Citrus Sinensis ID: 038350

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
MTTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHccccHHHHHHHHHHccccccccccccccEEEEEccccccccccHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccEEEEEEEccEEEccccccccccccEEEEEEEEEcccHHHHHHHccccccEEEEEEEEEEEEEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEccEEcEEEEccccccEEEEEEEEEccccccccccHHHHcccccccEEEEEEccEEEEEEcccccccccccccccccEEEEEEccccccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccHHEcccHHHHHHHHcccEcccccccccHHHcEEEEEEEEccHHHHHHHHHccccHHEEEEEEcccccEEEEEEEccccEEEEEEcccccccEEEEEcccEEEEEEccccccEEEEcccccEEEEEEEEEcccccccHHHHHHHHHcccccEEEEEcHHHHHHHHHccccccccccccccEEEEEEEEcccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccHccccEEEEEEEcccccHHHHHHHHHHHHHcHHHEEEEEEccccccccHHHHHHHHHHHcccccccEEEEEc
Coil and Loop (DISEMBL)
mttntdplsdfhdDLIIVIITFLPFIDAYRLCMSkkkwydrslWLHCRSFelheasfmmpdsRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELsldfsdgdpvvpqptlrnpqyvlphffyEQGMCIRVLNinscglglcnfvnFIQLTSLALTRVRLSWAAMENIahncpfletlSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYagkmvpfdmrgmddLEVVVLDYRldtrysyngddieslfnpfsdarILQVSTSAlkifptecllcgrqLFQFWQLEHLTLNTGLERFELAAIICLLIsspnittlaistgaimhtpdfrpnyfplsrgeiwttngsildhlecvqfegftgkicEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASggvvinws
Flexible Loop (DISEMBL)
mttntdplsdfhdDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQavaasggvvinws
Low Complexity Region (SEG)
MTTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS
Disordered region (IsUnstruct)
**********FHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVIN**
Disordered Region (DISOPRED)
*TTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTT*GSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS
Disordered Region (DISEMBL)
MTTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS
Disordered Region (DISPRO)
****TDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPD*****LSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
Q9FFU7	472	Putative F-box/LRR-repeat	yes	no	0.830	0.830	0.26	7e-21
Q9C7X8	479	Putative F-box/LRR-repeat	no	no	0.853	0.841	0.243	7e-18
Q9LJ48	463	Putative F-box protein At	no	no	0.718	0.732	0.253	7e-14
Q9M1Q1	461	F-box protein At3g62230 O	no	no	0.883	0.904	0.229	8e-13
Q9SZ44	453	F-box protein At4g27050 O	no	no	0.720	0.750	0.248	2e-09
Q9LXR6	457	Putative F-box protein At	no	no	0.834	0.862	0.221	3e-09
Q9LX47	504	Putative F-box/FBD/LRR-re	no	no	0.688	0.644	0.241	4e-08
Q9ZR09	498	Putative F-box/FBD/LRR-re	no	no	0.552	0.524	0.251	6e-08
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.843	0.900	0.207	9e-08
O64787	447	Putative FBD-associated F	no	no	0.641	0.677	0.234	1e-07

>sp|Q9FFU7|FBL90_ARATH Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana GN=At5g54820 PE=4 SV=1

 Score =  102 bits (254), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 192/450 (42%), Gaps = 58/450 (12%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D LS   D L+I+II+FLP  +  R  +  K+W  R L L   +    E+ ++ PD    
Sbjct: 7   DRLSSLPDILLIMIISFLPLKECVRTSVLSKRW--RYLCLETTNLSFKESDYVNPDI--- 61

Query: 66  WLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNI-YRQNIDKWI 124
                  T   Y + +    +F  VD+ V     + +   SF + +S  + +   ID  I
Sbjct: 62  -------TDAEYSRIVAYRSFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALI 112

Query: 125 EIVLEKSVQELSLDF------SDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG 178
           E  +   V+ L +D       S+GD      + R+  Y LP   Y     +  L I  C 
Sbjct: 113 EYAVSTRVKNLVVDLSNPSWRSNGD-----ISYRHFMYTLPKSVYSLTT-LESLKIYGCK 166

Query: 179 LGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGL 238
                FVN + L SL++  VRL    + ++    P L++LS+  C+    V+IT      
Sbjct: 167 FDPSKFVNPVLLRSLSIGWVRLE--NLHSLLSKSPSLQSLSIKNCW---GVDITSMAGQF 221

Query: 239 RKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVV----LD------YR 288
           R+L++ H     +     LPR+  F+Y+G++  F     D + V++    LD      Y 
Sbjct: 222 RELVIEHSDFSYMQCAFELPRIHSFKYSGELFEF---YFDVVNVIIPNVYLDFGEERVYD 278

Query: 289 LDTRYS-YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNT 347
           L ++ S  +G+ I  + N    A  L V    L++ P EC      L Q  +  HL L T
Sbjct: 279 LQSQSSRISGEVISRIINDLRAAETLTVCPYILQVIP-ECEK-PSDLLQPMETRHLVLRT 336

Query: 348 GLERFELAAIICLLISSPNITTLAIST------GAIMHTPDFRPNYFPLSRGEIWTTNGS 401
            +   E   II LL + PN+ TL           A        P  + + +     T  S
Sbjct: 337 KMHTKEFNGIILLLNNCPNLETLGFDILTPCPFSATSSDEGIDPKTYWMQK----RTCKS 392

Query: 402 ILDHLECVQFEGFTGKICEIDLVKFLLRNS 431
           +   L+ V    F G   E++++++L+R++
Sbjct: 393 LRKTLKVVVIRNFCGSSNELNVLRYLIRSA 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7X8|FBL33_ARATH Putative F-box/LRR-repeat protein At1g56400 OS=Arabidopsis thaliana GN=At1g56400 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 196/447 (43%), Gaps = 44/447 (9%)

Query: 2   TTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPD 61
           +   D LS+  D L+I+II+ L F +  R  +  K+W  R L    R+    E  ++   
Sbjct: 9   SIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRW--RYLCRETRNISFKETEYV--- 63

Query: 62  SRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYS-SNIYRQNI 120
                         +  KR  R+ +  ++ + V R    ++   +  +Y+S  + +   +
Sbjct: 64  -----------DHFVSDKRSKRVSFAAYMCQWVSRYHGRYIE--TLEIYFSIPSDFLAAV 110

Query: 121 DKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV---LPHFFYEQGMCIRVLNINSC 177
           +  IE  + + V+ L LDFSD   +      R   YV   LP   Y     +  L I SC
Sbjct: 111 ESLIEFAVSRQVKNLVLDFSDPSWISTSCASRY-DYVCVQLPVCVYSL-TTLESLKIYSC 168

Query: 178 GLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLG 237
           G     F N      L++  ++L+   +E++  N P L++LS+  C+ I   EI      
Sbjct: 169 GFDPSKFSNSRLPRKLSIGWIKLT--DVESLLLNSPTLKSLSINYCWGI---EIRNIAGD 223

Query: 238 LRKLIVRHCQSLSLGIELW-LPRLQYFEYAGKMVPFDMRGMD-DLEVVVLDYRLD----- 290
           +++ +   C   S  +  + LP ++ F+Y+G+++ FD++ M+  ++ V+LD+  +     
Sbjct: 224 MKEFVFESCDFSSFMVCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYED 283

Query: 291 --TRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG 348
              R    G  + +  N    AR L V    L+    EC      L +  + +HL L T 
Sbjct: 284 RNQRTKLEGSVLSAFLNNLRGARTLSVCPYLLQTI-QECED-PFDLLRPMETQHLVLRTR 341

Query: 349 LERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN---GSILDH 405
           L   E   I  LL + PN+ TL     +      +  +Y+ +     W  N    S+   
Sbjct: 342 LHVMEFKGIKLLLDNCPNLETLTFDIFS-RSLFSYNKSYYGVGPRSYWKKNLTYKSLPKT 400

Query: 406 LECVQFEGFTGKICEIDLVKFLLRNSR 432
           L+ V    FTG+  E++++KFL+++ R
Sbjct: 401 LKVVVVRNFTGRFGELNVLKFLIQSGR 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ48|FB191_ARATH Putative F-box protein At3g29830 OS=Arabidopsis thaliana GN=At3g29830 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 174/379 (45%), Gaps = 40/379 (10%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D +S   D ++++I++FL F D  +  +  K+W  R++    ++    E+ ++      Y
Sbjct: 8   DRISSLPDVVLVMILSFLSFKDNVKTSILSKRW--RNICYEAKNISFKESEYVDISVFDY 65

Query: 66  WLSIGRRTQVMYMKRIGRLKY-FHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWI 124
                        KR+  ++Y  ++V R   ++   F     F + +   I        I
Sbjct: 66  -----------VSKRVSFVRYMLNWVSRVPIKVIESFEICLGFPVGFEVEI-----KSLI 109

Query: 125 EIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV--LPHFFYEQGM-CIRVLNINSCGLGL 181
           E  + + V++L LDFS          LRN  +V  LP   Y  G+  +  L I +C    
Sbjct: 110 EFSISRQVKKLVLDFSSPFWDNTWDGLRNDDFVIELPALIY--GLQTLESLTIYACMFDP 167

Query: 182 CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241
             F N + L +L++   RL    +E++    P LE+LS++ CY + +V++    + +R+L
Sbjct: 168 SRFTN-VGLRTLSIGWFRLE--KIESLLSKFPLLESLSIISCY-LDEVKLA-GQIRVREL 222

Query: 242 IVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMR--GMDDLEVVVLDYRLDTR-----YS 294
           I+ +C   ++   L LP ++ F+Y+G ++ FD +   M  L+ V LD+ ++       YS
Sbjct: 223 IIDNCIIPTMYCLLNLPNIEIFKYSGNVIVFDFQKVNMILLKEVYLDFFIEHENDEPTYS 282

Query: 295 YN--GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERF 352
               GD +  L N    +R L V +  L++  +EC      + +  Q +HL L T +   
Sbjct: 283 PKEAGDILSHLLNDLRSSRTLTVCSYLLEVI-SEC-NDPVDMLRDVQAQHLVLETLMHPN 340

Query: 353 ELAAIICLLISSPNITTLA 371
           E   +  LL   PN+ TL 
Sbjct: 341 EFTGMRLLLDHCPNLETLT 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1Q1|FB215_ARATH F-box protein At3g62230 OS=Arabidopsis thaliana GN=At3g62230 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 178/449 (39%), Gaps = 32/449 (7%)

Query: 3   TNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDS 62
           +  D +S   D L+++II+ L F +A        +W  R +    R+    E   +    
Sbjct: 5   SAVDIISTLSDFLLVLIISNLSFKEALSTSRLSTRW--RHICRETRNISFREDEIVTFAD 62

Query: 63  RQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDK 122
                   R   V YM  +G +  F              +  F  RL  +S  + + +  
Sbjct: 63  DSVARYYQRAALVAYM--VGWVNNF----------TGGVVESFELRLS-NSYAFEEGVTT 109

Query: 123 WIEIVLEKSVQELSLDFSD------GDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINS 176
            IE  + K+V+ L LD S+       D    +P L      LP  FY+    +  L +  
Sbjct: 110 LIEFAVSKNVKHLFLDLSEPRWVTNNDAAQLEPGLIK----LPESFYKITSLV-TLKLFG 164

Query: 177 CGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTL 236
           C            + ++    +RL    +  +    P LE L++  C+ I    IT    
Sbjct: 165 CRFEPSRLAKPGMVKTMFFRWIRLE--MLSALIAKTPLLEILNIKNCWEIGLDAITGYND 222

Query: 237 GLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDL-EVVVLDYRLDTRYSY 295
            L KL+ ++C   +    L +P +Q F+Y GK+  F+    + L E   LDYR ++RY+ 
Sbjct: 223 RLMKLVFKYCSFSAQQTTLDVPNIQIFKYFGKVYRFEFASANKLMEEAYLDYREESRYNV 282

Query: 296 N-GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFEL 354
           + G  I         A+   +    L++   EC    R L    +   L L T  E  E 
Sbjct: 283 SAGAIISGFLYSMLSAKTFTICPYVLQLI-QECEDPVR-LKAPMETRQLVLKTNFEPNEF 340

Query: 355 AAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGF 414
             I  +L SSP + TL+          +  P   P +     T++  +   L+ V+   F
Sbjct: 341 VGIRFMLNSSPYLETLSFQMVGPRPIEEMVPQIDPEAYWGQNTSHECLKKTLKKVEVWSF 400

Query: 415 TGKICEIDLVKFLLRNSRSIKELNIKQLI 443
            G   E+ ++++L+R  R ++ +++ Q I
Sbjct: 401 YGGTHELRVLEYLIRYGRMLERVDLYQPI 429

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ44|FB309_ARATH F-box protein At4g27050 OS=Arabidopsis thaliana GN=At4g27050 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 158/383 (41%), Gaps = 43/383 (11%)

Query: 4   NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSR 63
           +TD +S+  DD++  I++ +P   A    +  K+W  R+L     S +  E     PD++
Sbjct: 2   DTDLISNLPDDVLGKILSLVPTKLAAATSVLSKRW--RNLLPLVDSLDFDETMLFYPDNK 59

Query: 64  QYWLSIGRRTQVMYMKRIGRLKYF-HFVDRAVCRLASEFLT-KFSFRLYYSSNIYRQNID 121
                 G      Y     R   F HFVD+ +  L++  LT KFS + Y+  +  R  I+
Sbjct: 60  D-----GEDEASSYESGQRRRHSFSHFVDKTLALLSNAPLTEKFSLKCYHEDDGAR--IN 112

Query: 122 KWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNP--QYVLPHFFYEQGMCIRVLNINSCGL 179
           +WI   LE+   EL+L+ ++  P+  Q    N   +  +   FY  G  +          
Sbjct: 113 RWIRTALERGCLELNLEAANYLPIDSQYFTSNTLVKLTISDGFYPGGHLLPF-------- 164

Query: 180 GLCNFVNFIQLTSLALTRVRLSWAAMEN-IAHNCPFLETLSLVECYRIFKVEITLRTLGL 238
                V F  L +L L  V  +   M N   H CP LE L L   +  +     ++ + +
Sbjct: 165 ---GGVFFPALKTLTLVSVCFTSVEMINFFIHGCPALEELFLC-VWMQYMSSPNVKRVTI 220

Query: 239 RKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGD 298
                   Q  S+ ++   P L Y +Y+  +       +D L    LD RL     Y+ D
Sbjct: 221 TSDFDDDIQRPSMVLK--TPSLVYLDYSSYVAGNYYVVLDSLVEARLDLRLYEPIIYDED 278

Query: 299 ---------DIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL 349
                    +I +L       +IL +S S+L++F   C      L     L +L++ +  
Sbjct: 279 GLWNAEVFGNITNLIEAIRTIKILHLSPSSLEVFYYCC-----DLPVLEDLVNLSIESDK 333

Query: 350 ERFELAAIICLLISSPNITTLAI 372
           E+     +  LL  SPN+ TL +
Sbjct: 334 EK-GWEVMPRLLNKSPNLQTLVV 355

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 180/442 (40%), Gaps = 48/442 (10%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D  S   D++I  I++ LP  +A    +  KKW  R L+    S + +++ F+ P     
Sbjct: 7   DLFSKLPDEVISHILSSLPTKEAASTSVLAKKW--RYLFAFVPSLDFNDSDFLHPQE--- 61

Query: 66  WLSIGRRTQVMYMKRIGRLKYF-HFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWI 124
               G+R      ++ G L+ F  FVDR +    +  + KFS  +   + +    +D+WI
Sbjct: 62  ----GKR------EKDGILRSFMDFVDRVLALQGASPIKKFSLNV--KTGVDPDRVDRWI 109

Query: 125 EIVLEKSVQELSL--DFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLC 182
             VL++ V  L+L  DF +             +Y LP+        + +       L L 
Sbjct: 110 CNVLQRGVSHLALFMDFEE-------------EYSLPYEISVSKTLVELKTGYGVDLYLW 156

Query: 183 NFVNFI-QLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241
           +   F+  L +L L  V       + +   CP LE L L+      +  + L +  L+ L
Sbjct: 157 DDDMFLPMLKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEWKDR-NVILSSSSLKNL 215

Query: 242 IVRHCQSLSLGIELWLPR---LQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDT-RYSYNG 297
            +         +    P    L Y++Y  +  P  +  + +L  V ++  L   R +   
Sbjct: 216 KITSEDGCLGTLSFDTPNLVFLDYYDYVAEDYP--IVNLKNLVEVGINLVLTADRINRAR 273

Query: 298 DDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAI 357
           D++ +L +   +A I  +S    ++    C      +  F  L  L + T +++    A+
Sbjct: 274 DNVWNLIHGIQNAEIFHISPVTFEVLSLSC----EAMPVFKNLTTLNIRTVMQQ-GWQAM 328

Query: 358 ICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGK 417
             LL + PN+ TL +  G ++HT   +                 +   +  +Q +GF G 
Sbjct: 329 PLLLKNCPNLETLYL--GGLLHTVTNKCGDVCDCIPRKKKGRSLMACPVNKIQIQGFRGT 386

Query: 418 ICEIDLVKFLLRNSRSIKELNI 439
           I E+ ++K  L    S+KE+ I
Sbjct: 387 IREVHMIKHFLDFCPSLKEMEI 408

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX47|FDL46_ARATH Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 165/385 (42%), Gaps = 60/385 (15%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D +SD  + LI  +++F+P  +A    +  +KW  R L+      +  ++ +M       
Sbjct: 8   DIISDLPEALICHLLSFVPTKEAALTSLLSEKW--RYLFAFAPILDFDDSVWM------- 58

Query: 66  WLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIE 125
                 ++ ++YM  + R K+  FVDR +    +  L +FS  L   + I R+ I +WI 
Sbjct: 59  ------QSPLVYMNEVHR-KFMDFVDRVLGLQGNSTLVRFS--LNCRNGIDRECIFRWIS 109

Query: 126 IVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFV 185
            V+E+ V +L L    G   V   ++  P  V    F  + +    +   +C +     V
Sbjct: 110 NVIERGVSDLDL----GGNFVSNRSM--PSSV----FVSKSLVKLRIRTENCTIIDLEDV 159

Query: 186 NFIQLTSLALTRV--RLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIV 243
              +L +L L+ +  R     +  +   C  LE L++ + +       ++ +  L++L V
Sbjct: 160 FLPKLKTLDLSSIWFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNRSMSSKTLKRLTV 219

Query: 244 RHCQSLSL---GIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTR-------- 292
            HC         I    P L YFEY      FD+   D  EVV  D  ++          
Sbjct: 220 -HCSDWDRSPGSISFDTPNLVYFEY------FDLVA-DKYEVVNFDSLVEASIGLRMRHH 271

Query: 293 ---YSYNGD---DIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLN 346
              ++  GD   +  +LF   S+ RILQ+ ++AL++       C   +  F +L HLT+ 
Sbjct: 272 QRAHASYGDLVVNATNLFMGISNVRILQLFSNALEVL----TFCCAPIPVFKKLIHLTVE 327

Query: 347 TGLERFELAAIICLLISSPNITTLA 371
           T  +     ++  LL + PN+ TL 
Sbjct: 328 TD-KDVGWESLPALLKNCPNLETLV 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZR09|FDL25_ARATH Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=4 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 134/326 (41%), Gaps = 65/326 (19%)

Query: 169 IRVLNINSCGLGL------CNFVNFIQLTSLALTRVRLSWAAMENIAHN--C-------- 212
           +R L + S  LG            F +LTSL+L+RV         I HN  C        
Sbjct: 151 LRALTLKSANLGFRLPPSSSARGGFQKLTSLSLSRV---------ILHNQPCLSDFFTDP 201

Query: 213 --PFLETLSLVECYRIFKVEITLRTL-------------------GLRKLIVRHC---QS 248
             P LE L+L  C+ + +++++ R L                    L+KL V  C    S
Sbjct: 202 SFPLLEKLTLECCFGLKELKVSCRLLQEFSLKNSLQLEGLEVSGNKLQKLKVESCFYSYS 261

Query: 249 LSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGD---DIESLFN 305
               +++  P L+ F +    V   +  +D L  V L       + ++ D    I+SLF 
Sbjct: 262 EKSFVKINTPNLKTFLWNSNAVTTSVHFLDKL--VCLRKAFVKVFWHHQDLNSQIQSLFT 319

Query: 306 PFS---DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLI 362
             S    +  LQ+   +++I  ++  L    L  F  +  L L T L R  +  + CL  
Sbjct: 320 LLSGLCHSYKLQLGNQSVEILSSKKGLLKNHLLPFHNMRFLELQTRLNRHNVQTLSCLFK 379

Query: 363 SSP--NITTLAISTGAIMHTPDFRPNYFPLSRGEI--WTTNG----SILDHLECVQFEGF 414
           S P  NI T+ I          +  + + +S  EI  W +      S L+HLE V+  GF
Sbjct: 380 SCPMLNILTVKIIDDQTSERRQWNKDLWDMSNSEIQYWESQAYELESFLNHLEFVEIHGF 439

Query: 415 TGKICEIDLVKFLLRNSRSIKELNIK 440
                E+ L  FLLR+ +++ ++ ++
Sbjct: 440 VECENEMSLAIFLLRHGKALIKMTLR 465

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 100/483 (20%), Positives = 188/483 (38%), Gaps = 85/483 (17%)

Query: 4   NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSR 63
           N D + +  D L+  ++++LP ID+ +  +  K+W    LWL     +L  + F  PD  
Sbjct: 2   NCDRICELPDSLLTQVLSYLPTIDSVKTSVLSKRW--EFLWLRVPVLDLKVSDF--PDE- 56

Query: 64  QYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKF---SFRLYYSSNIYRQN- 119
                                 Y  F+D  +     EF  K     F+L Y    Y  + 
Sbjct: 57  ---------------------NYASFIDNFL-----EFNRKSRMRKFKLKYDEYTYDDDR 90

Query: 120 IDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGL 179
           +  W+   +++ +Q L     + +  V +         +P   Y+   C  ++++    +
Sbjct: 91  LAGWVVTTVDRGIQHLDAKGFETNMCVRE--------FMPQNIYK---CNTLVSLMLVTV 139

Query: 180 GLCNFVNFIQLTSLALTRVRLSW-----AAMENIAHNCPFLETLSLVECYRIFKVEI--- 231
           G+ N    + L SL +  +   W       ME I   CP LE   L+       +++   
Sbjct: 140 GIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQF 199

Query: 232 -TLRTLGLRKLIVRHCQSLS---LGIELWLPRLQYFEYAGKMV-PFDMRGMDDLEVVVLD 286
             +R+L LR   +    S+S     +E+  PRL+Y  +         ++ M  L ++ +D
Sbjct: 200 LRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSLSMIDID 259

Query: 287 YRLDTRYS---------YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQF 337
              + ++             D I       S  R + +S   L++          +L   
Sbjct: 260 SEFNVKFGGSRLEPGDLRKRDIIRDFLTAISCVRHMIISRRTLEVLDR-----YSKLVPI 314

Query: 338 WQLEHL-TLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIW 396
            + ++L  L   + R  L  ++  L S PN+  L +         DF  +  P   G  +
Sbjct: 315 PKFDNLYRLQAAVSRSMLQLLLVFLESCPNLENLIL---------DFTVSTEPEQDGLTY 365

Query: 397 TTNGSILDHLECVQF-EGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFK 455
                +L  LECV+  E   G+     LV++ L+NS  +K+L ++    + ++  S+ FK
Sbjct: 366 VPQ-CLLSSLECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSDIFK 424

Query: 456 EIN 458
           E++
Sbjct: 425 ELS 427

Arabidopsis thaliana (taxid: 3702)

>sp|O64787|FBD4_ARATH Putative FBD-associated F-box protein At1g61330 OS=Arabidopsis thaliana GN=At1g61330 PE=4 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 133/329 (40%), Gaps = 26/329 (7%)

Query: 123 WIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLC 182
           W++  L K+++EL LDFS    V+  P             +     + VL +  C   + 
Sbjct: 102 WVDTCLRKNIKELVLDFSSSKKVMEIP-----------LNFSSSETLTVLKLQWCRFEIP 150

Query: 183 NFV--NFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRK 240
           N +      L +L+L R  ++   +++I +NC  LE+L LV+C       +T+     +K
Sbjct: 151 NNLPKGLRLLKTLSLMRTEVTNEMIDSIFNNCIHLESLELVKCQMSGNGILTIYAHDHKK 210

Query: 241 L--IVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGD 298
              +V  C    L I L  P L+ ++Y G     ++  ++ LE     Y    R   +  
Sbjct: 211 FKSLVVSCMPNLLSIFLDAPTLECYKYDGYAKTINVLKVNALEEAEFHYSRSKRRHSSDT 270

Query: 299 DIESLFNPFSDARILQVSTSALKIFPTECLLCG--RQLFQFWQLEHLTLNTGLERF-ELA 355
            ++S+    S    L  +   L+      L     + LF+F  L    +      F  L 
Sbjct: 271 VVDSML-ACSAVHALTTTNILLEAITYRYLKGKLEKPLFKFENLREFKIFFKAPTFCTLF 329

Query: 356 AIICLLISSPNITTLAISTGAIMHTPDFRPNYF--PLSRGEIWTT--NGSILDHLECVQF 411
            I   L   P +    I        P     YF     + +I  T  N  +L  L  V+ 
Sbjct: 330 DIAEFLKECPKLEQFIIDIQNFTFEPQM---YFWEIHHKAQIQNTSNNNYLLKCLTDVKI 386

Query: 412 EGFTGKICEIDLVKFLLRNSRSIKELNIK 440
            G+ G   E+D+V+F ++N+ S+K L ++
Sbjct: 387 IGYKGHWHELDIVEFFVKNAPSLKRLELQ 415

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
224124282	463	predicted protein [Populus trichocarpa]	0.883	0.900	0.275	7e-38
224115268	463	predicted protein [Populus trichocarpa]	0.885	0.902	0.258	6e-32
359494023	730	PREDICTED: F-box protein At3g62230-like	0.853	0.552	0.271	2e-29
357450393	456	hypothetical protein MTR_2g048140 [Medic	0.877	0.907	0.224	2e-21
255564005	414	conserved hypothetical protein [Ricinus	0.639	0.729	0.245	2e-21
15239757	472	putative F-box/LRR-repeat protein [Arabi	0.830	0.830	0.26	4e-19
357492277	391	F-box protein [Medicago truncatula] gi|3	0.758	0.915	0.230	6e-18
15223532	479	F-box protein [Arabidopsis thaliana] gi|	0.853	0.841	0.243	4e-16
255586156	539	conserved hypothetical protein [Ricinus	0.881	0.771	0.236	8e-16
297853526	479	F-box family protein [Arabidopsis lyrata	0.847	0.835	0.240	2e-15

>gi|224124282|ref|XP_002319292.1| predicted protein [Populus trichocarpa] gi|222857668|gb|EEE95215.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 205/447 (45%), Gaps = 30/447 (6%)

Query: 1   MTTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMP 60
           M  NTD  S+    L+I+I +FL F +A R C+  K+W +  +W    + +  E +F+  
Sbjct: 1   MDRNTDMFSNLPSSLLIIIASFLSFKEAARTCILSKQWLN--IWREVENVDFDENNFVKL 58

Query: 61  DSRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSN--IYRQ 118
           D  +              +++ R  + +F  + +   + + +    FR     N  +  Q
Sbjct: 59  DESEE------------NQKVQREVFINFARQFIANHSQQVIKTLGFRCSKPGNFLVDMQ 106

Query: 119 NIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV--LPHFFYEQGMCIRVLNINS 176
           NI   +      +   L LDFSD  P   +  + N + V  LP   YE G  +  L + S
Sbjct: 107 NI---VMFATSHNATGLRLDFSD--PTWREDAIMNHEAVSELPSHVYEHGQALESLKLFS 161

Query: 177 CGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTL 236
           C      F NF  + SL+L  + ++  ++  I  +CP LETL L +C+ +   E++   L
Sbjct: 162 CRFDASKFTNFSAIKSLSLGWININIGSILVILESCPLLETLHLKKCWNLEYFEVSKPGL 221

Query: 237 GLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYN 296
            L+ L++  C      + +  PR Q+F+Y+GK+  F +    D+    LD+ + T +   
Sbjct: 222 RLQNLVLDKCDIRHEWLAIEGPRFQFFKYSGKVGQFLLENQRDMVEAELDFGMQTEFEEV 281

Query: 297 GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAA 356
           G  +  L      ARIL V +  L+I P+     G Q      +  L L T L   E   
Sbjct: 282 GAFLYDLLQELFAARILTVCSVFLQIIPSGDEPLGLQ--APLDVRKLILKTALHSNEYCG 339

Query: 357 IICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGS----ILDHLECVQFE 412
           I  +L SSP + TL I  G     PD+ P Y P    E+W+ N      +++ L  V  +
Sbjct: 340 IKFMLRSSPRLETLTIDIGPARIFPDYEPPY-PFDPEELWSRNFQVEFCVIETLRVVNVK 398

Query: 413 GFTGKICEIDLVKFLLRNSRSIKELNI 439
           GF G   E+ ++++LL   R+++ELN+
Sbjct: 399 GFKGTRNELYVLRYLLHFGRAMEELNL 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115268|ref|XP_002316987.1| predicted protein [Populus trichocarpa] gi|222860052|gb|EEE97599.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 216/476 (45%), Gaps = 58/476 (12%)

Query: 1   MTTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMP 60
           M  N D +S+    L+I+I  FL F +A R  +  K+W +  +W      + +E  F+  
Sbjct: 1   MDRNIDMISNLPSSLLIIIAGFLSFKEAARTSVLSKQWLN--IWRDAMHIQFNENFFVKS 58

Query: 61  DS--------RQYWLSIGRRTQVMY----MKRIGRLKYFHFVDRAVCRLASEFLTKFSFR 108
           D         R+ +++  R+    Y    +K +G            C    +FL      
Sbjct: 59  DEPEENQKVQREVFINFARQFIANYPPQDIKTLG----------LTCSKPGDFLADMQNI 108

