Sbjct: 325 --VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQ---ISDLTPLANLTRITQ 377

Query: 446 LHI 448
           L +
Sbjct: 378 LGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 2e-15
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 20/194 (10%)

Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL 268
           S +    +L +L EL L    L +   L+  + ++L  LDL++N  ++  P  L  ++KL
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKL 265

Query: 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
             L L AN +    P   A +T+L  L+L+EN L       +L    NL  L L  N++ 
Sbjct: 266 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNIS 320

Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI 388
                    +S    + L+ L    N +     +SL  L N+  L    N      P  +
Sbjct: 321 DIS-----PVSSL--TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 389 GNLSSLRELYLHNN 402
            NL+ + +L L++ 
Sbjct: 370 ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 21/186 (11%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF 174
            +L+ L L+ N  +       L SL  L  L+L+    +   P     L+ L  L L   
Sbjct: 219 TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP 234
             S++                  L  ++L++     +   + L +L+ L L    + +  
Sbjct: 274 QISNISPLA----------GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
           P+S  + + L  L  ++N    S    L N++ +  L    N +    P   AN+T + +
Sbjct: 324 PVS--SLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 295 LDLSEN 300
           L L++ 
Sbjct: 378 LGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 8e-17
 Identities = 55/282 (19%), Positives = 92/282 (32%), Gaps = 28/282 (9%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF 174
                LDL  N            +L+ L  L L     +   P +F  L  L+ L L+  
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 175 YYSSLESD------------------DVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM 216
               L                          + L+ +  + L    L  +G     A   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENGAFQG 148

Query: 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN 276
           +  LS + +    +   P        SL  L L  N         L  ++ LA L LS N
Sbjct: 149 MKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 277 NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG-EIIEFV 335
           ++      + AN   LREL L+ N L+  ++P  L     +  + L  N++      +F 
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 336 DRLSKCANSSLESLDLGQNNLGGF--LPNSLGQLENLKILQL 375
                   +S   + L  N +  +   P++   +     +QL
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 2e-15
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 10/196 (5%)

Query: 242 SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS 301
                LDL +N           N+  L  L L  N +    P AFA +  L  L LS+N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 302 LIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP 361
           L   ++P+ +     L +L +  N++        + L++     +  L        G   
Sbjct: 91  L--KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM---IVVELGTNPLKSSGIEN 143

Query: 362 NSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVL 421
            +   ++ L  +++       +IP+ +    SL EL+L  N +      SL  L++L  L
Sbjct: 144 GAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 422 DISGNPWIGLVTEVHF 437
            +S N    +      
Sbjct: 201 GLSFNSISAVDNGSLA 216

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 52/308 (16%), Positives = 85/308 (27%), Gaps = 36/308 (11%)

Query: 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGV 201
              L+L            F NL +L  L L     S +        + L  L+ L L   
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---AFAPLVKLERLYLSKN 89

Query: 202 DLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQW 261
            L +      +    L      H            + +N   ++ L  +    +      
Sbjct: 90  QLKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
              + KL+++ ++  N+   IP       SL EL L  N  I       L  L NL  L 
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLG 201

Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
           LS N +                  L  L L  N L    P  L   + ++++ L  N   
Sbjct: 202 LSFNSISAVDNGS-----LANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNIS 255

Query: 382 GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW-IGLVTEVHFSKL 440
                                      P    K +    + +  NP     +    F  +
Sbjct: 256 AIGSNDFCP------------------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

Query: 441 KNLKELHI 448
                + +
Sbjct: 298 YVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 8e-12
 Identities = 48/262 (18%), Positives = 83/262 (31%), Gaps = 36/262 (13%)

Query: 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273
            ++ P  + L L    + E       N  +L  L L +N  +   P     + KL  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSL----------------------IGGQIPKDL 311
           S N L+         +  LR  +     +                        G      
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 312 GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK 371
             +  L  + ++  ++          + +    SL  L L  N +      SL  L NL 
Sbjct: 147 QGMKKLSYIRIADTNI--------TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN----- 426
            L L  N        S+ N   LREL+L+NN +   +P  L    ++ V+ +  N     
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 427 PWIGLVTEVHFSKLKNLKELHI 448
                    + +K  +   + +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSL 279

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 4e-15
 Identities = 47/211 (22%), Positives = 69/211 (32%), Gaps = 19/211 (9%)

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293
           P   V   +S L ++    +  +++P  L        L LS N L           T L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 294 ELDLSENSLIGGQIPKDLGSLCNLW---------------DLDLSGNDLDGEIIEFVDRL 338
           +L+L    L   Q+   L  L  L                   L+  D+    +  +   
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY 398
           +      L+ L L  N L    P  L     L+ L L  N         +  L +L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429
           L  N +  TIPK       L    + GNPW+
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 44/209 (21%), Positives = 66/209 (31%), Gaps = 13/209 (6%)

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179
           L+++ +    + +P  L        L+LS          +    + L  L+L        
Sbjct: 13  LEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL-----DRA 65

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
           E   ++    L  L  L+L    L            +        +    L   P  ++ 
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL----DVSFNRLTSLPLGALR 121

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
               L  L L  N+  +  P  L    KL  L L+ NNL          + +L  L L E
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
           NSL    IPK       L    L GN   
Sbjct: 182 NSLY--TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 47/189 (24%), Positives = 61/189 (32%), Gaps = 11/189 (5%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF 174
           K    L LS N          L    +L  LNL  A          G L  L  LDL+  
Sbjct: 31  KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHN 87

Query: 175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP 234
              SL                L +  V  ++  S  + A   L  L EL+L    L   P
Sbjct: 88  QLQSLPLLGQTL-------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
           P  +     L  L L++N+        L  +  L  L L  N+L   IP  F     L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 295 LDLSENSLI 303
             L  N  +
Sbjct: 200 AFLHGNPWL 208

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 1e-13
 Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 14/273 (5%)

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179
           +  S        +P  + +    + + L G   +     SF    +L IL L++   + +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
           ++     L+         L+  D ++  S      + L  L  LHL  CGL E  P    
Sbjct: 72  DAAAFTGLA-----LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
             ++L +L L  N   +       ++  L HL L  N +      AF  + SL  L L +
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF 359
           N +     P     L  L  L L  N+     +  +   +     +L+ L L  N     
Sbjct: 187 NRVAH-VHPHAFRDLGRLMTLYLFANN-----LSALPTEALAPLRALQYLRLNDNPWVC- 239

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLS 392
              +      L+  +   +    S+P+ +    
Sbjct: 240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 9e-12
 Identities = 46/214 (21%), Positives = 70/214 (32%), Gaps = 29/214 (13%)

Query: 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300
            ++   + L  N  +            L  L L +N L      AF  +  L +LDLS+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360
           + +    P     L  L  L L         ++ +        ++L+ L L  N L    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCG-----LQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLS---- 416
            ++   L NL  L L GN        +   L SL  L LH N +    P +   L     
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 417 --------------------HLVVLDISGNPWIG 430
                                L  L ++ NPW+ 
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 8e-11
 Identities = 53/305 (17%), Positives = 102/305 (33%), Gaps = 41/305 (13%)

Query: 74  DNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIP 133
            + TG+++   + +   P SF D         +          + ++DLS +    S + 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMD---------QPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL 193
             L    KL+ L+L G   +  I  +    S+L  L+L+     S  +     LS  S L
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRL 123

Query: 194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND 253
             LNL            V   ++  ++++L+L                         +  
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR--------------------KNLQ 163

Query: 254 FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGS 313
            +          + +      +  L+ +    F  +  L+ L LS    I  +   +LG 
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL 373
           +  L  L + G   DG +             +L  L +  ++       ++G  +N +I 
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLK--------EALPHLQINCSHFTTIARPTIGNKKNQEI- 274

Query: 374 QLWGN 378
             WG 
Sbjct: 275 --WGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 30/230 (13%)

Query: 247 LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306
           LDL+  + +  +   LL+   +       + +   + + F+    ++ +DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK--------CANSSLESLDLGQNNLGG 358
           +   L     L +L L G  L   I+  + + S         C+  S  +L    ++   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 359 FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL--------------------Y 398
               +L    +     +   +   S   +  NLS  R+                      
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
             + ++     +   +L++L  L +S    I   T +   ++  LK L +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 5/198 (2%)

Query: 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDLSANNLQGNIPDAFANMTSL 292
           P     +   +  +DLS++    S    +L   SKL +L L    L   I +  A  ++L
Sbjct: 38  PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

Query: 293 RELDLSEN-SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351
             L+LS         +   L S   L +L+LS      E    V         +  +L  
Sbjct: 98  VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 157

Query: 352 GQNNLGGFLPNSLGQLENLKILQLWGN--LFRGSIPESIGNLSSLRELYLHN-NLMDGTI 408
            + NL     ++L +     +     +  + +    +    L+ L+ L L     +    
Sbjct: 158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217

Query: 409 PKSLGKLSHLVVLDISGN 426
              LG++  L  L + G 
Sbjct: 218 LLELGEIPTLKTLQVFGI 235

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 55.3 bits (131), Expect = 6e-09
 Identities = 55/327 (16%), Positives = 105/327 (32%), Gaps = 19/327 (5%)

Query: 97  NGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRG---SRIPNFLGSLEKLRYLNLSG---A 150
           +  T + E  +   +L+   +  + LS N         +   + S + L     S     
Sbjct: 13  DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 151 SFAGNIPPSFGNLSSLQILDLN---TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAG 207
                IP +   L    +            +      +        ++  LE + L   G
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 208 SSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267
                   +  +L EL +        P  S++   + L          +     LL+  K
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192

Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG---GQIPKDLGSLCNLWDLDLSG 324
           +    +    ++  + +  A    L+ LDL +N+        +   L S  NL +L L+ 
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 325 NDLDGEI-IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL-----GQLENLKILQLWGN 378
             L        VD  SK  N  L++L L  N +      +L      ++ +L  L+L GN
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 379 LFRGSIPESIGNLSSLRELYLHNNLMD 405
            F     + +  +  +        L +
Sbjct: 313 RF-SEEDDVVDEIREVFSTRGRGELDE 338

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 27/344 (7%)

Query: 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF----AGNIPPSFGNLSSLQ 167
           ++ K L    ++  + +   +   L   + ++ + LSG +     A  +  +  +   L+
Sbjct: 5   IEGKSLKLDAITTEDEKS--VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
           I + +  +   ++ +  E L  L            L     S               L  
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKC---PKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
               E   L            ++      ++ +   N   L  +    N L+      +A
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347
                    L    ++   I  +      L  L         ++ +        +  ++ 
Sbjct: 180 KTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238

Query: 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT 407
                     G     L       ++  +  L              L+ L L  N ++  
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKL----------ENIGLQTLRLQYNEIELD 288

Query: 408 IPKSL-----GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446
             ++L      K+  L+ L+++GN +     +    +++ +   
Sbjct: 289 AVRTLKTVIDEKMPDLLFLELNGNRFSEE--DDVVDEIREVFST 330

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 286 FANMTSLRELDLSENSL---IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342
               + LR L L++  +       +   L +  +L +LDLS N L    I  +    +  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLE----NLKIL 373
              LE L L        + + L  LE    +L+++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 268 LAHLDLSANNLQGN-IPDAFANMTSLRELDLSENSL---IGGQIPKDLGSLCNLWDLDLS 323
           +  LD+    L      +    +   + + L +  L       I   L     L +L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNN 355
            N+L    +  V +  +  +  ++ L L    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 3e-07
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 254 FNSSIPQWLLNISKLAHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQIPK 309
                       S L  L L+  ++  +    +        SLRELDLS N  +G     
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGIL 415

Query: 310 DLGS-----LCNLWDLDLSGNDLDGEIIEFVDRLSK 340
            L        C L  L L       E+ + +  L K
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 343 NSSLESLDLGQNNLGGF-LPNSLGQLENLKILQLWGNLFRG----SIPESIGNLSSLREL 397
           +  ++SLD+    L        L  L+  ++++L            I  ++    +L EL
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 398 YLHNNLMDGTIPKSLGKL-----SHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452
            L +N +       + +        +  L +      G    V  S L+ L  L     S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
            ++ LD+    L   +  + L  L     + L    L     + +    +  N +L  L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELN 61

