Citrus Sinensis ID: 038342

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
MATKSEASLNLDLLHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLAVESDDFDEDLDDGLDDDDDDDDDDDEEEEEEEEVEGSEGEEEKKGKGGPEGGIEDEFLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNEEDEDEDEDEDEEDEDEEELGVFGDSDDNEEEDEHRQKLENAGYEDFFGKLEEDSGLDDEEDEDEAVETKKNDNLSTHEKQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSKKGLAEVYEEEYVQKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGRGDVKEEAELTKAERKRRRASKKRKFKAEATKRMTAKKARDNTLLNDNDGDYLIFS
ccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcc
cccHHHHHHHHHHHHHHHHccccHcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccHccccccccHHHcccccccccccccccccHHHHHHHccccccccccccccccccccccHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHcccccHHHcccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHccccHccccccccEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccHEEHHHccccccccHHHcccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEc
MATKSEASLNLDLLHRlksteppvwlapraeLSETARKASKIIFSYlrpyapkspldqllieGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLavesddfdedlddgldddddddddddeeeeeeeevegsegeeekkgkggpeggiedEFLKINELQEYLEEDEAReyglkkdsndsrkkggrrvldneedededededeededeeelgvfgdsddneeeDEHRQKLEnagyedffgkleedsglddeededeavetkkndnlsthEKQSEQLRAEIEKMEkanldpktwtmqgevtaaqrpknsalevdldfqhnvrpapvitEEFTASLEEMIKKRIIEgqfddvekaaslpskaprelkeldenkskkGLAEVYEEEyvqktnpaaapltfsdEQKKEASMLFKKLCLKLDalshfhftpkpviedmsiqanvpalameeiapvavsdaamlapeevfagrgdvkeeAELTKAERKRRRASKKRKFKAEATKRMTAKKardntllndndgdylifs
MATKSEASLNLDLLhrlksteppvwlapraelSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREvkkfekkpeeigkirevlegekkvvesvgkvlegerrvlavesddfdedlddgldddddDDDDDDEEeeeeeevegsegeeekkgkggpeggiedeFLKINELQEYLEedeareyglkkdsndsrkkggrrvldneedededededeededeeelgvfgdsddneeEDEHRQKlenagyedfFGKLEEDSGLDDEEDEDEAvetkkndnlsthekqSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAaslpskaprelkeldenkskKGLAEVYEeeyvqktnpaaapltFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEevfagrgdvkeeaeltkaerkrrraskkrkfkaeatkrmtakkardntllndndgdylifs
MATKSEASLNLDLLHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIGKIRevlegekkvvesvgkvlegeRRVLAVesddfdedlddgldddddddddddeeeeeeeevegsegeeekkgkggpeggiedeFLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNeedededededeededeeeLGVFGDSDDNEEEDEHRQKLENAGYEDFFGKLeedsglddeededeaveTKKNDNLSTHEKQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSKKGLAEVYEEEYVQKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGRGDVKEEAELTkaerkrrraskkrkfkaeaTKRMTAKKARDNTLLNDNDGDYLIFS
***********************VWLAP********RKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQ**************************************************************************************************************************************************************************************************************************************************************************VDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEG*************************************************************MLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLA***************************************************************
*****************KSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKRE*************************************************************************************************LKINELQEY*****************************************************************************************************************************LDP**WT**********P**SALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDV********************************************************MLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVA****************************************************************GDYLIFS
MATKSEASLNLDLLHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLAVESDDFDEDLDDGLD**********************************EGGIEDEFLKINELQEYLEEDEAREYGLK**************************************VFGDS***********KLENAGYEDFFGKLEE******************************QLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSKKGLAEVYEEEYVQKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGRGDVKE*******************************KARDNTLLNDNDGDYLIFS
*******SLNLDLLHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIG******************************************************************************GGIEDEFLKINELQEYLEEDEA*****************************************************************************************************EKQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAA********ELKELDENKSKKGLAEVYEEEYVQKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGR*****************************************TLLNDNDGDYLIFS
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MATKSEASLNLDLLHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLAVESDDFDEDLDDGLDDDDDDDDDDDEEEEEEEEVEGSEGEEEKKGKGGPEGGIEDEFLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNEEDEDEDEDEDEEDEDEEELGVFGDSDDNEEEDEHRQKLENAGYEDFFGKLEEDSGLDDEEDEDEAVETKKNDNxxxxxxxxxxxxxxxxxxxxxxxxPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSKKGLAEVYEEEYVQKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGRGDVKEEAELTKAERKRRRASKKRKFKAEATKRMTAKKARDNTLLNDNDGDYLIFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query553 2.2.26 [Sep-21-2011]
O00566681 U3 small nucleolar ribonu yes no 0.443 0.359 0.427 6e-43
Q810V0681 U3 small nucleolar ribonu yes no 0.426 0.346 0.432 2e-42
P47083593 U3 small nucleolar RNA-as yes no 0.705 0.657 0.293 6e-39
O13910598 U3 small nucleolar ribonu yes no 0.424 0.392 0.390 4e-36
>sp|O00566|MPP10_HUMAN U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2 Back     alignment and function desciption
 Score =  176 bits (445), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/274 (42%), Positives = 162/274 (59%), Gaps = 29/274 (10%)