Query: 109 LYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQ--YVLPHFFYEQG 166
           + ++S+               ++V+EL LDFSD  P   +  L N Q  + LP   YE G
Sbjct: 109 VMFASS---------------RNVRELGLDFSD--PTWREHALENHQAAFELPLLVYEHG 151

Query: 167 MCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRI 226
             ++ + + SC   + NF NF  L +L+L  ++++  ++  I  +CP LE+LSL +C+ I
Sbjct: 152 QALKSMKLFSCSFDVSNFSNFCALKTLSLGWIKINMGSILAILESCPLLESLSLKKCWDI 211

Query: 227 FKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLD 286
              EI+     L+ L++  C      + +  P+LQ+F+++G +  F +    DL    LD
Sbjct: 212 VSFEISKPGSRLKSLVIEECDIADDFVLIEGPKLQFFKFSGNVGEFLLDDQSDLVKAELD 271

Query: 287 YRLDTRYSYNG----DDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEH 342
           +  +T +   G    D +E LF     A++L V +  L+I P+     G Q      + +
Sbjct: 272 FETETAFDEIGLFLCDLLEDLFA----AQVLTVCSVFLQIVPSGNEPLGLQ--AQIDVRY 325

Query: 343 LTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN--- 399
           L L T L   E   I  +L S P++  L I  G     P++   Y P +  E W+ +   
Sbjct: 326 LILKTALHINEFCGIRFMLRSCPHLEILTIDIGPANIFPEYGAPY-PFNPQEFWSEDLLV 384

Query: 400 -GSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAF 454
              +   L+ V  +GF G + E++++K+LL    +++EL +     A S+  +  F
Sbjct: 385 EECVTTTLKAVNVKGFKGMMNELNVLKYLLLFGHAMEELTLYVSNEAGSNGETREF 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494023|ref|XP_002281469.2| PREDICTED: F-box protein At3g62230-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 206/446 (46%), Gaps = 43/446 (9%)

Query: 3   TNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDS 62
           TN D  S   D +I +I++FLPFIDA R  +  K+W  R +W      E  E+ F+    
Sbjct: 8   TNADMFSFLPDHVISLILSFLPFIDAARTSVLSKRW--RHIWHATVRIEFDESFFV---- 61

Query: 63  RQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDK 122
                   +R +    + + R  +  F+ + +       +  FS   + +   YR +++ 
Sbjct: 62  --------KREESTEKRELARCGFIDFMRQWMLNYKEPVVETFSLS-FTNPGEYRLDMEN 112

Query: 123 WIEIVLEKSVQELSLDFSD---GDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGL 179
            +   + +  + L LDF+D   G+     P LR   + LP F Y+  + +  L + SC  
Sbjct: 113 CLRFAILRGTRGLYLDFADPSWGEDEF-DPHLR--LFQLPTFVYKHKV-LESLKLFSCRF 168

Query: 180 GLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR 239
            +  F  F  L  L+L  V +  ++++ +  NCP LE L L  C+ +   +I+   L LR
Sbjct: 169 DVSEFSAFSVLKDLSLGWVEVRSSSLKALLMNCPLLEGLCLKNCWNLGDPDISGPNLRLR 228

Query: 240 KLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRY---SYN 296
           +LI+  C S+   I L   +LQYF+Y+G +  F +    D+E   LD+ L++ +    Y 
Sbjct: 229 RLIIDKC-SIDNHIILMAQKLQYFKYSGLVKSFLLEDQPDVEEAELDFGLESEFDNSGYC 287

Query: 297 GDDIESLF-NPFSDARILQVSTSALKIFPTECLLCGRQLFQFW----QLEHLTLNTGLER 351
           GD ++ +  N +S+   L V +  L+  P+     G +  + +     + HL L T +  
Sbjct: 288 GDTLQDILRNIYSNT--LTVCSYMLQELPS-----GEEPLRLYPYLDDMRHLILKTSMHS 340

Query: 352 FELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILD----HLE 407
           +EL  I  LL S P +  L I  G      D+ P  F +     W  +   +D     L+
Sbjct: 341 YELYGISFLLKSCPGLDMLTIDLGPARIFADYEPP-FQIQSHVFWAQHIPFIDCVRETLK 399

Query: 408 CVQFEGFTGKICEIDLVKFLLRNSRS 433
            V+  GF G+  EI+L++ +LR   S
Sbjct: 400 VVEVNGFKGEPNEIELLQNVLRGMPS 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450393|ref|XP_003595473.1| hypothetical protein MTR_2g048140 [Medicago truncatula] gi|355484521|gb|AES65724.1| hypothetical protein MTR_2g048140 [Medicago truncatula]

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 200/441 (45%), Gaps = 27/441 (6%)

Query: 4   NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSR 63
           N +  S     L++ I++FLP  +A R  +  +KW    +W    + + +E  F+   S 
Sbjct: 5   NMELFSSILKPLLLAIVSFLPSQEATRTPILLQKW--SKIWQSEENIDFNENFFVDSTSD 62

Query: 64  QYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKW 123
           +              K+  R  + +F+   +    S  + +FS  +  +     + I++ 
Sbjct: 63  EN-------------KQEQRKVFINFITSWIAHFPSRAINRFSLTVS-NPQTCGETIERC 108

Query: 124 IEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCN 183
           +   +++ V+EL LDF D          ++  + LP   Y+ G+ +  L + SCG    +
Sbjct: 109 VAFTIQRGVKELILDFPDPKWEDNDFDGKHALFQLPTHVYQLGLSLESLKLYSCGFDAQD 168

Query: 184 FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIV 243
           F+NF  L  L+L  + +    ++ +   C  +E+L+L +C+ +   ++    LGL +L+V
Sbjct: 169 FLNFGALKDLSLGWIEVKIKTLKKLLSICRTIESLNLKKCWNLANFDLGDEPLGLTRLVV 228

Query: 244 RHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESL 303
             C S         P L+YF+Y+G +   D+  +  +E V +D+  ++ ++  G+++  +
Sbjct: 229 NKCDSEYFIFN--APNLKYFKYSGVVFTSDI-NVRAIEEVDIDFSQESEFNERGNELCQI 285

Query: 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLIS 363
            + FS A IL V +  L++ P+       Q      ++HLTL T +  +EL     +L S
Sbjct: 286 LHDFSAANILTVCSYLLQVVPSGDEPVKMQ--SALNVKHLTLKTKMHSYELCGFEFMLNS 343

Query: 364 SPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN----GSILDHLECVQFEGFTGKIC 419
            P +  L +     +   D+   Y  +   + W T       + + L+ V+  G      
Sbjct: 344 CPLLEKLILDISPQLIFEDYTLPY-QVDLKKFWQTRRVFPECLKNSLKVVEVIGLRATNE 402

Query: 420 EIDLVKFLLRNSRSIKELNIK 440
           E+    FL++  + ++++NIK
Sbjct: 403 ELMTCCFLMQ-GKVLEQINIK 422

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564005|ref|XP_002523002.1| conserved hypothetical protein [Ricinus communis] gi|223537814|gb|EEF39432.1| conserved hypothetical protein [Ricinus communis]

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 155/322 (48%), Gaps = 20/322 (6%)

Query: 2   TTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPD 61
           + N D  +     L+++I+++LPF +A R C+  K+W D  +W    + E +E  F+ P+
Sbjct: 11  SNNVDVFNRLTSSLLVLIVSYLPFREAARTCILSKQWVD--VWRETTNLEFNENFFVKPE 68

Query: 62  SRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNID 121
                    +  Q+     I R  +  FV + V +   + + +F+         +  +I 
Sbjct: 69  E-------TKENQM-----ILRNSFIDFVRQFVAQYPQKGIQRFALACS-DPQAFLSDIR 115

Query: 122 KWIEIVLEKSVQELSLDFSDGDPVVPQPTL--RNPQYVLPHFFYEQGMCIRVLNINSCGL 179
            ++   + ++V+EL LDFSD  P   + +L    P + LP   Y+    + +L + SC  
Sbjct: 116 NFVVFAISRNVRELELDFSD--PTWREDSLDSHQPAFELPLQIYQHKRLV-LLKLFSCRF 172

Query: 180 GLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR 239
               F NF  L S++L    +S  +++ +  NCP +E+LSL +C+ +   EI+L  L L+
Sbjct: 173 DASRFTNFSTLKSVSLGWTGISVVSIKALLVNCPLIESLSLKKCWDLEHFEISLPNLRLK 232

Query: 240 KLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDD 299
            L++ +C  +     +  P+L++ +Y+G++  F M    ++    LD+ ++  +   G  
Sbjct: 233 NLVLDNCNFIQDWFCIEGPKLEFLKYSGRIGHFHMSNQRNMVEADLDFGMELEFDDVGSL 292

Query: 300 IESLFNPFSDARILQVSTSALK 321
           +      F   +IL V +  L+
Sbjct: 293 LYDFLQEFYAVQILTVCSVLLQ 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239757|ref|NP_200293.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75262400|sp|Q9FFU7.1|FBL90_ARATH RecName: Full=Putative F-box/LRR-repeat protein At5g54820 gi|9758262|dbj|BAB08761.1| unnamed protein product [Arabidopsis thaliana] gi|332009161|gb|AED96544.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 192/450 (42%), Gaps = 58/450 (12%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D LS   D L+I+II+FLP  +  R  +  K+W  R L L   +    E+ ++ PD    
Sbjct: 7   DRLSSLPDILLIMIISFLPLKECVRTSVLSKRW--RYLCLETTNLSFKESDYVNPDI--- 61

Query: 66  WLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNI-YRQNIDKWI 124
                  T   Y + +    +F  VD+ V     + +   SF + +S  + +   ID  I
Sbjct: 62  -------TDAEYSRIVAYRSFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALI 112

Query: 125 EIVLEKSVQELSLDF------SDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG 178
           E  +   V+ L +D       S+GD      + R+  Y LP   Y     +  L I  C 
Sbjct: 113 EYAVSTRVKNLVVDLSNPSWRSNGD-----ISYRHFMYTLPKSVYSLTT-LESLKIYGCK 166

Query: 179 LGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGL 238
                FVN + L SL++  VRL    + ++    P L++LS+  C+    V+IT      
Sbjct: 167 FDPSKFVNPVLLRSLSIGWVRLE--NLHSLLSKSPSLQSLSIKNCW---GVDITSMAGQF 221

Query: 239 RKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVV----LD------YR 288
           R+L++ H     +     LPR+  F+Y+G++  F     D + V++    LD      Y 
Sbjct: 222 RELVIEHSDFSYMQCAFELPRIHSFKYSGELFEF---YFDVVNVIIPNVYLDFGEERVYD 278

Query: 289 LDTRYS-YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNT 347
           L ++ S  +G+ I  + N    A  L V    L++ P EC      L Q  +  HL L T
Sbjct: 279 LQSQSSRISGEVISRIINDLRAAETLTVCPYILQVIP-ECEK-PSDLLQPMETRHLVLRT 336

Query: 348 GLERFELAAIICLLISSPNITTLAIST------GAIMHTPDFRPNYFPLSRGEIWTTNGS 401
            +   E   II LL + PN+ TL           A        P  + + +     T  S
Sbjct: 337 KMHTKEFNGIILLLNNCPNLETLGFDILTPCPFSATSSDEGIDPKTYWMQK----RTCKS 392

Query: 402 ILDHLECVQFEGFTGKICEIDLVKFLLRNS 431
           +   L+ V    F G   E++++++L+R++
Sbjct: 393 LRKTLKVVVIRNFCGSSNELNVLRYLIRSA 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492277|ref|XP_003616427.1| F-box protein [Medicago truncatula] gi|355517762|gb|AES99385.1| F-box protein [Medicago truncatula]

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 175/421 (41%), Gaps = 63/421 (14%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D  S  HD L+ +I++ LPF DA +     K W   ++    R+ E +E  F+  D    
Sbjct: 5   DRFSLLHDSLLSIIVSSLPFKDAVKTSTLSKDW--ENVCKLTRNIEFNELFFIKFDQPH- 61

Query: 66  WLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIE 125
                   ++++ +R+    +  F+ + +       + KFS  +  + N++ ++ID+ I 
Sbjct: 62  --------EIVHSQRMA---FLDFMKKGIENHGENAIDKFSLTMS-AHNVFSEDIDRCIR 109

Query: 126 IVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV----LPHFFYEQGMCIRVLNINSCGLGL 181
             +   V++L LDF+   P   +       +V    L  + YE    ++ L + SC    
Sbjct: 110 FAIRNEVKDLELDFTS--PTWNKDEFYYNNFVASVDLSSYVYEYS-GLQSLKLYSCDFSA 166

Query: 182 CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241
              VNF  L  ++L  +R+S  A+E +  NC  LE+L+  +C+ + +  +    LGL+KL
Sbjct: 167 SEMVNFHSLKEISLGFMRVSICAIEALLTNCEMLESLNFYKCWSLDEFILKGEYLGLKKL 226

Query: 242 IVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGD-DI 300
           ++  C   S    +  P L+ F+Y G +   D++    L+ V LD+ L+     +G   +
Sbjct: 227 VINRCHFKSSTFRINAPNLKVFDYHGSLFDIDIQS-PALDEVNLDFPLELGCQSHGSYYL 285

Query: 301 ESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICL 360
             L       R++ V +                   +W               L  I  +
Sbjct: 286 HKLLKDLPSPRVMTVCS-------------------YW---------------LQGITFM 311

Query: 361 LISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN----GSILDHLECVQFEGFTG 416
           L S PN+  L I      +   F P  FP+   + W         +  HL+ V+ +GF  
Sbjct: 312 LNSCPNLEHLTIEIVEKRYMNFFEP-VFPIIPEKYWIDTIEAYKCVKSHLKKVEIKGFKV 370

Query: 417 K 417
           K
Sbjct: 371 K 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223532|ref|NP_176035.1| F-box protein [Arabidopsis thaliana] gi|75268371|sp|Q9C7X8.1|FBL33_ARATH RecName: Full=Putative F-box/LRR-repeat protein At1g56400 gi|12323022|gb|AAG51499.1|AC058785_2 hypothetical protein [Arabidopsis thaliana] gi|332195266|gb|AEE33387.1| F-box protein [Arabidopsis thaliana]

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 196/447 (43%), Gaps = 44/447 (9%)

Query: 2   TTNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPD 61
           +   D LS+  D L+I+II+ L F +  R  +  K+W  R L    R+    E  ++   
Sbjct: 9   SIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRW--RYLCRETRNISFKETEYV--- 63

Query: 62  SRQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYS-SNIYRQNI 120
                         +  KR  R+ +  ++ + V R    ++   +  +Y+S  + +   +
Sbjct: 64  -----------DHFVSDKRSKRVSFAAYMCQWVSRYHGRYIE--TLEIYFSIPSDFLAAV 110

Query: 121 DKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV---LPHFFYEQGMCIRVLNINSC 177
           +  IE  + + V+ L LDFSD   +      R   YV   LP   Y     +  L I SC
Sbjct: 111 ESLIEFAVSRQVKNLVLDFSDPSWISTSCASRY-DYVCVQLPVCVYSL-TTLESLKIYSC 168

Query: 178 GLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLG 237
           G     F N      L++  ++L+   +E++  N P L++LS+  C+ I   EI      
Sbjct: 169 GFDPSKFSNSRLPRKLSIGWIKLT--DVESLLLNSPTLKSLSINYCWGI---EIRNIAGD 223

Query: 238 LRKLIVRHCQSLSLGIELW-LPRLQYFEYAGKMVPFDMRGMD-DLEVVVLDYRLD----- 290
           +++ +   C   S  +  + LP ++ F+Y+G+++ FD++ M+  ++ V+LD+  +     
Sbjct: 224 MKEFVFESCDFSSFMVCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYED 283

Query: 291 --TRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG 348
              R    G  + +  N    AR L V    L+    EC      L +  + +HL L T 
Sbjct: 284 RNQRTKLEGSVLSAFLNNLRGARTLSVCPYLLQTI-QECED-PFDLLRPMETQHLVLRTR 341

Query: 349 LERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN---GSILDH 405
           L   E   I  LL + PN+ TL     +      +  +Y+ +     W  N    S+   
Sbjct: 342 LHVMEFKGIKLLLDNCPNLETLTFDIFS-RSLFSYNKSYYGVGPRSYWKKNLTYKSLPKT 400

Query: 406 LECVQFEGFTGKICEIDLVKFLLRNSR 432
           L+ V    FTG+  E++++KFL+++ R
Sbjct: 401 LKVVVVRNFTGRFGELNVLKFLIQSGR 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586156|ref|XP_002533738.1| conserved hypothetical protein [Ricinus communis] gi|223526344|gb|EEF28641.1| conserved hypothetical protein [Ricinus communis]

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 205/469 (43%), Gaps = 53/469 (11%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D +S+  + LI+ I++FLP      + +  ++W  + LW       L+E   +    ++ 
Sbjct: 33  DYISNLLEVLILHILSFLPLKQWIVVSLLSRQW--KYLWTKISILNLNEIEIISNIMKKD 90

Query: 66  WL-----SIGRRTQVMYMKR-IGRLKYFHFVDRAVCRLASEFL--TKFSFRLYYSSNIYR 117
                   I    + ++  R   R K+  FVDR +   +   +   + SF LY   + Y 
Sbjct: 91  IFCPLCGDIPSSYRCLHHSRYAARSKFVEFVDRMLLLHSGSVIDTMRLSF-LYDFHDGYN 149

Query: 118 QNIDKWIEIVLEKSVQELSLDFSDGDPVV----PQPTLRNPQYVLPHFFYEQGMCIRVLN 173
           Q ID W+   L  +V+EL L+FSD +          T+R+P    P+         ++L 
Sbjct: 150 QRIDTWVRYALASNVKELELNFSDAEHFQFFDQKGLTVRHPDPPRPYELPCGSFAPKILK 209

Query: 174 INSCGLGLCNF--VNFIQLTSLA---LTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK 228
             S  L  CNF   NF  L+SL    L ++++   ++E IA  CP LE + L  C     
Sbjct: 210 --SFILTFCNFRTSNFNVLSSLQKLHLKQLKVLDGSIEEIASKCPVLEDIILEYCLIPDG 267

Query: 229 VEITLRTLGLRKLIVRHCQSLS-LGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDY 287
             ++   + +++L V HC S   L + +  P L      G+        ++   +    +
Sbjct: 268 FFVSKEDIKIKRLSVVHCASNERLRMSISTPNLVMLRIIGEC-------LNSASIQKATH 320

Query: 288 RLDTR------YSYN--GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQ 339
            +D +      Y+ N  GD + +L       + L VST ++++ P E  L  +      +
Sbjct: 321 LIDAQIGICVIYTNNADGDALNTLLRGLRHCQSLTVSTWSIQVLPIESTLQQQLPIPLRK 380

Query: 340 LEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP-DFRPNYFPLSRGE---- 394
           ++HL L   + + ELA + CLL S  N+  L     A++  P D      P S  +    
Sbjct: 381 VKHLKLIAAISKKELARLSCLLRSCSNLEILT----AVLSGPLDLLGFELPNSATDDIFE 436

Query: 395 --IWTTNG----SILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKEL 437
              W +       + + L+ +   G  G+I E++++ F+L+N+ +++++
Sbjct: 437 QTFWESQTLPFPCLRNSLKQLTVTGLMGRINEVEMIMFILKNAVALEKV 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853526|ref|XP_002894644.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297340486|gb|EFH70903.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 186/444 (41%), Gaps = 44/444 (9%)

Query: 6   DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
           D LS+  D ++I II++L F +  R  +  K+W  R L    R+    E+ ++       
Sbjct: 13  DGLSNLPDVILITIISYLSFKECLRTSVLAKRW--RYLCRETRNIAFKESEYV------- 63

Query: 66  WLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIE 125
                     +  K   R+ + H++ + + R    ++          S  +   I   IE
Sbjct: 64  -------DHSVSDKISKRISFVHYMRQWISRYHGRYIETLEINFSIPSG-FVAEIQSLIE 115

Query: 126 IVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV--LPHFFYEQGMCIRVLNINSCGLGLCN 183
             + + V+ L LDF D   +      R    V  LP   Y     +  L I SCG     
Sbjct: 116 FAVSRQVKNLVLDFKDPSWISTSWASRYDHVVVQLPVCVYSL-TTLESLKIYSCGFDPSK 174

Query: 184 FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIV 243
           F N      L++  ++L    ++++  N P L++LSL  C+    VEI      +++ + 
Sbjct: 175 FSNSRLPRKLSIGWIKL--PEVDSLLSNSPTLKSLSLDYCW---GVEIKNIAGDMKEFVF 229

Query: 244 RHCQSLS-LGIELWLPRLQYFEYAGKMVPFDMRGMD-DLEVVVLDY-------RLDTRYS 294
             C   S +     LP ++ F+Y+G+++ FD++ M+  ++ V LD+       + + R  
Sbjct: 230 DRCDFSSFMACSFDLPNVEIFKYSGQILSFDVKRMNMSIKDVYLDFTAEGEYDKRNQRTK 289

Query: 295 YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFEL 354
             G  + +  N    AR L V    L+    EC      L +  + +HL L T L   E 
Sbjct: 290 LEGSVLSAFLNNLRGARTLSVCPYLLQTI-QEC-EDPLDLLRPMETQHLVLRTRLHVTEF 347

Query: 355 AAIICLLISSPNITTLAISTGAIMHTPDFRPN--YFPLSRGEIWTTN---GSILDHLECV 409
             I  LL + PN+  L   T  I +   F  N  Y+ +     W  N    S+   L+ V
Sbjct: 348 KGIRLLLDNCPNLEML---TFDIFNRSIFSYNKSYYGVGPRSYWKKNLTYKSLPKTLKVV 404

Query: 410 QFEGFTGKICEIDLVKFLLRNSRS 433
               F G+  E++++KFL+++ R 
Sbjct: 405 VVRNFRGRFGELNVLKFLIQSGRG 428

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
TAIR|locus:2010708	479	AT1G56400 "AT1G56400" [Arabido	0.845	0.832	0.255	3.2e-20
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.739	0.739	0.256	4.2e-15
TAIR|locus:2098088	461	DAF1 "AT3G62230" [Arabidopsis	0.881	0.902	0.243	1.1e-14
TAIR|locus:2081242	504	AT3G59240 "AT3G59240" [Arabido	0.775	0.726	0.240	1.7e-10
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.697	0.721	0.221	2.3e-10
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.658	0.680	0.212	4.1e-10
TAIR|locus:2116362	453	AT4G27050 "AT4G27050" [Arabido	0.718	0.748	0.252	1.9e-09
TAIR|locus:2197674	447	AT1G61330 "AT1G61330" [Arabido	0.641	0.677	0.237	2.4e-08
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.709	0.720	0.223	2.6e-08
TAIR|locus:2166295	449	AT5G62970 "AT5G62970" [Arabido	0.510	0.536	0.247	4.9e-08

TAIR|locus:2010708 AT1G56400 "AT1G56400" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 113/443 (25%), Positives = 199/443 (44%)

Query:     6 DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQY 65
             D LS+  D L+I+II+ L F +  R  +  K+W  R L   CR  E    SF   +   +
Sbjct:    13 DRLSNLPDVLLIMIISCLSFKECIRTSVLAKRW--RYL---CR--ETRNISFKETEYVDH 65

Query:    66 WLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYS-SNIYRQNIDKWI 124
             ++S          KR  R+ +  ++ + V R    ++   +  +Y+S  + +   ++  I
Sbjct:    66 FVSD---------KRSKRVSFAAYMCQWVSRYHGRYIE--TLEIYFSIPSDFLAAVESLI 114

Query:   125 EIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYV---LPHFFYEQGMCIRVLNINSCGLGL 181
             E  + + V+ L LDFSD   +      R   YV   LP   Y     +  L I SCG   
Sbjct:   115 EFAVSRQVKNLVLDFSDPSWISTSCASRY-DYVCVQLPVCVYSL-TTLESLKIYSCGFDP 172

Query:   182 CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241
               F N      L++  ++L+   +E++  N P L++LS+  C+ I   EI      +++ 
Sbjct:   173 SKFSNSRLPRKLSIGWIKLT--DVESLLLNSPTLKSLSINYCWGI---EIRNIAGDMKEF 227

Query:   242 IVRHCQSLSLGIELW-LPRLQYFEYAGKMVPFDMRGMD-DLEVVVLDYRLDTRYS----- 294
             +   C   S  +  + LP ++ F+Y+G+++ FD++ M+  ++ V+LD+  +  Y      
Sbjct:   228 VFESCDFSSFMVCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQR 287

Query:   295 --YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERF 352
                 G  + +  N    AR L V    L+    EC      L +  + +HL L T L   
Sbjct:   288 TKLEGSVLSAFLNNLRGARTLSVCPYLLQTIQ-ECE-DPFDLLRPMETQHLVLRTRLHVM 345

Query:   353 ELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN---GSILDHLECV 409
             E   I  LL + PN+ TL     +      +  +Y+ +     W  N    S+   L+ V
Sbjct:   346 EFKGIKLLLDNCPNLETLTFDIFS-RSLFSYNKSYYGVGPRSYWKKNLTYKSLPKTLKVV 404

Query:   410 QFEGFTGKICEIDLVKFLLRNSR 432
                 FTG+  E++++KFL+++ R
Sbjct:   405 VVRNFTGRFGELNVLKFLIQSGR 427

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 95/371 (25%), Positives = 158/371 (42%)

Query:    73 TQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNI-YRQNIDKWIEIVLEKS 131
             T   Y + +    +F  VD+ V     + +   SF + +S  + +   ID  IE  +   
Sbjct:    62 TDAEYSRIVAYRSFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALIEYAVSTR 119

Query:   132 VQELSLDFSDGD-PVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQL 190
             V+ L +D S+         + R+  Y LP   Y     +  L I  C      FVN + L
Sbjct:   120 VKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSL-TTLESLKIYGCKFDPSKFVNPVLL 178

Query:   191 TSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLS 250
              SL++  VRL    + ++    P L++LS+  C+    V+IT      R+L++ H     
Sbjct:   179 RSLSIGWVRLE--NLHSLLSKSPSLQSLSIKNCWG---VDITSMAGQFRELVIEHSDFSY 233

Query:   251 LGIELWLPRLQYFEYAGKMVPFDMRGMDDL-EVVVLD------YRLDTRYS-YNGDDIES 302
             +     LPR+  F+Y+G++  F    ++ +   V LD      Y L ++ S  +G+ I  
Sbjct:   234 MQCAFELPRIHSFKYSGELFEFYFDVVNVIIPNVYLDFGEERVYDLQSQSSRISGEVISR 293

Query:   303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLI 362
             + N    A  L V    L++ P EC      L Q  +  HL L T +   E   II LL 
Sbjct:   294 IINDLRAAETLTVCPYILQVIP-ECEKPS-DLLQPMETRHLVLRTKMHTKEFNGIILLLN 351

Query:   363 SSPNITTLA--ISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICE 420
             + PN+ TL   I T              P +      T  S+   L+ V    F G   E
Sbjct:   352 NCPNLETLGFDILTPCPFSATSSDEGIDPKTYWMQKRTCKSLRKTLKVVVIRNFCGSSNE 411

Query:   421 IDLVKFLLRNS 431
             ++++++L+R++
Sbjct:   412 LNVLRYLIRSA 422

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2098088 DAF1 "AT3G62230" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 108/444 (24%), Positives = 187/444 (42%)

Query:     6 DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLH-CRSFELHEASFMMPDSRQ 64
             D +S   D L+++II+ L F +A    +S  +   R  W H CR  E    SF   +   
Sbjct:     8 DIISTLSDFLLVLIISNLSFKEA----LSTSRLSTR--WRHICR--ETRNISFREDEI-- 57

Query:    65 YWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWI 124
               ++    +   Y +R   + Y   V   V       +  F  RL  +S  + + +   I
Sbjct:    58 --VTFADDSVARYYQRAALVAYM--VGW-VNNFTGGVVESFELRLS-NSYAFEEGVTTLI 111

Query:   125 EIVLEKSVQELSLDFSDGDPVVPQPTLR-NPQYV-LPHFFYEQGMCIRVLNINSCGLGLC 182
             E  + K+V+ L LD S+   V      +  P  + LP  FY+    +  L +  C     
Sbjct:   112 EFAVSKNVKHLFLDLSEPRWVTNNDAAQLEPGLIKLPESFYKITSLV-TLKLFGCRFEPS 170

Query:   183 NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLI 242
                    + ++    +RL    +  +    P LE L++  C+ I    IT     L KL+
Sbjct:   171 RLAKPGMVKTMFFRWIRLEM--LSALIAKTPLLEILNIKNCWEIGLDAITGYNDRLMKLV 228

Query:   243 VRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDL-EVVVLDYRLDTRYSYNGDDIE 301
              ++C   +    L +P +Q F+Y GK+  F+    + L E   LDYR ++RY+ +   I 
Sbjct:   229 FKYCSFSAQQTTLDVPNIQIFKYFGKVYRFEFASANKLMEEAYLDYREESRYNVSAGAII 288

Query:   302 S--LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIIC 359
             S  L++  S A+   +    L++   EC    R L    +   L L T  E  E   I  
Sbjct:   289 SGFLYSMLS-AKTFTICPYVLQLIQ-ECEDPVR-LKAPMETRQLVLKTNFEPNEFVGIRF 345

Query:   360 LLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKIC 419
             +L SSP + TL+          +  P   P +     T++  +   L+ V+   F G   
Sbjct:   346 MLNSSPYLETLSFQMVGPRPIEEMVPQIDPEAYWGQNTSHECLKKTLKKVEVWSFYGGTH 405

Query:   420 EIDLVKFLLRNSRSIKELNIKQLI 443
             E+ ++++L+R  R ++ +++ Q I
Sbjct:   406 ELRVLEYLIRYGRMLERVDLYQPI 429

GO:0003674 "molecular_function" evidence=ND

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2081242 AT3G59240 "AT3G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 97/404 (24%), Positives = 179/404 (44%)