Query: 351 LGQNNLGGFLPNSLGQL-----ENLKILQLWGN 378
           L  N LG    + + Q        ++ L L   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 229 GLFEFPPLSVVNFSSLLFLDLSSNDFN----SSIPQWLLNISKLAHLDLSANNLQGNIPD 284
           G+ E         S L  L L+  D +    SS+   LL    L  LDLS N L      
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 285 AFA-----NMTSLRELDLSENSLIGGQIPKDLGSL 314
                       L +L L +      ++   L +L
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIY-WSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 6e-06
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF----AGNIPPSFGNLSSLQILDLN 172
           +  LD+       +R    L  L++ + + L           +I  +     +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSW 210
               + L    V  + +        ++ + L     + 
Sbjct: 64  ---SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 343 NSSLESLDLGQNNLGG----FLPNSLGQLENLKILQLWGNLFRGSIPESIG-----NLSS 393
            S L  L L   ++       L  +L    +L+ L L  N    +    +          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 394 LRELYLHNNLMDGTIPKSLGKL 415
           L +L L++      +   L  L
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 27/112 (24%)

Query: 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSS 251
            +Q L+++  +LS A   W +   +L     + L  CGL                    +
Sbjct: 3   DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGL--------------------T 40

Query: 252 NDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA-----NMTSLRELDLS 298
                 I   L     LA L+L +N L                  +++L L 
Sbjct: 41  EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 8e-04
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 369 NLKILQLWGNLFRG----SIPESIGNLSSLRELYLHNNLMDGTIPKSLGK-----LSHLV 419
            L++L L           S+  ++    SLREL L NN +       L +        L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 420 VLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L +    W   + +   +  K+   L +
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 17/217 (7%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
             ++ + +    ++   ++ Q   ++  +  L      +     +    + +L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 300 NSLIGGQIPKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG 358
           N +      K+L  +       +   N      ++ +  L   +    +   L   +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 359 FLPNSLGQLENLKILQLW-------GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS 411
            L   L Q+ N+  L              + S    + NLS L  L   +N +    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
           L  L +L+ + +  N    +      +   NL  + +
Sbjct: 191 LASLPNLIEVHLKNNQ---ISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 18/218 (8%)

Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN- 172
           L +   +    +N            L+ +  L+  G             L++L  L+L  
Sbjct: 18  LANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 173 -----TFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
                     +L       LS         + G+   K           +  L+ L    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 228 CGLFEFPPLSVVNF--SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285
               +   ++ ++          LS  +   S    L N+SKL  L    N +    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323
            A++ +L E+ L  N +        L +  NL+ + L+
Sbjct: 191 LASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 32/213 (15%), Positives = 60/213 (28%), Gaps = 14/213 (6%)

Query: 197 NLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS 256
           N   +   K+  +       L  ++ L     G+     +     ++L+ L+L  N    
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITD 77

Query: 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCN 316
             P   L       L  +       I    +  T         +      +        +
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKC--------ANSSLESLDLGQNNLGGFLPNSLGQLE 368
           L  +           ++++   +            S L +L    N +    P  L  L 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401
           NL  + L  N      P  + N S+L  + L N
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 15/194 (7%)

Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
           DL  +  L         + I   +  L  L  L L         P       +   L  N
Sbjct: 39  DLDGITTLSAFGTGV--TTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 173 TFYYSSLESDDVEWLSRLSSLQYLN--------LEGVDLSKAGSSWVQATNMLPSLSELH 224
                S  +      +   +   +              L    +     + +    +  +
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 225 LPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPD 284
           L            + N S L  L    N  +   P  L ++  L  + L  N +    P 
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP- 212

Query: 285 AFANMTSLRELDLS 298
             AN ++L  + L+
Sbjct: 213 -LANTSNLFIVTLT 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329
                 N     I        SL EL++S N LI  ++P        L  L  S N L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELP---ALPPRLERLIASFNHL-A 317

Query: 330 EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372
           E+ E           +L+ L +  N L    P+    +E+L++
Sbjct: 318 EVPELP--------QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL 268
                 ++ PSL EL++    L E P L       L  L  S N   + +P+   N   L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHL-AEVPELPQN---L 326

Query: 269 AHLDLSANNLQGNIPDAFANMTSLR 293
             L +  N L+   PD   ++  LR
Sbjct: 327 KQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
               SLE L++  N L   LP    +LE L       N     +PE   NL   ++L++ 
Sbjct: 281 DLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHL-AEVPELPQNL---KQLHVE 332

Query: 401 NNLMDGTIPKSLGKLSHL 418
            N +    P     +  L
Sbjct: 333 YNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 51/332 (15%), Positives = 91/332 (27%), Gaps = 21/332 (6%)

Query: 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF 174
           +  + L+L+      S +P     LE    L  S  S    +P    +L SL + + N  
Sbjct: 38  RQAHELELNNLGL--SSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP 234
             S L            S   L       + +    +   N          P+       
Sbjct: 92  ALSDLPP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 235 PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294
              +     L  L   +  +  +     L    L+   + A N          N+  L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRL--SKCANSSLESLDLG 352
           +    N L             N+ D  L+      + + F+D         S L      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL 412
            N     + +      +L+ L +  N     +P     L     L    N +   +P+  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPELP 323

Query: 413 GKLSHLVVLDISGNPWIGLVTEVHFSKLKNLK 444
             L  L    +  NP            +++L+
Sbjct: 324 QNLKQL---HVEYNPLREFPDI--PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 335 VDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSL 394
           V RL  C +     L+L    L   LP       +L+ L    N     +PE   +L SL
Sbjct: 29  VSRLRDCLDRQAHELELNNLGLSS-LPELPP---HLESLVASCNSLT-ELPELPQSLKSL 83

Query: 395 RELYLH 400
                +
Sbjct: 84  LVDNNN 89

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
           L L+  DL   ++  +++L       +  LDL  N L    P +L  L  L++LQ   N 
Sbjct: 3   LHLAHKDL--TVLCHLEQLL-----LVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 54

Query: 380 FRGSIPESIGNLSSLRELYL-HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVH-- 436
                 + + NL  L+EL L +N L      + L     LV+L++ GN            
Sbjct: 55  LE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 437 FSKLKNLKEL 446
              L ++  +
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL-SANNLQGN 281
           LHL    L     L       +  LDLS N   +  P     ++ L  L++  A++    
Sbjct: 3   LHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56

Query: 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE 330
             D  AN+  L+EL L  N L      + L S   L  L+L GN L  E
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 24/125 (19%)

Query: 119 YLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS 178
            L L+  +   + + + L  L  + +L+LS        PP+   L  L++L  +     +
Sbjct: 2   VLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 57

Query: 179 LES--------------------DDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
           ++                       ++ L     L  LNL+G  L +      +   MLP
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 219 SLSEL 223
           S+S +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352
           R L L+   L    +   L  L  +  LDLS N L                ++L  L++ 
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPAL---------AALRCLEVL 48

Query: 353 -QNNLGGFLPNSLGQLENLKILQLWGN-LFRGSIPESIGNLSSLRELYLHNNLM---DGT 407
             ++      + +  L  L+ L L  N L + +  + + +   L  L L  N +   +G 
Sbjct: 49  QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 408 IPKSLGKLSHLVVL 421
             +    L  +  +
Sbjct: 109 QERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTI 408
           L L   +L       L QL  +  L L  N  R  +P ++  L  L  L   +N ++   
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE--N 57

Query: 409 PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
              +  L  L  L +  N                L  L++ 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 44/209 (21%), Positives = 76/209 (36%), Gaps = 23/209 (11%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
            F+  +  +L       ++ Q  LN   +  +  + ++++         + ++ +L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF 359
           N L      K L +L NL  L L  N +         +  K  +           + G  
Sbjct: 78  NKLTD---IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS---------LEHNGIS 125

Query: 360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419
             N L  L  L+ L L  N         +  L+ L  L L +N +   +P  L  L+ L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 420 VLDISGNPWIGLVTEVHFSKLKNLKELHI 448
            L +S N    L      + LKNL  L +
Sbjct: 182 NLYLSKNHISDL---RALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 23/199 (11%)

Query: 138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN 197
           +  +    NL   S    +  +   L+S+  +  N     S++      +  L ++  L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLF 74

Query: 198 LEGVDLS------------KAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLL 245
           L G  L+                   +  ++        L +  L       +     L 
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 246 FLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGG 305
            L+      N      +L+           +N   +I    A +T L+ L LS+N +   
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI--- 190

Query: 306 QIPKDLGSLCNLWDLDLSG 324
              + L  L NL  L+L  
Sbjct: 191 SDLRALAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 6e-05
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 6/143 (4%)

Query: 108 SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQ 167
           +    +      LDL         I N   +L++   ++ S           F  L  L+
Sbjct: 11  AAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLK 66

Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
            L +N      +     + L  L+ L   N   V+L          +     +     P 
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL--RNPV 124

Query: 228 CGLFEFPPLSVVNFSSLLFLDLS 250
                +    +     +  LD  
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 6/147 (4%)

Query: 251 SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD 310
           + +      Q   N  +   LDL    +   I +  A +     +D S+N +   +    
Sbjct: 4   TAELIEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---RKLDG 58

Query: 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENL 370
              L  L  L ++ N +          L       L +  L +         SL  L  L
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYL 117

Query: 371 KILQLWGNLFRGSIPESIGNLSSLREL 397
            IL+      +      I  +  +R L
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 13/146 (8%)

Query: 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217
             + N    + LDL  +    +E+      + L     +     D S      +    +L
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIEN----LGATLDQFDAI-----DFSDNEIRKLDGFPLL 62

Query: 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS----SIPQWLLNISKLAHLDL 273
             L  L +    +             L  L L++N             L +++ L  L  
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 274 SANNLQGNIPDAFANMTSLRELDLSE 299
              N +         +  +R LD  +
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLDFQK 148

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%)

Query: 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI 282
           L L   G+ E    +             +N+            S    LD+S   +    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 283 PDAFANMTSLRELDLS 298
                N+  LR     
Sbjct: 218 SYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 7/48 (14%), Positives = 11/48 (22%)

Query: 125 NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLN 172
           NN       +          L++S             NL  L+     
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350
               +D +   L   +IP+D+    +  +L L+ N+L     + +          L  L+
Sbjct: 9   EGTTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPH----LVKLE 60

Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK 410
           L +N L G  PN+     +++ LQL  N  +    +    L  L+ L L++N +   +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 411 SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447
           S   L+ L  L+++ NP+        F++    K L+
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN 157

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 26/190 (13%), Positives = 66/190 (34%), Gaps = 14/190 (7%)

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299
             +  +   L   +   ++ Q   ++ ++  L      ++    D    + +L +++ S 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71

Query: 300 NSLIGGQ-IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG 358
           N L     +      +  L + +   +      +  +  L+   N   +   L       
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 359 FLPNSLGQLENLKILQLWGNLFRG-------SIPESIGNLSSLRELYLHNNLMDGTIPKS 411
            L  S   + ++  L    +L +        +  + + NL++L  L + +N +       
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189

Query: 412 LGKLSHLVVL 421
           L KL++L  L
Sbjct: 190 LAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 19/182 (10%)

Query: 129 GSRIPNFLGSLEK---LRYLNLSGASFAGNIPP------SFGNLSSLQILDLNTFYYSSL 179
            + I + +   E+   +           G IPP      +   L + + L L+T     +
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
            S     LS + +L+ L+L    + K  +    A  +       +  A        +++ 
Sbjct: 64  SS-----LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR 118

Query: 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL-----SANNLQGNIPDAFANMTSLRE 294
                     +  + +       L    LA   L       N       +    + +L++
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 295 LD 296
           LD
Sbjct: 179 LD 180

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 4/155 (2%)