Query: 247 DSDDNEEEDEHRQKLENAGYEDFFGKLEEDSGLDDEEDEDEAV-ETKKNDN--LSTHEKQ 303
           D  +NE+  +H++ L+   +          +  DD E ED  V   KKN +   S+ EK+
Sbjct: 314 DLQENEDNKQHKESLKRVTF----------ALPDDAETEDTGVLNVKKNSDEVKSSFEKR 363

Query: 304 SEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTA 363
            E++  +I  +EK  L+ K W +QGEVTA +RP+NS LE  L F H VR APVITEE T 
Sbjct: 364 QEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTL 423

Query: 364 SLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKE---LDENKSKKGLAEVYEEEYV---- 416
            LE++IK+RI +  +DDV +    P +   E K+   LD  KSK  LAE+YE+EY+    
Sbjct: 424 QLEDIIKQRIRDQAWDDVVRKEK-PKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQ 482

Query: 417 QKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAME 476
           QKT     P      +  E   +   L LKLDALS+FHF PKP + ++ + +N+PA+ ME
Sbjct: 483 QKTAEEENP------EHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITME 536

Query: 477 EIAPVAVSDAAMLAPEEVFAGR--GDVKEEAELT 508
           E+APV+VSDAA+LAPEE+      GD+K  AE T
Sbjct: 537 EVAPVSVSDAALLAPEEIKEKNKAGDIKTAAEKT 570
Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.
Homo sapiens (taxid: 9606)
>sp|Q810V0|MPP10_MOUSE U3 small nucleolar ribonucleoprotein protein MPP10 OS=Mus musculus GN=Mphosph10 PE=1 SV=2 Back     alignment and function description
>sp|P47083|MPP10_YEAST U3 small nucleolar RNA-associated protein MPP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MPP10 PE=1 SV=1 Back     alignment and function description
>sp|O13910|MPP10_SCHPO U3 small nucleolar ribonucleoprotein protein mpp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpp10 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
359491237533 PREDICTED: uncharacterized protein LOC10 0.933 0.968 0.627 1e-156
224133578554 predicted protein [Populus trichocarpa] 0.931 0.929 0.608 1e-152
449440562538 PREDICTED: U3 small nucleolar ribonucleo 0.909 0.934 0.578 1e-137
297733762470 unnamed protein product [Vitis vinifera] 0.820 0.965 0.537 1e-136
297794351522 hypothetical protein ARALYDRAFT_496951 [ 0.934 0.990 0.564 1e-131
18425086524 uncharacterized protein [Arabidopsis tha 0.882 0.931 0.573 1e-125
255540633533 U3 small nucleolar ribonucleoprotein pro 0.650 0.675 0.716 1e-119
224119382506 predicted protein [Populus trichocarpa] 0.571 0.624 0.668 1e-112
356562720516 PREDICTED: uncharacterized protein LOC10 0.509 0.546 0.707 1e-112
224029253539 unknown [Zea mays] gi|238013204|gb|ACR37 0.867 0.890 0.495 1e-107
>gi|359491237|ref|XP_003634246.1| PREDICTED: uncharacterized protein LOC100241507 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 345/550 (62%), Positives = 432/550 (78%), Gaps = 34/550 (6%)

Query: 11  LDLLHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGFDAEQIW 70
           +D +HRLKSTEPP+WL+P +ELS+TAR AS+ +F+ L+P+APKSP D+LL++GFDAEQIW
Sbjct: 1   MDTVHRLKSTEPPLWLSPSSELSQTARAASQHLFASLKPFAPKSPFDRLLVDGFDAEQIW 60