Query:    68 SIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIV 127
             S+  ++ ++YM  + R K+  FVDR +    +  L +FS  L   + I R+ I +WI  V
Sbjct:    55 SVWMQSPLVYMNEVHR-KFMDFVDRVLGLQGNSTLVRFS--LNCRNGIDRECIFRWISNV 111

Query:   128 LEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNF 187
             +E+ V +L L    G   V   ++  P  V   F  +  + +R+   N C +     V  
Sbjct:   112 IERGVSDLDL----GGNFVSNRSM--PSSV---FVSKSLVKLRIRTEN-CTIIDLEDVFL 161

Query:   188 IQLTSLALTRV--RLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRH 245
              +L +L L+ +  R     +  +   C  LE L++ + +       ++ +  L++L V H
Sbjct:   162 PKLKTLDLSSIWFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNRSMSSKTLKRLTV-H 220

Query:   246 CQSL--SLG-IELWLPRLQYFEYAGKMVP-FDMRGMDDLEVVVLDYRL---DTRYSYNGD 298
             C     S G I    P L YFEY   +   +++   D L    +  R+      ++  GD
Sbjct:   221 CSDWDRSPGSISFDTPNLVYFEYFDLVADKYEVVNFDSLVEASIGLRMRHHQRAHASYGD 280

Query:   299 ---DIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELA 355
                +  +LF   S+ RILQ+ ++AL++  T C  C   +  F +L HLT+ T  +     
Sbjct:   281 LVVNATNLFMGISNVRILQLFSNALEVL-TFC--CA-PIPVFKKLIHLTVETDKD-VGWE 335

Query:   356 AIICLLISSPNITTLAI------STGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECV 409
             ++  LL + PN+ TL        ST     T           R  + ++   +L  L+  
Sbjct:   336 SLPALLKNCPNLETLVFKGLHHRSTSKCQDTDGCLCKSSKDIRSCLSSSPVKVLKILKFG 395

Query:   410 QFEGFTG-KICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSE 452
             +   + G +  +++LVK+ L    +++++ +    R +  V S+
Sbjct:   396 EVASYFGDEEKQLELVKYFLETMPNLEQMILHYNTRISEGVKSQ 439

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 79/356 (22%), Positives = 154/356 (43%)

Query:    90 VDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQP 149
             +++ +    +  +T F   +  +SN   Q +D WIE  L ++VQ LS+   D        
Sbjct:    78 MNQTLTSYTAPIITSFKLVMDLNSNTVPQ-VDSWIEFALSRNVQNLSVFVRD-------- 128

Query:   150 TLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAME 206
                +  Y  P  FY     +++L++      +   C  V++  L +L L   ++   ++ 
Sbjct:   129 FTYSKTYRFPDIFYLSSS-LKLLDVTLDFFDMIPTCT-VSWKSLRNLTLRFCQIPDESIH 186

Query:   207 NIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYA 266
             NI   CP LE+L+L  C  + +++++ ++  LR+L +      +  + +  P + Y    
Sbjct:   187 NILSGCPILESLTLDTCRLLERLDLS-KSPNLRRLDINQQYRRTGPVAIVAPHIYYLRLT 245

Query:   267 GKMVP---FDMRGMDDLEVVVLDYRLD--TRYSYNGDDIESLFNPFSDARILQVSTSALK 321
                 P    D+  + +  + ++   L   T   Y    +E L + F + + L V  + L+
Sbjct:   246 YSSTPSTIVDVSSLSEANLTIISSLLSPLTADGYQTMALEML-SKFHNVKRLTVGETLLQ 304

Query:   322 IFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP 381
             I      L G   F   +++ LT+ T   R  +  I  LL +SP +  L  ST  + H  
Sbjct:   305 ILSL-AELRGVP-FPTLKVQTLTVKTEFVRSVIPGISRLLQNSPGLKKLRPSTMKMHHLK 362

Query:   382 DFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKEL 437
                P+    S  E++ T+  I   L C      T K+     +  +LRN+++++ +
Sbjct:   363 GLYPDQCWRSTCEVFPTSKEIYKMLGC---NDATLKLVA-SFMDLVLRNAKTLERM 414

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 72/339 (21%), Positives = 139/339 (41%)

Query:   107 FRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQG 166
             F L   + +    +D+WI  VL++ V  L+L F D +           +Y LP+      
Sbjct:    92 FSLNVKTGVDPDRVDRWICNVLQRGVSHLAL-FMDFEE----------EYSLPYEISVSK 140

Query:   167 MCIRVLNINSCGLGLCNFVNFI-QLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYR 225
               + +       L L +   F+  L +L L  V       + +   CP LE L L+    
Sbjct:   141 TLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEW 200

Query:   226 IFKVEITLRTLGLRKLIVRHCQSLSLG-IELWLPRL---QYFEYAGKMVPF-DMRGMDDL 280
               +  + L +  L+ L +   +   LG +    P L    Y++Y  +  P  +++ + ++
Sbjct:   201 KDR-NVILSSSSLKNLKITS-EDGCLGTLSFDTPNLVFLDYYDYVAEDYPIVNLKNLVEV 258

Query:   281 EVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQL 340
              + ++    D R +   D++ +L +   +A I  +S    ++    C      +  F  L
Sbjct:   259 GINLV-LTAD-RINRARDNVWNLIHGIQNAEIFHISPVTFEVLSLSC----EAMPVFKNL 312

Query:   341 EHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNG 400
               L + T +++    A+  LL + PN+ TL +  G ++HT   +                
Sbjct:   313 TTLNIRTVMQQ-GWQAMPLLLKNCPNLETLYL--GGLLHTVTNKCGDVCDCIPRKKKGRS 369

Query:   401 SILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNI 439
              +   +  +Q +GF G I E+ ++K  L    S+KE+ I
Sbjct:   370 LMACPVNKIQIQGFRGTIREVHMIKHFLDFCPSLKEMEI 408

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116362 AT4G27050 "AT4G27050" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 97/384 (25%), Positives = 163/384 (42%)

Query:     4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSR 63
             +TD +S+  DD++  I++ +P   A    +  K+W  R+L     S +  E     PD++
Sbjct:     2 DTDLISNLPDDVLGKILSLVPTKLAAATSVLSKRW--RNLLPLVDSLDFDETMLFYPDNK 59

Query:    64 QYWLSIGRRTQVMYMKRIGRLKYF-HFVDRAVCRLASEFLT-KFSFRLYYSSNIYRQNID 121
                   G      Y     R   F HFVD+ +  L++  LT KFS + Y+  +  R  I+
Sbjct:    60 D-----GEDEASSYESGQRRRHSFSHFVDKTLALLSNAPLTEKFSLKCYHEDDGAR--IN 112

Query:   122 KWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNP--QYVLPHFFYEQGMCIRVLNINSCGL 179
             +WI   LE+   EL+L+ ++  P+  Q    N   +  +   FY  G    +L       
Sbjct:   113 RWIRTALERGCLELNLEAANYLPIDSQYFTSNTLVKLTISDGFYPGG---HLLPFGG--- 166

Query:   180 GLCNFVNFIQLTSLALTRVRLSWAAMENI-AHNCPFLETLSLVECYRIFKVEITLRTLGL 238
                  V F  L +L L  V  +   M N   H CP LE L L   +  +     ++ + +
Sbjct:   167 -----VFFPALKTLTLVSVCFTSVEMINFFIHGCPALEELFLC-VWMQYMSSPNVKRVTI 220

Query:   239 RKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGD 298
                     Q  S+ ++   P L Y +Y+  +       +D L    LD RL     Y+ D
Sbjct:   221 TSDFDDDIQRPSMVLKT--PSLVYLDYSSYVAGNYYVVLDSLVEARLDLRLYEPIIYDED 278

Query:   299 ---------DIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL 349
                      +I +L       +IL +S S+L++F   C  C   + +   L +L++ +  
Sbjct:   279 GLWNAEVFGNITNLIEAIRTIKILHLSPSSLEVF-YYC--CDLPVLE--DLVNLSIESDK 333

Query:   350 ER-FELAAIICLLISSPNITTLAI 372
             E+ +E+     LL  SPN+ TL +
Sbjct:   334 EKGWEVMPR--LLNKSPNLQTLVV 355

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197674 AT1G61330 "AT1G61330" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 78/329 (23%), Positives = 136/329 (41%)

Query:   123 WIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLC 182
             W++  L K+++EL LDFS    V+  P   N         +     + VL +  C   + 
Sbjct:   102 WVDTCLRKNIKELVLDFSSSKKVMEIPL--N---------FSSSETLTVLKLQWCRFEIP 150

Query:   183 NFV--NFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRK 240
             N +      L +L+L R  ++   +++I +NC  LE+L LV+C       +T+     +K
Sbjct:   151 NNLPKGLRLLKTLSLMRTEVTNEMIDSIFNNCIHLESLELVKCQMSGNGILTIYAHDHKK 210

Query:   241 L--IVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGD 298
                +V  C    L I L  P L+ ++Y G     ++  ++ LE     Y    R  ++ D
Sbjct:   211 FKSLVVSCMPNLLSIFLDAPTLECYKYDGYAKTINVLKVNALEEAEFHYSRSKR-RHSSD 269

Query:   299 DIESLFNPFSDARILQVSTSALKIFPTECLLCGR---QLFQFWQLEHLTLNTGLERF-EL 354
              +       S    L  +   L+   T   L G+    LF+F  L    +      F  L
Sbjct:   270 TVVDSMLACSAVHALTTTNILLEAI-TYRYLKGKLEKPLFKFENLREFKIFFKAPTFCTL 328

Query:   355 AAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLS-RGEIWTT--NGSILDHLECVQF 411
               I   L   P +    I        P     ++ +  + +I  T  N  +L  L  V+ 
Sbjct:   329 FDIAEFLKECPKLEQFIIDIQNFTFEPQMY--FWEIHHKAQIQNTSNNNYLLKCLTDVKI 386

Query:   412 EGFTGKICEIDLVKFLLRNSRSIKELNIK 440
              G+ G   E+D+V+F ++N+ S+K L ++
Sbjct:   387 IGYKGHWHELDIVEFFVKNAPSLKRLELQ 415

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 83/371 (22%), Positives = 157/371 (42%)

Query:    83 RLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDG 142
             +LK+    ++ +    +  +T F   +  + N   Q +D WIE  L ++VQ LS+   D 
Sbjct:    73 KLKHGE-TNQTLTSYTAPIITSFKLVMDLNDNTVPQ-VDSWIEFALSRNVQNLSVFVRD- 129

Query:   143 DPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL---CNFVNFIQLTSLALTRVR 199
                          Y  P  FY     ++ L++      +   C  V++  L +L L   +
Sbjct:   130 -------FTYTKTYRFPDIFYISSS-LKQLDVTLDFFDMIPTCA-VSWKSLRNLTLRFCQ 180

Query:   200 LSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPR 259
             +   +M NI   CP LE+L+L  C  + +++++ ++  LR+L +      +  I +  P 
Sbjct:   181 IPDESMHNILSGCPILESLTLDTCRLLERLDLS-KSPNLRRLDINRQYRRTGPIAIVAPH 239

Query:   260 LQYFEYAGKMVP---FDMRGMDDLEVVVLDYRLD---TRYSYNGDDIESLFNPFSDARIL 313
             + Y        P    D+  + +  + ++  RL    T   Y    +E L + F + + L
Sbjct:   240 IYYLRLTYSSTPSTIVDVSSLSEANLNIISDRLLSPLTADRYQTMALEML-SKFHNVKRL 298

Query:   314 QVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAIS 373
              V  + L+I      L G   F   +++ LT+ T   R  +  I  LL +SP +  L + 
Sbjct:   299 TVGETILQILSL-AELRGVP-FPTLKVQTLTVKTEFVRSVIPGISRLLQNSPGLKKLTLH 356

Query:   374 TGAIMHT-PDFRP--NYFP----LSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKF 426
             T  + H   +  P    +P     S  E++ T+  I   L C      T K+     +  
Sbjct:   357 TLQLSHDIMEMHPLKGLYPDQCWRSTCEVFPTSKEIYKMLGC---NDATSKLVA-SFMNL 412

Query:   427 LLRNSRSIKEL 437
             +LRN+++++ +
Sbjct:   413 VLRNAKTLERM 423

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166295 AT5G62970 "AT5G62970" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
 Identities = 67/271 (24%), Positives = 126/271 (46%)

Query:     6 DPLSDFHDD-LIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEAS-FMMPDSR 63
             D +S F DD L++ I++FLPF  A    +  K+W  + LW+     E  E S +    S 
Sbjct:     2 DKISGFSDDELLVKILSFLPFKFAITTSVLSKQW--KFLWMRVPKLEYDEDSMYSFEYSF 59

Query:    64 QYWL----SIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYR-Q 118
             +Y+L     +   T  +  +   R++   F+++ +   +S  +   S RL + + +++ +
Sbjct:    60 RYFLPKAKEVDSETYSIVSESGHRMR--SFIEKNLPLHSSPVIE--SLRLKFFTEVFQPE 115

Query:   119 NIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG 178
             +I  W+EI + +  QELS+DF       P+    N   +LP   Y     + +   N+  
Sbjct:   116 DIKLWVEIAVSRCAQELSVDF------FPKEK-HNA--LLPRNLYTCKSLVTLKLRNNIL 166

Query:   179 LGLCNFVNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECY---RIFKVEITLR 234
             + + +  +   L  L L RV      +++ +  NC  LE L +VE      + K+++ + 
Sbjct:   167 VDVPHVFSLPSLKILHLERVTYGDGESLQRLLSNCSVLEDL-VVELDTGDNVRKLDVIIP 225

Query:   235 TL-GLRKLIVRHCQSLSLGIELWLPRLQYFE 264
             +L  L   + R+C      I+   P L+YF+
Sbjct:   226 SLLSLSFGMSRYCAYEGYRIDT--PSLKYFK 254

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	472
pfam08387	51	pfam08387, FBD, FBD	2e-06
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.001

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 27/39 (69%)

Query: 401 SILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNI 439
            +L  LE V++ G+ G+  E++L K++L N+R +K++ I
Sbjct: 11  CLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 405 HLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNI 439
            LE ++ +G+ G   E +LVK+ L N+  +K+L I
Sbjct: 6   SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTI 40

Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
KOG4341	483	consensus F-box protein containing LRR [General fu	99.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.58
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.15
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.85
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	98.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.58
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.38
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.18
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.09
KOG4341	483	consensus F-box protein containing LRR [General fu	98.08
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.38
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.21
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.0
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.88
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.66
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.13
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.23
PLN03150	623	hypothetical protein; Provisional	93.15
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.15
PRK15386	426	type III secretion protein GogB; Provisional	91.69
PLN03150	623	hypothetical protein; Provisional	91.58
PRK15386	426	type III secretion protein GogB; Provisional	91.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.41
KOG2997	366	consensus F-box protein FBX9 [General function pre	90.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	89.38
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.08
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.78
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	85.73

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.65  E-value=9.2e-18  Score=157.70  Aligned_cols=350  Identities=18%  Similarity=0.210  Sum_probs=196.3

Q ss_pred             CCchHHHHHHHhcCChhhHhhhhhhccccc----ccccccccceeEeecCcccCcccchhhcccccchhhhhHhhhhhhh
Q 038350           10 DFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLK   85 (472)
Q Consensus        10 ~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (472)
                      .||.|++..|||+|+++..+|++.+|+-|.    |..-|..+..++|...--                            
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~----------------------------  125 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD----------------------------  125 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC----------------------------
Confidence            499999999999999999999999999998    334588777776653221                            


Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccC
Q 038350           86 YFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQ  165 (472)
Q Consensus        86 ~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~  165 (472)
                        ..|-..+.++.|..+++++++.....+  ...+....  ...+++++|.+....  .        ...-.+-..--.|
T Consensus       126 --g~VV~~~~~Rcgg~lk~LSlrG~r~v~--~sslrt~~--~~CpnIehL~l~gc~--~--------iTd~s~~sla~~C  189 (483)
T KOG4341|consen  126 --GGVVENMISRCGGFLKELSLRGCRAVG--DSSLRTFA--SNCPNIEHLALYGCK--K--------ITDSSLLSLARYC  189 (483)
T ss_pred             --CcceehHhhhhccccccccccccccCC--cchhhHHh--hhCCchhhhhhhcce--e--------ccHHHHHHHHHhc
Confidence              112223445567788999988876543  22322221  224666666543211  0        0000111111124


Q ss_pred             CceEEEEEEeeee-ecCC----CCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCcee---EEEeeCCC
Q 038350          166 GMCIRVLNINSCG-LGLC----NFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFK---VEITLRTL  236 (472)
Q Consensus       166 ~~~L~~L~L~~~~-l~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~---l~i~~~~~  236 (472)
                      . .|++|+|.+|. ++..    -..+|++|++|++++| .+.+++++.+..+|..|+.+.+.+|...+.   ..+.+.++
T Consensus       190 ~-~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~  268 (483)
T KOG4341|consen  190 R-KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL  268 (483)
T ss_pred             c-hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence            4 55555555542 1111    1145555555555555 344455555555555555555555544332   12233333


Q ss_pred             CeeEEEEeeccCCcee-----EEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCc
Q 038350          237 GLRKLIVRHCQSLSLG-----IELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR  311 (472)
Q Consensus       237 ~L~~L~l~~c~~~~~~-----~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~  311 (472)
                      -+.++++..|. .+..     +.-.+..|+.+.+.+.                    ..    .....+..+...+++|+
T Consensus       269 ~i~~lnl~~c~-~lTD~~~~~i~~~c~~lq~l~~s~~--------------------t~----~~d~~l~aLg~~~~~L~  323 (483)
T KOG4341|consen  269 EILKLNLQHCN-QLTDEDLWLIACGCHALQVLCYSSC--------------------TD----ITDEVLWALGQHCHNLQ  323 (483)
T ss_pred             Hhhccchhhhc-cccchHHHHHhhhhhHhhhhcccCC--------------------CC----CchHHHHHHhcCCCceE
Confidence            44444444443 1111     1111223333333221                    11    11235668888899999


Q ss_pred             EEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCC
Q 038350          312 ILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLS  391 (472)
Q Consensus       312 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~  391 (472)
                      .|.+.++.  .++..+-.  .-...+..|+.|.+..+....+. .+..+-.+||.||+|.++.+..  +.|  +      
T Consensus       324 ~l~l~~c~--~fsd~~ft--~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~--itD--~------  388 (483)
T KOG4341|consen  324 VLELSGCQ--QFSDRGFT--MLGRNCPHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCEL--ITD--E------  388 (483)
T ss_pred             EEeccccc--hhhhhhhh--hhhcCChhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhh--hhh--h------
Confidence            99997663  23321211  11246788999998876554433 7888999999999999997742  111  0      


Q ss_pred             cccccccccc-cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccccCcc
Q 038350          392 RGEIWTTNGS-ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSS  448 (472)
Q Consensus       392 ~~~~w~~~~~-~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~  448 (472)
                       +.-=..... ...+|+.+++.+......+  .+++ +.++++||++.++..+..+.+
T Consensus       389 -gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~-l~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  389 -GIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEH-LSICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             -hhhhhhhccccccccceeeecCCCCchHH--HHHH-HhhCcccceeeeechhhhhhh
Confidence             000011111 6679999999998775332  3343 358999999999888876544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.3e-16  Score=142.12  Aligned_cols=280  Identities=16%  Similarity=0.174  Sum_probs=146.5

Q ss_pred             CCCCchHHHHHHHhcCChhhHhhhhhhccccc----ccccccccceeEeecCcccCcccchhhcccccchhhhhHhhhhh
Q 038350            8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGR   83 (472)
Q Consensus         8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (472)
                      +..|||||+..||+.|+-+|..+.+.|||||+    |..+|..+   ++....+.+                        
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p------------------------  150 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP------------------------  150 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh------------------------
Confidence            67899999999999999999999999999998    33345433   111111110                        


Q ss_pred             hhHHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccc
Q 038350           84 LKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFY  163 (472)
Q Consensus        84 ~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~  163 (472)
                          +...+.+.    .+|..|++.-....   ...+..... .++..++.+++.....           ..-.+--.+.
T Consensus       151 ----~~l~~l~~----rgV~v~Rlar~~~~---~prlae~~~-~frsRlq~lDLS~s~i-----------t~stl~~iLs  207 (419)
T KOG2120|consen  151 ----DVLGRLLS----RGVIVFRLARSFMD---QPRLAEHFS-PFRSRLQHLDLSNSVI-----------TVSTLHGILS  207 (419)
T ss_pred             ----hHHHHHHh----CCeEEEEcchhhhc---Cchhhhhhh-hhhhhhHHhhcchhhe-----------eHHHHHHHHH
Confidence                11112211    23455554432221   111111111 1233455555543211           1111222333


Q ss_pred             cCCceEEEEEEeeeeecCC---CCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCcee---EEEeeCCC
Q 038350          164 EQGMCIRVLNINSCGLGLC---NFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFK---VEITLRTL  236 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~~~---~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~---l~i~~~~~  236 (472)
                      .|. .|+.|+|.+..+..+   ..+.-.+|+.|+|+.| .|+..+++-++++|..|.+|+|..|.-...   +.++.-.+
T Consensus       208 ~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  208 QCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            455 666666666666532   2345566667766655 455666666667777777777766643322   11122233


Q ss_pred             CeeEEEEeeccC-----CceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCc
Q 038350          237 GLRKLIVRHCQS-----LSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR  311 (472)
Q Consensus       237 ~L~~L~l~~c~~-----~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~  311 (472)
                      +|+.|++++|.-     .+..+.-.+|+|..|++++                    +...     .+.+...+..++.|+
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD--------------------~v~l-----~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD--------------------SVML-----KNDCFQEFFKFNYLQ  341 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc--------------------cccc-----CchHHHHHHhcchhe
Confidence            666666665541     1112223344444444443                    2111     113455566788888


Q ss_pred             EEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEE
Q 038350          312 ILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLA  371 (472)
Q Consensus       312 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~  371 (472)
                      +|.++-+. ...+.   .- ..+...+.|+.|++..+.+..   .+.-+.+.||+|+.-.
T Consensus       342 ~lSlsRCY-~i~p~---~~-~~l~s~psl~yLdv~g~vsdt---~mel~~e~~~~lkin~  393 (419)
T KOG2120|consen  342 HLSLSRCY-DIIPE---TL-LELNSKPSLVYLDVFGCVSDT---TMELLKEMLSHLKINC  393 (419)
T ss_pred             eeehhhhc-CCChH---He-eeeccCcceEEEEeccccCch---HHHHHHHhCccccccc
Confidence            88887653 11110   01 224556788888887765543   5666677888876543

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.15  E-value=1e-10  Score=86.48  Aligned_cols=69  Identities=28%  Similarity=0.420  Sum_probs=60.7

Q ss_pred             ccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccccCcchhhHHHHHHHHhhhccCCeEEeeC
Q 038350          403 LDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS  472 (472)
Q Consensus       403 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~~~~~~~~~l~~~~~as~~~~i~~~  472 (472)
                      ..+|++|+|.||.|..+|+++++|+++||+.||+|+|.......+. ...+.+++..++|||++|+|.|.
T Consensus         4 ~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~-~~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        4 LSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDE-KLEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             hheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccH-HHHHHHHHHhCcCCCCceEEEeC
Confidence            4689999999999999999999999999999999999987764433 35677899999999999999873

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.97  E-value=7.4e-10  Score=123.91  Aligned_cols=202  Identities=18%  Similarity=0.172  Sum_probs=108.3

Q ss_pred             cCCcccc-cCCceEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-Eee
Q 038350          157 VLPHFFY-EQGMCIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-ITL  233 (472)
Q Consensus       157 ~lp~~~~-~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~~  233 (472)
                      .+|..++ .+. +|++|+|+++.+. ..+...+++|++|+|+++.+.. .+...+.++++|+.|++.+|.-.+.+. .-+
T Consensus       108 ~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~  185 (968)
T PLN00113        108 PIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT  185 (968)
T ss_pred             cCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhh
Confidence            5676666 556 8888888887664 2223567888888888777652 223336677888888888775322211 112


Q ss_pred             CCCCeeEEEEeeccCC--ceeEEEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccC
Q 038350          234 RTLGLRKLIVRHCQSL--SLGIELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPF  307 (472)
Q Consensus       234 ~~~~L~~L~l~~c~~~--~~~~~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l  307 (472)
                      .+++|+.|.+.+|...  ....--..++|+.|.+.+..    .+-.++++++|+.+++..+....      .++..+..+
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l  259 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG------PIPSSLGNL  259 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc------ccChhHhCC
Confidence            3457777777777531  11111235567777765531    12234566677777665432111      233345566


Q ss_pred             CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          308 SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       308 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ++|++|.++.+.+.     +..| ..+..+.+|++|++..+.-.   ..++..+..+++|+.|++..+
T Consensus       260 ~~L~~L~L~~n~l~-----~~~p-~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        260 KNLQYLFLYQNKLS-----GPIP-PSIFSLQKLISLDLSDNSLS---GEIPELVIQLQNLEILHLFSN  318 (968)
T ss_pred             CCCCEEECcCCeee-----ccCc-hhHhhccCcCEEECcCCeec---cCCChhHcCCCCCcEEECCCC
Confidence            66666666655432     1122 22334455555555432110   123334455556666655544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.85  E-value=3.2e-09  Score=118.79  Aligned_cols=249  Identities=16%  Similarity=0.087  Sum_probs=150.2

Q ss_pred             CCcccccCCceEEEEEEeeeeec---CCC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-Ee
Q 038350          158 LPHFFYEQGMCIRVLNINSCGLG---LCN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-IT  232 (472)
Q Consensus       158 lp~~~~~~~~~L~~L~L~~~~l~---~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~  232 (472)
                      +|..+.... +|++|+|+++.+.   |.. +.++++|++|+|+++.+.+..-   ....++|+.|++.+|.-.+.+. ..
T Consensus        85 ~~~~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~  160 (968)
T PLN00113         85 ISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDI  160 (968)
T ss_pred             CChHHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHH
Confidence            344444455 8999999888664   223 3488899999998887753211   1357889999998875322221 12


Q ss_pred             eCCCCeeEEEEeeccC--CceeEEEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhccc
Q 038350          233 LRTLGLRKLIVRHCQS--LSLGIELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNP  306 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~~--~~~~~~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~  306 (472)
                      ..+++|+.|.+++|..  .........++|++|++.+..    .+-.++++++|+.+++..+....      .++..+..
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~  234 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG------EIPYEIGG  234 (968)
T ss_pred             hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC------cCChhHhc
Confidence            3356889999888863  112222356788888887642    12345677888888776542211      23345677


Q ss_pred             CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCC
Q 038350          307 FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPN  386 (472)
Q Consensus       307 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~  386 (472)
                      +++|++|+++.+.+.     +..| ..+..+.+|+.|.+..+.-..   .++.-+..+++|+.|+++.+......     
T Consensus       235 l~~L~~L~L~~n~l~-----~~~p-~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~-----  300 (968)
T PLN00113        235 LTSLNHLDLVYNNLT-----GPIP-SSLGNLKNLQYLFLYQNKLSG---PIPPSIFSLQKLISLDLSDNSLSGEI-----  300 (968)
T ss_pred             CCCCCEEECcCceec-----cccC-hhHhCCCCCCEEECcCCeeec---cCchhHhhccCcCEEECcCCeeccCC-----
Confidence            888999998776543     2234 445667788888886432111   23344567889999988776321110     


Q ss_pred             CCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          387 YFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       387 ~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                           +  .|   ...+++|+.+.+.+-.-..    .+...+.+.++|+.+.+.....
T Consensus       301 -----p--~~---~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        301 -----P--EL---VIQLQNLEILHLFSNNFTG----KIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             -----C--hh---HcCCCCCcEEECCCCccCC----cCChhHhcCCCCCEEECcCCCC
Confidence                 0  00   1145788888876532111    1112346789999999976543

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=98.79  E-value=7.4e-09  Score=70.34  Aligned_cols=39  Identities=33%  Similarity=0.735  Sum_probs=37.5

Q ss_pred             cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350          402 ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK  440 (472)
Q Consensus       402 ~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~  440 (472)
                      ..+|||.|+|.||.|..+|+++++|+++||++||+|+|.
T Consensus        12 l~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   12 LLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             hhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            668999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.72  E-value=1.6e-09  Score=106.75  Aligned_cols=205  Identities=18%  Similarity=0.188  Sum_probs=115.5

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeecC---CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE  230 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~  230 (472)
                      .-..+|....... +|+.|.|.++.++.   ..+.-+|.|++|+|+.+.++.-... -+..-+++++|+|.+.. ++.+.
T Consensus       113 ~Lt~IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L~La~N~-It~l~  189 (873)
T KOG4194|consen  113 ELTRIPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKLNLASNR-ITTLE  189 (873)
T ss_pred             hhhhccccccccc-ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEEeecccc-ccccc
Confidence            3445565443334 67777777775542   3346677777777777655410000 02223567777777653 33332


Q ss_pred             E--eeCCCCeeEEEEeeccC-CceeEE-EeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHh
Q 038350          231 I--TLRTLGLRKLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIES  302 (472)
Q Consensus       231 i--~~~~~~L~~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  302 (472)
                      .  ...+.+|..|.+.+... .+.... ...|+|+.|++.....    .+.+.++++|+.+.+.-...+.-++      .
T Consensus       190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D------G  263 (873)
T KOG4194|consen  190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------G  263 (873)
T ss_pred             cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC------c
Confidence            2  11223666677766653 122222 2377788888765322    3456778888877664322211111      3


Q ss_pred             hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350          303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAI  377 (472)
Q Consensus       303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~  377 (472)
                      .+.++.++++|+|..+.++....      .++..+..|++|+++.+- ......+    -..||+|+.|+++.+..
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~------g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNE------GWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRI  329 (873)
T ss_pred             ceeeecccceeecccchhhhhhc------ccccccchhhhhccchhhhheeecch----hhhcccceeEecccccc
Confidence            46678888888888776654433      456667788888886431 1111111    14589999999988854