Query: 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179
           ++L        ++   L +L+  ++L LS  +       S   + +L+IL L       +
Sbjct: 28  VELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIKKI 85

Query: 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVV 239
           E+ D    +        N             ++   M  +          L     L  +
Sbjct: 86  ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145

Query: 240 NFSS--LLFLDLSSNDFNSSIPQWLLNISKLAHLD 272
             +   L      +N  +    + +  +  L  LD
Sbjct: 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	467
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.63

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.6e-40  Score=311.39  Aligned_cols=291  Identities=34%  Similarity=0.527  Sum_probs=176.6

Q ss_pred             ccHhhHHHHHHhHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CCEEEEEcCCCCCCCCcCCCCccccccc--cc
Q 038320           35 CVQNEKEALLKIKASVTDPSGRLSSW-TGEDCCK--WEGVICDNST--GKVVQLKLRSPEIPDSFTDNGTTYQLEG--EI  107 (467)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~l~~--~~  107 (467)
                      |.++|++||++||+.+.+|. .+.+| .+.|||.  |+||+|+...  +||+++++++             +.++|  .+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~-------------~~l~g~~~l   68 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------LNLPKPYPI   68 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-------------CCCSSCEEC
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCC-------------CCCCCCCCC
Confidence            89999999999999998875 57899 5789994  9999998644  4899999998             66665  45


Q ss_pred             CccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhh
Q 038320          108 SPSVLDLKHLNYLDLSL-NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEW  186 (467)
Q Consensus       108 ~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~  186 (467)
                      |+.++++++|++|+|++ |.++|. +|..++++++|++|++++|++.+..+..+..+++|+++++++             
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~-------------  134 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-------------  134 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS-------------
T ss_pred             ChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccc-------------
Confidence            66677777777777765 556554 666666666666666666666554444444444444444443             


Q ss_pred             cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320          187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS  266 (467)
Q Consensus       187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  266 (467)
                                                               |.+.+.+|..+.+++.++.+++++|.+.+.+|..+..+.
T Consensus       135 -----------------------------------------N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~  173 (313)
T d1ogqa_         135 -----------------------------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             -----------------------------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             -----------------------------------------ccccccCchhhccCcccceeecccccccccccccccccc
Confidence                                                     333344444555666666666666666666666666665


Q ss_pred             CC-CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCC
Q 038320          267 KL-AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS  345 (467)
Q Consensus       267 ~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~  345 (467)
                      .+ +.+++++|++++..+..+..+..+ .+++.++.. .+.++..+..+++++.+++++|.+.+.++. +...     ++
T Consensus       174 ~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~~~~-----~~  245 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS-----KN  245 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC-----TT
T ss_pred             ccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccc-cccc-----cc
Confidence            54 667777777776666666555433 566666655 555565555666666666665555543321 1111     14


Q ss_pred             ccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320          346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL  403 (467)
Q Consensus       346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~  403 (467)
                      |+.|++++|+++|.+|..++++++|++|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            44444444444444444444444444444444444444442 2334444444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=5.6e-28  Score=233.73  Aligned_cols=193  Identities=25%  Similarity=0.398  Sum_probs=159.2

Q ss_pred             ccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCC
Q 038320          236 LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC  315 (467)
Q Consensus       236 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  315 (467)
                      .....+++++.+++++|.+++..|  ....++|+.|++++|.+++.  ..+..+++|+.+++++|.+ .+..  .+..++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l-~~~~--~~~~~~  263 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI-SNLA--PLSGLT  263 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CCCG--GGTTCT
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCcc-CCCC--cccccc
Confidence            345678899999999999887654  45678999999999998843  3578899999999999998 4432  477899


Q ss_pred             CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCC
Q 038320          316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR  395 (467)
Q Consensus       316 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~  395 (467)
                      +|++|+++++.+++..+  +...     +.++.+.+..|.+++.  ..+..+++++.|++++|.+++..  .+..+++|+
T Consensus       264 ~L~~L~l~~~~l~~~~~--~~~~-----~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~  332 (384)
T d2omza2         264 KLTELKLGANQISNISP--LAGL-----TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ  332 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTC-----TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCC
T ss_pred             cCCEeeccCcccCCCCc--cccc-----cccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCC
Confidence            99999999999886433  3333     3799999999999863  45788999999999999998643  378899999


Q ss_pred             EEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       396 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      +|++++|++++ ++ .+..+++|++|++++|++++..|   +.++++|+.|+|++|
T Consensus       333 ~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         333 RLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCCE
T ss_pred             EEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCCCC
Confidence            99999999984 44 68999999999999999987653   688999999999998

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=6.4e-30  Score=240.66  Aligned_cols=249  Identities=27%  Similarity=0.396  Sum_probs=217.5

Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCC-CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA-CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      +++.|+|+++.+.+... .+..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~-lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCC-CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            45666666666665321 145777888888888886 6788888888999999999999999999888888889999999


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC-CEEeccCCcCCCchhhHHHhhhcccCCCccEE
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL-WDLDLSGNDLDGEIIEFVDRLSKCANSSLESL  349 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L  349 (467)
                      +++++|.+.+.+|..+.++++++.+++++|.+ .+.+|..+..+..+ +.+++++|++++..+..+...      ....+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l-~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l------~~~~l  202 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------NLAFV  202 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------CCSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccc-cccccccccccccccccccccccccccccccccccc------ccccc
Confidence            99999999989999999999999999999998 77888888888776 889999999998888777665      46689


Q ss_pred             ECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCc
Q 038320          350 DLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI  429 (467)
Q Consensus       350 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  429 (467)
                      +++.+...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|+++|.+|..+.++++|++|+|++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999999999999997765 5888999999999999999999999999999999999999999


Q ss_pred             ccCChhhhCCCCCCCEEeccCC
Q 038320          430 GLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       430 ~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      |.+|.  ++++++|+.+++++|
T Consensus       282 g~iP~--~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         282 GEIPQ--GGNLQRFDVSAYANN  301 (313)
T ss_dssp             EECCC--STTGGGSCGGGTCSS
T ss_pred             ccCCC--cccCCCCCHHHhCCC
Confidence            99996  578999999999999

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.6e-26  Score=221.84  Aligned_cols=302  Identities=25%  Similarity=0.351  Sum_probs=232.8

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      ..++.+++++             +.++. + +.+..+++|++|++++|++++  ++ .++++++|++|++++|.+.+ ++
T Consensus        44 ~~l~~L~l~~-------------~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~--l~-~l~~L~~L~~L~L~~n~i~~-i~  104 (384)
T d2omza2          44 DQVTTLQADR-------------LGIKS-I-DGVEYLNNLTQINFSNNQLTD--IT-PLKNLTKLVDILMNNNQIAD-IT  104 (384)
T ss_dssp             TTCCEEECCS-------------SCCCC-C-TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             CCCCEEECCC-------------CCCCC-c-cccccCCCCCEEeCcCCcCCC--Cc-cccCCccccccccccccccc-cc
Confidence            4688899988             44443 2 347789999999999999985  44 38899999999999999984 44


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCCh--------------------------------------hhcCCCCCCCEEECC
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDV--------------------------------------EWLSRLSSLQYLNLE  199 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~--------------------------------------~~l~~l~~L~~L~L~  199 (467)
                      + ++++++|+.|+++++.++.++....                                      ..+............
T Consensus       105 ~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (384)
T d2omza2         105 P-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  183 (384)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            3 8899999999999988765433211                                      001112222222222


Q ss_pred             CcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccc
Q 038320          200 GVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQ  279 (467)
Q Consensus       200 ~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  279 (467)
                      .+....     ......+++++.+++++|.+.+..+  ...+++|++|++++|.++. + ..+..+++|+.+++++|.++
T Consensus       184 ~~~~~~-----~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~  254 (384)
T d2omza2         184 SNKVSD-----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS  254 (384)
T ss_dssp             SSCCCC-----CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             cccccc-----ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccC
Confidence            222221     2245667899999999999988755  4567899999999999875 3 35788999999999999998


Q ss_pred             cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC
Q 038320          280 GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF  359 (467)
Q Consensus       280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~  359 (467)
                      +..  .+..+++|++|+++++.+ .+ ++ .+..++.++.+++..|.+++.  ..+....     +++.|++++|++++.
T Consensus       255 ~~~--~~~~~~~L~~L~l~~~~l-~~-~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~-----~l~~L~ls~n~l~~l  322 (384)
T d2omza2         255 NLA--PLSGLTKLTELKLGANQI-SN-IS-PLAGLTALTNLELNENQLEDI--SPISNLK-----NLTYLTLYFNNISDI  322 (384)
T ss_dssp             CCG--GGTTCTTCSEEECCSSCC-CC-CG-GGTTCTTCSEEECCSSCCSCC--GGGGGCT-----TCSEEECCSSCCSCC
T ss_pred             CCC--cccccccCCEeeccCccc-CC-CC-ccccccccccccccccccccc--cccchhc-----ccCeEECCCCCCCCC
Confidence            654  378899999999999998 33 32 477889999999999998863  2334443     899999999999975


Q ss_pred             CCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320          360 LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       360 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  426 (467)
                      .  .+..+++|++|++++|.+++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       323 ~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         323 S--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             c--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            3  47889999999999999984 44 58899999999999999996654  889999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.3e-25  Score=210.20  Aligned_cols=267  Identities=20%  Similarity=0.243  Sum_probs=165.0

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320          115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ  194 (467)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~  194 (467)
                      +++++|+|++|+++.. .+..|.++++|++|++++|.+....|..|.++++|++|++++|+++.++...           
T Consensus        31 ~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~-----------   98 (305)
T d1xkua_          31 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-----------   98 (305)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-----------
T ss_pred             CCCCEEECcCCcCCCc-ChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch-----------
Confidence            5788889988888743 3346888888888888888888666777888888888888888776655431           


Q ss_pred             EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEecc
Q 038320          195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS  274 (467)
Q Consensus       195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  274 (467)
                                            .+.++.|++..|.+.+..+..+.....+..++...+...                   
T Consensus        99 ----------------------~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~-------------------  137 (305)
T d1xkua_          99 ----------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-------------------  137 (305)
T ss_dssp             ----------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC-------------------
T ss_pred             ----------------------hhhhhhhhccccchhhhhhhhhhcccccccccccccccc-------------------
Confidence                                  123344444444443333333333344444444433221                   


Q ss_pred             CCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC
Q 038320          275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN  354 (467)
Q Consensus       275 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  354 (467)
                         .....+..+..+++|+.+++++|.+  ..++..  .+++|+.|++++|...+..+..+....     .+++|++++|
T Consensus       138 ---~~~~~~~~~~~l~~L~~l~l~~n~l--~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~l~~L~~s~n  205 (305)
T d1xkua_         138 ---SSGIENGAFQGMKKLSYIRIADTNI--TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLN-----NLAKLGLSFN  205 (305)
T ss_dssp             ---GGGBCTTGGGGCTTCCEEECCSSCC--CSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCT-----TCCEEECCSS
T ss_pred             ---ccCCCccccccccccCccccccCCc--cccCcc--cCCccCEEECCCCcCCCCChhHhhccc-----cccccccccc
Confidence               1112233445556666666666655  223322  245666667766666665555554444     6777777777


Q ss_pred             CCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh------hcCCCCCCEEeCcCCCC
Q 038320          355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS------LGKLSHLVVLDISGNPW  428 (467)
Q Consensus       355 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~------l~~l~~L~~L~l~~n~~  428 (467)
                      .+++..+..+..+++|++|++++|.++ .+|..+..+++|++|+|++|+++......      ....++|+.|++++|++
T Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            777666667777777777777777776 56667777778888888877776432222      33567788888888887


Q ss_pred             c-ccCChhhhCCCCCCCEEe
Q 038320          429 I-GLVTEVHFSKLKNLKELH  447 (467)
Q Consensus       429 ~-~~~~~~~~~~l~~L~~l~  447 (467)
                      . ..++...|.-+.....+.
T Consensus       285 ~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         285 QYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             CGGGSCGGGGTTCCCGGGEE
T ss_pred             ccCcCCHhHhcccccCcccc
Confidence            4 455554666555544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.8e-24  Score=198.77  Aligned_cols=267  Identities=19%  Similarity=0.225  Sum_probs=203.6