Query: 71  QQIDLQSQPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLAVES 130
           QQID+QSQP++SSL+R++ +FEK PEEI KI     G KKV     KV E E++V   E 
Sbjct: 61  QQIDIQSQPIISSLRRQINRFEKNPEEISKIF----GRKKVRRVEEKVREVEQKVPEEEI 116

Query: 131 DDFDEDLDDGLDDDDDDDDDDDEEEEEEEEVEGSEGEEEKKGKGGPEGGIEDEFLKINEL 190
             F E+ D+ L++ D+D ++ ++EE E EE E  + E+   G       IED FLKI  L
Sbjct: 117 GGFSEEEDEDLEEFDEDSEEGEDEERESEEDEAEDNEDGGGGG------IEDRFLKIKGL 170

Query: 191 QEYLEEDEAREYGLKKDSNDSRKKGGRRVL-DNEEDEDEDEDEDEEDEDEEELGVFGDSD 249
           +EYLE +E REYGLK       KKGG   L D E++ +++E+E+EE+E+++ELG F D D
Sbjct: 171 EEYLEAEEDREYGLKN------KKGGSDALKDGEDENEDEEEEEEEEEEDDELGAF-DLD 223

Query: 250 DNEEEDEHRQKLENAGYEDFFG---------KLE---EDSGLDDEEDEDEAVETKKNDNL 297
           D E  +E   +L++  YEDFFG         KL    EDS   DE+++D+A + K N  L
Sbjct: 224 DGE--NEGMDELDDIKYEDFFGPKRKVSKKSKLTDGLEDSDRSDEQEDDQATDNK-NKVL 280

Query: 298 STHEKQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVI 357
           STHEK+ E +RA+IE+ME+ANL+ KTWTMQGEVTAA+RPKNSALEVDLDF+HNVRP PVI
Sbjct: 281 STHEKERENVRAKIEEMERANLESKTWTMQGEVTAAKRPKNSALEVDLDFEHNVRPPPVI 340

Query: 358 TEEFTASLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSKKGLAEVYEEEYVQ 417
           TEE TASLE++I+KRI+EG+FDDV+KA  LPSKAP+E+KE+DENKSKKGLAE+YEEE+VQ
Sbjct: 341 TEEVTASLEDLIQKRILEGRFDDVQKAPRLPSKAPKEVKEMDENKSKKGLAEIYEEEFVQ 400

Query: 418 KTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEE 477
           KTN  +APL+FSDEQ+KEASMLFKKLCLKLDALSHFHFTPKPVI+DMSIQ NVPALAMEE
Sbjct: 401 KTNLDSAPLSFSDEQRKEASMLFKKLCLKLDALSHFHFTPKPVIDDMSIQTNVPALAMEE 460

Query: 478 IAPVAVSDAAMLAPEEVFAGRGDVKEEAELTKAERKRRRASKKRKFKAEATKRMTAKKAR 537
           IAP+AVSDAAMLAPEEVF G+GD+KEEAELT+AERKRRRA+KKRKFKA  TKR  AKKA+
Sbjct: 461 IAPLAVSDAAMLAPEEVFEGKGDIKEEAELTQAERKRRRANKKRKFKANTTKR-AAKKAQ 519