>PLN03210 Resistant to P

Probab=98.67  E-value=2.6e-08  Score=112.50  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeEEEe
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKVEIT  232 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~  232 (472)
                      ..+|..+ ... +|++|++.++.+.  +.++..+++|+.|+|+++. +.  .+.. ++.+++|+.|++.+|..+..+...
T Consensus       602 ~~lP~~f-~~~-~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        602 RCMPSNF-RPE-NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             CCCCCcC-Ccc-CCcEEECcCccccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcccEEEecCCCCccccchh
Confidence            3455543 334 7777777776554  3445667777777776542 22  1111 455677777777777655433221


Q ss_pred             -eCCCCeeEEEEeeccCCceeEE--EeCCCeeEEEEee
Q 038350          233 -LRTLGLRKLIVRHCQSLSLGIE--LWLPRLQYFEYAG  267 (472)
Q Consensus       233 -~~~~~L~~L~l~~c~~~~~~~~--i~~p~L~~L~l~~  267 (472)
                       ..+++|+.|.+.+|. .+..+.  +..++|++|.++|
T Consensus       677 i~~L~~L~~L~L~~c~-~L~~Lp~~i~l~sL~~L~Lsg  713 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCE-NLEILPTGINLKSLYRLNLSG  713 (1153)
T ss_pred             hhccCCCCEEeCCCCC-CcCccCCcCCCCCCCEEeCCC
Confidence             223466666666665 222221  2445566666555

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.58  E-value=1e-08  Score=101.19  Aligned_cols=70  Identities=24%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +...++|...|...+++++|+|.++.+.   ...|.++.+|.+|.|++++++. --...+++.|.||.|+|.+.
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhcccc
Confidence            4455666666666559999999998776   3557888899999999998872 12344677899999999874

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.56  E-value=2.4e-08  Score=66.92  Aligned_cols=32  Identities=25%  Similarity=0.606  Sum_probs=29.0

Q ss_pred             CCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      |+.||+||+.+||++|+.+|.++++.|||+|+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~   32 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWR   32 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.38  E-value=4.7e-07  Score=87.83  Aligned_cols=245  Identities=16%  Similarity=0.082  Sum_probs=118.1

Q ss_pred             eEEEEEEeeeeecCC-------CCCCcccccEEEeeeEEeC--hHH---HHHHHhcCCCcceEeecccCCceeE-----E
Q 038350          168 CIRVLNINSCGLGLC-------NFVNFIQLTSLALTRVRLS--WAA---MENIAHNCPFLETLSLVECYRIFKV-----E  230 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~-------~~~~~~~L~~L~L~~~~~~--~~~---l~~l~~~cp~Le~L~l~~c~~~~~l-----~  230 (472)
                      .|++|.+.++.+.+.       .+..+++|++|++..+.+.  ...   +...+..++.|+.|++.+|.-....     .
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            577777777766421       1245566777777666554  222   2233445667777777776532110     0


Q ss_pred             EeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCC-CceeEEEEEEeecccccCchhhHHhhcccCCC
Q 038350          231 ITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGM-DDLEVVVLDYRLDTRYSYNGDDIESLFNPFSD  309 (472)
Q Consensus       231 i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~  309 (472)
                      +... ++|++|++.+|........              ...-.+..+ ++|+++++..+.-..  .....+...+..+++
T Consensus       104 l~~~-~~L~~L~ls~~~~~~~~~~--------------~l~~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~  166 (319)
T cd00116         104 LLRS-SSLQELKLNNNGLGDRGLR--------------LLAKGLKDLPPALEKLVLGRNRLEG--ASCEALAKALRANRD  166 (319)
T ss_pred             Hhcc-CcccEEEeeCCccchHHHH--------------HHHHHHHhCCCCceEEEcCCCcCCc--hHHHHHHHHHHhCCC
Confidence            0011 2466666666542100000              000011223 445555444332110  001134455666677


Q ss_pred             CcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCC
Q 038350          310 ARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYF  388 (472)
Q Consensus       310 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~  388 (472)
                      |++|+++++.+..... ...+ ..+..+.+|++|.+..+. .......+...+..+|+|+.|++..+......       
T Consensus       167 L~~L~l~~n~l~~~~~-~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~-------  237 (319)
T cd00116         167 LKELNLANNGIGDAGI-RALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG-------  237 (319)
T ss_pred             cCEEECcCCCCchHHH-HHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-------
Confidence            8888887665432100 0011 123345678888876542 22334456666777888888888776311000       


Q ss_pred             CCCccccccccc-c-cccCccEEEEEeeecCh-hhHHHHHHHHhcCccceEEEEeeccc
Q 038350          389 PLSRGEIWTTNG-S-ILDHLECVQFEGFTGKI-CEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       389 ~~~~~~~w~~~~-~-~~~~L~~v~i~~f~g~~-~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                           ....... . ....|+.+.+.+..-++ +...+.+. +.+.+.|+.+.+....-
T Consensus       238 -----~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         238 -----AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKF  290 (319)
T ss_pred             -----HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCC
Confidence                 0000000 0 13577777776643322 22344443 34457788777765544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.38  E-value=4.5e-07  Score=102.57  Aligned_cols=110  Identities=12%  Similarity=0.116  Sum_probs=75.4

Q ss_pred             ccCCcccccCCceEEEEEEeeee-ec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEee
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCG-LG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITL  233 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~-l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~  233 (472)
                      ..+|..+..+. +|++|+|+++. +. .+.+..+++|++|+|.+|..- ..+..-+..+++|+.|++.+|..++.+....
T Consensus       624 ~~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        624 EKLWDGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             cccccccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            34565555566 89999998763 33 345678899999999887432 1333446778899999999998877665444


Q ss_pred             CCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeee
Q 038350          234 RTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGK  268 (472)
Q Consensus       234 ~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~  268 (472)
                      .+++|+.|.+.+|. .+..+.-..++|++|.+.+.
T Consensus       702 ~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n  735 (1153)
T PLN03210        702 NLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDET  735 (1153)
T ss_pred             CCCCCCEEeCCCCC-CccccccccCCcCeeecCCC
Confidence            56688999998886 34444333457777777653

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.23  E-value=4.9e-07  Score=87.71  Aligned_cols=272  Identities=17%  Similarity=0.099  Sum_probs=148.9

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec--CC-------CCCCcccccEEEeeeEEe
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG--LC-------NFVNFIQLTSLALTRVRL  200 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~-------~~~~~~~L~~L~L~~~~~  200 (472)
                      .+++++.+.......        .....++..+...+ +|++|.++++.+.  +.       .+..+++|+.|+++++.+
T Consensus        23 ~~L~~l~l~~~~l~~--------~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          23 LCLQVLRLEGNTLGE--------EAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             hhccEEeecCCCCcH--------HHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            458888876332110        11234555555555 8999999887665  22       245688999999999988


Q ss_pred             C---hHHHHHHHhcCCCcceEeecccCCce-eEE----EeeCC-CCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeece
Q 038350          201 S---WAAMENIAHNCPFLETLSLVECYRIF-KVE----ITLRT-LGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVP  271 (472)
Q Consensus       201 ~---~~~l~~l~~~cp~Le~L~l~~c~~~~-~l~----i~~~~-~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~  271 (472)
                      .   ...+..+..+ ++|+.|++.+|.-.. ...    ....+ ++|++|.+.+|........              ...
T Consensus        94 ~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------~~~  158 (319)
T cd00116          94 GPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE--------------ALA  158 (319)
T ss_pred             ChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--------------HHH
Confidence            6   3445555555 779999999986321 110    01122 5888888888863100000              000


Q ss_pred             EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc
Q 038350          272 FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER  351 (472)
Q Consensus       272 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  351 (472)
                      -.+..+++|+.+++..+.-..  .....+...+..+++|+.|+++.+.+..... .... ..+..+.+|++|++..+.- 
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~-~~~~~~~~L~~L~ls~n~l-  233 (319)
T cd00116         159 KALRANRDLKELNLANNGIGD--AGIRALAEGLKANCNLEVLDLNNNGLTDEGA-SALA-ETLASLKSLEVLNLGDNNL-  233 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCch--HHHHHHHHHHHhCCCCCEEeccCCccChHHH-HHHH-HHhcccCCCCEEecCCCcC-
Confidence            011223344444443221110  0011233344556789999998765432111 1111 2345577889998875421 


Q ss_pred             hhHHHHHHHHhc----CCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEee-ecChhhHHHHHH
Q 038350          352 FELAAIICLLIS----SPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGF-TGKICEIDLVKF  426 (472)
Q Consensus       352 ~~~~~l~~ll~~----~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f-~g~~~e~~~~~~  426 (472)
                       ....+..+...    .+.|++|++..+...   +   ...    ... ....+...+|+.+.+.+- -+.+....+++-
T Consensus       234 -~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~---~---~~~----~~l-~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         234 -TDAGAAALASALLSPNISLLTLSLSCNDIT---D---DGA----KDL-AEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             -chHHHHHHHHHHhccCCCceEEEccCCCCC---c---HHH----HHH-HHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence             11234444444    589999999887421   0   000    000 011114467888887652 234556778888


Q ss_pred             HHhcCccceEEEEeec
Q 038350          427 LLRNSRSIKELNIKQL  442 (472)
Q Consensus       427 ll~~~~~L~~l~i~~~  442 (472)
                      +..+.+.|+.+.|...
T Consensus       302 ~~~~~~~~~~~~~~~~  317 (319)
T cd00116         302 LLEPGNELESLWVKDD  317 (319)
T ss_pred             HhhcCCchhhcccCCC
Confidence            8888889998887543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=2.9e-08  Score=90.41  Aligned_cols=178  Identities=17%  Similarity=0.207  Sum_probs=117.2

Q ss_pred             eEEEEEEeeeeecCCC----CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE---eeCCCCeeE
Q 038350          168 CIRVLNINSCGLGLCN----FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI---TLRTLGLRK  240 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i---~~~~~~L~~  240 (472)
                      .|++|+|++-.++...    +..|..|+.|+|.+..++|.-. .-++.-.+|+.|+|.+|.|++...+   -..+.+|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            6999999887666322    3788899999999988876544 4466778999999999988765432   233558888


Q ss_pred             EEEeeccCCceeE----EEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEe
Q 038350          241 LIVRHCQSLSLGI----ELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVS  316 (472)
Q Consensus       241 L~l~~c~~~~~~~----~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~  316 (472)
                      |+++.|...-+.+    .--.++|..|.++|+...+                    +   ...+..+...+|+|..|+++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------------~---~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------------Q---KSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------------h---hhHHHHHHHhCCceeeeccc
Confidence            9999997411111    1125677788877753211                    0   12466777889999999998


Q ss_pred             cccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          317 TSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+..-  .. + .. ..+.+|+.|++|.++.|-.. .. ...-.+++-|.|..|++.++-
T Consensus       322 D~v~l--~~-~-~~-~~~~kf~~L~~lSlsRCY~i-~p-~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  322 DSVML--KN-D-CF-QEFFKFNYLQHLSLSRCYDI-IP-ETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccccc--Cc-h-HH-HHHHhcchheeeehhhhcCC-Ch-HHeeeeccCcceEEEEecccc
Confidence            76421  10 0 11 34567888899988766321 11 122236788889999888873

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.09  E-value=4.1e-07  Score=61.27  Aligned_cols=35  Identities=37%  Similarity=0.647  Sum_probs=29.3

Q ss_pred             CCCCchHHHHHHHhcCChhhHhhhhhhcccccccccc
Q 038350            8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLW   44 (472)
Q Consensus         8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~~~~w   44 (472)
                      +++||+|++.+||++|+.+|.++++.|||+|+  ++.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~--~~~   37 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWR--SLV   37 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHH--HHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHH--HHH
Confidence            46799999999999999999999999999999  654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.08  E-value=4.9e-08  Score=92.89  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=74.4

Q ss_pred             cccCCceEEEEEEeeeeec-CCC----CCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeEEE---e
Q 038350          162 FYEQGMCIRVLNINSCGLG-LCN----FVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKVEI---T  232 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~-~~~----~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i---~  232 (472)
                      +.+|..-|+.|+|.||.=. ...    ..+||++++|.+.+| .+++..+..+...|+.|+.|++..|..+++..+   .
T Consensus       133 ~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  133 ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            3455557999999988432 222    278999999999887 677899999899999999999999988776432   3


Q ss_pred             eCCCCeeEEEEeeccC----CceeEEEeCCCeeEEEEee
Q 038350          233 LRTLGLRKLIVRHCQS----LSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~~----~~~~~~i~~p~L~~L~l~~  267 (472)
                      ..+++|+.|.++.|..    +.+.+.-.+.+++.+...|
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG  251 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG  251 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence            3456999999999973    1222233344455554444

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.96  E-value=3.1e-06  Score=54.66  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=29.9

Q ss_pred             CchHHHHHHHhcCChhhHhhhhhhcccccccccc
Q 038350           11 FHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLW   44 (472)
Q Consensus        11 LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~~~~w   44 (472)
                      ||+|++..||++|+.+|.++++.|||+|+  .+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~--~~~   32 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWR--SLI   32 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh
Confidence            79999999999999999999999999999  543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=1e-06  Score=84.60  Aligned_cols=201  Identities=16%  Similarity=0.170  Sum_probs=122.8

Q ss_pred             eEEEEEEeeeeecCCC----CCCcccccEEEeeeEEeC-hHHHHHHHhcCCCcceEeecccCCceeE--EEeeCCCCeeE
Q 038350          168 CIRVLNINSCGLGLCN----FVNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECYRIFKV--EITLRTLGLRK  240 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~  240 (472)
                      .|+...|.++.+...+    ...|++++.|+|+.+-|. -..+..++...|+||.|+|+........  ......+.||.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            6777788877655322    367999999999988666 5678888999999999999976422111  11123459999


Q ss_pred             EEEeeccC---CceeEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350          241 LIVRHCQS---LSLGIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL  313 (472)
Q Consensus       241 L~l~~c~~---~~~~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L  313 (472)
                      |.+..|.+   ....+....|+|+.|.+.+...    .........|++++++-.....++     -......+++|+.|
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGYKVGTLPGLNQL  276 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----cccccccccchhhh
Confidence            99999986   3455678899999999876521    112233444677766643322222     11334567777777


Q ss_pred             EEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          314 QVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       314 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      .++.+.+..+..+........-.|++|+.|.+..+. ..++..+- -++..++|+.|.+...
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~-~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLN-HLRTLENLKHLRITLN  336 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccc-hhhccchhhhhhcccc
Confidence            776665554332110000112457788888876431 11121111 2455677777776554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.83  E-value=1e-05  Score=75.69  Aligned_cols=178  Identities=17%  Similarity=0.182  Sum_probs=102.3

Q ss_pred             CCCcccccEEEeeeEEeC---hHHHHHHHhcCCCcceEeecccCCceeE---EEeeCCCCeeEEEEeeccCCceeEEEeC
Q 038350          184 FVNFIQLTSLALTRVRLS---WAAMENIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRKLIVRHCQSLSLGIELWL  257 (472)
Q Consensus       184 ~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~~~~~~~i~~  257 (472)
                      +.++|.|++|+|+++.|.   .+.+..++++|..|++|.|.+|.. +..   .+..   .|.+|.       .....-+.
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~---al~~l~-------~~kk~~~~  156 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGR---ALFELA-------VNKKAASK  156 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHH---HHHHHH-------HHhccCCC
Confidence            356677888888888776   468899999999999999999842 211   1000   111111       00011223


Q ss_pred             CCeeEEEEeeeec--------eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccccccccc
Q 038350          258 PRLQYFEYAGKMV--------PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLL  329 (472)
Q Consensus       258 p~L~~L~l~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~  329 (472)
                      |+|+.|.......        --.+...|.|.++.+.....  ..+....+..-+..+++|+.|+|..+++..--. ...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I--~~eG~~al~eal~~~~~LevLdl~DNtft~egs-~~L  233 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI--RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-VAL  233 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc--cCchhHHHHHHHHhCCcceeeecccchhhhHHH-HHH
Confidence            4444444322100        01233345566665554321  111123455667788999999998776542110 011


Q ss_pred             ccCCCcccCCceeEEEecccC-c-hhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          330 CGRQLFQFWQLEHLTLNTGLE-R-FELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       330 ~~~~l~~~~~L~~L~l~~~~~-~-~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      . ..++.+++|+.|.+..|+- . .....+..+-+..|+|+.|.+.++.
T Consensus       234 a-kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  234 A-KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             H-HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            1 3466778899999887652 2 3344555566779999999998884

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.76  E-value=2e-07  Score=92.93  Aligned_cols=200  Identities=15%  Similarity=0.097  Sum_probs=124.0

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-  231 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-  231 (472)
                      ...+|..+|.-. .|..|+|+++.+.  |.++..-+++-.|+|++++|. .--..++.+...|-.|+|+... ++.+.- 
T Consensus        92 nsGiP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ  168 (1255)
T KOG0444|consen   92 NSGIPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR-LEMLPPQ  168 (1255)
T ss_pred             cCCCCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch-hhhcCHH
Confidence            345677777777 8888888887775  555666677777888777665 1112233444555566666543 222110 


Q ss_pred             eeCCCCeeEEEEeeccC---CceeEEEeCCCeeEEEEeee-----eceEeecCCCceeEEEEEEeecccccCchhhHHhh
Q 038350          232 TLRTLGLRKLIVRHCQS---LSLGIELWLPRLQYFEYAGK-----MVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESL  303 (472)
Q Consensus       232 ~~~~~~L~~L~l~~c~~---~~~~~~i~~p~L~~L~l~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l  303 (472)
                      ...+..|++|.+++.+.   ++..+ -+..+|+.|.+++.     ..+-++.++.+|.+++++...-       ..++.-
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-------p~vPec  240 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-------PIVPEC  240 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-------CcchHH
Confidence            01123677777777653   22222 12345666777663     2345677788888887775432       246667


Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      +..+++|..|.|+++.+..+.       .....-.+|..|++    +.+....++.-+-..|.|++|.+..+.
T Consensus       241 ly~l~~LrrLNLS~N~iteL~-------~~~~~W~~lEtLNl----SrNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELN-------MTEGEWENLETLNL----SRNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             HhhhhhhheeccCcCceeeee-------ccHHHHhhhhhhcc----ccchhccchHHHhhhHHHHHHHhccCc
Confidence            778899999999988665432       11223567777777    445666788888888999999887764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.48  E-value=8.9e-07  Score=88.46  Aligned_cols=67  Identities=13%  Similarity=0.265  Sum_probs=40.9

Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP  381 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  381 (472)
                      ++.+.+|+.+....+.++.      .| .+++.|..|+.|.++-    +-...++.-+.-.|.|+.|++..++...+|
T Consensus       312 IGKL~~Levf~aanN~LEl------VP-EglcRC~kL~kL~L~~----NrLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  312 IGKLIQLEVFHAANNKLEL------VP-EGLCRCVKLQKLKLDH----NRLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             hhhhhhhHHHHhhcccccc------Cc-hhhhhhHHHHHhcccc----cceeechhhhhhcCCcceeeccCCcCccCC
Confidence            3444455555555555443      34 6677788888888743    223355566666788888888777654443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=3.5e-05  Score=74.26  Aligned_cols=101  Identities=23%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             ceEEEEEEeeeeecC-CC---CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEE
Q 038350          167 MCIRVLNINSCGLGL-CN---FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKL  241 (472)
Q Consensus       167 ~~L~~L~L~~~~l~~-~~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L  241 (472)
                      ++|+.|+|+.+.+.. .+   -..+++|++|.|..|.++..++..++..||.|+.|.+.+...+..-.. ......|++|
T Consensus       172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L  251 (505)
T KOG3207|consen  172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL  251 (505)
T ss_pred             ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence            388888888887652 11   257899999999999999999999999999999999998753221111 0112388889


Q ss_pred             EEeeccC---CceeEEEeCCCeeEEEEee
Q 038350          242 IVRHCQS---LSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       242 ~l~~c~~---~~~~~~i~~p~L~~L~l~~  267 (472)
                      ++++..+   ......-..|.|+.|.++.
T Consensus       252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             cccCCcccccccccccccccchhhhhccc
Confidence            9988764   2223445677777777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.38  E-value=0.00041  Score=74.13  Aligned_cols=143  Identities=20%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             cccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR  234 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~  234 (472)
                      ...+|..+.  . +|+.|.+.++.+..-. ...++|++|+|+++.++  .+..   ..+.|+.|++.++. +..+.  ..
T Consensus       213 LtsLP~~l~--~-~L~~L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~Lt--sLP~---lp~sL~~L~Ls~N~-L~~Lp--~l  280 (788)
T PRK15387        213 LTTLPDCLP--A-HITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNP-LTHLP--AL  280 (788)
T ss_pred             CCcCCcchh--c-CCCEEEccCCcCCCCC-CCCCCCcEEEecCCccC--cccC---cccccceeeccCCc-hhhhh--hc
Confidence            345776553  3 7888999888776311 23588999999988776  2222   24788999888764 33322  11


Q ss_pred             CCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecC-CCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350          235 TLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRG-MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL  313 (472)
Q Consensus       235 ~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L  313 (472)
                      .++|+.|.++++..  ..+....|+|+.|++++.... .+.. .++|..+.+..+.          +..+.....+|+.|
T Consensus       281 p~~L~~L~Ls~N~L--t~LP~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~----------L~~LP~lp~~Lq~L  347 (788)
T PRK15387        281 PSGLCKLWIFGNQL--TSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQ----------LTSLPTLPSGLQEL  347 (788)
T ss_pred             hhhcCEEECcCCcc--ccccccccccceeECCCCccc-cCCCCcccccccccccCc----------cccccccccccceE
Confidence            23788888888753  333334578888888764211 1111 1235544443211          11111122478888


Q ss_pred             EEecccccc
Q 038350          314 QVSTSALKI  322 (472)
Q Consensus       314 ~l~~~~~~~  322 (472)
                      +++++.+..
T Consensus       348 dLS~N~Ls~  356 (788)
T PRK15387        348 SVSDNQLAS  356 (788)
T ss_pred             ecCCCccCC
Confidence            888776553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.21  E-value=0.0008  Score=71.93  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=21.8

Q ss_pred             eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeC
Q 038350          168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLS  201 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~  201 (472)
                      +|++|+|+++.+..-+ ...++|++|+|.++.+.
T Consensus       243 ~Lk~LdLs~N~LtsLP-~lp~sL~~L~Ls~N~L~  275 (788)
T PRK15387        243 ELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLT  275 (788)
T ss_pred             CCcEEEecCCccCccc-CcccccceeeccCCchh
Confidence            8999999988775211 12356777777666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.18  E-value=2.3e-05  Score=80.58  Aligned_cols=86  Identities=27%  Similarity=0.369  Sum_probs=60.4

Q ss_pred             ccccCCceEEEEEEeee-eec---C----CCCCCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeE--
Q 038350          161 FFYEQGMCIRVLNINSC-GLG---L----CNFVNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKV--  229 (472)
Q Consensus       161 ~~~~~~~~L~~L~L~~~-~l~---~----~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l--  229 (472)
                      ....|+ .|+.|+++++ ...   +    .....+++|+.|++.++. ++|.++..+...||+||.|.+.+|..++..  
T Consensus       209 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  209 LALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             HHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            344566 8888888873 211   1    112567888888888876 778888888888999999888888764432  


Q ss_pred             -EEeeCCCCeeEEEEeecc
Q 038350          230 -EITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       230 -~i~~~~~~L~~L~l~~c~  247 (472)
                       .+...+++|++|++..|.
T Consensus       288 ~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHHHhcCcccEEeeecCc
Confidence             334445678888888876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.18  E-value=0.00022  Score=62.15  Aligned_cols=66  Identities=12%  Similarity=0.079  Sum_probs=25.1

Q ss_pred             cCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          306 PFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       306 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+++|++|.++.+.+..+..    - ..+..+++|+.|++..+--.....-=..++..+|+|+.|+-....
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~----l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNE----L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             H-TT--EEE-TTS---SCCC----C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             hCCcCCEEECcCCcCCChHH----h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            34555555555554433221    0 123345555555554321111111334467889999999766553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.18  E-value=0.0001  Score=69.24  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=47.1

Q ss_pred             CCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEeee-
Q 038350          338 WQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFT-  415 (472)
Q Consensus       338 ~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~-  415 (472)
                      +.|+.+.+..+- .......+..-+.+||+|+.|+|+.+.-....           +.+--...+.+++|+++.+..+. 
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-----------s~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-----------SVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-----------HHHHHHHhcccchheeeccccccc
Confidence            445555544321 11223355555666777777776665311000           00000011133566666665542 


Q ss_pred             cChhhHHHHHHHHhcCccceEEEEeecccc
Q 038350          416 GKICEIDLVKFLLRNSRSIKELNIKQLIRA  445 (472)
Q Consensus       416 g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~  445 (472)
                      -+.+-..+++.+-+.++.|+.+.+.+....
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            234555666666666677776666555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.00029  Score=64.90  Aligned_cols=239  Identities=18%  Similarity=0.188  Sum_probs=133.4

Q ss_pred             eEEEEEEeeeeecCCC----C-CCcccccEEEeeeEEeC-hHHHHHHHhcCCCcceEeecccCCcee-EE-EeeCCCCee
Q 038350          168 CIRVLNINSCGLGLCN----F-VNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECYRIFK-VE-ITLRTLGLR  239 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~----~-~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~~~-l~-i~~~~~~L~  239 (472)
                      -++-|.+.+|.++..+    + ..+..++.|+|.++.+. ...+.+++.+.|.|+.|+|+ |..+.. +. .+.+..+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceE
Confidence            4556667777776433    2 56788999999999998 58899999999999999998 443432 22 234556999


Q ss_pred             EEEEeeccC---CceeEEEeCCCeeEEEEeeeec-eEe-----ecC-CCceeEEEEEEeecccccCchhhHHhhcccCCC
Q 038350          240 KLIVRHCQS---LSLGIELWLPRLQYFEYAGKMV-PFD-----MRG-MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSD  309 (472)
Q Consensus       240 ~L~l~~c~~---~~~~~~i~~p~L~~L~l~~~~~-~~~-----~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~  309 (472)
                      .|.+.+...   ...+..-..|.++.|.++.... .+-     ... -+.+..+...-|....    -....++..-+|+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WLNKNKLSRIFPN  200 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HHHHHhHHhhccc
Confidence            999887653   2334444566666665544211 000     000 0112222111111000    0134566778899


Q ss_pred             CcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCC
Q 038350          310 ARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFP  389 (472)
Q Consensus       310 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~  389 (472)
                      +..+.++.+.++.... .    .+..+++.+--|.+..+ +..+++++- -|...|.|..|.+..++...-     -.|+
T Consensus       201 v~sv~v~e~PlK~~s~-e----k~se~~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~-----l~~~  268 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESS-E----KGSEPFPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVSENPLSDP-----LRGG  268 (418)
T ss_pred             chheeeecCcccchhh-c----ccCCCCCcchhhhhccc-ccccHHHHH-HHcCCchhheeeccCCccccc-----ccCC
Confidence            9999999887775442 1    12223333344444322 112233333 367899999999988752200     0010


Q ss_pred             CCccccccccc--ccccCccEEEEEee---ecChhhHHHHHHHHh
Q 038350          390 LSRGEIWTTNG--SILDHLECVQFEGF---TGKICEIDLVKFLLR  429 (472)
Q Consensus       390 ~~~~~~w~~~~--~~~~~L~~v~i~~f---~g~~~e~~~~~~ll~  429 (472)
                          +  ....  .++++++++.=...   .-.+.|..|++|.+.
T Consensus       269 ----e--rr~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  269 ----E--RRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             ----c--ceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence                0  0111  14455554432212   234577889998876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.05  E-value=0.00016  Score=76.61  Aligned_cols=79  Identities=18%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             ceEEEEEEeeeeecCCC-----CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEE
Q 038350          167 MCIRVLNINSCGLGLCN-----FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL  241 (472)
Q Consensus       167 ~~L~~L~L~~~~l~~~~-----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L  241 (472)
                      .+|++|+++|...-..+     ..-||+|++|.+.+..+..+++..+..++|+|..|+++++. +.++..-+.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence            37999999886332222     25699999999999999878899999999999999999864 4444333334455555


Q ss_pred             EEeec
Q 038350          242 IVRHC  246 (472)
Q Consensus       242 ~l~~c  246 (472)
                      .+.+-
T Consensus       201 ~mrnL  205 (699)
T KOG3665|consen  201 SMRNL  205 (699)
T ss_pred             hccCC
Confidence            55443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.01  E-value=0.00064  Score=72.86  Aligned_cols=103  Identities=14%  Similarity=0.061  Sum_probs=57.9

Q ss_pred             cccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR  234 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~  234 (472)
                      ...+|..+  .. +|+.|+|+++.+..-...-+++|++|+|.++.++  .+..-+  .+.|+.|+|.+|. +..+.... 
T Consensus       190 LtsLP~~I--p~-~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~Ls~N~-L~~LP~~l-  260 (754)
T PRK15370        190 LTTIPACI--PE-QITTLILDNNELKSLPENLQGNIKTLYANSNQLT--SIPATL--PDTIQEMELSINR-ITELPERL-  260 (754)
T ss_pred             cCcCCccc--cc-CCcEEEecCCCCCcCChhhccCCCEEECCCCccc--cCChhh--hccccEEECcCCc-cCcCChhH-
Confidence            33456543  23 7888888888766211122358888888888766  222111  2478888888775 22221111 


Q ss_pred             CCCeeEEEEeeccCCceeEEEe-CCCeeEEEEeee
Q 038350          235 TLGLRKLIVRHCQSLSLGIELW-LPRLQYFEYAGK  268 (472)
Q Consensus       235 ~~~L~~L~l~~c~~~~~~~~i~-~p~L~~L~l~~~  268 (472)
                      ..+|+.|.++++..  ..+.-. .++|+.|.+++.
T Consensus       261 ~s~L~~L~Ls~N~L--~~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        261 PSALQSLDLFHNKI--SCLPENLPEELRYLSVYDN  293 (754)
T ss_pred             hCCCCEEECcCCcc--CccccccCCCCcEEECCCC
Confidence            13678888776642  222211 246777777664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.00  E-value=0.00018  Score=66.26  Aligned_cols=243  Identities=15%  Similarity=0.153  Sum_probs=139.4