Q ss_pred             CCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCc
Q 038320          166 LQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLL  245 (467)
Q Consensus       166 L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  245 (467)
                      +++++.++..++++|..    +.  +++++|++++|.++...+   ..+.++++|++|++++|.+....+..|.++++|+
T Consensus        12 ~~~~~C~~~~L~~lP~~----l~--~~l~~L~Ls~N~i~~l~~---~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKD----LP--PDTALLDLQNNKITEIKD---GDFKNLKNLHTLILINNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             TTEEECTTSCCCSCCCS----CC--TTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEecCCCCCccCCC----CC--CCCCEEECcCCcCCCcCh---hHhhccccccccccccccccccchhhhhCCCccC
Confidence            34444444444444443    21  345555555555554432   1456677777788888887777777788888888


Q ss_pred             EEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCC-CCCCcccccCCCCCCEEeccC
Q 038320          246 FLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLI-GGQIPKDLGSLCNLWDLDLSG  324 (467)
Q Consensus       246 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~l~~  324 (467)
                      +|++++|+++ .+|..+  ...+..|++.+|.+.+..+..+.....+..++...+... ....+..+..+++|+.+++++
T Consensus        83 ~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          83 RLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             EEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             EecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            8888888887 455432  467889999999988776777788888999998887652 123345678889999999999


Q ss_pred             CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      |.+.... ..       .+++|+.|++++|.+++..+..+..++.+++|++++|.+++..+..+.++++|++|+|++|++
T Consensus       160 n~l~~l~-~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         160 TNITTIP-QG-------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             SCCCSCC-SS-------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CCccccC-cc-------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc
Confidence            9887432 11       234899999999999988899999999999999999999988888899999999999999999


Q ss_pred             cccChhhhcCCCCCCEEeCcCCCCcccCChhh------hCCCCCCCEEeccCCCCC
Q 038320          405 DGTIPKSLGKLSHLVVLDISGNPWIGLVTEVH------FSKLKNLKELHIAKYSLA  454 (467)
Q Consensus       405 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~------~~~l~~L~~l~l~~n~i~  454 (467)
                      + .+|..+..+++|++|++++|+++.. +...      +...++|+.|+|++|+++
T Consensus       232 ~-~lp~~l~~l~~L~~L~Ls~N~i~~i-~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         232 V-KVPGGLADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             c-ccccccccccCCCEEECCCCccCcc-ChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8 6788999999999999999998753 3223      346788999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-23  Score=191.30  Aligned_cols=228  Identities=23%  Similarity=0.238  Sum_probs=172.7

Q ss_pred             CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320          194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL  273 (467)
Q Consensus       194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  273 (467)
                      ..++.++..++..+.    .+  .+.+++|++++|.++..++..|.++++|++|++++|.+....+..+.+++.++.+..
T Consensus        14 ~~v~c~~~~L~~iP~----~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~   87 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV----GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (284)
T ss_dssp             CEEECCSSCCSSCCT----TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCCCCCCccCC----CC--CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccc
Confidence            345666666664432    12  246788888888888887778888888888888888887766667777788888766


Q ss_pred             c-CCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320          274 S-ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG  352 (467)
Q Consensus       274 ~-~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  352 (467)
                      . .+.+....+..+.++++|++|++++|.+ ....+..+...++|+.+++++|.+++..+..+....     +|+.|+++
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-----~L~~L~l~  161 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----NLTHLFLH  161 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECC
T ss_pred             ccccccccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhhccccccccChhHhcccc-----chhhcccc
Confidence            4 4455555567788888888888888887 555556677778888888888888776666555554     78888888


Q ss_pred             CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320          353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV  432 (467)
Q Consensus       353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~  432 (467)
                      +|++++..+..+..+++|+++++++|.+++..|..|..+++|++|++++|++.+..+..+..+++|+.|++++|++...-
T Consensus       162 ~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            88888777777888888888888888888777788888888888888888888777778888888888888888877554


Q ss_pred             C
Q 038320          433 T  433 (467)
Q Consensus       433 ~  433 (467)
                      +
T Consensus       242 ~  242 (284)
T d1ozna_         242 R  242 (284)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.9e-23  Score=188.49  Aligned_cols=265  Identities=21%  Similarity=0.190  Sum_probs=213.4

Q ss_pred             CeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcE
Q 038320          167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLF  246 (467)
Q Consensus       167 ~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  246 (467)
                      ..++.+++.++.+|..    +.  +++++|+|++|.++...+   ..+..+++|++|++++|.+....+..+..+..++.
T Consensus        14 ~~v~c~~~~L~~iP~~----ip--~~~~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~   84 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVG----IP--AASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ   84 (284)
T ss_dssp             CEEECCSSCCSSCCTT----CC--TTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             eEEEcCCCCCCccCCC----CC--CCCCEEECcCCcCCCCCH---HHhhccccccccccccccccccccccccccccccc
Confidence            3467777778888765    32  568999999999987763   36888999999999999999998888888999999


Q ss_pred             EEcc-CCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCC
Q 038320          247 LDLS-SNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN  325 (467)
Q Consensus       247 L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  325 (467)
                      +... .+.+....+..+.++++|+.|++++|.+....+..+...++|+.+++++|.+ ++..+..+..+++|+.|++++|
T Consensus        85 l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N  163 (284)
T d1ozna_          85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN  163 (284)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccC
Confidence            8876 4556655677889999999999999999877777788899999999999999 6666677889999999999999


Q ss_pred             cCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320          326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       326 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      ++++..+..+..+.     +|+++++++|++++..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus       164 ~l~~l~~~~f~~l~-----~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         164 RISSVPERAFRGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccchhhhcccc-----ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            99877777766665     8999999999999988999999999999999999999888888999999999999999987


Q ss_pred             ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       406 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      +.-+.. .-...++.+....+.+....|. .+.+   ....+++.+
T Consensus       239 C~C~~~-~l~~~l~~~~~~~~~~~C~~p~-~l~g---~~l~~l~~~  279 (284)
T d1ozna_         239 CDCRAR-PLWAWLQKFRGSSSEVPCSLPQ-RLAG---RDLKRLAAN  279 (284)
T ss_dssp             CSGGGH-HHHHHHHHCCSEECCCBEEESG-GGTT---CBGGGSCGG
T ss_pred             CCccch-HHHHHHHhCcCCCCceEeCCch-HHcC---CccccCCHH
Confidence            543211 1112345566667777777776 4543   333444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-21  Score=178.19  Aligned_cols=196  Identities=24%  Similarity=0.209  Sum_probs=121.8

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEE
Q 038320          118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN  197 (467)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~  197 (467)
                      ...+.++++++  .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.++.++.     ++.+++|++|+
T Consensus        13 ~~v~C~~~~L~--~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-----~~~l~~L~~L~   83 (266)
T d1p9ag_          13 LEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGTLPVLGTLD   83 (266)
T ss_dssp             CEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----CSCCTTCCEEE
T ss_pred             eEEEccCCCCC--eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-----ccccccccccc
Confidence            33444444444  2343332  345555555555543333445555555555555555544332     33455555555


Q ss_pred             CCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCc
Q 038320          198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN  277 (467)
Q Consensus       198 L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  277 (467)
                      +++|.++...    ..+..+++|+.|+++++.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|+
T Consensus        84 Ls~N~l~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          84 LSHNQLQSLP----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             CCSSCCSSCC----CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccc----cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            5555554432    234556666777777776666666666777777777777777776656666677778888888887


Q ss_pred             cccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCC
Q 038320          278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD  328 (467)
Q Consensus       278 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  328 (467)
                      +++..+..+..+++|++|+|++|++ + .+|..+..+++|+.|++++|.+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L-~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSL-Y-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCC-C-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCC-c-ccChhHCCCCCCCEEEecCCCCC
Confidence            7766666777788888888888877 3 66777777778888888887765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-21  Score=176.94  Aligned_cols=200  Identities=28%  Similarity=0.308  Sum_probs=99.8

Q ss_pred             CCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCC
Q 038320          189 RLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL  268 (467)
Q Consensus       189 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  268 (467)
                      +...+.+.+.+++.++..+..    +  .+++++|++++|.+++..+..|.++++|++|++++|.++ .++ .+..+++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~----l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L   79 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVL   79 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTC
T ss_pred             ccCCCeEEEccCCCCCeeCcC----c--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccc
Confidence            444555566666666654221    1  135666666666666555555566666666666666554 232 23455555


Q ss_pred             CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320          269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES  348 (467)
Q Consensus       269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~  348 (467)
                      +.|++++|++++ .+..+..+++|+.|++++|.+ .+..+..+..+.+++.|++++|.++...+..+..+.     +++.
T Consensus        80 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-----~l~~  152 (266)
T d1p9ag_          80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEK  152 (266)
T ss_dssp             CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TCCE
T ss_pred             cccccccccccc-ccccccccccccccccccccc-ceeeccccccccccccccccccccceeccccccccc-----cchh
Confidence            555555555542 233445555555555555554 333333444445555555555554443333333322     4444


Q ss_pred             EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320          349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM  404 (467)
Q Consensus       349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l  404 (467)
                      +++++|++++..+..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            555554444444444444444444444444444 4444444444444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=4.2e-18  Score=161.43  Aligned_cols=302  Identities=24%  Similarity=0.239  Sum_probs=178.3

Q ss_pred             CEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCc
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP  158 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  158 (467)
                      +++++|+++             +.++ .+|+.   .++|++|++++|+++  .+|..   +.+|+.|++++|.++ .++.
T Consensus        39 ~l~~LdLs~-------------~~L~-~lp~~---~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~~   95 (353)
T d1jl5a_          39 QAHELELNN-------------LGLS-SLPEL---PPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALSD   95 (353)
T ss_dssp             TCSEEECTT-------------SCCS-CCCSC---CTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCCS
T ss_pred             CCCEEEeCC-------------CCCC-CCCCC---CCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhhh
Confidence            577888887             5565 35542   468888999988887  46765   357888888888876 3432


Q ss_pred             cCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccc
Q 038320          159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSV  238 (467)
Q Consensus       159 ~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  238 (467)
                       +  .+.|++|++++|.+..++.     ++.+++|++|+++++.+.....       ....+..+.+..+....  ...+
T Consensus        96 -l--p~~L~~L~L~~n~l~~lp~-----~~~l~~L~~L~l~~~~~~~~~~-------~~~~l~~l~~~~~~~~~--~~~l  158 (353)
T d1jl5a_          96 -L--PPLLEYLGVSNNQLEKLPE-----LQNSSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLEE--LPEL  158 (353)
T ss_dssp             -C--CTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS--CCCC
T ss_pred             -h--ccccccccccccccccccc-----hhhhccceeecccccccccccc-------ccccccchhhccccccc--cccc
Confidence             1  1358889999888887764     5678888889888887765432       24566777776655543  2345


Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320          239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW  318 (467)
Q Consensus       239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  318 (467)
                      ..++.++.++++.|..... +.   .....+.+...++.+. .++ .+..++.|+.+++++|..  ...+.   ...++.
T Consensus       159 ~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~--~~~~~---~~~~l~  227 (353)
T d1jl5a_         159 QNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLL--KTLPD---LPPSLE  227 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC--SSCCS---CCTTCC
T ss_pred             cccccceeccccccccccc-cc---cccccccccccccccc-ccc-cccccccccccccccccc--ccccc---cccccc
Confidence            6778888888888876532 22   1233456666555544 233 356788899999988875  33332   345677