Query: 538 DNTLLNDNDG 547
           D TL N+ +G
Sbjct: 520 DGTLQNNKEG 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133578|ref|XP_002321609.1| predicted protein [Populus trichocarpa] gi|222868605|gb|EEF05736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440562|ref|XP_004138053.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein mpp10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297733762|emb|CBI15009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297794351|ref|XP_002865060.1| hypothetical protein ARALYDRAFT_496951 [Arabidopsis lyrata subsp. lyrata] gi|297310895|gb|EFH41319.1| hypothetical protein ARALYDRAFT_496951 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18425086|ref|NP_569037.1| uncharacterized protein [Arabidopsis thaliana] gi|14488063|gb|AAK63852.1|AF389279_1 AT5g66540/K1F13_21 [Arabidopsis thaliana] gi|10177535|dbj|BAB10930.1| unnamed protein product [Arabidopsis thaliana] gi|23506141|gb|AAN31082.1| At5g66540/K1F13_21 [Arabidopsis thaliana] gi|332010844|gb|AED98227.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255540633|ref|XP_002511381.1| U3 small nucleolar ribonucleoprotein protein mpp10, putative [Ricinus communis] gi|223550496|gb|EEF51983.1| U3 small nucleolar ribonucleoprotein protein mpp10, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224119382|ref|XP_002318058.1| predicted protein [Populus trichocarpa] gi|222858731|gb|EEE96278.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562720|ref|XP_003549617.1| PREDICTED: uncharacterized protein LOC100781093 [Glycine max] Back     alignment and taxonomy information
>gi|224029253|gb|ACN33702.1| unknown [Zea mays] gi|238013204|gb|ACR37637.1| unknown [Zea mays] gi|413946164|gb|AFW78813.1| hypothetical protein ZEAMMB73_662689 [Zea mays] gi|413946165|gb|AFW78814.1| hypothetical protein ZEAMMB73_662689 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
TAIR|locus:2154885524 AT5G66540 "AT5G66540" [Arabido 0.569 0.601 0.602 3.5e-122
UNIPROTKB|O00566681 MPHOSPH10 "U3 small nucleolar 0.462 0.375 0.402 5.9e-59
RGD|1307633676 Mphosph10 "M-phase phosphoprot 0.468 0.383 0.421 2.8e-58
UNIPROTKB|E2RF17676 MPHOSPH10 "Uncharacterized pro 0.386 0.316 0.475 3.2e-58
ZFIN|ZDB-GENE-030131-2146695 mphosph10 "M-phase phosphoprot 0.385 0.306 0.438 6.8e-57
UNIPROTKB|F1SNQ9680 MPHOSPH10 "Uncharacterized pro 0.386 0.314 0.457 3.1e-56
MGI|MGI:1915223681 Mphosph10 "M-phase phosphoprot 0.459 0.372 0.414 4.9e-56
UNIPROTKB|F1MQV1686 MPHOSPH10 "Uncharacterized pro 0.386 0.311 0.461 2.6e-55
UNIPROTKB|F1NC78670 MPHOSPH10 "Uncharacterized pro 0.376 0.310 0.464 3.8e-52
POMBASE|SPAC23C11.03598 SPAC23C11.03 "U3 snoRNP-associ 0.385 0.356 0.418 9.3e-51
TAIR|locus:2154885 AT5G66540 "AT5G66540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 927 (331.4 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
 Identities = 197/327 (60%), Positives = 229/327 (70%)

Query:   184 FLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNXXXXXXXXXXXXXXXXXXXLG 243
             F KI EL+E+LEE EA EYG+    +   KKG  +                         
Sbjct:   173 FFKIKELEEFLEEGEAEEYGI----DHKNKKGVAQRKKQNLSDDEDEEDDDDEEEDVEFD 228

Query:   244 VFGDSDDNEEEDEHRQKLENAGYEDFFG--KLXXXXXXXXXXXXXXXXXTKKNDNLSTHE 301
              F   DD EE D    KL  A Y+DFFG  K                   K N+ LSTHE
Sbjct:   229 AFAGGDD-EETD----KLGKARYDDFFGGKKETKMKLKDLSEDEEAEIENKGNEKLSTHE 283

Query:   302 KQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEF 361
             +   +L+++IE+MEKANLDPK WTMQGE+TAA+RP NSALEVDLDF+HN RPAPVITEE 
Sbjct:   284 RARLKLQSKIEQMEKANLDPKHWTMQGEITAAKRPMNSALEVDLDFEHNARPAPVITEEV 343

Query:   362 TASLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSKKGLAEVYEEEYVQKTNP 421
             TASLE++IK RIIE +FDDV++A  LP+K  RE KELDE+KSKKGLAEVYE EY QK NP
Sbjct:   344 TASLEDLIKSRIIEARFDDVQRAPRLPTKGKREAKELDESKSKKGLAEVYEAEYFQKANP 403

Query:   422 AAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPV 481
             A AP T SDE KKEASMLFKKLCLKLDALSHFHFTPKPVIE+MSI  NV A+AMEE+APV
Sbjct:   404 AFAPTTHSDELKKEASMLFKKLCLKLDALSHFHFTPKPVIEEMSIP-NVSAIAMEEVAPV 462