Q ss_pred             CCcccCCcccccCCceEEEEEEeeee-------ecC----CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeec
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCG-------LGL----CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLV  221 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~-------l~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~  221 (472)
                      .+.+.+-..+--|. .|++|.+++..       +.+    -.+.-|++|+++.++.|.-.  .+..+...=|.|+++.++
T Consensus       169 ~~k~d~~hildf~~-~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~  245 (490)
T KOG1259|consen  169 GGKYDFSHVLDFCT-QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVH  245 (490)
T ss_pred             CCccchHHHHHhhh-heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh--heeceeecCchhheeeee
Confidence            44555555443355 79999998642       111    22356889999988877543  555666678999999988


Q ss_pred             ccCCcee-E--E---E-----e------e-------CCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec--eEee
Q 038350          222 ECYRIFK-V--E---I-----T------L-------RTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV--PFDM  274 (472)
Q Consensus       222 ~c~~~~~-l--~---i-----~------~-------~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~--~~~~  274 (472)
                      +...-.. .  .   +     .      +       .-..|.++++++... ....-.--+|+++.|.++....  .-.+
T Consensus       246 ~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL  325 (490)
T KOG1259|consen  246 NTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL  325 (490)
T ss_pred             cccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh
Confidence            6521100 0  0   0     0      0       012455555555431 1111223477888888765322  1135


Q ss_pred             cCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhH
Q 038350          275 RGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFEL  354 (472)
Q Consensus       275 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  354 (472)
                      ..+++|+.+++++..-.       .+..+-..+.|+++|.+.++.++.+        .++.++.+|..|++..+. ....
T Consensus       326 a~L~~L~~LDLS~N~Ls-------~~~Gwh~KLGNIKtL~La~N~iE~L--------SGL~KLYSLvnLDl~~N~-Ie~l  389 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLA-------ECVGWHLKLGNIKTLKLAQNKIETL--------SGLRKLYSLVNLDLSSNQ-IEEL  389 (490)
T ss_pred             hhcccceEeecccchhH-------hhhhhHhhhcCEeeeehhhhhHhhh--------hhhHhhhhheeccccccc-hhhH
Confidence            66788888887754321       2334445677889999988877654        345567778888875431 1112


Q ss_pred             HHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccc-cccCccEEEEEeeecChhhHHHHHHH
Q 038350          355 AAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGS-ILDHLECVQFEGFTGKICEIDLVKFL  427 (472)
Q Consensus       355 ~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~L~~v~i~~f~g~~~e~~~~~~l  427 (472)
                       .-..-+++.|.||.|.+..++....+||.            ..... .-.+=-++.+.|-.++..|++-+..+
T Consensus       390 -deV~~IG~LPCLE~l~L~~NPl~~~vdYR------------TKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl  450 (490)
T KOG1259|consen  390 -DEVNHIGNLPCLETLRLTGNPLAGSVDYR------------TKVLARFGERASEISLDNEPGNQQELDTVLVL  450 (490)
T ss_pred             -HHhcccccccHHHHHhhcCCCccccchHH------------HHHHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence             22234678999999999888655444321            11111 11233455566667777777766644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.91  E-value=0.00057  Score=73.21  Aligned_cols=84  Identities=21%  Similarity=0.142  Sum_probs=42.9

Q ss_pred             cccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR  234 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~  234 (472)
                      ...+|..++  . +|++|++++|.+..-...-.++|+.|+|+++.+.  .+..-+  .+.|+.|++.++ .+..+.-. .
T Consensus       211 LtsLP~~l~--~-nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~--~LP~~l--~s~L~~L~Ls~N-~L~~LP~~-l  281 (754)
T PRK15370        211 LKSLPENLQ--G-NIKTLYANSNQLTSIPATLPDTIQEMELSINRIT--ELPERL--PSALQSLDLFHN-KISCLPEN-L  281 (754)
T ss_pred             CCcCChhhc--c-CCCEEECCCCccccCChhhhccccEEECcCCccC--cCChhH--hCCCCEEECcCC-ccCccccc-c
Confidence            335665543  3 6778877777665211112246777777777655  111111  246777777643 33332211 1


Q ss_pred             CCCeeEEEEeecc
Q 038350          235 TLGLRKLIVRHCQ  247 (472)
Q Consensus       235 ~~~L~~L~l~~c~  247 (472)
                      .++|+.|.+++|.
T Consensus       282 ~~sL~~L~Ls~N~  294 (754)
T PRK15370        282 PEELRYLSVYDNS  294 (754)
T ss_pred             CCCCcEEECCCCc
Confidence            1366666666664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.89  E-value=0.0003  Score=49.85  Aligned_cols=56  Identities=23%  Similarity=0.248  Sum_probs=38.2

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      +|++|.+++|.+.   +..|.++++|++|+++++.++.- -...+.++|.|+.|++.+|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            6778888877554   34567888888888887766510 11236778888888887763

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.88  E-value=5.2e-05  Score=77.96  Aligned_cols=185  Identities=19%  Similarity=0.226  Sum_probs=111.6

Q ss_pred             ccccCCceEEEEEEeeee-ecCCCC----CCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeE---EE
Q 038350          161 FFYEQGMCIRVLNINSCG-LGLCNF----VNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKV---EI  231 (472)
Q Consensus       161 ~~~~~~~~L~~L~L~~~~-l~~~~~----~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i  231 (472)
                      ....|. .|+.|++.++. +...++    ..|++|++|.+.+|. +++.++..+...||.|++|++.+|..+++-   .+
T Consensus       238 ~~~~~~-~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~  316 (482)
T KOG1947|consen  238 LLSICR-KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL  316 (482)
T ss_pred             hhhhcC-CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence            344566 99999999987 554443    459999999988886 899999999999999999999999886432   11


Q ss_pred             eeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeee-------eceEeecCCCceeEEEEEEeecccccCchhhHHhhc
Q 038350          232 TLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGK-------MVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLF  304 (472)
Q Consensus       232 ~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~-------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll  304 (472)
                      ...+++|+.|.+..+. .       +++++.+.+.+.       ........++.++++.+.++. ..-.    .....+
T Consensus       317 ~~~c~~l~~l~~~~~~-~-------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~----~~~~~l  383 (482)
T KOG1947|consen  317 LKNCPNLRELKLLSLN-G-------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL----GLELSL  383 (482)
T ss_pred             HHhCcchhhhhhhhcC-C-------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc----chHHHh
Confidence            2235577776665554 1       555666655431       123445667777777776554 1111    124556


Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .++++|+ ..+....               ..+.+++.|.+..+.... ...+...-..|.+++.+.+.++.
T Consensus       384 ~gc~~l~-~~l~~~~---------------~~~~~l~~L~l~~~~~~t-~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  384 RGCPNLT-ESLELRL---------------CRSDSLRVLNLSDCRLVT-DKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cCCcccc-hHHHHHh---------------ccCCccceEecccCcccc-ccchHHHhhhhhccccCCccCcc
Confidence            6666662 2221110               112225666665442211 11333332337777777777664

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.67  E-value=0.0025  Score=36.27  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=22.4

Q ss_pred             cccEEEeeeEEeCh-HHHHHHHhcCC
Q 038350          189 QLTSLALTRVRLSW-AAMENIAHNCP  213 (472)
Q Consensus       189 ~L~~L~L~~~~~~~-~~l~~l~~~cp  213 (472)
                      +||+|+|.++.|.+ +.++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            58999999999984 58999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.66  E-value=9.7e-05  Score=77.57  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=50.6

Q ss_pred             hhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350          298 DDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAI  377 (472)
Q Consensus       298 ~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~  377 (472)
                      +.+...+.++.+|+.|+++.+.+..++.      ..+.++..|++|.|+    ++....++.=+..|+.|++|.-..+..
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LS----GNkL~~Lp~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLS----GNKLTTLPDTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccCCH------HHHhchHHhHHHhcc----cchhhhhhHHHHhhhhhHHHhhcCCce
Confidence            3566778888899999998887665543      334566777777774    444556666667778888887776655


Q ss_pred             cCCC
Q 038350          378 MHTP  381 (472)
Q Consensus       378 ~~~~  381 (472)
                      ..+|
T Consensus       443 ~~fP  446 (1081)
T KOG0618|consen  443 LSFP  446 (1081)
T ss_pred             eech
Confidence            4444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.61  E-value=0.003  Score=55.01  Aligned_cols=112  Identities=21%  Similarity=0.225  Sum_probs=47.0

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHH-HHHhcCCCcceEEEEeCcccCC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAII-CLLISSPNITTLAISTGAIMHT  380 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~-~ll~~~p~L~~L~i~~~~~~~~  380 (472)
                      .+-..+.+++.|+++.+.+..+        .+++.+.+|+.|.++.+    ....+. .+.+++|+|+.|.+..+.....
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l--------~~l~~L~~L~~L~L~~N----~I~~i~~~l~~~lp~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKL--------EGLPGLPRLKTLDLSNN----RISSISEGLDKNLPNLQELYLSNNKISDL  103 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S----------TT----TT--EEE--SS-------S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred             chhhhhcCCCEEECCCCCCccc--------cCccChhhhhhcccCCC----CCCccccchHHhCCcCCEEECcCCcCCCh
Confidence            3334578899999999877643        34566888999998643    233342 3446799999999987743222


Q ss_pred             CCCCCCCCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350          381 PDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK  440 (472)
Q Consensus       381 ~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~  440 (472)
                      .+              ......+++|+.|.+.|=.-+ ..-..=.|++...|+|+.++-.
T Consensus       104 ~~--------------l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  104 NE--------------LEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             CC--------------CGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred             HH--------------hHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence            10              122226688888888762212 2224455777888999976544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.54  E-value=0.00031  Score=67.27  Aligned_cols=227  Identities=17%  Similarity=0.173  Sum_probs=121.8

Q ss_pred             HHHHHHCCCcEEE-EEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEe
Q 038350          124 IEIVLEKSVQELS-LDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRL  200 (472)
Q Consensus       124 l~~~~~~~l~~L~-l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~  200 (472)
                      +.+...+++.++- +++.+           +...+.|..+.--+ +|++|+++++.+.  |..++++ +|+.|.+.++-+
T Consensus       243 lpae~~~~L~~l~vLDLRd-----------Nklke~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRD-----------NKLKEVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hHHHHhcccccceeeeccc-----------cccccCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            4555566665554 55543           56677888775556 8999999998776  6677888 899999988865


Q ss_pred             ChHHHHHHHhcCCCcc---eEee-cccCCceeE-----------EE----eeCCCCeeEEEEeeccC---------C---
Q 038350          201 SWAAMENIAHNCPFLE---TLSL-VECYRIFKV-----------EI----TLRTLGLRKLIVRHCQS---------L---  249 (472)
Q Consensus       201 ~~~~l~~l~~~cp~Le---~L~l-~~c~~~~~l-----------~i----~~~~~~L~~L~l~~c~~---------~---  249 (472)
                      .  .+..-+-+|+.=+   +|+= .-|.++..-           ..    .....+.|.|.++.-..         .   
T Consensus       310 r--TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~  387 (565)
T KOG0472|consen  310 R--TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKS  387 (565)
T ss_pred             H--HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhh
Confidence            4  4444444454422   2211 012121100           00    00022555565554321         0   


Q ss_pred             --ceeEEEeCCCeeEEE--------------Eee---eeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCC
Q 038350          250 --SLGIELWLPRLQYFE--------------YAG---KMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDA  310 (472)
Q Consensus       250 --~~~~~i~~p~L~~L~--------------l~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L  310 (472)
                        ...+..+--+|.++=              ++.   .+.+..+..+++|+-++++...-.       .++.-+.++..|
T Consensus       388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-------~LP~e~~~lv~L  460 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-------DLPEEMGSLVRL  460 (565)
T ss_pred             cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-------hcchhhhhhhhh
Confidence              011111111111110              011   111223445666766666533211       233445566667


Q ss_pred             cEEEEecccccccccc-----------------cccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEE
Q 038350          311 RILQVSTSALKIFPTE-----------------CLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAIS  373 (472)
Q Consensus       311 ~~L~l~~~~~~~~~~~-----------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~  373 (472)
                      ++|+++.+.++.++..                 +..+..++..+.+|+.|++    ..++...++.++++|.+|++|.|+
T Consensus       461 q~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL----~nNdlq~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  461 QTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL----QNNDLQQIPPILGNMTNLRHLELD  536 (565)
T ss_pred             heecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc----CCCchhhCChhhccccceeEEEec
Confidence            8888876654433220                 1111122445666777776    456788999999999999999999


Q ss_pred             eCc
Q 038350          374 TGA  376 (472)
Q Consensus       374 ~~~  376 (472)
                      +.+
T Consensus       537 gNp  539 (565)
T KOG0472|consen  537 GNP  539 (565)
T ss_pred             CCc
Confidence            985

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.47  E-value=0.0017  Score=69.02  Aligned_cols=119  Identities=16%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             hHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEe-cccCchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350          299 DIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLN-TGLERFELAAIICLLISSPNITTLAISTGAI  377 (472)
Q Consensus       299 ~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~-~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~  377 (472)
                      .+..+..++|+|..|+|++..+..++        +...+.||+.|.+. ..+..  ...+..+ -+..+|+.|+|+....
T Consensus       164 dF~~lc~sFpNL~sLDIS~TnI~nl~--------GIS~LknLq~L~mrnLe~e~--~~~l~~L-F~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  164 DFSQLCASFPNLRSLDISGTNISNLS--------GISRLKNLQVLSMRNLEFES--YQDLIDL-FNLKKLRVLDISRDKN  232 (699)
T ss_pred             hHHHHhhccCccceeecCCCCccCcH--------HHhccccHHHHhccCCCCCc--hhhHHHH-hcccCCCeeecccccc
Confidence            46778888888888888887665432        23445666666654 22222  2233333 2378888888887742


Q ss_pred             cCCCCCCCCCCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350          378 MHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK  440 (472)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~  440 (472)
                      ...+    .    -...|-+... .+++|+.+   .+.|++-.-+++..++..=++|+++...
T Consensus       233 ~~~~----~----ii~qYlec~~-~LpeLrfL---DcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  233 NDDT----K----IIEQYLECGM-VLPELRFL---DCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ccch----H----HHHHHHHhcc-cCccccEE---ecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            1110    0    0001111111 34444444   4446666667777788777777777643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.13  E-value=6.5e-05  Score=63.49  Aligned_cols=82  Identities=15%  Similarity=0.060  Sum_probs=50.5

Q ss_pred             cccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350          162 FYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR  239 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~  239 (472)
                      +|... .++.|.|+++.+.  |+..+.+.+|+.|++.++++.  .+..-+++.|.|+.|++....-...-+-.+..|.|+
T Consensus        29 Lf~~s-~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMS-NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             ccchh-hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            44444 7777888877665  677788888888888887775  455557778888888776432111111123344555


Q ss_pred             EEEEeec
Q 038350          240 KLIVRHC  246 (472)
Q Consensus       240 ~L~l~~c  246 (472)
                      .|++...
T Consensus       106 vldltyn  112 (264)
T KOG0617|consen  106 VLDLTYN  112 (264)
T ss_pred             hhhcccc
Confidence            5555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.13  E-value=0.0035  Score=44.24  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=37.2

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEe
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRL  200 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~  200 (472)
                      +....+|...|...++|++|+++++.+.   +..|.++++|++|+++++.+
T Consensus        11 n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   11 NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4455677766654449999999998665   56789999999999987653

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.05  E-value=0.0005  Score=72.45  Aligned_cols=48  Identities=17%  Similarity=0.155  Sum_probs=32.9

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS  201 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~  201 (472)
                      +.....|.....-. +|++|.|.++.+.  |.++..+.+|..|+++.+.|.
T Consensus        78 n~i~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~  127 (1081)
T KOG0618|consen   78 NYIRSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG  127 (1081)
T ss_pred             hhHhhCchhhhhhh-cchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence            34455665544445 7888888877554  556778888888888877665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.64  E-value=0.00015  Score=61.38  Aligned_cols=162  Identities=19%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEEeeccCCceeEEEeCCCe
Q 038350          182 CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIVRHCQSLSLGIELWLPRL  260 (472)
Q Consensus       182 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l~~c~~~~~~~~i~~p~L  260 (472)
                      +++.++.+.+.|.|+++.++  .+..-++...+||.|++.+.. ++.+.. -+.+++|+.|.++-...            
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl------------   91 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL------------   91 (264)
T ss_pred             ccccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh------------
Confidence            45577788899999888665  122224445688888887643 333322 12345666665443321            


Q ss_pred             eEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCc
Q 038350          261 QYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQL  340 (472)
Q Consensus       261 ~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  340 (472)
                             ...+--++..|.|+.+++.+..-...     .++.-+-.+..|.-|.++.+.++.+      | ....++.+|
T Consensus        92 -------~~lprgfgs~p~levldltynnl~e~-----~lpgnff~m~tlralyl~dndfe~l------p-~dvg~lt~l  152 (264)
T KOG0617|consen   92 -------NILPRGFGSFPALEVLDLTYNNLNEN-----SLPGNFFYMTTLRALYLGDNDFEIL------P-PDVGKLTNL  152 (264)
T ss_pred             -------hcCccccCCCchhhhhhccccccccc-----cCCcchhHHHHHHHHHhcCCCcccC------C-hhhhhhcce
Confidence                   01122355666666666665432211     1111222334455566776665543      3 334556677


Q ss_pred             eeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350          341 EHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP  381 (472)
Q Consensus       341 ~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  381 (472)
                      +.|.+.    .++...++.-++....|+.|+|++..-...|
T Consensus       153 qil~lr----dndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  153 QILSLR----DNDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             eEEeec----cCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            777763    3456677777888899999999998644333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.16  E-value=0.0038  Score=59.90  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHH-HHhcCCCcceEEEEeCccc
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIIC-LLISSPNITTLAISTGAIM  378 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~-ll~~~p~L~~L~i~~~~~~  378 (472)
                      .-+..+++|+.|.++++.+..+.     + ..+....+++.|.+..    +....+.. +++...+|+.|++.++...
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~-----~-~aFe~~a~l~eL~L~~----N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIE-----D-GAFEGAAELQELYLTR----NKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             HHHhhcccceEeccCCCccchhh-----h-hhhcchhhhhhhhcCc----chHHHHHHHhhhccccceeeeecCCeeE
Confidence            44788999999999988765432     2 3444556677777743    33444443 6899999999999888643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.08  E-value=0.013  Score=38.23  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ++|++|+|.++.++  .+...++.||+|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCC
Confidence            35677777777666  344446677777777777764

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.07  E-value=0.003  Score=60.58  Aligned_cols=49  Identities=18%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeee-EEeC
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTR-VRLS  201 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~-~~~~  201 (472)
                      +....+|...|+.-.+|++|+|+++.+.   |.+|.++++|.+|.+.+ +.|+
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            6677888888877668999999988664   67788999988888766 6665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.70  E-value=0.0026  Score=65.61  Aligned_cols=199  Identities=17%  Similarity=0.149  Sum_probs=93.7

Q ss_pred             cCCCccEEEEEEEeCCCcchHhHHHHHHH-HHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEee
Q 038350           98 ASEFLTKFSFRLYYSSNIYRQNIDKWIEI-VLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINS  176 (472)
Q Consensus        98 ~~~~l~~l~l~~~~~~~~~~~~i~~wl~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~  176 (472)
                      .|+++..|+...+....  ...+...-.. -+-..++.+.+.-. +         +..++. |..+|.+. +|++|.|.+
T Consensus        53 ~g~~~~~f~a~~s~~ad--s~vl~qLq~i~d~lqkt~~lkl~~~-p---------a~~pt~-pi~ifpF~-sLr~LElrg  118 (1096)
T KOG1859|consen   53 SGAPVDYFRAYVSDNAD--SRVLEQLQRILDFLQKTKVLKLLPS-P---------ARDPTE-PISIFPFR-SLRVLELRG  118 (1096)
T ss_pred             CCCCCceeEEecCCccc--chHHHHHHHHHHHHhhheeeeeccc-C---------CCCCCC-Cceecccc-ceeeEEecC
Confidence            46789999988775432  2222222111 11234444554211 1         133343 88889999 999999999


Q ss_pred             eeecC-CCCCCc---------------------------------ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecc
Q 038350          177 CGLGL-CNFVNF---------------------------------IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVE  222 (472)
Q Consensus       177 ~~l~~-~~~~~~---------------------------------~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~  222 (472)
                      |.+.. .++..+                                 ..|.+.+++++.++  .+..-+.-.|.||.|+|+.
T Consensus       119 ~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLsh  196 (1096)
T KOG1859|consen  119 CDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSH  196 (1096)
T ss_pred             cchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccch
Confidence            86652 222111                                 12222233222222  1111112235566666664


Q ss_pred             cCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhh
Q 038350          223 CYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDD  299 (472)
Q Consensus       223 c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~  299 (472)
                      ..- ..+.---.++.|++|+++.... ....+...+-+|+.|.+.+... . .-+.++.+|..+++++.....+     .
T Consensus       197 Nk~-~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~h-----s  270 (1096)
T KOG1859|consen  197 NKF-TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEH-----S  270 (1096)
T ss_pred             hhh-hhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcc-----h
Confidence            321 1111101234777777765442 2233333333467777666432 1 1345556666666554322211     1


Q ss_pred             HHhhcccCCCCcEEEEecc
Q 038350          300 IESLFNPFSDARILQVSTS  318 (472)
Q Consensus       300 ~~~ll~~l~~L~~L~l~~~  318 (472)
                      -..++..+..|..|.|.++
T Consensus       271 eL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  271 ELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hhhHHHHHHHHHHHhhcCC
Confidence            2234445555556666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.35  E-value=3e-05  Score=73.99  Aligned_cols=67  Identities=21%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecc
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVE  222 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~  222 (472)
                      +.-..+|..+..-. .++.|+.+++.+.  |....+.++|++|+++++.+.  .+..-+..|-.|++|+...
T Consensus        78 n~l~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   78 NKLSQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             chhhhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhccc
Confidence            34455666555544 5566666655443  444456666666666655544  1111133445555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.15  E-value=0.012  Score=38.39  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             eEEEEEEeeeeecC--CCCCCcccccEEEeeeEEeC
Q 038350          168 CIRVLNINSCGLGL--CNFVNFIQLTSLALTRVRLS  201 (472)
Q Consensus       168 ~L~~L~L~~~~l~~--~~~~~~~~L~~L~L~~~~~~  201 (472)
                      +|++|+++++.+..  +.+.+|++|++|+++++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            68899999988763  34889999999999998876

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.13  E-value=0.1  Score=45.85  Aligned_cols=52  Identities=23%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             EEEEEEeeeeec-CCCCCCcccccEEEeeeEEeC--hHHHHHHHhcCCCcceEeeccc
Q 038350          169 IRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLS--WAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       169 L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      ...++|+.+.+. ...|..++.|.+|.|.+++|+  +..+..   ..|+|..|.+.+.
T Consensus        44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNN   98 (233)
T ss_pred             cceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCc
Confidence            334444444332 234455556666666655555  333322   2355555555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.12  E-value=0.012  Score=55.07  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             CCCCCCCc----hHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            5 TDPLSDFH----DDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         5 ~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      .|.|+.||    |+|-..|||+|+..+++.+..|||+|+
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~  110 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWK  110 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence            58899999    999999999999999999999999998

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.10  E-value=0.007  Score=66.15  Aligned_cols=102  Identities=20%  Similarity=0.094  Sum_probs=52.6

Q ss_pred             cCCceEEEEEEeeee--ec--CCC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEe-eCCCC
Q 038350          164 EQGMCIRVLNINSCG--LG--LCN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEIT-LRTLG  237 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~--l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~-~~~~~  237 (472)
                      .|+ .|+.|-+..+.  +.  +.+ |..+|.|+.|+|+++. ....+...++..-+|+.|++.++. +..+... ..+..
T Consensus       543 ~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  543 ENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK  619 (889)
T ss_pred             CCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence            344 57777666653  22  222 5677888888887642 112344445566677777777643 2222110 11225


Q ss_pred             eeEEEEeeccC--CceeEEEeCCCeeEEEEeee
Q 038350          238 LRKLIVRHCQS--LSLGIELWLPRLQYFEYAGK  268 (472)
Q Consensus       238 L~~L~l~~c~~--~~~~~~i~~p~L~~L~l~~~  268 (472)
                      |.+|++.....  ....+....++|++|.+.+.
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeecc
Confidence            55566555441  11222233567777776553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=0.0091  Score=52.24  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=58.7

Q ss_pred             cccCCcccccCCceEEEEEEeeeeecC---CCCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLGL---CNFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKVE  230 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~  230 (472)
                      -+.+|-.....- .++.++=+++.+--   ..+.+++.++.|.+.+| ++.|..++.+-...|+||+|+|++|+.++.--
T Consensus        90 ~~~lp~~~~~~~-~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen   90 YFSLPGPNADNV-KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             eecCCCCCCCcc-eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence            345554333333 56666666654432   23467788888888888 66788888877778999999999998776532


Q ss_pred             Eee--CCCCeeEEEEeecc
Q 038350          231 ITL--RTLGLRKLIVRHCQ  247 (472)
Q Consensus       231 i~~--~~~~L~~L~l~~c~  247 (472)
                      +.+  .+++|+.|.+.+-.
T Consensus       169 L~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  169 LACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHHHHhhhhHHHHhcCch
Confidence            211  23466666655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.71  E-value=0.016  Score=52.79  Aligned_cols=80  Identities=21%  Similarity=0.269  Sum_probs=56.9

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeC-hHHHHHHHhcCCCcceEeecccCC--ceeEEEeeCCCCeeEEEE
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECYR--IFKVEITLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~--~~~l~i~~~~~~L~~L~l  243 (472)
                      .|+.|++.++.+.+ ..+-.+|+|++|.++.+.+. ..++..++..||+|..|++++...  +..+.-...+++|+.|.+
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            67777777887765 55677889999999988544 357788888999999999998642  111211122457777777


Q ss_pred             eecc
Q 038350          244 RHCQ  247 (472)
Q Consensus       244 ~~c~  247 (472)
                      .+|.
T Consensus       124 ~n~~  127 (260)
T KOG2739|consen  124 FNCS  127 (260)
T ss_pred             ccCC
Confidence            7776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.23  E-value=0.054  Score=50.34  Aligned_cols=64  Identities=19%  Similarity=0.166  Sum_probs=44.1

Q ss_pred             HHHHHHhcCCCcceEeecccCCc-eeEEE-----e---eCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEee
Q 038350          204 AMENIAHNCPFLETLSLVECYRI-FKVEI-----T---LRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       204 ~l~~l~~~cp~Le~L~l~~c~~~-~~l~i-----~---~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~  267 (472)
                      ++.+++..|-.|..|.+.+..+- +.-.|     +   +...+|+.+.++.|.. .+..++..-|.|+++....
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~  246 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHN  246 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeec
Confidence            67888888889999988876432 11111     0   1134888899999874 4667778888888888754

>PLN03150 hypothetical protein; Provisional

Probab=93.15  E-value=0.058  Score=57.33  Aligned_cols=79  Identities=18%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEE
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l  243 (472)
                      .++.|+|.++.+.   |..+..+++|+.|+|+++.+.+ .+...+..++.|+.|+|.++.-.+.+.- -+.+++|+.|.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4778888887664   4556788999999998887763 3334467889999999988753332221 223457777777


Q ss_pred             eecc
Q 038350          244 RHCQ  247 (472)
Q Consensus       244 ~~c~  247 (472)
                      +++.
T Consensus       498 s~N~  501 (623)
T PLN03150        498 NGNS  501 (623)
T ss_pred             cCCc
Confidence            7765

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.67  E-value=0.062  Score=52.37  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             CCCCchHHHHHHHhcCCh-hhHhhhhhhccccc
Q 038350            8 LSDFHDDLIIVIITFLPF-IDAYRLCMSKKKWY   39 (472)
Q Consensus         8 is~LPd~iL~~Ils~L~~-~d~~r~s~vSkrWr   39 (472)
                      .++||+|+|..|..+|+. -|.+|.+.||+.||
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr   36 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWR   36 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHH
Confidence            688999999999999965 99999999999999

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=0.05  Score=50.60  Aligned_cols=144  Identities=16%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             ceEEEEEEeeeeecCC--CC-CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC----CceeEEEeeCCCCee
Q 038350          167 MCIRVLNINSCGLGLC--NF-VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY----RIFKVEITLRTLGLR  239 (472)
Q Consensus       167 ~~L~~L~L~~~~l~~~--~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~----~~~~l~i~~~~~~L~  239 (472)
                      +.|+.|+|+.+.+.++  .. ....+|++|.|.+..+........++..|.+++|+++...    +++.--+..-.+.++
T Consensus        97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~  176 (418)
T KOG2982|consen   97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVL  176 (418)
T ss_pred             ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhh
Confidence            3899999999888743  22 4667999999988888777888889999999999888641    111111111124788


Q ss_pred             EEEEeeccC----CceeEEEeCCCeeEEEEeeeec-eE----eecCCCc-----eeEEEEEEeecccccCchhhHHhhcc
Q 038350          240 KLIVRHCQS----LSLGIELWLPRLQYFEYAGKMV-PF----DMRGMDD-----LEVVVLDYRLDTRYSYNGDDIESLFN  305 (472)
Q Consensus       240 ~L~l~~c~~----~~~~~~i~~p~L~~L~l~~~~~-~~----~~~~~~~-----L~~l~l~~~~~~~~~~~~~~~~~ll~  305 (472)
                      .|+.-.|..    ....+.--.||+..+.+..+.. ..    .....|.     |....|+          ..+-..-+.
T Consensus       177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id----------swasvD~Ln  246 (418)
T KOG2982|consen  177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID----------SWASVDALN  246 (418)
T ss_pred             hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc----------cHHHHHHHc
Confidence            888888864    2333444578888887754321 11    1122222     3232222          224455677