Q ss_pred             EEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEE
Q 038320          319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY  398 (467)
Q Consensus       319 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  398 (467)
                      .+.+.++.+..... .        ...++..++..+.+.+..    .-.......++..+.+.+.    ...+++|++|+
T Consensus       228 ~~~~~~~~~~~~~~-~--------~~~l~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~  290 (353)
T d1jl5a_         228 ALNVRDNYLTDLPE-L--------PQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL----CDLPPSLEELN  290 (353)
T ss_dssp             EEECCSSCCSCCCC-C--------CTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE----CCCCTTCCEEE
T ss_pred             cccccccccccccc-c--------cccccccccccccccccc----cccchhcccccccCccccc----cccCCCCCEEE
Confidence            78888777654221 1        114555555554433210    0112334444444444321    12345566666


Q ss_pred             CcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320          399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       399 Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                      +++|+++ .+|.   .+++|+.|++++|+++ .+|.    .+++|+.|++++|+|+..+
T Consensus       291 Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         291 VSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             CCCCccC-cccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCCCCC
Confidence            6666555 3443   2455666666666554 3333    1345666666666555433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-22  Score=200.72  Aligned_cols=363  Identities=20%  Similarity=0.161  Sum_probs=242.0

Q ss_pred             CEEEEEcCCCCCCCCcCCCCccccccccc-CccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCcCCC
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEI-SPSVLDLKHLNYLDLSLNNFRGS---RIPNFLGSLEKLRYLNLSGASFAG  154 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~  154 (467)
                      .++.+|+++             +++++.. ..-+..++++++|+|++|.++..   .++..+..+++|++|+|++|.++.
T Consensus         3 ~l~~ld~~~-------------~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~   69 (460)
T d1z7xw1           3 DIQSLDIQC-------------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   69 (460)
T ss_dssp             EEEEEEEES-------------CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             CCCEEEeeC-------------CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh
Confidence            467888887             7776642 33456789999999999988743   134556789999999999998852


Q ss_pred             C----CCccCC-CCCcCCeeeccCccCCCCCCCCh-hhcCCCCCCCEEECCCcCCCCCCCch------------------
Q 038320          155 N----IPPSFG-NLSSLQILDLNTFYYSSLESDDV-EWLSRLSSLQYLNLEGVDLSKAGSSW------------------  210 (467)
Q Consensus       155 ~----~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~------------------  210 (467)
                      .    +...+. ...+|++|++++|.++......+ ..+..+++|++|++++|.+.......                  
T Consensus        70 ~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~  149 (460)
T d1z7xw1          70 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  149 (460)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccc
Confidence            1    222232 34579999999998765432222 33678899999999998765422110                  


Q ss_pred             ------------hhhcCCCCCCCEEECCCCcCcccCCc----cc-cCCCCCcEEEccCCcCCCC----cchhccCCCCCC
Q 038320          211 ------------VQATNMLPSLSELHLPACGLFEFPPL----SV-VNFSSLLFLDLSSNDFNSS----IPQWLLNISKLA  269 (467)
Q Consensus       211 ------------~~~~~~l~~L~~L~l~~n~~~~~~~~----~l-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~  269 (467)
                                  ...+.....++.++++++........    .+ ........+++..+.+...    ....+...+.++
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  229 (460)
T d1z7xw1         150 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  229 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence                        01112234566666665554321110    01 1123455666666655432    112344567889


Q ss_pred             EEeccCCccccc-----cchhhhCCCCCCEEeCCCCCCCCCC----CcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320          270 HLDLSANNLQGN-----IPDAFANMTSLRELDLSENSLIGGQ----IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK  340 (467)
Q Consensus       270 ~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~  340 (467)
                      .+++.+|.....     ..........++.+++++|.+ ...    ....+...+.++.+++++|.+++.....+.....
T Consensus       230 ~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i-~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~  308 (460)
T d1z7xw1         230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL  308 (460)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred             ccchhhccccccccchhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccccchhhcccc
Confidence            999988876432     223344577899999999987 322    2234566789999999999998776666655443


Q ss_pred             ccCCCccEEECcCCCCCcCCCc----cccCCCCCCEEEccCCcCccc----cccccc-CCCCCCEEECcCCcCccc----
Q 038320          341 CANSSLESLDLGQNNLGGFLPN----SLGQLENLKILQLWGNLFRGS----IPESIG-NLSSLRELYLHNNLMDGT----  407 (467)
Q Consensus       341 ~~~~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~l~~n~l~~~----~~~~l~-~~~~L~~L~Ls~n~l~~~----  407 (467)
                      .....|+.+++++|.++.....    .+...++|++|+|++|.+++.    ++..+. ..+.|++|+|++|.+++.    
T Consensus       309 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  388 (460)
T d1z7xw1         309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  388 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHH
Confidence            3445899999999998865323    345667899999999998753    333343 467899999999999864    


Q ss_pred             ChhhhcCCCCCCEEeCcCCCCcccCChh---hhC-CCCCCCEEeccCCCCCC
Q 038320          408 IPKSLGKLSHLVVLDISGNPWIGLVTEV---HFS-KLKNLKELHIAKYSLAP  455 (467)
Q Consensus       408 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~-~l~~L~~l~l~~n~i~~  455 (467)
                      +++.+..+++|++|++++|+++......   .+. +...|+.|++.+|++.+
T Consensus       389 l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            5566778899999999999987643321   233 34579999999997753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=3e-17  Score=155.44  Aligned_cols=295  Identities=23%  Similarity=0.290  Sum_probs=208.5

Q ss_pred             CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320           78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP  157 (467)
Q Consensus        78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  157 (467)
                      .+++.+++++             |+++ .+|..   +.+|+.|++++|+++.  ++..   .+.|++|++++|.+. .+|
T Consensus        58 ~~L~~L~Ls~-------------N~l~-~lp~~---~~~L~~L~l~~n~l~~--l~~l---p~~L~~L~L~~n~l~-~lp  114 (353)
T d1jl5a_          58 PHLESLVASC-------------NSLT-ELPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLE-KLP  114 (353)
T ss_dssp             TTCSEEECCS-------------SCCS-SCCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCCCEEECCC-------------CCCc-ccccc---hhhhhhhhhhhcccch--hhhh---ccccccccccccccc-ccc
Confidence            4566677766             7777 55654   4689999999998873  4432   246999999999998 666


Q ss_pred             ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320          158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS  237 (467)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  237 (467)
                      . ++.+++|++|+++++.+...+..       ...+..+.+..+......     .+..++.++.+++.+|........ 
T Consensus       115 ~-~~~l~~L~~L~l~~~~~~~~~~~-------~~~l~~l~~~~~~~~~~~-----~l~~l~~l~~L~l~~n~~~~~~~~-  180 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDNNSLKKLPDL-------PPSLEFIAAGNNQLEELP-----ELQNLPFLTAIYADNNSLKKLPDL-  180 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSSCC-----CCTTCTTCCEEECCSSCCSSCCCC-
T ss_pred             c-hhhhccceeeccccccccccccc-------cccccchhhccccccccc-----cccccccceecccccccccccccc-
Confidence            5 68899999999999988765443       466778888777665432     567789999999999987654332 


Q ss_pred             ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320          238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL  317 (467)
Q Consensus       238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  317 (467)
                         ....+.+....+.+. .++. +..++.|+.+++++|.... .+.   ...++..+.+.++.+ . ..+.   ..+.+
T Consensus       181 ---~~~~~~l~~~~~~~~-~~~~-~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~-~-~~~~---~~~~l  246 (353)
T d1jl5a_         181 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYL-T-DLPE---LPQSL  246 (353)
T ss_dssp             ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCC-S-CCCC---CCTTC
T ss_pred             ---ccccccccccccccc-cccc-ccccccccccccccccccc-ccc---ccccccccccccccc-c-cccc---ccccc
Confidence               233456666655543 3333 5678999999999988763 332   356788899988877 2 2222   34567


Q ss_pred             CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      ...++..+.+.+..     ...    ......++..+.+.+.    ...+++|++|++++|.++ .+|.   .+++|+.|
T Consensus       247 ~~~~~~~~~~~~l~-----~l~----~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L  309 (353)
T d1jl5a_         247 TFLDVSENIFSGLS-----ELP----PNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERL  309 (353)
T ss_dssp             CEEECCSSCCSEES-----CCC----TTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             cccccccccccccc-----ccc----chhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEE
Confidence            77777776654311     111    1456677777766533    345789999999999998 6675   36789999


Q ss_pred             ECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEecc
Q 038320          398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA  449 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~  449 (467)
                      ++++|+++ .+|..   +++|++|++++|++. .+|. .   ..+|+.|.+.
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~-~---~~~L~~L~~~  352 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD-I---PESVEDLRMN  352 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC-C---CTTCCEEECC
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc-c---ccccCeeECc
Confidence            99999998 66753   568999999999976 5665 1   3467777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2e-18  Score=153.43  Aligned_cols=189  Identities=21%  Similarity=0.298  Sum_probs=128.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320          111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL  190 (467)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l  190 (467)
                      +..+.+|++|++.+|.++.  + ..+..+++|++|++++|.+++..  .+..+++|+++++++|.++.++.     +..+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i~~-----l~~l  106 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA-----IAGL  106 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCCGG-----GTTC
T ss_pred             HHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccccc-----cccc
Confidence            4567788888888888873  4 34778888888888888887432  27788888888888887765542     6777


Q ss_pred             CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320          191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH  270 (467)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  270 (467)
                      ++|+.++++++...+..     .+...+.++.+.++.+.+....  .+..+++|++|++++|.+.+..  .+.++++|+.
T Consensus       107 ~~L~~l~l~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~  177 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT  177 (227)
T ss_dssp             TTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             ccccccccccccccccc-----hhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhccccccee
Confidence            88888888877766543     4556677777777777665433  3456677777777777665332  2566777777


Q ss_pred             EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320          271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS  323 (467)
Q Consensus       271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  323 (467)
                      |++++|++++ ++ .++++++|++|++++|++ + .++ .++++++|+.|+++
T Consensus       178 L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~l-t-~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         178 LKADDNKISD-IS-PLASLPNLIEVHLKNNQI-S-DVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCC-CG-GGGGCTTCCEEECTTSCC-C-BCG-GGTTCTTCCEEEEE
T ss_pred             cccCCCccCC-Ch-hhcCCCCCCEEECcCCcC-C-CCc-ccccCCCCCEEEee
Confidence            7777777664 22 256677777777777766 3 232 35666777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=4.4e-18  Score=151.14  Aligned_cols=189  Identities=23%  Similarity=0.349  Sum_probs=119.8

Q ss_pred             ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320          238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL  317 (467)
Q Consensus       238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  317 (467)
                      +..+.+|++|++.+|.++. + +.+.++++|+.|++++|.+++..+  +..+++++++++++|.+ + .+ ..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~-~-~i-~~l~~l~~L  109 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-K-NV-SAIAGLQSI  109 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-S-CC-GGGTTCTTC
T ss_pred             HHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc-c-cc-ccccccccc
Confidence            3445566666666666653 3 235566666666666666654332  56666677777666665 2 22 245566777


Q ss_pred             CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      +.++++++...+..+  +...     +.++.+.++++.+...  ..+..+++|++|++++|.+.+..  .+.++++|+.|
T Consensus       110 ~~l~l~~~~~~~~~~--~~~~-----~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  178 (227)
T d1h6ua2         110 KTLDLTSTQITDVTP--LAGL-----SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTL  178 (227)
T ss_dssp             CEEECTTSCCCCCGG--GTTC-----TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             cccccccccccccch--hccc-----cchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceec
Confidence            777777666554322  1222     2677777777766543  23566777888888888776432  36777888888


Q ss_pred             ECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEecc
Q 038320          398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA  449 (467)
Q Consensus       398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~  449 (467)
                      ++++|++++ ++ .++.+++|++|++++|++++. +  .+.++++|+.|+++
T Consensus       179 ~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         179 KADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S--PLANTSNLFIVTLT  225 (227)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G--GGTTCTTCCEEEEE
T ss_pred             ccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c--ccccCCCCCEEEee
Confidence            888888774 33 367788888888888887653 3  26778888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.5e-20  Score=182.37  Aligned_cols=353  Identities=22%  Similarity=0.211  Sum_probs=239.3