Query:   482 AVSDAAMLAPEEVFAGRGDVKEEAELT 508
             AVSDAAMLAPEE+F+G+GD+K+E+ELT
Sbjct:   463 AVSDAAMLAPEEIFSGKGDIKDESELT 489
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006364 "rRNA processing" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006606 "protein import into nucleus" evidence=RCA
UNIPROTKB|O00566 MPHOSPH10 "U3 small nucleolar ribonucleoprotein protein MPP10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307633 Mphosph10 "M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RF17 MPHOSPH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2146 mphosph10 "M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNQ9 MPHOSPH10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1915223 Mphosph10 "M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQV1 MPHOSPH10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NC78 MPHOSPH10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPAC23C11.03 SPAC23C11.03 "U3 snoRNP-associated protein Mpp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
pfam04006613 pfam04006, Mpp10, Mpp10 protein 2e-82
COG5384569 COG5384, Mpp10, U3 small nucleolar ribonucleoprote 2e-43
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 4e-08
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 2e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 8e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 8e-07
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 1e-06
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 6e-06
pfam04147 809 pfam04147, Nop14, Nop14-like family 9e-06
pfam04147 809 pfam04147, Nop14, Nop14-like family 1e-05
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 2e-05
pfam04615728 pfam04615, Utp14, Utp14 protein 2e-05
pfam05793528 pfam05793, TFIIF_alpha, Transcription initiation f 3e-05
PTZ00415 2849 PTZ00415, PTZ00415, transmission-blocking target a 6e-05
pfam07093557 pfam07093, SGT1, SGT1 protein 9e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 2e-04
COG5192 1077 COG5192, BMS1, GTP-binding protein required for 40 2e-04
PRK05901509 PRK05901, PRK05901, RNA polymerase sigma factor; P 2e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
pfam06524314 pfam06524, NOA36, NOA36 protein 6e-04
COG4547620 COG4547, CobT, Cobalamin biosynthesis protein CobT 7e-04
PRK05901509 PRK05901, PRK05901, RNA polymerase sigma factor; P 9e-04
PTZ00415 2849 PTZ00415, PTZ00415, transmission-blocking target a 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 0.002
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 0.002
pfam05327554 pfam05327, RRN3, RNA polymerase I specific transcr 0.003
pfam02724 583 pfam02724, CDC45, CDC45-like protein 0.003
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein Back     alignment and domain information 
 Score =  269 bits (688), Expect = 2e-82
 Identities = 206/577 (35%), Positives = 315/577 (54%), Gaps = 60/577 (10%)

Query: 21  EPPVWLAPRAELSETARKASKI---IFSYLRPYAPKSPLDQLLIEGFDAEQIWQQIDLQS 77
           +P  +L P+++ SE   +  +    +F  L+P   KSPLD+L+++G DAEQIWQQ+ LQ+
Sbjct: 8   DPTKFLKPQSKFSEDITQLIQNVYEVFIKLKPSNKKSPLDELVVDGLDAEQIWQQLKLQN 67

Query: 78  QPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLAVESDDFDEDL 137
           +P+L  L ++  +F    E I  + ++ + E     S G  ++ E      E ++ DE L
Sbjct: 68  KPILDDLNQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESL 127

Query: 138 DDGLDDDDDDDDDDDEEEEEEEEVEGSEGEEE--------------------KKGKGGPE 177
           +D + DD+D+ D  +E E   E++   E E++                     + K   +
Sbjct: 128 EDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDK 187

Query: 178 GGIEDEFLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNEEDEDEDEDEDEEDE 237
            G++D+F K++E+ E+LE  EA E     D +D          D ++DED    EDEED+
Sbjct: 188 SGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDD 247

Query: 238 DEE--------------ELGVFGDSDDNEEEDEHRQKLENAGYEDFFGKLEEDSGLDDEE 283
           +E               +    GD  + E+++  ++ ++         + EED   +D++
Sbjct: 248 EEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQ 307

Query: 284 DEDEA-----------------VETKKNDNLSTHEKQSEQLRAEIEKMEKANLDPKTWTM 326
           DE+E                  V+ +    LS+ EK+  +L+ +IE++EK NL PK+WT+
Sbjct: 308 DEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKRQAKLKQQIEQLEKENLAPKSWTL 367

Query: 327 QGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAAS 386
           +GEVTA +RP+NS LE DLDF H  +PAPVITEE T SLE++IK+RI +  FDDV++   
Sbjct: 368 KGEVTAKKRPQNSLLEEDLDFDHGAKPAPVITEEVTESLEDLIKQRIRDKAFDDVQRRKK 427

Query: 387 LPSKA--PRELKELDENKSKKGLAEVYEEEYVQKTNPAAAPL---TFSDEQKKEASMLFK 441
           + +     RE  ELDE KSKK LAE+YE EY +K N +          +++ +E   L  
Sbjct: 428 VEATGKEYREQFELDEEKSKKSLAEIYEAEYQRKENESLDGAAGAEKENKEHEEIKSLMG 487