Q ss_pred             cCCCCcEEEEecccc
Q 038350          306 PFSDARILQVSTSAL  320 (472)
Q Consensus       306 ~l~~L~~L~l~~~~~  320 (472)
                      +++.+..|.+..+.+
T Consensus       247 ~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  247 GFPQLVDLRVSENPL  261 (418)
T ss_pred             CCchhheeeccCCcc
Confidence            888888888876643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.15  E-value=0.055  Score=59.34  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=78.5

Q ss_pred             eEEEEEEeeeeec-CCCCCCcccccEEEeeeEE--eChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEE
Q 038350          168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVR--LSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l  243 (472)
                      ..+...+.++.+. -..-..++.|++|-+.++.  +. ..-...+.+.|.|..|++++|..++.+.- -+.+-+||.|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             heeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            5666666666543 2334567789999887764  22 22233466789999999999877665422 223458888888


Q ss_pred             eeccCCceeEEEeCC---CeeEEEEeeee--c--eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEe
Q 038350          244 RHCQSLSLGIELWLP---RLQYFEYAGKM--V--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVS  316 (472)
Q Consensus       244 ~~c~~~~~~~~i~~p---~L~~L~l~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~  316 (472)
                      +.+.  ...+.....   +|.+|++....  .  +-....+++|+.+.+.......    +.....-+..+.+|+.|++.
T Consensus       603 ~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~----~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  603 SDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN----DKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cCCC--ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc----chhhHHhhhcccchhhheee
Confidence            7775  233332222   35555544311  1  1122336667776665443110    11233334556666666663

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.69  E-value=0.18  Score=49.98  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             eEEEEEEeee-eecC-CCCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSC-GLGL-CNFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~-~l~~-~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~  244 (472)
                      +|++|.+++| .+.. ++ .-.++|++|.+.+| .+.     .+   -+.|+.|.+.. .....+.  .--++|++|.+.
T Consensus        73 sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~-n~~~~L~--~LPssLk~L~I~  140 (426)
T PRK15386         73 ELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEIS-----GL---PESVRSLEIKG-SATDSIK--NVPNGLTSLSIN  140 (426)
T ss_pred             CCcEEEccCCCCcccCCc-hhhhhhhheEccCccccc-----cc---ccccceEEeCC-CCCcccc--cCcchHhheecc
Confidence            6888888776 3321 11 11246788887776 332     11   14577777653 2222221  111377777765


Q ss_pred             eccC-CceeEE-EeCCCeeEEEEeeeeceEeecCCC-ceeEEEEE
Q 038350          245 HCQS-LSLGIE-LWLPRLQYFEYAGKMVPFDMRGMD-DLEVVVLD  286 (472)
Q Consensus       245 ~c~~-~~~~~~-i~~p~L~~L~l~~~~~~~~~~~~~-~L~~l~l~  286 (472)
                      ++.. ....+. .--++|++|.+.++.....-..+| +|+.+.++
T Consensus       141 ~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls  185 (426)
T PRK15386        141 SYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH  185 (426)
T ss_pred             ccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence            4321 000011 112468888886643211112233 46666664

>PLN03150 hypothetical protein; Provisional

Probab=91.58  E-value=0.081  Score=56.26  Aligned_cols=66  Identities=12%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             cCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      .+|..+.... +|++|+|+++.+.   |..+..+++|+.|+|+++.+... +...+.++++|+.|+|.++.
T Consensus       433 ~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        433 FIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             cCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence            4666666667 9999999999775   45578999999999999988732 33447789999999999875

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.56  E-value=0.23  Score=49.14  Aligned_cols=54  Identities=20%  Similarity=0.357  Sum_probs=25.2

Q ss_pred             cccccEEEeeeEEeChHHHHHHHhcCC-CcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350          187 FIQLTSLALTRVRLSWAAMENIAHNCP-FLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       187 ~~~L~~L~L~~~~~~~~~l~~l~~~cp-~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  247 (472)
                      ++++++|++++|.++  .+.    ..| +|+.|.+.+|..+..+.-.- .++|+.|.+.+|.
T Consensus        51 ~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs  105 (426)
T PRK15386         51 ARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCP  105 (426)
T ss_pred             hcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcc
Confidence            455666666555433  111    122 36666666665543332100 1256666666553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.48  E-value=0.38  Score=42.41  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHH--HhcCCCcceEEEEeCcccC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICL--LISSPNITTLAISTGAIMH  379 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l--l~~~p~L~~L~i~~~~~~~  379 (472)
                      ..+..+++|++|.+..+.+-.+.     | .-...+++|+.|.+..+    ....+..+  +..||.|+.|++-+.+..+
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~-----p-~L~~~~p~l~~L~LtnN----si~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRID-----P-DLDTFLPNLKTLILTNN----SIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             ccCCCccccceEEecCCcceeec-----c-chhhhccccceEEecCc----chhhhhhcchhccCCccceeeecCCchhc
Confidence            34667788999999887655332     2 22245678999998543    22233332  5789999999998886433


Q ss_pred             CCCCCCCCCCCCcccccccccc-cccCccEEEEEeeecChhh
Q 038350          380 TPDFRPNYFPLSRGEIWTTNGS-ILDHLECVQFEGFTGKICE  420 (472)
Q Consensus       380 ~~~~~~~~~~~~~~~~w~~~~~-~~~~L~~v~i~~f~g~~~e  420 (472)
                      ...            | ..... .+++|+.+.+.+.+-.+-+
T Consensus       128 k~~------------Y-R~yvl~klp~l~~LDF~kVt~~ER~  156 (233)
T KOG1644|consen  128 KKN------------Y-RLYVLYKLPSLRTLDFQKVTRKERE  156 (233)
T ss_pred             ccC------------c-eeEEEEecCcceEeehhhhhHHHHH
Confidence            321            1 11122 6788888888887655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.41  E-value=0.078  Score=53.05  Aligned_cols=161  Identities=14%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             eEEEEEEeeeeecC--CCCCCc-ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLGL--CNFVNF-IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~~--~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~  244 (472)
                      .++.|.+.++.+..  +....+ ++|+.|++.++.+.  .+..-+..+|+|+.|.+.++.-..-....+..+.|+.|.++
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            68888888876652  223444 38999999888776  33334778999999999987632222221134588888888


Q ss_pred             eccCCceeEEE--eCCC-eeEEEEeee-ec--eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350          245 HCQSLSLGIEL--WLPR-LQYFEYAGK-MV--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS  318 (472)
Q Consensus       245 ~c~~~~~~~~i--~~p~-L~~L~l~~~-~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~  318 (472)
                      +...  ..+..  ..++ |++|.+.+. ..  ...+.....+..+.+.....       ......+..++++++|+++.+
T Consensus       195 ~N~i--~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-------~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         195 GNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-------EDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             CCcc--ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-------eeccchhccccccceeccccc
Confidence            8753  33322  2344 777777654 11  12233344443333211100       011345666777888888777


Q ss_pred             cccccccccccccCCCcccCCceeEEEec
Q 038350          319 ALKIFPTECLLCGRQLFQFWQLEHLTLNT  347 (472)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  347 (472)
                      .+..++        .+....+++.|.++.
T Consensus       266 ~i~~i~--------~~~~~~~l~~L~~s~  286 (394)
T COG4886         266 QISSIS--------SLGSLTNLRELDLSG  286 (394)
T ss_pred             cccccc--------cccccCccCEEeccC
Confidence            554322        144566777777653

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=90.25  E-value=0.099  Score=48.83  Aligned_cols=35  Identities=14%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             CCCCCCCchHHHHHHHhcC-----ChhhHhhhhhhccccc
Q 038350            5 TDPLSDFHDDLIIVIITFL-----PFIDAYRLCMSKKKWY   39 (472)
Q Consensus         5 ~D~is~LPd~iL~~Ils~L-----~~~d~~r~s~vSkrWr   39 (472)
                      .+-|+.||||||..||...     +.++..++|+|||.|+
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~  143 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFY  143 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHH
Confidence            3457899999999999764     5699999999999997

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=89.38  E-value=0.28  Score=45.21  Aligned_cols=177  Identities=13%  Similarity=0.063  Sum_probs=90.0

Q ss_pred             CCCcccccEEEeeeEEeC---hHHHHHHHhcCCCcceEeecccCCceeE---EEeeCCCCeeEEEEeeccCCceeEEEeC
Q 038350          184 FVNFIQLTSLALTRVRLS---WAAMENIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRKLIVRHCQSLSLGIELWL  257 (472)
Q Consensus       184 ~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~~~~~~~i~~  257 (472)
                      +..||.|++.+|+++.|.   .+.+..++++-..|+.|.+.+|. ++.+   +|..   .|-+|       ....-.-+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk---al~~l-------a~nKKaa~k  156 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK---ALFHL-------AYNKKAADK  156 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH---HHHHH-------HHHhhhccC
Confidence            467777788888777665   45677788888888888888763 2322   1110   11111       001112345


Q ss_pred             CCeeEEEEeee------ece--EeecCCCceeEEEEEEeecccccCchhhH--HhhcccCCCCcEEEEeccccccccccc
Q 038350          258 PRLQYFEYAGK------MVP--FDMRGMDDLEVVVLDYRLDTRYSYNGDDI--ESLFNPFSDARILQVSTSALKIFPTEC  327 (472)
Q Consensus       258 p~L~~L~l~~~------~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--~~ll~~l~~L~~L~l~~~~~~~~~~~~  327 (472)
                      |.|+.+.....      ...  ..+..-..|..+.+.+.....   .+-..  .--+.-+.+|+.|+|..+++.....  
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp---egv~~L~~~gl~y~~~LevLDlqDNtft~~gS--  231 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP---EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS--  231 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc---chhHHHHHHHHHHhCcceeeeccccchhhhhH--
Confidence            66666654221      000  011112346666665432211   11111  1224457899999997776432110  


Q ss_pred             ccccCCCcccCCceeEEEecccCc-hhHHHHHHHHh--cCCCcceEEEEeCc
Q 038350          328 LLCGRQLFQFWQLEHLTLNTGLER-FELAAIICLLI--SSPNITTLAISTGA  376 (472)
Q Consensus       328 ~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~ll~--~~p~L~~L~i~~~~  376 (472)
                      ...+..++.-+.|+.|.+.-|+-. .....+..-+.  ..|+|+.|..+-..
T Consensus       232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            011123455566899998876532 22222222222  37888888776653

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.08  E-value=0.26  Score=27.88  Aligned_cols=22  Identities=14%  Similarity=0.250  Sum_probs=11.6

Q ss_pred             cccccEEEeeeE-EeChHHHHHH
Q 038350          187 FIQLTSLALTRV-RLSWAAMENI  208 (472)
Q Consensus       187 ~~~L~~L~L~~~-~~~~~~l~~l  208 (472)
                      |++|+.|+|.+| .++|.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            345555555555 3555555543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.77  E-value=0.22  Score=28.19  Aligned_cols=17  Identities=41%  Similarity=0.769  Sum_probs=14.4

Q ss_pred             CCCcceEeecccCCcee
Q 038350          212 CPFLETLSLVECYRIFK  228 (472)
Q Consensus       212 cp~Le~L~l~~c~~~~~  228 (472)
                      ||.|+.|+|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            78999999999987764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.78  E-value=0.78  Score=40.48  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=68.5

Q ss_pred             ccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCccccc-ccccc-cccCccEEEEEe
Q 038350          336 QFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIW-TTNGS-ILDHLECVQFEG  413 (472)
Q Consensus       336 ~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w-~~~~~-~~~~L~~v~i~~  413 (472)
                      ...+.+.=.|....+.....++. -|+.++.|+.|.+..+.  .+.|             | .+... ...+|+.|.|.|
T Consensus        97 ~~~~~~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck--~~dD-------------~~L~~l~~~~~~L~~L~lsg  160 (221)
T KOG3864|consen   97 NADNVKIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCK--YFDD-------------WCLERLGGLAPSLQDLDLSG  160 (221)
T ss_pred             CCCcceEEEEecCCchHHHHHHH-HHhccchhhhheecccc--chhh-------------HHHHHhcccccchheeeccC
Confidence            34444444444322222233444 46889999999998884  2221             1 11111 567999999997


Q ss_pred             ee-cChhhHHHHHHHHhcCccceEEEEeeccccCcchhhHHHHHHHHhhhccCCeEEee
Q 038350          414 FT-GKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINW  471 (472)
Q Consensus       414 f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~~~~~~~~~l~~~~~as~~~~i~~  471 (472)
                      +. -++..+..+.    +.++|+++.|+........     ..-...++.|-|+|+|.+
T Consensus       161 C~rIT~~GL~~L~----~lknLr~L~l~~l~~v~~~-----e~~~~~Le~aLP~c~I~~  210 (221)
T KOG3864|consen  161 CPRITDGGLACLL----KLKNLRRLHLYDLPYVANL-----ELVQRQLEEALPKCDIVG  210 (221)
T ss_pred             CCeechhHHHHHH----HhhhhHHHHhcCchhhhch-----HHHHHHHHHhCcccceec
Confidence            64 3555554443    6799999999877765332     234556788999999875

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.36  E-value=0.38  Score=26.51  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=14.6

Q ss_pred             cccccEEEeeeEEeChHHHHHH
Q 038350          187 FIQLTSLALTRVRLSWAAMENI  208 (472)
Q Consensus       187 ~~~L~~L~L~~~~~~~~~l~~l  208 (472)
                      +++|++|+|+++.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4678888888888887777664

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.73  E-value=0.11  Score=47.45  Aligned_cols=78  Identities=17%  Similarity=0.174  Sum_probs=38.7

Q ss_pred             CeeEEEEeeccC----CceeEEEeCCCeeEEEEeeeece-Ee----ecCCCceeEEEEEEeecccccCchhhHHhhcccC
Q 038350          237 GLRKLIVRHCQS----LSLGIELWLPRLQYFEYAGKMVP-FD----MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPF  307 (472)
Q Consensus       237 ~L~~L~l~~c~~----~~~~~~i~~p~L~~L~l~~~~~~-~~----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l  307 (472)
                      +|+.|.++....    ++..+...+|+|+++.++|.... ++    +..+.+|..+++..+....-+   ..-.+.+.-+
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~---dyre~vf~ll  142 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD---DYREKVFLLL  142 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc---cHHHHHHHHh
Confidence            445554443311    34555566788888888875332 11    223344445555544332222   1333445555


Q ss_pred             CCCcEEEEec
Q 038350          308 SDARILQVST  317 (472)
Q Consensus       308 ~~L~~L~l~~  317 (472)
                      ++|++|+-+.
T Consensus       143 ~~L~~LD~~d  152 (260)
T KOG2739|consen  143 PSLKYLDGCD  152 (260)
T ss_pred             hhhccccccc
Confidence            6666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 64/443 (14%), Positives = 127/443 (28%), Gaps = 138/443 (31%)

Query: 3   TNTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDS 62
              D LS F D   +         D  +  +SK+              E+     M  D+
Sbjct: 17  QYKDILSVFEDA-FVDNFDCKDVQDMPKSILSKE--------------EIDHI-IMSKDA 60

Query: 63  -----RQYWLSIGRRTQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYR 117
                R +W  + ++ +++            FV+  + R+  +FL          S I  
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQK----------FVEEVL-RINYKFLM---------SPIKT 100

Query: 118 QNIDKWIEIVLEKSVQELSLDFSDGDPV----VPQP-----------TLRNPQYVLPHFF 162
           +       ++    +++    ++D        V +             LR  + VL    
Sbjct: 101 EQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-- 156

Query: 163 YEQGM------------C--IRVLNINSCG-----LGLCNFVNFI--QLTSLALTRVRLS 201
              G+            C   +V            L  CN    +   L  L L ++  +
Sbjct: 157 ---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPN 212

Query: 202 WAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGI--ELWLPR 259
           W +  + + N             RI  ++  LR L   K    +   L L +   +   +
Sbjct: 213 WTSRSDHSSNIK----------LRIHSIQAELRRLLKSK---PYENCL-L-VLLNVQNAK 257

Query: 260 -LQYFEYAGKMV-------PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR 311
               F  + K++         D         + LD       +   D+++SL   + D R
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLLLKYLDCR 314

Query: 312 ILQVSTSALKIFPTECLLCGRQL------FQFWQ--------------LEHLTLNTGLER 351
              +    L   P    +    +      +  W+              L  L      + 
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 352 FELAAIICLLISSPNIT--TLAI 372
           F+  ++      S +I    L++
Sbjct: 375 FDRLSV---FPPSAHIPTILLSL 394

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 19/197 (9%)

Query: 190 LTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK---VEITLRTLGLRKLIVRHC 246
           L  + L R+ ++   +E IA +    + L L  C          I      L++L +R  
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 247 QSLSLG------IELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYR----LDTRYSYN 296
               +              L     +             LE +V        L    +  
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVP 223

Query: 297 GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAA 356
            + + +L         L       ++ P         L    +L  L+         L A
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 357 IICLLISSPNITTLAIS 373
           +  +      +TTL +S
Sbjct: 284 VYSVC---SRLTTLNLS 297

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 42/267 (15%), Positives = 82/267 (30%), Gaps = 48/267 (17%)

Query: 13  DDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLHCRSFELHEASFMMPDSRQYWLSIGRR 72
           D+L++ I + L   +  ++    K+WY            L +      D     L     
Sbjct: 14  DELLLGIFSCLCLPELLKVSGVCKRWYR-----LASDESLWQ----TLDLTGKNLHPDVT 64

Query: 73  TQVMYMKRIGRLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLE--K 130
            +++    I       F+D+ +    S       FR+ +            +  +L    
Sbjct: 65  GRLLSQGVIAFRCPRSFMDQPLAEHFS------PFRVQHMDLSNSVIEVSTLHGILSQCS 118

Query: 131 SVQELSLDFSDGDPVVPQPTLRNPQYVLPH-------FFYEQGMC--------IRVLNIN 175
            +Q LSL+       +     +N    L          F E  +         +  LN++
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSN--LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 176 SCGL----GLCNFVNFI--QLTSLALTRVR--LSWAAMENIAHNCPFLETLSLVECYRIF 227
            C       +   V  +   +T L L+  R  L  + +  +   CP L  L L +   + 
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML- 235

Query: 228 KVEITLRTLG----LRKLIVRHCQSLS 250
                 +       L+ L +  C  + 
Sbjct: 236 -KNDCFQEFFQLNYLQHLSLSRCYDII 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.03
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.01
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.99
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.98
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.74
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.65
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.61
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.6
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.56
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.55
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.5
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.4
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.35
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.33
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.3
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.27
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.01
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.99
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.99
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.99
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.92
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.84
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.83
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.72
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.16
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.15
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.94
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.82
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.7
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	95.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.92
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	91.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	88.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	87.82
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.23

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=6.1e-21  Score=199.88  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCCCCC----CCchHHHHHHHhcC-ChhhHhhhhhhcccccccccccccc
Q 038350            4 NTDPLS----DFHDDLIIVIITFL-PFIDAYRLCMSKKKWYDRSLWLHCR   48 (472)
Q Consensus         4 ~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vSkrWr~~~~w~~~~   48 (472)
                      +.|+++    .|||||+.+||+|| +.+|++++++|||||+  +++...+
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~--~~~~~~~   52 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWF--KIDSETR   52 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHH--HHHHHHC
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHH--Hhhhccc
Confidence            457777    89999999999999 8999999999999999  8754443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=1e-20  Score=198.22  Aligned_cols=405  Identities=11%  Similarity=0.050  Sum_probs=193.2

Q ss_pred             CCCCCCCCchHHHHHHHhcCC-hhhHhhhhhhcccccccccccc-cceeEeecCcccCcccchhhcccccchhhh-----
Q 038350            4 NTDPLSDFHDDLIIVIITFLP-FIDAYRLCMSKKKWYDRSLWLH-CRSFELHEASFMMPDSRQYWLSIGRRTQVM-----   76 (472)
Q Consensus         4 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr~~~~w~~-~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~-----   76 (472)
                      ..|+++.||||||.+||+||| .+|+++++.|||||+  ++... ...+.+.......+..     ...++..+.     
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~--~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~L~~L~L~   74 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWY--EIERWCRRKVFIGNCYAVSPAT-----VIRRFPKVRSVELK   74 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHH--HHHHHHCCEEEESSTTSSCHHH-----HHHHCTTCCEEEEE
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHH--HhhhhhceEEeeccccccCHHH-----HHhhCCCceEEecc
Confidence            358999999999999999999 899999999999999  76211 1122222110000000     000000000     


Q ss_pred             hHhhhh---------hhhHHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCC
Q 038350           77 YMKRIG---------RLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVP  147 (472)
Q Consensus        77 ~~~~~~---------~~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~  147 (472)
                      ......         ...+...+..+..  ..+.++.+.+.....   ....+.....  ..++++.|.+..+..     
T Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~~---~~~~~~~l~~--~~~~L~~L~L~~~~~-----  142 (594)
T 2p1m_B           75 GKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMVV---TDDCLELIAK--SFKNFKVLVLSSCEG-----  142 (594)
T ss_dssp             CSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESCBC---CHHHHHHHHH--HCTTCCEEEEESCEE-----
T ss_pred             CCCchhhcccccccccchhhHHHHHHHH--hCCCCCeEEeeCcEE---cHHHHHHHHH--hCCCCcEEeCCCcCC-----
Confidence            000000         0000111222211  123455555543321   1122111110  135666666542100     


Q ss_pred             CCCCCCCcccCCcccccCCceEEEEEEeeeeecCCC-------CCCcccccEEEeeeEE--eChHHHHHHHhcCCCcceE
Q 038350          148 QPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCN-------FVNFIQLTSLALTRVR--LSWAAMENIAHNCPFLETL  218 (472)
Q Consensus       148 ~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~-------~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L  218 (472)
                           .....++.....|+ +|++|+|++|.+...+       ...+++|++|+|.++.  +++..+..++.+||+|+.|
T Consensus       143 -----~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          143 -----FSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             -----EEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred             -----CCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence                 01111333333566 8888888887665321       2467899999998875  6678898988899999999


Q ss_pred             eecccCC-------------ceeEEEe------------------------------------------eCCCCeeEEEE
Q 038350          219 SLVECYR-------------IFKVEIT------------------------------------------LRTLGLRKLIV  243 (472)
Q Consensus       219 ~l~~c~~-------------~~~l~i~------------------------------------------~~~~~L~~L~l  243 (472)
                      ++.+|..             +..+.+.                                          ..+++|++|.+
T Consensus       217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L  296 (594)
T 2p1m_B          217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL  296 (594)
T ss_dssp             ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEEC
T ss_pred             ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEc
Confidence            9998732             2222210                                          01356777777


Q ss_pred             eeccCCc---eeEEEeCCCeeEEEEeeeece----EeecCCCceeEEEEEEeecc---cccC-chhhHHhhcccCCCCcE
Q 038350          244 RHCQSLS---LGIELWLPRLQYFEYAGKMVP----FDMRGMDDLEVVVLDYRLDT---RYSY-NGDDIESLFNPFSDARI  312 (472)
Q Consensus       244 ~~c~~~~---~~~~i~~p~L~~L~l~~~~~~----~~~~~~~~L~~l~l~~~~~~---~~~~-~~~~~~~ll~~l~~L~~  312 (472)
                      .+|....   ..+.-.+|+|++|.+.+....    .....+++|+++++..+...   .... ....+..+..++++|++
T Consensus       297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~  376 (594)
T 2p1m_B          297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES  376 (594)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             cCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence            7665311   111124677777777664211    11224677777776431100   0000 12345555566777777


Q ss_pred             EEEecccccccccccccccCCC-cccCCceeEEEec-----ccCch---hHHHHHHHHhcCCCcceEEEEeCcccCCC-C
Q 038350          313 LQVSTSALKIFPTECLLCGRQL-FQFWQLEHLTLNT-----GLERF---ELAAIICLLISSPNITTLAISTGAIMHTP-D  382 (472)
Q Consensus       313 L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~-----~~~~~---~~~~l~~ll~~~p~L~~L~i~~~~~~~~~-~  382 (472)
                      |.+..+.+....     . ..+ ..+++|++|++..     +....   ...++..++++||+|+.|++...-..... .
T Consensus       377 L~~~~~~l~~~~-----~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~  450 (594)
T 2p1m_B          377 VLYFCRQMTNAA-----L-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY  450 (594)
T ss_dssp             EEEEESCCCHHH-----H-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             HHHhcCCcCHHH-----H-HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHH
Confidence            766544332110     0 111 2356677777761     11111   03356666667777777776431000000 0


Q ss_pred             ---CCCCC-------CCCCccccccccc-ccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          383 ---FRPNY-------FPLSRGEIWTTNG-SILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       383 ---~~~~~-------~~~~~~~~w~~~~-~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                         .....       +++....  .... ..+++|+++.+.+..-+.   ..+..++.++++|+.+.++.+..
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~L~~L~L~~n~~~~---~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLG--MHHVLSGCDSLRKLEIRDCPFGD---KALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHH--HHHHHHHCTTCCEEEEESCSCCH---HHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHhchhccEeeccCCCCcHHH--HHHHHhcCCCcCEEECcCCCCcH---HHHHHHHHhCCCCCEEeeeCCCC
Confidence               00000       0000000  0000 035788888887754422   22334556778888888877654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=3e-19  Score=173.48  Aligned_cols=271  Identities=15%  Similarity=0.137  Sum_probs=150.7

Q ss_pred             CCCCCCchHHHHHHHhcCChhhHhhhhhhcccccccccccc---cceeEeecCcccCcccchhhcccccchhhhhHhhhh
Q 038350            6 DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLH---CRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIG   82 (472)
Q Consensus         6 D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~~~~w~~---~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (472)
                      ..++.|||||+.+||++|+.+|+++++.|||+|+  .+...   ...+++....+                         
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~--~~~~~~~~~~~l~l~~~~~-------------------------   59 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWY--RLASDESLWQTLDLTGKNL-------------------------   59 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHH--HHHTCSTTSSEEECTTCBC-------------------------
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhcCchhheeeccccccC-------------------------
Confidence            4589999999999999999999999999999999  54311   11122111110                         


Q ss_pred             hhhHHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCccc
Q 038350           83 RLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFF  162 (472)
Q Consensus        83 ~~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~  162 (472)
                                                       .    ...+.....++++.+.+...             .....+..+
T Consensus        60 ---------------------------------~----~~~~~~~~~~~l~~L~l~~n-------------~l~~~~~~~   89 (336)
T 2ast_B           60 ---------------------------------H----PDVTGRLLSQGVIAFRCPRS-------------FMDQPLAEH   89 (336)
T ss_dssp             ---------------------------------C----HHHHHHHHHTTCSEEECTTC-------------EECSCCCSC
T ss_pred             ---------------------------------C----HHHHHhhhhccceEEEcCCc-------------cccccchhh
Confidence                                             0    01122223345555554211             111122224


Q ss_pred             ccCCceEEEEEEeeeeecC----CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee--E-EEeeCC
Q 038350          163 YEQGMCIRVLNINSCGLGL----CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK--V-EITLRT  235 (472)
Q Consensus       163 ~~~~~~L~~L~L~~~~l~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--l-~i~~~~  235 (472)
                      +.+. +|++|+|++|.+..    ..+..+++|++|+|.++.+++..... ++.||+|+.|++.+|..++.  + .+...+
T Consensus        90 ~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           90 FSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             ccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            4555 78888888776642    23467788888888877777555544 55688888888888755443  1 112235


Q ss_pred             CCeeEEEEeec-cCC---ceeEEEeCC-CeeEEEEeeeec-------eEeecCCCceeEEEEEEeecccccCchhhHHhh
Q 038350          236 LGLRKLIVRHC-QSL---SLGIELWLP-RLQYFEYAGKMV-------PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESL  303 (472)
Q Consensus       236 ~~L~~L~l~~c-~~~---~~~~~i~~p-~L~~L~l~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l  303 (472)
                      ++|++|.+.+| ...   ........| +|++|.+++...       +..+..+++|+.+++..+....     ......
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~  242 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----NDCFQE  242 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----GGGGGG
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----HHHHHH
Confidence            67888888777 431   122223466 777777766421       1123456666666665432100     012234


Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcc
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNIT  368 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~  368 (472)
                      +..+++|++|+++++. ..... +  . ..+..+++|+.|++..+....   .+..+.+++|.|+
T Consensus       243 l~~l~~L~~L~l~~~~-~~~~~-~--~-~~l~~~~~L~~L~l~~~i~~~---~~~~l~~~l~~L~  299 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCY-DIIPE-T--L-LELGEIPTLKTLQVFGIVPDG---TLQLLKEALPHLQ  299 (336)
T ss_dssp             GGGCTTCCEEECTTCT-TCCGG-G--G-GGGGGCTTCCEEECTTSSCTT---CHHHHHHHSTTSE
T ss_pred             HhCCCCCCEeeCCCCC-CCCHH-H--H-HHHhcCCCCCEEeccCccCHH---HHHHHHhhCcceE
Confidence            4566777777776653 11100 0  0 123456777777776552222   3334444555555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.31  E-value=8e-13  Score=127.63  Aligned_cols=202  Identities=14%  Similarity=0.137  Sum_probs=126.0

Q ss_pred             HHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350          124 IEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS  201 (472)
Q Consensus       124 l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~  201 (472)
                      +..+...+++.|.+..             +....+|..++.+. +|++|+|+++.+.  |..+..+++|++|+|+++.+.
T Consensus        75 l~~~~~~~l~~L~L~~-------------n~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~  140 (328)
T 4fcg_A           75 LEDATQPGRVALELRS-------------VPLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR  140 (328)
T ss_dssp             HHHHTSTTCCEEEEES-------------SCCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC
T ss_pred             HhcccccceeEEEccC-------------CCchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccc
Confidence            3344447888888863             23347888888888 9999999999776  455789999999999999887