Q ss_pred             CEEEEEcCCCCCCCCcCCCCccccccc----ccCccccCCCCCCEEeCCCCCCCCCC---CCcccC-CCCCCCEEEcCCC
Q 038320           79 KVVQLKLRSPEIPDSFTDNGTTYQLEG----EISPSVLDLKHLNYLDLSLNNFRGSR---IPNFLG-SLEKLRYLNLSGA  150 (467)
Q Consensus        79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~~~~-~l~~L~~L~L~~n  150 (467)
                      ..+.++|++             +.++.    .++..+..+++|++|+|++|.+++..   +...+. ...+|++|++++|
T Consensus        28 ~l~~L~L~~-------------~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          28 QCQVVRLDD-------------CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             TCSEEEEES-------------SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             CCCEEEeCC-------------CCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence            355677766             66653    34566789999999999999886421   222232 2458999999999


Q ss_pred             cCCCC----CCccCCCCCcCCeeeccCccCCCCCCCC------------------------------hhhcCCCCCCCEE
Q 038320          151 SFAGN----IPPSFGNLSSLQILDLNTFYYSSLESDD------------------------------VEWLSRLSSLQYL  196 (467)
Q Consensus       151 ~l~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~~------------------------------~~~l~~l~~L~~L  196 (467)
                      .+++.    ++..+..+++|++|++++|.+.......                              ...+.....++.+
T Consensus        95 ~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  174 (460)
T d1z7xw1          95 CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL  174 (460)
T ss_dssp             CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred             Cccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccc
Confidence            98743    4556788999999999999876311000                              0113345678888


Q ss_pred             ECCCcCCCCCCCch-hhh-cCCCCCCCEEECCCCcCcccCC----ccccCCCCCcEEEccCCcCCCC-----cchhccCC
Q 038320          197 NLEGVDLSKAGSSW-VQA-TNMLPSLSELHLPACGLFEFPP----LSVVNFSSLLFLDLSSNDFNSS-----IPQWLLNI  265 (467)
Q Consensus       197 ~L~~n~~~~~~~~~-~~~-~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l  265 (467)
                      +++++......... ... .........+++..+.+.....    ..+...+.++.+++++|.+...     ........
T Consensus       175 ~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~  254 (460)
T d1z7xw1         175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS  254 (460)
T ss_dssp             ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccc
Confidence            88877654332110 011 1223456778888876653321    2345678899999999876432     23334557


Q ss_pred             CCCCEEeccCCccccc----cchhhhCCCCCCEEeCCCCCCCCCCCccc----c-cCCCCCCEEeccCCcCCCchhhHHH
Q 038320          266 SKLAHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQIPKD----L-GSLCNLWDLDLSGNDLDGEIIEFVD  336 (467)
Q Consensus       266 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~----l-~~l~~L~~L~l~~n~l~~~~~~~l~  336 (467)
                      ..++.+++++|.+...    ....+...+.++.+++++|.+ ++.....    + .....|+.++++++.++......+.
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i-~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            7899999999988643    233456788999999999988 3322221    1 2346899999999999887777666


Q ss_pred             hhhcccCCCccEEECcCCCCCcC----CCcccc-CCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc
Q 038320          337 RLSKCANSSLESLDLGQNNLGGF----LPNSLG-QLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT  407 (467)
Q Consensus       337 ~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~-~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~  407 (467)
                      .+.. ..++|++|+|++|++++.    ++..+. ..+.|++|++++|.+++.    ++..+..+++|++|+|++|++++.
T Consensus       334 ~~~~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         334 SVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cccc-cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence            5432 234799999999999753    333343 467899999999999853    445566789999999999999875


Q ss_pred             Chhh----hc-CCCCCCEEeCcCCCCcccCChh---hhCCCCCCCEE
Q 038320          408 IPKS----LG-KLSHLVVLDISGNPWIGLVTEV---HFSKLKNLKEL  446 (467)
Q Consensus       408 ~p~~----l~-~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~l  446 (467)
                      ....    +. +...|+.|++.+|.+.+.....   .....|+|+.|
T Consensus       413 g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            4433    33 3447999999999988654431   23456777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.9e-17  Score=144.94  Aligned_cols=165  Identities=27%  Similarity=0.354  Sum_probs=86.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320          113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS  192 (467)
Q Consensus       113 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~  192 (467)
                      .+..|++|++++|.++.  ++ .+..+++|++|++++|++++ ++. ++.+++|++|++++|.++.++.     +..+++
T Consensus        44 ~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~i~~l~~-----l~~l~~  113 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSS-----LKDLKK  113 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGG-----GTTCTT
T ss_pred             HhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccC-ccc-cccCcccccccccccccccccc-----cccccc
Confidence            34566666776666653  22 25556666666666666653 332 4566666666666666554331     455555


Q ss_pred             CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320          193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD  272 (467)
Q Consensus       193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  272 (467)
                      |+.|++++|.+....     .                        +..+++++.+++++|.+++.  ..+..+++|+.++
T Consensus       114 L~~L~l~~~~~~~~~-----~------------------------l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~  162 (210)
T d1h6ta2         114 LKSLSLEHNGISDIN-----G------------------------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (210)
T ss_dssp             CCEEECTTSCCCCCG-----G------------------------GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ccccccccccccccc-----c------------------------cccccccccccccccccccc--ccccccccccccc
Confidence            555555555543321     2                        34444455555555544321  2234455555555


Q ss_pred             ccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320          273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS  323 (467)
Q Consensus       273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  323 (467)
                      +++|++++. + .+.++++|+.|++++|++ + .++ .+.++++|++|+++
T Consensus       163 l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i-~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         163 LEDNQISDI-V-PLAGLTKLQNLYLSKNHI-S-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCCEEECCSSCC-C-BCG-GGTTCTTCSEEEEE
T ss_pred             ccccccccc-c-cccCCCCCCEEECCCCCC-C-CCh-hhcCCCCCCEEEcc
Confidence            555555432 1 245555555555555555 2 232 35555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=6.9e-17  Score=140.06  Aligned_cols=163  Identities=28%  Similarity=0.385  Sum_probs=86.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320          112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS  191 (467)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~  191 (467)
                      ..++++++|++++|.++.  + +.++.+++|++|++++|++++ ++. ++++++|++|++++|.+..++.     +.+++
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~~~~-----l~~l~  106 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP-----LANLT  106 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-----GTTCT
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccccccc-----ccccc
Confidence            345677777777776663  2 235666777777777777663 332 6666777777776666554432     45555


Q ss_pred             CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320          192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL  271 (467)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  271 (467)
                      +|+.|+++++......     .+..+                        ++|+.|++++|.+.. + ..+..+++|+.|
T Consensus       107 ~L~~L~l~~~~~~~~~-----~~~~l------------------------~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L  155 (199)
T d2omxa2         107 NLTGLTLFNNQITDID-----PLKNL------------------------TNLNRLELSSNTISD-I-SALSGLTSLQQL  155 (199)
T ss_dssp             TCSEEECCSSCCCCCG-----GGTTC------------------------TTCSEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred             cccccccccccccccc-----ccchh------------------------hhhHHhhhhhhhhcc-c-cccccccccccc
Confidence            6666666555544332     23344                        444455555544432 2 124445555555


Q ss_pred             eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEE
Q 038320          272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL  320 (467)
Q Consensus       272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  320 (467)
                      ++.+|.+++. + .++++++|++|++++|++ ++ ++ .++.+++|+.|
T Consensus       156 ~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i-~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDL-K-PLANLTTLERLDISSNKV-SD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCCEEECCSSCC-CC-CG-GGGGCTTCSEE
T ss_pred             ccccccccCC-c-cccCCCCCCEEECCCCCC-CC-Cc-cccCCCCCCcC
Confidence            5555555432 1 245555555555555555 22 22 34455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.5e-17  Score=140.40  Aligned_cols=79  Identities=29%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             ccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCC
Q 038320          364 LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL  443 (467)
Q Consensus       364 l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  443 (467)
                      +..+++++.+++++|.+++  +..+..+++|+++++++|++++ ++ .+.++++|++|++++|++++ ++  .+.++++|
T Consensus       130 l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L  202 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR--ALAGLKNL  202 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG--GGTTCTTC
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch--hhcCCCCC
Confidence            3444444455554444442  1123344555555555555542 22 14445555555555555432 22  24455555


Q ss_pred             CEEecc
Q 038320          444 KELHIA  449 (467)
Q Consensus       444 ~~l~l~  449 (467)
                      +.|+|+
T Consensus       203 ~~L~Ls  208 (210)
T d1h6ta2         203 DVLELF  208 (210)
T ss_dssp             SEEEEE
T ss_pred             CEEEcc
Confidence            555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=147.49  Aligned_cols=202  Identities=24%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCCEEeccC-CccccccchhhhCCCCCCEEe
Q 038320          219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSA-NNLQGNIPDAFANMTSLRELD  296 (467)
Q Consensus       219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~  296 (467)
                      ++++|++++|.+....+..|.++++|++|++++|.+...++ ..+.++++++.+.+.. |.+....+..+.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            45555555555555444455556666666666665544332 2345555555555432 344444444455555566666


Q ss_pred             CCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCC-CCCEEEc
Q 038320          297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLE-NLKILQL  375 (467)
Q Consensus       297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~l  375 (467)
                      +++|.+........+..+.                             .++.+...++.+....+..+..++ .++.|++
T Consensus       110 l~~~~l~~~~~~~~~~~l~-----------------------------~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQ-----------------------------KVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSS-----------------------------CEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             cchhhhccccccccccccc-----------------------------ccccccccccccccccccccccccccceeeec
Confidence            6555541111111111222                             233333333334333333333332 4556666


Q ss_pred             cCCcCcccccccccCCCCCCEE-ECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320          376 WGNLFRGSIPESIGNLSSLREL-YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY  451 (467)
Q Consensus       376 ~~n~l~~~~~~~l~~~~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n  451 (467)
                      ++|.+++ ++......++++++ .+++|+++...+..|.++++|++|++++|+++. +|...|.+++.|+.+++.+.
T Consensus       161 ~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         161 NKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCEEESSSEESS
T ss_pred             ccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcccccCcCCCC
Confidence            6666653 33333334444444 345555653333445666677777776666653 33325666666665555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=4.2e-16  Score=135.01  Aligned_cols=75  Identities=33%  Similarity=0.457  Sum_probs=34.1

Q ss_pred             ccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCC
Q 038320          364 LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL  443 (467)
Q Consensus       364 l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  443 (467)
                      +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|++++. + .+.++++|++|++++|++++ ++  .++.+++|
T Consensus       124 ~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~--~l~~L~~L  196 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS--VLAKLTNL  196 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTC
T ss_pred             cchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc--cccCCCCC
Confidence            3444455555555554431 22 244455555555555555432 1 24455555555555555443 22  23444444


Q ss_pred             CE
Q 038320          444 KE  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       197 ~~  198 (199)
T d2omxa2         197 ES  198 (199)
T ss_dssp             SE
T ss_pred             Cc
Confidence            44

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.2e-17  Score=144.60  Aligned_cols=201  Identities=16%  Similarity=0.122  Sum_probs=125.4

Q ss_pred             EEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCC-cccccCCCCCCEEeccC
Q 038320          246 FLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQI-PKDLGSLCNLWDLDLSG  324 (467)
Q Consensus       246 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~  324 (467)
                      .++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+ ...+ +..+..++.++.+.+..
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~-~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT-CCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccc-cceeeccccccccccccccccc
Confidence            4455554444 4444332  3566666666666544444566666666666666665 2222 33455666666666543


Q ss_pred             -CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCC-ccccCCCCCCEEEccCCcCcccccccccCCC-CCCEEECcC
Q 038320          325 -NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPESIGNLS-SLRELYLHN  401 (467)
Q Consensus       325 -n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~Ls~  401 (467)
                       |.+....+..+..++     +|+++++++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.|++++
T Consensus        88 ~n~l~~~~~~~~~~l~-----~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLP-----NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CTTCCEECTTSEECCT-----TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccc-----cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence             445444444444443     77777777777764322 2334556666677777777755556666654 788999999