Query: 442 KLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGRGDV 501
            L LKLDALS FHF PKP  E++ I +N PA+AMEE+AP AVSDAA+LAPEE++     +
Sbjct: 488 SLFLKLDALSSFHFVPKPAREEVKIVSNTPAIAMEEVAPTAVSDAALLAPEEIYKKMKAI 547

Query: 502 -KEEAELTKAERKRRRASKKRKFKAEATKRMTAKKAR 537
            K + EL + ++ R R  KKRK +A       AKK R
Sbjct: 548 EKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKER 584

This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Back     alignment and domain information
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional Back     alignment and domain information
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 553
PF04006600 Mpp10: Mpp10 protein; InterPro: IPR007151 This fam 100.0
KOG2600596 consensus U3 small nucleolar ribonucleoprotein (sn 100.0
COG5384569 Mpp10 U3 small nucleolar ribonucleoprotein compone 100.0
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10) Back     alignment and domain information 
Probab=100.00  E-value=2.3e-107  Score=894.19  Aligned_cols=483  Identities=42%  Similarity=0.702  Sum_probs=337.4

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHHHHHhcCCC---CCCCCCchhhhcCCChHHHHHHHHhhhhhhHHHHHHHHH---H
Q 038342           17 LKSTEPPVWLAPRAELSETARKASKIIFSYLRPY---APKSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVK---K   90 (553)
Q Consensus        17 l~~~~Pe~FLspq~ela~~~~sltK~LYd~~k~~---~~~spL~ELvvegFD~EQIWQQLELqN~plL~~l~~~v~---~   90 (553)
                      .++++|++||++++.||..+++++|++|...+..   .+++||++|||+|||.+||||||+|+|.|++.+|.+.+.   .
T Consensus         4 ~~~~~P~~fl~~~~~la~~~~~~~k~~~~~~~~~~~~~~~~~L~eL~vdGFD~eQIWqQl~l~~~~v~~~L~~~~~~~~~   83 (600)
T PF04006_consen    4 KLSKNPENFLSPQDSLAQDARSLIKNLYDLFKKEPSSKEKSPLDELYVDGFDAEQIWQQLELVNDPVLQELEKKIVELLR   83 (600)
T ss_pred             hhccCchhhcCcCHHHHHHHHHHHHHHHHHHhhcccccCCCcchhhccCCCChHHHHHHHHHHhhHhHHHHHHHHHHhhh
Confidence            4689999999999999999999999988776533   335899999999999999999999999999999999443   2


Q ss_pred             HhcCcccchhhhhhhhccchhhcccccchhhhhhhhcccCCCcccc---cCCC------CCCC--CCCCCCC-cchhhhH
Q 038342           91 FEKKPEEIGKIREVLEGEKKVVESVGKVLEGERRVLAVESDDFDED---LDDG------LDDD--DDDDDDD-DEEEEEE  158 (553)
Q Consensus        91 ~~~~~~~~~l~~e~~~~~~~~~~~~~~~~e~~~~~~~~e~~~e~e~---~~~e------~ee~--~~~~~~d-~~~e~~e  158 (553)
                      ++..+..+..+.+.    .......++.+..+. ++..+.+..+++   ++.+      ..+.  ++.++.. .+..+++
T Consensus        84 ~~~~~~~l~~~~~~----~~~~~~ed~~d~~d~-d~~~e~d~~eeeee~Ee~d~~~e~d~~~~~e~d~ed~~d~e~ed~e  158 (600)
T PF04006_consen   84 EVQNDEELSSSDEE----DEEEESEDDEDEEDE-DEEEESDDDEEEEEDEEEDMIDEEDEEDEDESDEEDEEDEEEEDEE  158 (600)
T ss_pred             hccCcccccccccc----ccccccccccccccc-cccccccccccccccccccccccccchhhccccccccccchhhccc
Confidence            23333334332110    100111110000000 000000000000   0000      0000  0000000 0000000