Q ss_pred             hHHHHHHHhcCCCcceEeecccCCceeEEEe----------eCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeece
Q 038350          202 WAAMENIAHNCPFLETLSLVECYRIFKVEIT----------LRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVP  271 (472)
Q Consensus       202 ~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~----------~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~  271 (472)
                        .+..-+..+++|+.|++.+|...+.+...          ..+++|+.|.+++|..  ..+                 +
T Consensus       141 --~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~~l-----------------p  199 (328)
T 4fcg_A          141 --ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSL-----------------P  199 (328)
T ss_dssp             --CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC--CCC-----------------C
T ss_pred             --cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc--Ccc-----------------h
Confidence              34445788999999999998765543210          1134555555555542  110                 1


Q ss_pred             EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc
Q 038350          272 FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER  351 (472)
Q Consensus       272 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  351 (472)
                      -.+.++++|+.+++..+....       +...+..+++|++|+++++.+.     +..| ..+..+.+|+.|.+..+...
T Consensus       200 ~~l~~l~~L~~L~L~~N~l~~-------l~~~l~~l~~L~~L~Ls~n~~~-----~~~p-~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          200 ASIANLQNLKSLKIRNSPLSA-------LGPAIHHLPKLEELDLRGCTAL-----RNYP-PIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             GGGGGCTTCCEEEEESSCCCC-------CCGGGGGCTTCCEEECTTCTTC-----CBCC-CCTTCCCCCCEEECTTCTTC
T ss_pred             HhhcCCCCCCEEEccCCCCCc-------CchhhccCCCCCEEECcCCcch-----hhhH-HHhcCCCCCCEEECCCCCch
Confidence            124455566666555332111       1223566777888887765432     2233 44556677777777653211


Q ss_pred             hhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          352 FELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       352 ~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .   .++.-+..+++|+.|+|+.+.
T Consensus       267 ~---~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          267 L---TLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             C---BCCTTGGGCTTCCEEECTTCT
T ss_pred             h---hcchhhhcCCCCCEEeCCCCC
Confidence            1   223335677888888877764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.23  E-value=8.4e-11  Score=114.57  Aligned_cols=262  Identities=17%  Similarity=0.154  Sum_probs=171.3

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCc-ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPH-FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM  205 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l  205 (472)
                      +.+++|.+..             +....+|. .+..+. +|++|+|+++.+.   +..+.++++|++|+|+++.++. -.
T Consensus        52 ~~L~~L~l~~-------------n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~  116 (353)
T 2z80_A           52 EAVKSLDLSN-------------NRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LS  116 (353)
T ss_dssp             TTCCEEECTT-------------SCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CC
T ss_pred             ccCcEEECCC-------------CcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CC
Confidence            4677777642             22334554 455566 9999999998665   4568999999999999998872 12


Q ss_pred             HHHHhcCCCcceEeecccCCceeEE---EeeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeec----eEee
Q 038350          206 ENIAHNCPFLETLSLVECYRIFKVE---ITLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMV----PFDM  274 (472)
Q Consensus       206 ~~l~~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~----~~~~  274 (472)
                      ...+.++++|+.|++.++. +..+.   ....+++|+.|.+++|. ....+.    ...++|++|.+++...    +-.+
T Consensus       117 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             HhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence            2346789999999999874 23332   23456799999999985 223321    2367899999987422    2346


Q ss_pred             cCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecc-cCchh
Q 038350          275 RGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG-LERFE  353 (472)
Q Consensus       275 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~  353 (472)
                      .++++|+.+++......      .....++..+++|+.|+++++.+..... ...  ........++.+.+... .....
T Consensus       195 ~~l~~L~~L~l~~n~l~------~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l--~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          195 KSIQNVSHLILHMKQHI------LLLEIFVDVTSSVECLELRDTDLDTFHF-SEL--STGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             TTCSEEEEEEEECSCST------THHHHHHHHTTTEEEEEEESCBCTTCCC-C--------CCCCCCEEEEESCBCCHHH
T ss_pred             hccccCCeecCCCCccc------cchhhhhhhcccccEEECCCCccccccc-ccc--ccccccchhhccccccccccCcc
Confidence            67888999888754321      1233455678999999999887654322 111  11233566788888743 34455


Q ss_pred             HHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHhcC
Q 038350          354 LAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLRNS  431 (472)
Q Consensus       354 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~~  431 (472)
                      ...++..+..+++|+.|+++.+.....++          ..+     ..+++|+.+.+.+  +.+....+..+...+++.
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----------~~~-----~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~  330 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPD----------GIF-----DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  330 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCT----------TTT-----TTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCH----------HHH-----hcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhc
Confidence            66778889999999999999885432220          000     1557899999987  566655566665555544


Q ss_pred             c
Q 038350          432 R  432 (472)
Q Consensus       432 ~  432 (472)
                      .
T Consensus       331 ~  331 (353)
T 2z80_A          331 S  331 (353)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.17  E-value=2.4e-11  Score=118.00  Aligned_cols=236  Identities=13%  Similarity=0.063  Sum_probs=130.4

Q ss_pred             cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeE
Q 038350          162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRK  240 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~  240 (472)
                      +..+. +|++|+|++|.+.. +.+.++++|++|++.++.+.+  +.. +..+++|+.|++.+|.....+.....+++|+.
T Consensus        84 ~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC--chh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            33444 67777776665542 345666777777776666552  111 55667777777776654444333334557777


Q ss_pred             EEEeeccC-CceeEEEeCCCeeEEEEeeeec-eE-eecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEec
Q 038350          241 LIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-PF-DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVST  317 (472)
Q Consensus       241 L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~  317 (472)
                      |.+.+|.. .... ....++|++|.+++... .+ .+..+++|+.+++........        ..+..+++|++|++++
T Consensus       160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI--------TPVANMTRLNSLKIGN  230 (347)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCCEEECCS
T ss_pred             EEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC--------chhhcCCcCCEEEccC
Confidence            77776653 1111 12456677777665321 11 145566666666553321111        1156677777777776


Q ss_pred             ccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccc
Q 038350          318 SALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWT  397 (472)
Q Consensus       318 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~  397 (472)
                      +.+...      +  .+..+.+|+.|.+..+.-..    + ..+..+|+|+.|+++.+.....                 
T Consensus       231 n~l~~~------~--~~~~l~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~l~~n~l~~~-----------------  280 (347)
T 4fmz_A          231 NKITDL------S--PLANLSQLTWLEIGTNQISD----I-NAVKDLTKLKMLNVGSNQISDI-----------------  280 (347)
T ss_dssp             SCCCCC------G--GGTTCTTCCEEECCSSCCCC----C-GGGTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             CccCCC------c--chhcCCCCCEEECCCCccCC----C-hhHhcCCCcCEEEccCCccCCC-----------------
Confidence            654322      1  14456677777776542111    1 2356778888887776632110                 


Q ss_pred             cccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          398 TNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       398 ~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                      .....+++|+.+.+.+..-+....    ..+.+.++|+.+.++....
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEECCSSSC
T ss_pred             hhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEccCCcc
Confidence            011156788888887753332221    2345688899888876654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.15  E-value=3e-11  Score=116.57  Aligned_cols=224  Identities=15%  Similarity=0.163  Sum_probs=145.9

Q ss_pred             eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-EeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-ITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~  244 (472)
                      ++++|+|+++.+.  |+.+..+++|++|+|+++.+.  .+...+..+++|+.|++.+|.- ..+. ....+++|+.|.++
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence            8999999999876  455788999999999999887  3444567899999999998853 3221 12345799999999


Q ss_pred             eccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccc
Q 038350          245 HCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFP  324 (472)
Q Consensus       245 ~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~  324 (472)
                      +|.. ...+.   ..+....+.+     .+.++++|+.+++....-.       .++..+..+++|++|+++.+.+..+ 
T Consensus       159 ~n~~-~~~~p---~~~~~~~~~~-----~~~~l~~L~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~~l-  221 (328)
T 4fcg_A          159 ACPE-LTELP---EPLASTDASG-----EHQGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLSAL-  221 (328)
T ss_dssp             EETT-CCCCC---SCSEEEC-CC-----CEEESTTCCEEEEEEECCC-------CCCGGGGGCTTCCEEEEESSCCCCC-
T ss_pred             CCCC-ccccC---hhHhhccchh-----hhccCCCCCEEECcCCCcC-------cchHhhcCCCCCCEEEccCCCCCcC-
Confidence            9863 11110   0111111111     2345667777777654322       1234477899999999998876532 


Q ss_pred             cccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCccccccccccccc
Q 038350          325 TECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILD  404 (472)
Q Consensus       325 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  404 (472)
                           | ..+..+.+|+.|++..+.-..   .++..+..+++|+.|+|..+......               ......++
T Consensus       222 -----~-~~l~~l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~~~~~~---------------p~~~~~l~  277 (328)
T 4fcg_A          222 -----G-PAIHHLPKLEELDLRGCTALR---NYPPIFGGRAPLKRLILKDCSNLLTL---------------PLDIHRLT  277 (328)
T ss_dssp             -----C-GGGGGCTTCCEEECTTCTTCC---BCCCCTTCCCCCCEEECTTCTTCCBC---------------CTTGGGCT
T ss_pred             -----c-hhhccCCCCCEEECcCCcchh---hhHHHhcCCCCCCEEECCCCCchhhc---------------chhhhcCC
Confidence                 2 335668899999997642211   23445788999999999887422110               00112668


Q ss_pred             CccEEEEEee--ecChhhHHHHHHHHhcCccceEEEEee
Q 038350          405 HLECVQFEGF--TGKICEIDLVKFLLRNSRSIKELNIKQ  441 (472)
Q Consensus       405 ~L~~v~i~~f--~g~~~e~~~~~~ll~~~~~L~~l~i~~  441 (472)
                      +|+.+.+.+.  .+.-.+      -+.+.+.|+.+.+..
T Consensus       278 ~L~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          278 QLEKLDLRGCVNLSRLPS------LIAQLPANCIILVPP  310 (328)
T ss_dssp             TCCEEECTTCTTCCCCCG------GGGGSCTTCEEECCG
T ss_pred             CCCEEeCCCCCchhhccH------HHhhccCceEEeCCH
Confidence            9999999873  343222      245788899887763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.14  E-value=6.3e-11  Score=123.66  Aligned_cols=234  Identities=12%  Similarity=0.029  Sum_probs=116.5

Q ss_pred             CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE-EEeeCCCCeeEEEEee----------ccC-C---
Q 038350          185 VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV-EITLRTLGLRKLIVRH----------CQS-L---  249 (472)
Q Consensus       185 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~----------c~~-~---  249 (472)
                      ..+++|++|+|++|.+++..+..++.+||+|+.|++..+.....+ .+...+++|++|.+.+          |.. .   
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~  369 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG  369 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence            567778888887777777777677777888888877744221111 1122345777777774          542 1   


Q ss_pred             ceeEEEeCCCeeEEEEeeeec-e---Eeec-CCCceeEEEEEEeec-ccccC--chhhHHhhcccCCCCcEEEEeccccc
Q 038350          250 SLGIELWLPRLQYFEYAGKMV-P---FDMR-GMDDLEVVVLDYRLD-TRYSY--NGDDIESLFNPFSDARILQVSTSALK  321 (472)
Q Consensus       250 ~~~~~i~~p~L~~L~l~~~~~-~---~~~~-~~~~L~~l~l~~~~~-~~~~~--~~~~~~~ll~~l~~L~~L~l~~~~~~  321 (472)
                      ...+.-.+|+|++|.+.+... .   ..+. .+++|+.+++..... ....+  ....+..++.++++|++|+++.+.-.
T Consensus       370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~  449 (592)
T 3ogk_B          370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG  449 (592)
T ss_dssp             HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred             HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence            111122367777777743211 0   1122 366777776654220 00000  01135555666777777777432100


Q ss_pred             ccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccc
Q 038350          322 IFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGS  401 (472)
Q Consensus       322 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  401 (472)
                       +..  .........+++|+.|.+..+.  ....++..+++.||+|++|+|+.+.-   .+         ....+.  ..
T Consensus       450 -l~~--~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~l---~~---------~~~~~~--~~  510 (592)
T 3ogk_B          450 -LTD--LGLSYIGQYSPNVRWMLLGYVG--ESDEGLMEFSRGCPNLQKLEMRGCCF---SE---------RAIAAA--VT  510 (592)
T ss_dssp             -CCH--HHHHHHHHSCTTCCEEEECSCC--SSHHHHHHHHTCCTTCCEEEEESCCC---BH---------HHHHHH--HH
T ss_pred             -ccH--HHHHHHHHhCccceEeeccCCC--CCHHHHHHHHhcCcccCeeeccCCCC---cH---------HHHHHH--HH
Confidence             000  0000001225567777775431  22335666677777777777777631   10         000000  00


Q ss_pred             cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350          402 ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK  440 (472)
Q Consensus       402 ~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~  440 (472)
                      .+++|+.+.+.+..-+...   ++.+.+..+.|+...|.
T Consensus       511 ~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIP  546 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEEC
T ss_pred             hcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEec
Confidence            4567777777665433322   22344455666555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.12  E-value=1.3e-11  Score=128.78  Aligned_cols=202  Identities=15%  Similarity=0.111  Sum_probs=105.2

Q ss_pred             cCCceEEEEEEeeeeecCC---CCC-CcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeE------EEe
Q 038350          164 EQGMCIRVLNINSCGLGLC---NFV-NFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKV------EIT  232 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~~~---~~~-~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l------~i~  232 (472)
                      .+. +|++|+|++|.+...   .+. .+++|++|+|.+| .+++..+..++.+||+|++|++.+|. +...      .+.
T Consensus       103 ~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYT-WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP  180 (594)
T ss_dssp             HCT-TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred             hCC-CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence            355 777777777665421   122 5677777777776 56666677777777777777777765 2211      112


Q ss_pred             eCCCCeeEEEEeecc--C---CceeEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecc------------
Q 038350          233 LRTLGLRKLIVRHCQ--S---LSLGIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDT------------  291 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~--~---~~~~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~------------  291 (472)
                      ..+++|++|.+++|.  .   .+..+...+|+|++|++.+...    +..+..+++|+++++..+...            
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            234577777776664  1   1111222356666666654310    112233445555443221100            


Q ss_pred             -----------cccC-chhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHH
Q 038350          292 -----------RYSY-NGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIIC  359 (472)
Q Consensus       292 -----------~~~~-~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~  359 (472)
                                 .+.. ....+..++..+++|++|+++.+.+...    ... ..+..+++|++|.+..+.   ...++..
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~----~l~-~~~~~~~~L~~L~l~~~~---~~~~l~~  332 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY----DLV-KLLCQCPKLQRLWVLDYI---EDAGLEV  332 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH----HHH-HHHTTCTTCCEEEEEGGG---HHHHHHH
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH----HHH-HHHhcCCCcCEEeCcCcc---CHHHHHH
Confidence                       0000 1123344445566777777765542210    001 112346677777776542   2345666


Q ss_pred             HHhcCCCcceEEEEeC
Q 038350          360 LLISSPNITTLAISTG  375 (472)
Q Consensus       360 ll~~~p~L~~L~i~~~  375 (472)
                      +.+.||+|++|+|..+
T Consensus       333 l~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          333 LASTCKDLRELRVFPS  348 (594)
T ss_dssp             HHHHCTTCCEEEEECS
T ss_pred             HHHhCCCCCEEEEecC
Confidence            6677777777777553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=118.34  Aligned_cols=260  Identities=15%  Similarity=0.063  Sum_probs=131.1

Q ss_pred             ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE-EEeeCCC
Q 038350          161 FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV-EITLRTL  236 (472)
Q Consensus       161 ~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~  236 (472)
                      .+..+. +|++|+|+++.+.   +..+.++++|++|+|.++.++.- ....+.++++|+.|++.++.-.... .....++
T Consensus        51 ~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           51 EFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            344455 7777777776543   45567777777777777666511 1123456777777777766422111 0112345


Q ss_pred             CeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeec-e---EeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350          237 GLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMV-P---FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS  308 (472)
Q Consensus       237 ~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~  308 (472)
                      +|+.|.+.++..  ..+.    ...++|++|.+.+... .   -.+.++++|+.+++........      ....+..++
T Consensus       129 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------~~~~~~~l~  200 (477)
T 2id5_A          129 NLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI------RDYSFKRLY  200 (477)
T ss_dssp             TCCEEEECCTTC--CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE------CTTCSCSCT
T ss_pred             cCCEEECCCCcc--ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe------ChhhcccCc
Confidence            777777777642  1111    1346777777765321 1   1245667777776664322111      112355667


Q ss_pred             CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCC
Q 038350          309 DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYF  388 (472)
Q Consensus       309 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~  388 (472)
                      +|+.|+++.+...     ...+ .......+|+.|.+..+.-..   .-...+..+++|+.|+++.+.....+.  ....
T Consensus       201 ~L~~L~l~~~~~~-----~~~~-~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~  269 (477)
T 2id5_A          201 RLKVLEISHWPYL-----DTMT-PNCLYGLNLTSLSITHCNLTA---VPYLAVRHLVYLRFLNLSYNPISTIEG--SMLH  269 (477)
T ss_dssp             TCCEEEEECCTTC-----CEEC-TTTTTTCCCSEEEEESSCCCS---CCHHHHTTCTTCCEEECCSSCCCEECT--TSCT
T ss_pred             ccceeeCCCCccc-----cccC-cccccCccccEEECcCCcccc---cCHHHhcCccccCeeECCCCcCCccCh--hhcc
Confidence            7777777654221     1122 222233467777776432111   111245667777777776654221110  0000


Q ss_pred             CCCc-cccc-----cc-----ccccccCccEEEEEee--ecChhhHHHHHHHHhcCccceEEEEeeccccCc
Q 038350          389 PLSR-GEIW-----TT-----NGSILDHLECVQFEGF--TGKICEIDLVKFLLRNSRSIKELNIKQLIRATS  447 (472)
Q Consensus       389 ~~~~-~~~w-----~~-----~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~  447 (472)
                      .+.. ....     ..     ....+++|+.+.+.+-  .+...      ..+.+.++|+.+.+....-..+
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE------SVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG------GGBSCGGGCCEEECCSSCEECS
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH------hHcCCCcccCEEEccCCCccCc
Confidence            0000 0000     00     0015578888888652  22221      2346778999998876654433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.03  E-value=1.4e-10  Score=117.01  Aligned_cols=85  Identities=19%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHH-HHHhcCCCcceEeecccCCceeEE--EeeCC
Q 038350          162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAME-NIAHNCPFLETLSLVECYRIFKVE--ITLRT  235 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~cp~Le~L~l~~c~~~~~l~--i~~~~  235 (472)
                      +..+. +|++|+|+++.+.   |..+.++++|++|+|.++.+++.... ..+..+++|+.|++.++.-.+...  +...+
T Consensus        75 ~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           75 FRGLS-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TTTCT-TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             ccccc-cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            33444 7777777776543   45567777777777777776643222 235567777777777664221111  12234


Q ss_pred             CCeeEEEEeecc
Q 038350          236 LGLRKLIVRHCQ  247 (472)
Q Consensus       236 ~~L~~L~l~~c~  247 (472)
                      ++|+.|.++++.
T Consensus       154 ~~L~~L~L~~n~  165 (455)
T 3v47_A          154 RRFHVLDLTFNK  165 (455)
T ss_dssp             TTCCEEECTTCC
T ss_pred             CcccEEeCCCCc
Confidence            577777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.01  E-value=5.8e-11  Score=120.64  Aligned_cols=235  Identities=13%  Similarity=0.100  Sum_probs=119.6

Q ss_pred             CcccccCCceEEEEEEeeeeec--C-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--Eee
Q 038350          159 PHFFYEQGMCIRVLNINSCGLG--L-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--ITL  233 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~--~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--i~~  233 (472)
                      |..+..+. +|++|+|+++.+.  + ..+.++++|++|+|+++.+... ....+..+++|+.|++.++.- ..+.  ...
T Consensus        73 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~  149 (477)
T 2id5_A           73 PGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDL-VYISHRAFS  149 (477)
T ss_dssp             TTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTC-CEECTTSST
T ss_pred             hhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCcc-ceeChhhcc
Confidence            34444455 7777777777554  2 2356777777777777655411 112245677777777776542 2211  112


Q ss_pred             CCCCeeEEEEeeccCC-cee-EEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeeccccc-------------
Q 038350          234 RTLGLRKLIVRHCQSL-SLG-IELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYS-------------  294 (472)
Q Consensus       234 ~~~~L~~L~l~~c~~~-~~~-~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~-------------  294 (472)
                      .+++|+.|.+.+|... ... .-...++|+.|.+.+...    ...+..+++|+.+++..+......             
T Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  229 (477)
T 2id5_A          150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL  229 (477)
T ss_dssp             TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence            3456777777666431 000 011345666666654211    123344555555555432110000             


Q ss_pred             -----CchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350          295 -----YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT  369 (472)
Q Consensus       295 -----~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~  369 (472)
                           .-.......+..+++|+.|+++.+.+..+.     + ..+..+.+|+.|.+..+.-..   ..+..+..+++|+.
T Consensus       230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~  300 (477)
T 2id5_A          230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-----G-SMLHELLRLQEIQLVGGQLAV---VEPYAFRGLNYLRV  300 (477)
T ss_dssp             EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-----T-TSCTTCTTCCEEECCSSCCSE---ECTTTBTTCTTCCE
T ss_pred             ECcCCcccccCHHHhcCccccCeeECCCCcCCccC-----h-hhccccccCCEEECCCCccce---ECHHHhcCcccCCE
Confidence                 000011234556777777777766544221     1 334556777777776432111   11224567788888


Q ss_pred             EEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhh
Q 038350          370 LAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICE  420 (472)
Q Consensus       370 L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e  420 (472)
                      |+|+.+.....+          +..+     ..+.+|+.|.+.+  +.+....
T Consensus       301 L~L~~N~l~~~~----------~~~~-----~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          301 LNVSGNQLTTLE----------ESVF-----HSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             EECCSSCCSCCC----------GGGB-----SCGGGCCEEECCSSCEECSGGG
T ss_pred             EECCCCcCceeC----------HhHc-----CCCcccCEEEccCCCccCccch
Confidence            888776432211          0111     1557899999876  5555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.99  E-value=1.1e-10  Score=111.30  Aligned_cols=242  Identities=17%  Similarity=0.125  Sum_probs=153.3

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec--CC-CCCCcccccEEEeeeEEeChH-HHHHHHhcCCCcceEeecccCCceeE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG--LC-NFVNFIQLTSLALTRVRLSWA-AMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      ....+|..+.  . +|++|+|+++.+.  +. .+.++++|++|+|.++.++.. .....+.+++.|+.|++.++.- ..+
T Consensus        18 ~l~~ip~~~~--~-~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l   93 (306)
T 2z66_A           18 GLTSVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITM   93 (306)
T ss_dssp             CCSSCCSCCC--T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEE
T ss_pred             CcccCCCCCC--C-CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccC
Confidence            3445666542  3 8999999998776  33 368999999999999877621 1112245799999999998863 333


Q ss_pred             -EEeeCCCCeeEEEEeeccC-Cce--eEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHH
Q 038350          230 -EITLRTLGLRKLIVRHCQS-LSL--GIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIE  301 (472)
Q Consensus       230 -~i~~~~~~L~~L~l~~c~~-~~~--~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  301 (472)
                       .....+++|+.|.++++.. ...  ......++|++|.+++...    .-.+.++++|+.+++.......     ....
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~  168 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-----NFLP  168 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-----GEEC
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-----ccch
Confidence             2234567999999988753 111  1122467899999877432    1235677889988876432211     0133


Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP  381 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  381 (472)
                      ..+..+++|++|+++++.+..+     .+ ..+..+.+|+.|.+..+.-..   .....+..+++|+.|+++.+......
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQL-----SP-TAFNSLSSLQVLNMSHNNFFS---LDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECTTSCCSB---CCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             hHHhhCcCCCEEECCCCCcCCc-----CH-HHhcCCCCCCEEECCCCccCc---cChhhccCcccCCEeECCCCCCcccC
Confidence            4567889999999988765532     12 445667889999987542111   00112577899999999887432111


Q ss_pred             CCCCCCCCCCcccccccccccc-cCccEEEEEe--eecChhhHHHHHHHH
Q 038350          382 DFRPNYFPLSRGEIWTTNGSIL-DHLECVQFEG--FTGKICEIDLVKFLL  428 (472)
Q Consensus       382 ~~~~~~~~~~~~~~w~~~~~~~-~~L~~v~i~~--f~g~~~e~~~~~~ll  428 (472)
                                +..     ...+ .+|+.+.+.|  +.+......+.+++-
T Consensus       240 ----------~~~-----~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          240 ----------KQE-----LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             ----------SSS-----CCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             ----------HHH-----HHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence                      000     0122 4889999876  666666556666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.99  E-value=4.8e-11  Score=125.02  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=42.1

Q ss_pred             eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEE
Q 038350          168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l  243 (472)
                      +|++|+++++.+.  |..+.++++|++|++.++.+... ....+..+|.|+.|++.+|.....+..  ...+++|+.|.+
T Consensus       279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            6677776666554  34456666677777666655521 112345566666666666543222111  122345666666


Q ss_pred             eecc
Q 038350          244 RHCQ  247 (472)
Q Consensus       244 ~~c~  247 (472)
                      ++|.
T Consensus       358 ~~n~  361 (606)
T 3t6q_A          358 SHDD  361 (606)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.98  E-value=7.2e-09  Score=106.97  Aligned_cols=206  Identities=14%  Similarity=0.089  Sum_probs=141.0

Q ss_pred             CcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEe
Q 038350          159 PHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EIT  232 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~  232 (472)
                      |..+..+. +|++|+|+++.+.   +..+.++++|++|+|+++.+.+- ....+.++++|+.|++.++.- ..+   ...
T Consensus        43 ~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~  119 (549)
T 2z81_A           43 HGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPY-QTLGVTSLF  119 (549)
T ss_dssp             SSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCC-SSSCSSCSC
T ss_pred             hhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcc-cccchhhhh
Confidence            44555666 9999999998665   45689999999999999988732 223467899999999998853 222   223


Q ss_pred             eCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhc
Q 038350          233 LRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLF  304 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll  304 (472)
                      ..+++|+.|.+++|.. ...+.    ...++|++|.+++...    +-.+..+++|+.+++......      .....++
T Consensus       120 ~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------~~~~~~~  192 (549)
T 2z81_A          120 PNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA------FLLEIFA  192 (549)
T ss_dssp             TTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST------THHHHHH
T ss_pred             hccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc------ccchhhH
Confidence            4567999999999862 22221    2367899999987422    234567788888888754321      1223445


Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAI  377 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~  377 (472)
                      ..+++|++|+++.+.+.....   .+......+.+|+.|.+..+. .......+...+..+++|+.|++..+..
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          193 DILSSVRYLELRDTNLARFQF---SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             HSTTTBSEEEEESCBCTTCCC---CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             hhcccccEEEccCCccccccc---cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            678999999999886653321   110112346789999998542 2334556777788999999999988753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.98  E-value=1.3e-10  Score=117.23  Aligned_cols=65  Identities=20%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             CcccccCCceEEEEEEeeeeec---CC--CCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          159 PHFFYEQGMCIRVLNINSCGLG---LC--NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~---~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      |..+..+. +|++|+|++|.+.   +.  .+..+++|++|+|+++.+.......++.++++|+.|++.++.
T Consensus        96 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           96 TGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             hhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            55555666 9999999999775   22  378899999999999988743233447889999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.98  E-value=4.2e-10  Score=113.96  Aligned_cols=250  Identities=14%  Similarity=0.096  Sum_probs=132.8

Q ss_pred             cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCC
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRT  235 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~  235 (472)
                      .+|. +..+. +|++|+|+++.+.. +.+.++++|++|++.++.+.+-  .. +.++++|+.|++.+|. +..+.....+
T Consensus        60 ~l~~-~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l  133 (466)
T 1o6v_A           60 SIDG-VEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQ-ITDIDPLKNL  133 (466)
T ss_dssp             CCTT-GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred             cCcc-hhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCC-CCCChHHcCC
Confidence            3443 44456 88888888887652 2277888888888888877622  12 7788888888888874 3332223445


Q ss_pred             CCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeece-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350          236 LGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMVP-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL  313 (472)
Q Consensus       236 ~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L  313 (472)
                      ++|+.|.+++|.. .... ....++|++|.+.+.... ..+.++++|+.+++..+.....        ..+..+++|++|
T Consensus       134 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L  204 (466)
T 1o6v_A          134 TNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--------SVLAKLTNLESL  204 (466)
T ss_dssp             TTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEE
T ss_pred             CCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--------hhhccCCCCCEE
Confidence            6888888888753 1111 123567777777543221 1255677777776654321110        124566667777


Q ss_pred             EEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCC--CCCC----
Q 038350          314 QVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDF--RPNY----  387 (472)
Q Consensus       314 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~--~~~~----  387 (472)
                      .++.+.+....        ++..+.+|+.|.+..+.-..    + ..+..+|+|+.|+++.+.....+..  ....    
T Consensus       205 ~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  271 (466)
T 1o6v_A          205 IATNNQISDIT--------PLGILTNLDELSLNGNQLKD----I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  271 (466)
T ss_dssp             ECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             EecCCcccccc--------cccccCCCCEEECCCCCccc----c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence            77655433211        12234555555554321110    0 1234555555555554432111100  0000    