Q ss_pred             CcCcccChhhhcCCCCCCEEe-CcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320          402 NLMDGTIPKSLGKLSHLVVLD-ISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL  457 (467)
Q Consensus       402 n~l~~~~p~~l~~l~~L~~L~-l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~  457 (467)
                      |+++. ++......++++++. +++|+++ .++...|.++++|+.|++++|+|+..+
T Consensus       163 n~l~~-i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         163 NGIQE-IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             SCCCE-ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             ccccc-cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccC
Confidence            99985 444444566666665 5666665 455547999999999999999888543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.8e-17  Score=148.23  Aligned_cols=83  Identities=20%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             CCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCC-ccccc-cchhhhCCCCCCE
Q 038320          218 PSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSAN-NLQGN-IPDAFANMTSLRE  294 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~  294 (467)
                      .+|++|++++|.+.+. ....+.++++|++|+++++.+++..+..+..+++|+.|++++| .+++. +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3555555555544332 1222344455555555555544444444444555555555543 22211 1111233455555


Q ss_pred             EeCCCC
Q 038320          295 LDLSEN  300 (467)
Q Consensus       295 L~L~~n  300 (467)
                      |++++|
T Consensus       126 L~ls~c  131 (284)
T d2astb2         126 LNLSWC  131 (284)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=6.6e-17  Score=139.33  Aligned_cols=153  Identities=24%  Similarity=0.280  Sum_probs=93.8

Q ss_pred             CCCEEeCCCCCCCCC-CCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320          291 SLRELDLSENSLIGG-QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN  369 (467)
Q Consensus       291 ~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~  369 (467)
                      ++++|+|++|++ +. ..+..|..+++|+.|++++|.+....+..+....     +|++|++++|+++...+..|.++++
T Consensus        30 ~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-----~L~~L~Ls~N~l~~l~~~~F~~l~~  103 (192)
T d1w8aa_          30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-----HIQELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-----TCCEEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCEEEeCCCCC-cccccccccCCCceEeeeecccccccccccccccccc-----ccceeeeccccccccCHHHHhCCCc
Confidence            455555555555 22 2233445555566666665555555554444444     6677777777777666667777888


Q ss_pred             CCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEecc
Q 038320          370 LKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA  449 (467)
Q Consensus       370 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~  449 (467)
                      |++|+|++|.+++..+..|..+++|++|+|++|.+........ -...++.+.+..+.+....|.    .+..++.++|+
T Consensus       104 L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~----~l~~~~l~~L~  178 (192)
T d1w8aa_         104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS----KVRDVQIKDLP  178 (192)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST----TTTTSBGGGSC
T ss_pred             ccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh----hhcCCEeeecC
Confidence            8888888888876666677778888888888887764322111 112345556666666655554    34566677888


Q ss_pred             CCCCC
Q 038320          450 KYSLA  454 (467)
Q Consensus       450 ~n~i~  454 (467)
                      .|+++
T Consensus       179 ~n~l~  183 (192)
T d1w8aa_         179 HSEFK  183 (192)
T ss_dssp             TTTCC
T ss_pred             HhhCc
Confidence            88665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=1.1e-16  Score=151.27  Aligned_cols=250  Identities=20%  Similarity=0.181  Sum_probs=121.4

Q ss_pred             cCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccC---CccccCCCCCcEEEccCCcCCCCcchhc
Q 038320          187 LSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFP---PLSVVNFSSLLFLDLSSNDFNSSIPQWL  262 (467)
Q Consensus       187 l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l  262 (467)
                      +.+...|+.|+|++|.+...... +...+...++|+.++++++......   +..+.                 .+...+
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----------------~l~~~l   89 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LLLQAL   89 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HHHHHH
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH-----------------HHHHHH
Confidence            44566677777776665443211 1223445566666666554332111   10000                 011222


Q ss_pred             cCCCCCCEEeccCCccccc----cchhhhCCCCCCEEeCCCCCCCCCCCc-------------ccccCCCCCCEEeccCC
Q 038320          263 LNISKLAHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQIP-------------KDLGSLCNLWDLDLSGN  325 (467)
Q Consensus       263 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~-------------~~l~~l~~L~~L~l~~n  325 (467)
                      ..+++|+.|++++|.+...    +...+..+++|++|++++|.+ +....             ......+.|+.+++++|
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccc-cccccccccccccccccccccccCcccceeecccc
Confidence            3344455555555544332    122233445555555555544 11100             01123456666666666


Q ss_pred             cCCCchhhHHHhhhcccCCCccEEECcCCCCCcC-----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCE
Q 038320          326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF-----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRE  396 (467)
Q Consensus       326 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~  396 (467)
                      .++......+.... ...+.|++|++++|+++..     +...+..+++|+.|++++|.++..    +...+..+++|++
T Consensus       169 ~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         169 RLENGSMKEWAKTF-QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             CCTGGGHHHHHHHH-HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             cccccccccccchh-hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            66544433333221 1112566666666666532     223345566677777777766532    2334556677777


Q ss_pred             EECcCCcCcccCh----hhhcC--CCCCCEEeCcCCCCcccCChh---hh-CCCCCCCEEeccCCCCCC
Q 038320          397 LYLHNNLMDGTIP----KSLGK--LSHLVVLDISGNPWIGLVTEV---HF-SKLKNLKELHIAKYSLAP  455 (467)
Q Consensus       397 L~Ls~n~l~~~~p----~~l~~--l~~L~~L~l~~n~~~~~~~~~---~~-~~l~~L~~l~l~~n~i~~  455 (467)
                      |++++|.+++...    +.+..  .+.|++|++++|+++..-...   .+ .+++.|+.|++++|++.+
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            7777777665422    22322  356777777777665321110   12 245667777777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-16  Score=142.80  Aligned_cols=183  Identities=24%  Similarity=0.244  Sum_probs=113.3

Q ss_pred             CCCCCcEEEccCCcCCCC-cchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCC-CcccccCCCCC
Q 038320          240 NFSSLLFLDLSSNDFNSS-IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ-IPKDLGSLCNL  317 (467)
Q Consensus       240 ~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~l~~l~~L  317 (467)
                      ...+|++|+++++.++.. +...+.++++|++|++++|.+.+..+..++.+++|++|++++|.-.++. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345777777777766543 3344566777777777777777666666777777777777775321322 22233456777


Q ss_pred             CEEeccCC-cCCCchhh-HHHhhhcccCCCccEEECcCC--CCCcC-CCccccCCCCCCEEEccCCc-CcccccccccCC
Q 038320          318 WDLDLSGN-DLDGEIIE-FVDRLSKCANSSLESLDLGQN--NLGGF-LPNSLGQLENLKILQLWGNL-FRGSIPESIGNL  391 (467)
Q Consensus       318 ~~L~l~~n-~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n--~i~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~  391 (467)
                      ++|++++| .+++.... .+...    .++|+.|+++++  .+++. +......+++|++|++++|. +++.....+..+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHV----SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHS----CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             cccccccccccccccchhhhccc----ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            77777775 34432221 12221    236777777764  24322 22233456777777777753 565666667777


Q ss_pred             CCCCEEECcCC-cCcccChhhhcCCCCCCEEeCcCC
Q 038320          392 SSLRELYLHNN-LMDGTIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       392 ~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~l~~n  426 (467)
                      ++|++|++++| .+++.....+.++++|+.|++++|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77777777775 566666666777777777777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.63  E-value=1.9e-16  Score=149.59  Aligned_cols=262  Identities=18%  Similarity=0.168  Sum_probs=145.5

Q ss_pred             CCccCCCCCcCCeeeccCccCCCCCCCC-hhhcCCCCCCCEEECCCcCCCCCCCc-------hhhhcCCCCCCCEEECCC
Q 038320          156 IPPSFGNLSSLQILDLNTFYYSSLESDD-VEWLSRLSSLQYLNLEGVDLSKAGSS-------WVQATNMLPSLSELHLPA  227 (467)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~~~~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~-------~~~~~~~l~~L~~L~l~~  227 (467)
                      +...+....+|+.|++++|.+....... ...+...++|+.++++++........       ....+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            4455677899999999999865322111 12367889999999998866544221       233445566777777777


Q ss_pred             CcCcccCC----ccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCC
Q 038320          228 CGLFEFPP----LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLI  303 (467)
Q Consensus       228 n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  303 (467)
                      |.+.....    ..+...++|++|++++|.+.......+..  .+..+         .........+.|+.+++++|.+ 
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i-  170 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRL-  170 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCC-
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeecccccc-
Confidence            66654322    12223455555555555442110000000  00000         0000112345666666666655 


Q ss_pred             CCC----CcccccCCCCCCEEeccCCcCCCchhhH-HHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEE
Q 038320          304 GGQ----IPKDLGSLCNLWDLDLSGNDLDGEIIEF-VDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQ  374 (467)
Q Consensus       304 ~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~  374 (467)
                      +..    +...+..++.|+.|++++|.++...... +... ....++|+.|++++|.++..    +...+..+++|++|+
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~-l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhh-hcchhhhcccccccccccccccccccccccccccchhhh
Confidence            221    1223445566777777776665433221 1111 11233677777777766532    334556677788888


Q ss_pred             ccCCcCccccccc----cc--CCCCCCEEECcCCcCccc----Chhhhc-CCCCCCEEeCcCCCCcc
Q 038320          375 LWGNLFRGSIPES----IG--NLSSLRELYLHNNLMDGT----IPKSLG-KLSHLVVLDISGNPWIG  430 (467)
Q Consensus       375 l~~n~l~~~~~~~----l~--~~~~L~~L~Ls~n~l~~~----~p~~l~-~l~~L~~L~l~~n~~~~  430 (467)
                      +++|.+++.....    +.  ..+.|++|++++|+++..    +...+. ++++|+.|++++|++..
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            8888776543222    22  246788888888888654    344443 57788999999888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=1.8e-15  Score=130.24  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=98.9

Q ss_pred             CCCCEEECCCCcCcc-cCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEe
Q 038320          218 PSLSELHLPACGLFE-FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELD  296 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  296 (467)
                      +++++|++++|+++. ..+..|.++++|++|++++|.+....+..+..+++|+.|++++|+++...+..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            355666666666654 3345567777788888888877777777777778888888888888766677778888888888


Q ss_pred             CCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh-hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEc
Q 038320          297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII-EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQL  375 (467)
Q Consensus       297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  375 (467)
                      |++|++ +...+..|..+++|+++++++|.+..... .++..       .++.+.+..+.++...|..   +..++.+++
T Consensus       109 L~~N~l-~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~-------~l~~~~l~~~~~~c~~p~~---l~~~~l~~L  177 (192)
T d1w8aa_         109 LYDNQI-SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE-------WLRKKSLNGGAARCGAPSK---VRDVQIKDL  177 (192)
T ss_dssp             CCSSCC-CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH-------HHHHHCCSGGGCBBCSSTT---TTTSBGGGS
T ss_pred             cCCccc-cccCHHHhcCCcccccccccccccccccchHHHhh-------hhhhhcccCCCeEeCCChh---hcCCEeeec
Confidence            888887 55556677788888888888887765332 22221       2333445555555443432   333444455


Q ss_pred             cCCcCc
Q 038320          376 WGNLFR  381 (467)
Q Consensus       376 ~~n~l~  381 (467)
                      +.+.+.
T Consensus       178 ~~n~l~  183 (192)
T d1w8aa_         178 PHSEFK  183 (192)
T ss_dssp             CTTTCC
T ss_pred             CHhhCc
Confidence            555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.1e-14  Score=112.57  Aligned_cols=103  Identities=23%  Similarity=0.326  Sum_probs=62.5

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEE
Q 038320          118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN  197 (467)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~  197 (467)
                      |+|+|++|+++  .++ .++.+++|++|++++|.++ .+|+.+..+++|++|++++|.++.++.     +..+++|++|+
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~-----~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEE
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCc-----cccccccCeEE
Confidence            46777777776  233 3566777777777777776 556666677777777777777665531     55666666666