Q ss_pred             hhhcCCch---hhh-hcCCCCCCCCccccccChHHHHHHHHHHHHHHhcCCCCCchhhhcCCCccCCCCCCCCccccCCc
Q 038342          159 EEVEGSEG---EEE-KKGKGGPEGGIEDEFLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNEEDEDEDEDEDE  234 (553)
Q Consensus       159 ~e~~~~~~---~~e-~~~k~~~~s~VdD~FFkL~eme~fLe~~e~~e~~~~~~~~~~k~~~~~~~~~~~~~~~dd~~~~~  234 (553)
                      ........   ... ...++..+++|||+||+|++|++||+.+|+++++...                  +.+++++...
T Consensus       159 ~~~~~e~~~~~~~~~~~~~~~d~~glnD~FFsidEfnk~~e~~E~~e~~~~~------------------d~d~eeD~~~  220 (600)
T PF04006_consen  159 EEEEDEESEESSEEEEEEKKEDKSGLNDGFFSIDEFNKQLEEEERQEEGRDD------------------DEDDEEDEDI  220 (600)
T ss_pred             ccccchhhhhccccccccccccCCCcCCCcCCHHHHHHHHHHHHHHhhcccc------------------cccccccccc
Confidence            00000000   000 1223445788999999999999999999998766211                  0000000000


Q ss_pred             ccchhhhccCCCCCCCchhhHHHhhhhccCCcccccCCcccCCC-------------------------CCCch---h-h
Q 038342          235 EDEDEEELGVFGDSDDNEEEDEHRQKLENAGYEDFFGKLEEDSG-------------------------LDDEE---D-E  285 (553)
Q Consensus       235 e~~d~~d~d~f~d~~~~~~~~~~~~~~~~~~Y~DFF~~~~~~~~-------------------------~~de~---~-e  285 (553)
                      +..+ +..++|...+++++     ....+++|.|||+++.+..+                         ..+++   + .
T Consensus       221 D~~~-d~~dD~~~~~~~~~-----~~~~~~~Y~DFFd~~~kd~~~d~e~~~~~~~~~~~~~~~d~~~~~~~~~d~~~e~~  294 (600)
T PF04006_consen  221 DDDE-DEEDDFGDDDDEDD-----EDEDDIKYEDFFDPKDKDNGDDDESDDDEDDEEADEKEGDEDDEEEDEEDDEEEED  294 (600)
T ss_pred             cccc-cccccccccccccc-----cchhhhhhcccccccccccccccccccccccchhhhhhcccccccchhhhhhhhhh
Confidence            0000 00001221111111     45568999999999621000                         00000   0 0


Q ss_pred             ----HHH---------hhh-------hcCCCCChHHHHHHHHHHHHHHHHHhcCCCCCcccccccccCCCCCcccccccc
Q 038342          286 ----DEA---------VET-------KKNDNLSTHEKQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDL  345 (553)
Q Consensus       286 ----~e~---------~~~-------~~~~~~S~~ekrq~kl~~~I~~LE~e~v~~K~W~L~GEv~a~~RP~NSLLEedL  345 (553)
                          +..         +..       .....+|+|++||++|+++|++||++||++|+|+|+|||+|+.||+||||+++|
T Consensus       295 ~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~S~~ek~q~~l~~~I~~lE~~~~~~k~W~l~GE~~a~~Rp~nSLLee~l  374 (600)
T PF04006_consen  295 EDEEEEDEDAMDDVEDDESEEDDEDEEEDEELSTFEKRQEKLQKQIEELEKENVAEKPWQLKGEVSARDRPENSLLEEDL  374 (600)
T ss_pred             hhhhhhhhcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccccCCccchhccCc
Confidence                000         000       235569999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCcchhhhhhHHHHHHHHhhhCCCCccccccCCCC--CCccccccccccccchhHHHHHHHHHHhhhCCCC
Q 038342          346 DFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAASLPS--KAPRELKELDENKSKKGLAEVYEEEYVQKTNPAA  423 (553)
Q Consensus       346 dFe~~~kpaPvITEE~T~~LEdiIKqRI~d~~FDDV~rk~~~~~--~~~~~~~eLd~eKSK~sLaEiYE~eY~k~~~~~~  423 (553)
                      +|+|++||+||||+++|.+||+||||||++++||||+|+.++..  ..++..++|+++|||+|||+|||++|++++.++.
T Consensus       375 ~fe~~~k~~pvit~e~t~~lE~~Ik~RI~~~~fDdv~r~~~~~~~~~~~~~~~el~~~Ksk~sLaeiYe~ey~~~~~~~~  454 (600)
T PF04006_consen  375 DFERTAKPVPVITEEVTESLEDLIKQRIKDQNFDDVVRRRPPDEEPFEYKKRVELDDEKSKKSLAEIYEQEYLKQTDGAF  454 (600)
T ss_pred             cccccCCCCCCCCHHHHHHHHHHHHHHHHhccccccccccCCCccccccccccccccccccccHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999987654  4678889999999999999999999999987643


Q ss_pred             -CCCCCChHHHHHHHHHHHHHHHHHhhhccCCcCCCCCcccccccccCcccccccccccccccccccCChhhccC-CCCC
Q 038342          424 -APLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAG-RGDV  501 (553)
Q Consensus       424 -~~~~~~d~~k~EI~~lf~~L~~kLDaLSn~hFtPKp~~~e~~i~~n~pai~mEEv~PvavS~a~~lAPEEV~~~-~g~~  501 (553)
                       ....+.+++|.||..||+.||+|||||||||||||||+++++|++|+|||+||+|+||+||+|++|||||||++ ++..
T Consensus       455 ~~~~~~~~~~~~ei~~l~~~l~~kLDaLsn~hf~Pk~~~~~~~v~~~~~ai~mEe~~p~~~s~~~~lAPeEi~~~~~~~~  534 (600)
T PF04006_consen  455 DEKDEKLDKEHEEIKELFKKLCYKLDALSNFHFTPKPPQPEIKVVSNVPAISMEEAQPVAVSDASLLAPEEIYKPGKAKL  534 (600)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHhhccccCCcCCCCCccccccccCCccceecccccceechhhhcchHhhcccccccc
Confidence             33456778999999999999999999999999999999999999999999999999999999999999999985 3443


Q ss_pred             -cccccCCHHHHHHHHHhHHHHhHHHHh
Q 038342          502 -KEEAELTKAERKRRRASKKRKFKAEAT  528 (553)
Q Consensus       502 -k~~~E~T~~erkr~Rr~KK~k~k~~~~  528 (553)
                       +++.|||+++|+|+||++|+++|+..+
T Consensus       535 ~~~~~E~t~~ek~r~Rr~~K~~~~~~~k  562 (600)
T PF04006_consen  535 EKGKEEMTREEKKRLRRKKKRKRRKEKK  562 (600)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHh
Confidence             899999999999999999988877443

The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
>KOG2600 consensus U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p [RNA processing and modification] Back     alignment and domain information
>COG5384 Mpp10 U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-04
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 6e-04
2a6h_F423 RNA polymerase sigma factor RPOD; RNA polymerase h 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 71/520 (13%), Positives = 154/520 (29%), Gaps = 131/520 (25%)

Query: 11  LDLLHR-LKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSPLDQLLIEGF--DAE 67
            D+    L   E    +  +  +S T R     +F  L     +  + + + E    + +
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLR-----LFWTLLSK-QEEMVQKFVEEVLRINYK 92

Query: 68  QIWQQIDLQS-QPLL---------SSLKREVKKFEK----KPEEIGKIREVLEGEKKVVE 113
            +   I  +  QP +           L  + + F K    + +   K+R+ L  E +  +
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAK 151

Query: 114 SVGKVLEGE----RRVLAVE---SDDFDEDLDDG-----LDDDDDDDDDDDEEEEEEEEV 161
           +V  +++G     +  +A++   S      +D       L + +  +   +  ++   ++
Sbjct: 152 NV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 162 EGSEGEEEKKGKGGPEGGIEDEFLKINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLD 221
           + +                    L+I+ +Q  L     R     K   +        VL 
Sbjct: 210 DPNWTSRSDHSSNIK--------LRIHSIQAEL-----RRLLKSKPYENC-----LLVLL 251

Query: 222 NEEDEDEDED-----------EDEEDEDEEELGVFGDSDDNEEEDEHRQKLENAGYEDFF 270
           N ++                   ++  D     +   +  +   D H   L     +   
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 271 GKLEEDSGLDDEEDEDEAVET----------KKNDNLSTHEK----QSEQLRAEIEKMEK 316
            K         ++   E + T             D L+T +       ++L   IE    
Sbjct: 308 LKY---LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSL 363

Query: 317 ANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVR-PAPVI--------TEEFTASLEE 367
             L+P             R     L V   F  +   P  ++          +    + +
Sbjct: 364 NVLEPAE----------YRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 368 MIKKRIIEGQFDDVEKAASLPSKAPRELKELDENKSK-KGLAEVYEEEYVQKTNPAAAPL 426
           + K  ++E Q    E   S+PS       +L+   +  + + + Y       ++    P 
Sbjct: 411 LHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 427 T-----------FSDEQKKEASMLFKKLCLKLDALSHFHF 455
                         + +  E   LF+ +   LD    F F
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVF--LD----FRF 502
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H Length = 423 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00