Q ss_pred             CCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCc
Q 038320          198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF  231 (467)
Q Consensus       198 L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  231 (467)
                      +++|.++....  ...+..+++|+.|++++|.+.
T Consensus        72 l~~N~i~~~~~--~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNNRLQQSAA--IQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSCCCSSST--TGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCccCCCCC--chhhcCCCCCCEEECCCCcCC
Confidence            66666654431  123444555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.7e-15  Score=121.71  Aligned_cols=115  Identities=19%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCC
Q 038320          110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSR  189 (467)
Q Consensus       110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~  189 (467)
                      .+.+..++|+|+|++|+|+.  ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++.++...   +..
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~---~~~   85 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGL---DQA   85 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCH---HHH
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccc---ccc
Confidence            35677789999999999884  5666777899999999999887 444 4788889999999999888777652   345


Q ss_pred             CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc
Q 038320          190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF  233 (467)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  233 (467)
                      +++|++|++++|.+.....  ...+..+++|++|++++|.+...
T Consensus        86 l~~L~~L~L~~N~i~~~~~--l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccccccceecccccccccc--ccccccccccchhhcCCCccccc
Confidence            7777777777777765421  22445566666666666655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.5e-14  Score=111.07  Aligned_cols=119  Identities=29%  Similarity=0.373  Sum_probs=75.4

Q ss_pred             CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320          318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL  397 (467)
Q Consensus       318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  397 (467)
                      +.|++++|+++...  .+..+.     +|++|++++|+++ .+|..++.+++|++|++++|.+++ +| .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~-----~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLL-----LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGT-----TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCc--ccccCC-----CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeE
Confidence            46777777776432  244444     6777777777776 345567777777777777777763 33 36677777777


Q ss_pred             ECcCCcCcccC-hhhhcCCCCCCEEeCcCCCCcccC--ChhhhCCCCCCCEE
Q 038320          398 YLHNNLMDGTI-PKSLGKLSHLVVLDISGNPWIGLV--TEVHFSKLKNLKEL  446 (467)
Q Consensus       398 ~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~l  446 (467)
                      ++++|++.+.. ...+..+++|+.|++++|++++..  +...+..+|+|+.+
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77777776432 245667777777777777765322  22234456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-14  Score=117.56  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             CCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCC
Q 038320          138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML  217 (467)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l  217 (467)
                      +..+|++|++++|+++ .++..+..+++|++|++++|.++.++                                .+..+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~--------------------------------~~~~l   62 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD--------------------------------GFPLL   62 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEEC--------------------------------CCCCC
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccC--------------------------------CcccC
Confidence            4445555555555554 33443344555555555555444332                                23444


Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCc-chhccCCCCCCEEeccCCcccccc---chhhhCCCCCC
Q 038320          218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSI-PQWLLNISKLAHLDLSANNLQGNI---PDAFANMTSLR  293 (467)
Q Consensus       218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~  293 (467)
                      ++|++|++++|+++...+..+..+++|++|++++|.+.... ...+..+++|+.|++++|.++...   +..+..+|+|+
T Consensus        63 ~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             cchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            55555555555555544444455566666666666654311 123455566666666666554221   12244455555


Q ss_pred             EEe
Q 038320          294 ELD  296 (467)
Q Consensus       294 ~L~  296 (467)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.3e-13  Score=118.56  Aligned_cols=128  Identities=21%  Similarity=0.297  Sum_probs=74.4

Q ss_pred             CCCEEeccCCc-cccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCC
Q 038320          267 KLAHLDLSANN-LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS  345 (467)
Q Consensus       267 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~  345 (467)
                      .++.+++.+.. -...++..+..+++|++|++++|.+ . .++ .+..+++|+.|++++|.++. ++.......     +
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I-~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~-----~   94 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-E-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVAD-----T   94 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE-S-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHH-----H
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCC-C-Ccc-cccCCccccChhhccccccc-ccccccccc-----c
Confidence            34555554431 1113455677777777777777776 3 333 46667777777777777664 222222222     5


Q ss_pred             ccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccc-ccccCCCCCCEEECcCCcCc
Q 038320          346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP-ESIGNLSSLRELYLHNNLMD  405 (467)
Q Consensus       346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~  405 (467)
                      |+.|++++|+++..  ..+..+++|++|++++|.+++... ..+..+++|+.|++++|++.
T Consensus        95 L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          95 LEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            77777777776642  335556666666666666653211 34566666666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2e-13  Score=117.37  Aligned_cols=114  Identities=26%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             cchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHh
Q 038320          258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR  337 (467)
Q Consensus       258 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  337 (467)
                      ++..+..+++|++|++++|.++. ++ .+..+++|++|++++|.+  ..++.....+++|+.|++++|.++..  ..+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i--~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEE--CSCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccc--cccccccccccccccccccccccccc--ccccc
Confidence            34455566666666666666653 22 355666666666666665  23333333344566666666666542  22344


Q ss_pred             hhcccCCCccEEECcCCCCCcCCC-ccccCCCCCCEEEccCCcCcc
Q 038320          338 LSKCANSSLESLDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRG  382 (467)
Q Consensus       338 ~~~~~~~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~  382 (467)
                      ++     +|+.|++++|++++... ..+..+++|++|++++|.+..
T Consensus       114 l~-----~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         114 LV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cc-----cccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            43     56666666666653311 345566666666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5e-11  Score=97.85  Aligned_cols=83  Identities=23%  Similarity=0.232  Sum_probs=40.3

Q ss_pred             CccEEECcCC-CCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeC
Q 038320          345 SLESLDLGQN-NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDI  423 (467)
Q Consensus       345 ~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  423 (467)
                      +|++|++++| .++...+..|.++++|+.|++++|+++...+..|..+++|++|+|++|+++ .+|.......+|+.|+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccccccccc
Confidence            4555555443 244444444555555555555555555444444555555555555555554 22322222334555555


Q ss_pred             cCCCC
Q 038320          424 SGNPW  428 (467)
Q Consensus       424 ~~n~~  428 (467)
                      ++|++
T Consensus       111 ~~Np~  115 (156)
T d2ifga3         111 SGNPL  115 (156)
T ss_dssp             CSSCC
T ss_pred             CCCcc
Confidence            55554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.6e-10  Score=90.26  Aligned_cols=104  Identities=24%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             EEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCC
Q 038320          222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSND-FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN  300 (467)
Q Consensus       222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  300 (467)
                      .++.+++.+... |..+..+++|++|++++++ ++...+..|.++++|+.|++++|+++...+..|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            344444444332 2234455666666665443 55444455666777777777777776665666777777777777777


Q ss_pred             CCCCCCCcccccCCCCCCEEeccCCcCC
Q 038320          301 SLIGGQIPKDLGSLCNLWDLDLSGNDLD  328 (467)
Q Consensus       301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~  328 (467)
                      ++ . .++........|+.|++++|.+.
T Consensus        91 ~l-~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 AL-E-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CC-S-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CC-c-ccChhhhccccccccccCCCccc
Confidence            76 3 33333333346777777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-07  Score=77.87  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=43.8

Q ss_pred             CCCCCEEEccCCcCccc--ccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh------hhhC
Q 038320          367 LENLKILQLWGNLFRGS--IPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE------VHFS  438 (467)
Q Consensus       367 l~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~------~~~~  438 (467)
                      +++|++|++++|+++..  ++..+..+++|+.|++++|.++...+-......+|+.|++++|++.+....      ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            44444444444444421  123344566666666666666533222223344566666777666654331      1355


Q ss_pred             CCCCCCEEeccCCCCC
Q 038320          439 KLKNLKELHIAKYSLA  454 (467)
Q Consensus       439 ~l~~L~~l~l~~n~i~  454 (467)
                      .+|+|+.||  +.++.
T Consensus       144 ~~P~L~~LD--g~~v~  157 (162)
T d1koha1         144 RFPKLLRLD--GHELP  157 (162)
T ss_dssp             TSTTCCEET--TEECC
T ss_pred             HCCCCCEEC--cCCCc
Confidence            667777664  44443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.4e-08  Score=78.34  Aligned_cols=79  Identities=29%  Similarity=0.342  Sum_probs=59.4

Q ss_pred             CCccEEECcCCCCCcC--CCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccCh-------hhhcC
Q 038320          344 SSLESLDLGQNNLGGF--LPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIP-------KSLGK  414 (467)
Q Consensus       344 ~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-------~~l~~  414 (467)
                      +.|++|++++|+|+..  ++..+..+++|+.|++++|.++...+..+....+|+.|++++|.+.+...       ..+..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            4899999999998854  23456778999999999999985433234455679999999999875433       33667


Q ss_pred             CCCCCEEe
Q 038320          415 LSHLVVLD  422 (467)
Q Consensus       415 l~~L~~L~  422 (467)
                      +|+|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            89999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=1.2e-06  Score=71.93  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=27.7

Q ss_pred             CCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCcc-------cChhhhcCCCCCCEEeCcCC
Q 038320          367 LENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDG-------TIPKSLGKLSHLVVLDISGN  426 (467)
Q Consensus       367 l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~-------~~p~~l~~l~~L~~L~l~~n  426 (467)
                      .+.|++|++++|.+++.    +...+...++|++|++++|.+..       .+.+.+...++|+.|+++.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34444444444444422    12233444555555555553321       13344445556666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=1.1e-06  Score=72.03  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=73.9

Q ss_pred             CccEEECcCC-CCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----Chhh
Q 038320          345 SLESLDLGQN-NLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT----IPKS  411 (467)
Q Consensus       345 ~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~  411 (467)
                      +|++|+|+++ .++..    +...+...+.|++|++++|.+...    +...+...+.|++|++++|.+++.    +...
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            5666666553 34322    223455667788888888877643    233455678999999999999865    4456


Q ss_pred             hcCCCCCCEEeCcCCCCccc-------CChhhhCCCCCCCEEeccCCC
Q 038320          412 LGKLSHLVVLDISGNPWIGL-------VTEVHFSKLKNLKELHIAKYS  452 (467)
Q Consensus       412 l~~l~~L~~L~l~~n~~~~~-------~~~~~~~~l~~L~~l~l~~n~  452 (467)
                      +...++|++|++++|.....       +.. .+...++|+.|+++.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~-~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS  142 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHH-HHHhCCCccEeeCcCCC
Confidence            77889999999999865421       222 45667899999998874

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.72  E-value=1.2e-05  Score=65.61  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=33.5

Q ss_pred             hCCCCCCEEeCCCC-CCCCCC----CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC
Q 038320          287 ANMTSLRELDLSEN-SLIGGQ----IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG  357 (467)
Q Consensus       287 ~~l~~L~~L~L~~n-~l~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~  357 (467)
                      .+.++|++|+++++ .+ +..    +...+...+.|+.|++++|.++......+...... .++++.+++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i-~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCC-CHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhcccccc
Confidence            45566666666653 33 221    12234455666666666666655544444333211 124555555544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.63  E-value=8.7e-06  Score=66.49  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             cCCCCCCEEeccC-CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc---
Q 038320          312 GSLCNLWDLDLSG-NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS---  383 (467)
Q Consensus       312 ~~l~~L~~L~l~~-n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~---  383 (467)
                      .+.+.|++|++++ +.++......+..... ..+.|++|++++|.++..    +...+...+.++.+++++|.+.+.   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3456777777766 4455444433333221 223677777777766543    222344556677777777766532   


Q ss_pred             -ccccccCCCCCCEEEC--cCCcCccc----ChhhhcCCCCCCEEeCcCCC
Q 038320          384 -IPESIGNLSSLRELYL--HNNLMDGT----IPKSLGKLSHLVVLDISGNP  427 (467)
Q Consensus       384 -~~~~l~~~~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~l~~n~  427 (467)
                       +...+...++|+.++|  ++|.+.+.    +...+...++|+.|+++.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             2234455666766544  34555432    44555567777777776654