Q ss_pred             ---CCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          388 ---FPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       388 ---~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                         +.+..    ......+++|+.+.+.+-.-..-.  .    +.+.++|+.+.++....
T Consensus       272 l~~n~l~~----~~~~~~l~~L~~L~L~~n~l~~~~--~----~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          272 LGANQISN----ISPLAGLTALTNLELNENQLEDIS--P----ISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             CCSSCCCC----CGGGTTCTTCSEEECCSSCCSCCG--G----GGGCTTCSEEECCSSCC
T ss_pred             CCCCccCc----cccccCCCccCeEEcCCCcccCch--h----hcCCCCCCEEECcCCcC
Confidence               00000    000115577888888763222111  1    56788999988876654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.98  E-value=5.2e-10  Score=116.06  Aligned_cols=195  Identities=14%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             CcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCC
Q 038350          159 PHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTL  236 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~  236 (472)
                      |..+..+. +|++|++.++.+.  |..+..+ +|++|++.++.+.  .+..  ..++.|+.|.+.++.....+.. ..++
T Consensus       275 ~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~  347 (570)
T 2z63_A          275 IDLFNCLT-NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLP  347 (570)
T ss_dssp             TTTTGGGT-TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCT
T ss_pred             hhhhcCcC-cccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCcccccccc-ccCC
Confidence            33333444 6777777766554  2334455 6677776666554  1111  3466666666666543322222 3345


Q ss_pred             CeeEEEEeeccCCceeEE------EeCCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccC
Q 038350          237 GLRKLIVRHCQSLSLGIE------LWLPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPF  307 (472)
Q Consensus       237 ~L~~L~l~~c~~~~~~~~------i~~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l  307 (472)
                      +|+.|.+++|..  ..+.      ...++|++|.+++...   +..+.++++|+.+++........     .....+..+
T Consensus       348 ~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l  420 (570)
T 2z63_A          348 SLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-----SEFSVFLSL  420 (570)
T ss_dssp             TCCEEECCSSCC--BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC-----TTSCTTTTC
T ss_pred             CCCEEeCcCCcc--CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc-----cchhhhhcC
Confidence            666666666542  1111      1345666666654211   11255566666665543211100     001234455


Q ss_pred             CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          308 SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       308 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ++|++|+++.+.+...     .+ ..+..+.+|+.|.+..+.-.  ...++..+..+|+|+.|+++.+
T Consensus       421 ~~L~~L~l~~n~l~~~-----~~-~~~~~l~~L~~L~l~~n~l~--~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          421 RNLIYLDISHTHTRVA-----FN-GIFNGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             TTCCEEECTTSCCEEC-----CT-TTTTTCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTS
T ss_pred             CCCCEEeCcCCccccc-----ch-hhhhcCCcCcEEECcCCcCc--cccchhhhhcccCCCEEECCCC
Confidence            6666666655543211     11 23344555666655432100  0012234455666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.98  E-value=1.3e-10  Score=125.27  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=81.1

Q ss_pred             CCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccC
Q 038350          257 LPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGR  332 (472)
Q Consensus       257 ~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~  332 (472)
                      .++|++|.+.+...    +-.+.++++|+.+++..+....      ..+..+..+++|+.|++..+.+.     +..| .
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~L~~n~l~-----~~~p-~  460 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG------TIPSSLGSLSKLRDLKLWLNMLE-----GEIP-Q  460 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCC-----SCCC-G
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC------cccHHHhcCCCCCEEECCCCccc-----CcCC-H
Confidence            34566666654321    1234556666666665432111      12234566677777777666543     2223 3


Q ss_pred             CCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEE
Q 038350          333 QLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFE  412 (472)
Q Consensus       333 ~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~  412 (472)
                      .+..+.+|+.|.+..+.-..   .++..+..+++|+.|+++.+......          +  .|.   ..+++|+++.+.
T Consensus       461 ~~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~----------p--~~~---~~l~~L~~L~L~  522 (768)
T 3rgz_A          461 ELMYVKTLETLILDFNDLTG---EIPSGLSNCTNLNWISLSNNRLTGEI----------P--KWI---GRLENLAILKLS  522 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCSCC----------C--GGG---GGCTTCCEEECC
T ss_pred             HHcCCCCceEEEecCCcccC---cCCHHHhcCCCCCEEEccCCccCCcC----------C--hHH---hcCCCCCEEECC
Confidence            34556777777776442111   23344677788888888776422110          0  111   145688888887


Q ss_pred             e--eecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350          413 G--FTGKICEIDLVKFLLRNSRSIKELNIKQLI  443 (472)
Q Consensus       413 ~--f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~  443 (472)
                      +  +.|...+      -+.+.++|+.+.+....
T Consensus       523 ~N~l~~~~p~------~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          523 NNSFSGNIPA------ELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             SSCCEEECCG------GGGGCTTCCEEECCSSE
T ss_pred             CCcccCcCCH------HHcCCCCCCEEECCCCc
Confidence            6  3332221      24567888888887554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=113.93  Aligned_cols=236  Identities=14%  Similarity=0.129  Sum_probs=150.1

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE  230 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~  230 (472)
                      ....+|..+.  . ++++|+|+++.+.   +..+.++++|++|+|+++.+..-. ...+.++++|+.|+|.++. +..+.
T Consensus        54 ~l~~iP~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~  128 (440)
T 3zyj_A           54 NLREVPDGIS--T-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-LTTIP  128 (440)
T ss_dssp             CCSSCCSCCC--T-TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCC
T ss_pred             CcCcCCCCCC--C-CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-CCeeC
Confidence            3445666553  3 7899999988665   466899999999999988776211 1236789999999999874 33332


Q ss_pred             E--eeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeee-----ceEeecCCCceeEEEEEEeecccccCchhh
Q 038350          231 I--TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKM-----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDD  299 (472)
Q Consensus       231 i--~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  299 (472)
                      -  ...+++|+.|.++++..  ..+.    -..++|++|++.+..     ..-.+.++++|+.+++..+.....      
T Consensus       129 ~~~~~~l~~L~~L~L~~N~i--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------  200 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------  200 (440)
T ss_dssp             TTTSCSCSSCCEEECCSCCC--CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------
T ss_pred             HhHhhccccCceeeCCCCcc--cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------
Confidence            1  23456999999998863  3222    146789999987621     112356788888887764432211      


Q ss_pred             HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccC
Q 038350          300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMH  379 (472)
Q Consensus       300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~  379 (472)
                        .-+..+++|+.|+++++.+..+     .+ ..+..+.+|+.|.+..+.-..   .....+..+++|+.|+|+.+....
T Consensus       201 --~~~~~l~~L~~L~Ls~N~l~~~-----~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          201 --PNLTPLIKLDELDLSGNHLSAI-----RP-GSFQGLMHLQKLWMIQSQIQV---IERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             --CCCTTCSSCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECTTCCCCE---ECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             --cccCCCcccCEEECCCCccCcc-----Ch-hhhccCccCCEEECCCCceeE---EChhhhcCCCCCCEEECCCCCCCc
Confidence              1256788899999988765532     22 455677888888886542111   112346778999999998874332


Q ss_pred             CCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHH
Q 038350          380 TPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLL  428 (472)
Q Consensus       380 ~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll  428 (472)
                      .+   .       ..     ...+.+|+.|.+.+  +........+..++-
T Consensus       270 ~~---~-------~~-----~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~  305 (440)
T 3zyj_A          270 LP---H-------DL-----FTPLHHLERIHLHHNPWNCNCDILWLSWWIK  305 (440)
T ss_dssp             CC---T-------TT-----TSSCTTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred             cC---h-------hH-----hccccCCCEEEcCCCCccCCCCchHHHHHHH
Confidence            22   0       00     01457888888876  555555545554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.97  E-value=2e-09  Score=104.77  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=107.0

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE  230 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~  230 (472)
                      ....+|..++  . +|++|+|+++.+.   +..+.++++|++|+|.++.+++- ....+.++++|+.|++.++. +..+.
T Consensus        42 ~l~~iP~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~  116 (353)
T 2z80_A           42 SLNSIPSGLT--E-AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNY-LSNLS  116 (353)
T ss_dssp             TCSSCCTTCC--T-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CSSCC
T ss_pred             Cccccccccc--c-cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCc-CCcCC
Confidence            4456676553  3 7999999988665   34678999999999998877621 11236778999999999875 22222


Q ss_pred             E--eeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350          231 I--TLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS  308 (472)
Q Consensus       231 i--~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~  308 (472)
                      .  ...+++|+.|.++++..  ..+..               .-.+..+++|+.+++.......     ......+..++
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l--~~l~~---------------~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~l~  174 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPY--KTLGE---------------TSLFSHLTKLQILRVGNMDTFT-----KIQRKDFAGLT  174 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCC--SSSCS---------------SCSCTTCTTCCEEEEEESSSCC-----EECTTTTTTCC
T ss_pred             HhHhCCCccCCEEECCCCCC--cccCc---------------hhhhccCCCCcEEECCCCcccc-----ccCHHHccCCC
Confidence            1  12345777777777653  11100               0122334444444444321000     01112345667


Q ss_pred             CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          309 DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       309 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      +|++|+++++.+...     .+ ..+..+.+|++|.+..+.-..   .-..++..+++|+.|+++.+.
T Consensus       175 ~L~~L~l~~n~l~~~-----~~-~~l~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          175 FLEELEIDASDLQSY-----EP-KSLKSIQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EEEEEEEEETTCCEE-----CT-TTTTTCSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCB
T ss_pred             CCCEEECCCCCcCcc-----CH-HHHhccccCCeecCCCCcccc---chhhhhhhcccccEEECCCCc
Confidence            777777776654321     22 344556677777776542211   112345567888888887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.96  E-value=2.8e-10  Score=109.87  Aligned_cols=208  Identities=13%  Similarity=0.099  Sum_probs=122.3

Q ss_pred             eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee-EEEeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK-VEITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~l~  244 (472)
                      ++++|++.++.+.  ++.+..+++|++|+|+++.+++..+..++.+||+|+.|++.+|.-.+. ...-+.+++|++|.++
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            8999999988776  344678999999999999999888999999999999999999852211 1111235678888877


Q ss_pred             eccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCC-CCcEEEEeccccccc
Q 038350          245 HCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS-DARILQVSTSALKIF  323 (472)
Q Consensus       245 ~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~-~L~~L~l~~~~~~~~  323 (472)
                      +|.. ...               ......+.++++|+.+++..+...    ....+...+..++ +|++|+++++.... 
T Consensus       151 ~~~~-l~~---------------~~l~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~l~~~L~~L~l~~~~~~~-  209 (336)
T 2ast_B          151 GCSG-FSE---------------FALQTLLSSCSRLDELNLSWCFDF----TEKHVQVAVAHVSETITQLNLSGYRKNL-  209 (336)
T ss_dssp             TCBS-CCH---------------HHHHHHHHHCTTCCEEECCCCTTC----CHHHHHHHHHHSCTTCCEEECCSCGGGS-
T ss_pred             CCCC-CCH---------------HHHHHHHhcCCCCCEEcCCCCCCc----ChHHHHHHHHhcccCCCEEEeCCCcccC-
Confidence            7731 110               000011223444444444322100    1123566677888 88888887763211 


Q ss_pred             ccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccc
Q 038350          324 PTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSIL  403 (472)
Q Consensus       324 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  403 (472)
                      .. ...+ ..+..+++|+.|++..+.... . .....+..+|+|+.|++..+..  ..          +..  ......+
T Consensus       210 ~~-~~l~-~~~~~~~~L~~L~l~~~~~l~-~-~~~~~l~~l~~L~~L~l~~~~~--~~----------~~~--~~~l~~~  271 (336)
T 2ast_B          210 QK-SDLS-TLVRRCPNLVHLDLSDSVMLK-N-DCFQEFFQLNYLQHLSLSRCYD--II----------PET--LLELGEI  271 (336)
T ss_dssp             CH-HHHH-HHHHHCTTCSEEECTTCTTCC-G-GGGGGGGGCTTCCEEECTTCTT--CC----------GGG--GGGGGGC
T ss_pred             CH-HHHH-HHHhhCCCCCEEeCCCCCcCC-H-HHHHHHhCCCCCCEeeCCCCCC--CC----------HHH--HHHHhcC
Confidence            00 1112 223456788888886542110 1 1222456778888888877631  11          000  0011156


Q ss_pred             cCccEEEEEee
Q 038350          404 DHLECVQFEGF  414 (472)
Q Consensus       404 ~~L~~v~i~~f  414 (472)
                      ++|+.+.+.|.
T Consensus       272 ~~L~~L~l~~~  282 (336)
T 2ast_B          272 PTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeccCc
Confidence            78888888766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.96  E-value=5.2e-10  Score=113.27  Aligned_cols=233  Identities=13%  Similarity=0.063  Sum_probs=112.2

Q ss_pred             cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC------
Q 038350          162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR------  234 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~------  234 (472)
                      +..+. +|++|+++++.+.. +.+.++++|++|+|.++.+++-  .. +..+++|+.|++.+|. +..+.....      
T Consensus        86 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccc-cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            33444 66666666665441 1255666666666666555421  11 4556666666666553 111111112      


Q ss_pred             ---------------CCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCc
Q 038350          235 ---------------TLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYN  296 (472)
Q Consensus       235 ---------------~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~  296 (472)
                                     +++|+.|.+++|.. .... ....++|++|.+++... . ..++.+++|+.+++..+....    
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~----  235 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD----  235 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc----
Confidence                           33555555555432 1100 11234555555544211 0 113445555555554321110    


Q ss_pred             hhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          297 GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       297 ~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                         + ..+..+++|+.|+++++.+...        .++..+.+|+.|.+..+.-..    +.. +..+++|+.|+++.+.
T Consensus       236 ---~-~~l~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~----~~~-~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          236 ---I-GTLASLTNLTDLDLANNQISNL--------APLSGLTKLTELKLGANQISN----ISP-LAGLTALTNLELNENQ  298 (466)
T ss_dssp             ---C-GGGGGCTTCSEEECCSSCCCCC--------GGGTTCTTCSEEECCSSCCCC----CGG-GTTCTTCSEEECCSSC
T ss_pred             ---c-hhhhcCCCCCEEECCCCccccc--------hhhhcCCCCCEEECCCCccCc----ccc-ccCCCccCeEEcCCCc
Confidence               0 1244556666666655543321        113345666666665432111    111 5566777777776653


Q ss_pred             ccCCCCCCCCCCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          377 IMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                      ....+                 ....+++|+.+.+.+-.-+... .     +...++|+++.+.....
T Consensus       299 l~~~~-----------------~~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          299 LEDIS-----------------PISNLKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             CSCCG-----------------GGGGCTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSSCC
T ss_pred             ccCch-----------------hhcCCCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCCcc
Confidence            21110                 1126689999999774322111 1     46889999999986643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.95  E-value=3.4e-10  Score=114.13  Aligned_cols=235  Identities=14%  Similarity=0.102  Sum_probs=147.6

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI  231 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i  231 (472)
                      ...+|..+.  . ++++|+|+++.+.   +..+.++++|++|+|+++.+..-. ...+.++++|+.|+|.++. +..+.-
T Consensus        66 l~~iP~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~  140 (452)
T 3zyi_A           66 LSEVPQGIP--S-NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-LTVIPS  140 (452)
T ss_dssp             CSSCCSCCC--T-TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred             cCccCCCCC--C-CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-CCccCh
Confidence            345665442  3 7899999988664   566889999999999988776211 1236778999999999875 332221


Q ss_pred             --eeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeee--ceE---eecCCCceeEEEEEEeecccccCchhhH
Q 038350          232 --TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKM--VPF---DMRGMDDLEVVVLDYRLDTRYSYNGDDI  300 (472)
Q Consensus       232 --~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~--~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~  300 (472)
                        ...+++|+.|.++++..  ..+.    ...|+|++|++.+..  ..+   .+.++++|+.++++.......       
T Consensus       141 ~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------  211 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-------  211 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-------
T ss_pred             hhhcccCCCCEEECCCCCc--ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-------
Confidence              22356899999988863  3322    146788888887621  112   356778888887764432211       


Q ss_pred             HhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCC
Q 038350          301 ESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHT  380 (472)
Q Consensus       301 ~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~  380 (472)
                       .-+..+++|+.|+++++.+..+     .+ ..+..+.+|+.|.+..+.-..   .....+..+++|+.|+|+.+.....
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~-----~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEI-----RP-GSFHGLSSLKKLWVMNSQVSL---IERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEE-----CG-GGGTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -ccccccccccEEECcCCcCccc-----Cc-ccccCccCCCEEEeCCCcCce---ECHHHhcCCCCCCEEECCCCcCCcc
Confidence             1256778899999988765532     22 445567788888886542111   1123467789999999988753322


Q ss_pred             CCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHH
Q 038350          381 PDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLL  428 (472)
Q Consensus       381 ~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll  428 (472)
                      +   .       ..+     ..+.+|+.+.+.+  +........+..++-
T Consensus       282 ~---~-------~~~-----~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~  316 (452)
T 3zyi_A          282 P---H-------DLF-----TPLRYLVELHLHHNPWNCDCDILWLAWWLR  316 (452)
T ss_dssp             C---T-------TSS-----TTCTTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred             C---h-------HHh-----ccccCCCEEEccCCCcCCCCCchHHHHHHH
Confidence            2   0       000     1457888888876  555555555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.94  E-value=7.5e-11  Score=127.01  Aligned_cols=16  Identities=25%  Similarity=0.349  Sum_probs=9.0

Q ss_pred             HHhcCCCcceEEEEeC
Q 038350          360 LLISSPNITTLAISTG  375 (472)
Q Consensus       360 ll~~~p~L~~L~i~~~  375 (472)
                      .+..+++|+.|++..+
T Consensus       313 ~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          313 FFGSCSLLESLALSSN  328 (768)
T ss_dssp             GGGGCTTCCEEECCSS
T ss_pred             HHhcCCCccEEECCCC
Confidence            3455566666665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.93  E-value=2.7e-10  Score=119.22  Aligned_cols=78  Identities=18%  Similarity=0.076  Sum_probs=37.7

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE-EEeeCCCCeeEEEE
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV-EITLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l  243 (472)
                      +|++|++.++.+.   +..+.++++|++|+++++.++  .+..-+.++++|+.|++.+|.-.+.. .....+++|+.|.+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            5666666655443   223455666666666655554  12222445566666666655321110 11122346666666


Q ss_pred             eecc
Q 038350          244 RHCQ  247 (472)
Q Consensus       244 ~~c~  247 (472)
                      .+|.
T Consensus       333 ~~n~  336 (606)
T 3t6q_A          333 KGNT  336 (606)
T ss_dssp             CSCS
T ss_pred             CCCC
Confidence            5553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.93  E-value=3.7e-10  Score=109.59  Aligned_cols=274  Identities=13%  Similarity=0.064  Sum_probs=158.1

Q ss_pred             CCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeee
Q 038350          100 EFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGL  179 (472)
Q Consensus       100 ~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l  179 (472)
                      +.++.+.+.......  ...      ....+.++.|.+...             ....+| .+..+. +|++|+++++.+
T Consensus        66 ~~L~~L~l~~n~i~~--~~~------~~~l~~L~~L~L~~n-------------~i~~~~-~~~~l~-~L~~L~l~~n~i  122 (347)
T 4fmz_A           66 TNLEYLNLNGNQITD--ISP------LSNLVKLTNLYIGTN-------------KITDIS-ALQNLT-NLRELYLNEDNI  122 (347)
T ss_dssp             TTCCEEECCSSCCCC--CGG------GTTCTTCCEEECCSS-------------CCCCCG-GGTTCT-TCSEEECTTSCC
T ss_pred             CCccEEEccCCcccc--chh------hhcCCcCCEEEccCC-------------cccCch-HHcCCC-cCCEEECcCCcc
Confidence            457777765442222  111      112366777776422             122233 355566 899999988876


Q ss_pred             cC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeC
Q 038350          180 GL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWL  257 (472)
Q Consensus       180 ~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~  257 (472)
                      .. +.+..+++|++|++.++.... .+.. +..++.|+.|++.+|... .+.....+++|+.|.+++|.. .... ....
T Consensus       123 ~~~~~~~~l~~L~~L~l~~n~~~~-~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l  198 (347)
T 4fmz_A          123 SDISPLANLTKMYSLNLGANHNLS-DLSP-LSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP-LASL  198 (347)
T ss_dssp             CCCGGGTTCTTCCEEECTTCTTCC-CCGG-GTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECTTSCCCCCGG-GGGC
T ss_pred             cCchhhccCCceeEEECCCCCCcc-cccc-hhhCCCCcEEEecCCCcC-CchhhccCCCCCEEEccCCccccccc-ccCC
Confidence            52 336788888888888773321 1111 677888888888887532 221123456888888888764 1111 2346


Q ss_pred             CCeeEEEEeeeec-eE-eecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCc
Q 038350          258 PRLQYFEYAGKMV-PF-DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLF  335 (472)
Q Consensus       258 p~L~~L~l~~~~~-~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~  335 (472)
                      ++|+.|.+.+... .. .+..+++|+.+++..+....       ... +..+++|++|+++.+.+..+        ..+.
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~--------~~~~  262 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD-------LSP-LANLSQLTWLEIGTNQISDI--------NAVK  262 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCC--------GGGT
T ss_pred             CccceeecccCCCCCCchhhcCCcCCEEEccCCccCC-------Ccc-hhcCCCCCEEECCCCccCCC--------hhHh
Confidence            6788888766322 11 15677888888776442211       111 67788888888877755432        1234


Q ss_pred             ccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEeee
Q 038350          336 QFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFT  415 (472)
Q Consensus       336 ~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~  415 (472)
                      .+.+|+.|.+..+.-..    + ..+..+|+|+.|+++.+......               ......+++|+.+.+.+-.
T Consensus       263 ~l~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~L~~n~l~~~~---------------~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISD----I-SVLNNLSQLNSLFLNNNQLGNED---------------MEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCGGG---------------HHHHHTCTTCSEEECCSSS
T ss_pred             cCCCcCEEEccCCccCC----C-hhhcCCCCCCEEECcCCcCCCcC---------------hhHhhccccCCEEEccCCc
Confidence            56788888886542111    1 24677888888888777421110               0001155778888887643


Q ss_pred             cChhhHHHHHHHHhcCccceEEEEeec
Q 038350          416 GKICEIDLVKFLLRNSRSIKELNIKQL  442 (472)
Q Consensus       416 g~~~e~~~~~~ll~~~~~L~~l~i~~~  442 (472)
                      -+.-. .     +...+.|+++.+...
T Consensus       323 l~~~~-~-----~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          323 ITDIR-P-----LASLSKMDSADFANQ  343 (347)
T ss_dssp             CCCCG-G-----GGGCTTCSEESSSCC
T ss_pred             ccccc-C-----hhhhhccceeehhhh
Confidence            22222 1     456788887776543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.93  E-value=7.2e-10  Score=109.44  Aligned_cols=188  Identities=14%  Similarity=0.105  Sum_probs=92.6

Q ss_pred             ccCCceEEEEEEeeeeec--CCC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350          163 YEQGMCIRVLNINSCGLG--LCN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR  239 (472)
Q Consensus       163 ~~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~  239 (472)
                      ..+. +|++|+|+++.+.  |.. +.++++|++|+|+++.+..- ....+..++.|+.|++.++. +..+.+ ..+++|+
T Consensus       114 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~L~  189 (390)
T 3o6n_A          114 QNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR-LTHVDL-SLIPSLF  189 (390)
T ss_dssp             TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSC-CSBCCG-GGCTTCS
T ss_pred             cCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCc-CCcccc-ccccccc
Confidence            3444 7888888877665  222 56778888888877766521 11225667888888887764 222221 2235666


Q ss_pred             EEEEeeccCCceeEEEeCCCeeEEEEeeeec-eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350          240 KLIVRHCQSLSLGIELWLPRLQYFEYAGKMV-PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS  318 (472)
Q Consensus       240 ~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~  318 (472)
                      .|.+.++.  +..+. ..++|++|++++... .+.....++|+.+++.......        ...+..+++|++|+++++
T Consensus       190 ~L~l~~n~--l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~Ls~n  258 (390)
T 3o6n_A          190 HANVSYNL--LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYN  258 (390)
T ss_dssp             EEECCSSC--CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSS
T ss_pred             eeeccccc--ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--------cHHHcCCCCccEEECCCC
Confidence            66666654  22222 233566666554321 2222233455555544321111        023455556666666555


Q ss_pred             cccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          319 ALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      .+...     .+ ..+..+.+|+.|.+..+.-.    .++..+..+|+|+.|+++.+
T Consensus       259 ~l~~~-----~~-~~~~~l~~L~~L~L~~n~l~----~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          259 ELEKI-----MY-HPFVKMQRLERLYISNNRLV----ALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             CCCEE-----ES-GGGTTCSSCCEEECCSSCCC----EEECSSSCCTTCCEEECCSS
T ss_pred             cCCCc-----Ch-hHccccccCCEEECCCCcCc----ccCcccCCCCCCCEEECCCC
Confidence            43321     11 22334455555555432110    11112234555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.91  E-value=7.6e-10  Score=116.49  Aligned_cols=202  Identities=8%  Similarity=-0.000  Sum_probs=133.7

Q ss_pred             CCcccc--cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEE-eChHHHHHHHh------cCCCcceEeecccCC
Q 038350          158 LPHFFY--EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVR-LSWAAMENIAH------NCPFLETLSLVECYR  225 (472)
Q Consensus       158 lp~~~~--~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~------~cp~Le~L~l~~c~~  225 (472)
                      +|..+.  .+. +|++|+|++|.+.   |..+.++++|++|+|+++. +++..+..-+.      .+++|+.|++.+|.-
T Consensus       239 ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            888887  788 9999999999654   5678999999999999998 77523333333      469999999998863


Q ss_pred             ceeEEE---eeCCCCeeEEEEeeccCC--ceeEEEeCCCeeEEEEeeeec---eEeecCCCc-eeEEEEEEeecccccCc
Q 038350          226 IFKVEI---TLRTLGLRKLIVRHCQSL--SLGIELWLPRLQYFEYAGKMV---PFDMRGMDD-LEVVVLDYRLDTRYSYN  296 (472)
Q Consensus       226 ~~~l~i---~~~~~~L~~L~l~~c~~~--~~~~~i~~p~L~~L~l~~~~~---~~~~~~~~~-L~~l~l~~~~~~~~~~~  296 (472)
                      . .+.-   ...+++|+.|.+++|...  +. .....++|++|.+++...   +-.+.++++ |+.++++...-..    
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~----  391 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY----  391 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS----
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc----
Confidence            3 3321   235679999999998741  12 123456899999877422   123556777 8888877543211    


Q ss_pred             hhhHHhhccc--CCCCcEEEEecccccccccccccccCCCc-------ccCCceeEEEecccCchhHHHHHHHHhcCCCc
Q 038350          297 GDDIESLFNP--FSDARILQVSTSALKIFPTECLLCGRQLF-------QFWQLEHLTLNTGLERFELAAIICLLISSPNI  367 (472)
Q Consensus       297 ~~~~~~ll~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L  367 (472)
                         ++..+..  +++|++|+++.+.+..     ..| ..+.       ...+|+.|.+..+.-..   .-..+++.+++|
T Consensus       392 ---lp~~~~~~~l~~L~~L~Ls~N~l~~-----~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~---lp~~~~~~l~~L  459 (636)
T 4eco_A          392 ---IPNIFDAKSVSVMSAIDFSYNEIGS-----VDG-KNFDPLDPTPFKGINVSSINLSNNQISK---FPKELFSTGSPL  459 (636)
T ss_dssp             ---CCSCCCTTCSSCEEEEECCSSCTTT-----TTT-CSSCTTCSSCCCCCCEEEEECCSSCCCS---CCTHHHHTTCCC
T ss_pred             ---cchhhhhcccCccCEEECcCCcCCC-----cch-hhhcccccccccCCCCCEEECcCCccCc---CCHHHHccCCCC
Confidence               2223333  3489999998876542     122 2222       55688888887542111   112356778999


Q ss_pred             ceEEEEeCccc
Q 038350          368 TTLAISTGAIM  378 (472)
Q Consensus       368 ~~L~i~~~~~~  378 (472)
                      +.|+++.+...
T Consensus       460 ~~L~Ls~N~l~  470 (636)
T 4eco_A          460 SSINLMGNMLT  470 (636)
T ss_dssp             SEEECCSSCCS
T ss_pred             CEEECCCCCCC
Confidence            99999887544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.91  E-value=5.3e-09  Score=107.97  Aligned_cols=243  Identities=13%  Similarity=0.077  Sum_probs=140.0

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      .....+|..++  . +|++|+|+++.+.   +..+.++++|++|+|+++.+++- ....+.++++|+.|++.++.-.+..
T Consensus        15 ~~l~~ip~~~~--~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           15 RSFTSIPSGLT--A-AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             SCCSSCCSCCC--T-TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             CccccccccCC--C-CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccC
Confidence            34556777654  4 8999999998665   56689999999999999877621 1133678999999999988532211


Q ss_pred             E-EeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350          230 E-ITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS  308 (472)
Q Consensus       230 ~-i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~  308 (472)
                      . ....+++|+.|.+++|..  ..+               ..+-.+.++++|+.+++.......     ......+..++
T Consensus        91 ~~~~~~l~~L~~L~Ls~n~l--~~~---------------~~~~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~~l~  148 (549)
T 2z81_A           91 SSWFGPLSSLKYLNLMGNPY--QTL---------------GVTSLFPNLTNLQTLRIGNVETFS-----EIRRIDFAGLT  148 (549)
T ss_dssp             HHHHTTCTTCCEEECTTCCC--SSS---------------CSSCSCTTCTTCCEEEEEESSSCC-----EECTTTTTTCC
T ss_pred             HHHhccCCCCcEEECCCCcc--ccc---------------chhhhhhccCCccEEECCCCcccc-----ccCHhhhhccc
Confidence            1 023456788888777753  100               001123445555555554332000     00112456788


Q ss_pred             CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCC
Q 038350          309 DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYF  388 (472)
Q Consensus       309 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~  388 (472)
                      +|++|+++.+.+..     ..| ..+..+.+|++|.+..+....   .-..++..+++|+.|+++.+.....+       
T Consensus       149 ~L~~L~L~~n~l~~-----~~~-~~l~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~-------  212 (549)
T 2z81_A          149 SLNELEIKALSLRN-----YQS-QSLKSIRDIHHLTLHLSESAF---LLEIFADILSSVRYLELRDTNLARFQ-------  212 (549)
T ss_dssp             EEEEEEEEETTCCE-----ECT-TTTTTCSEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEESCBCTTCC-------
T ss_pred             ccCeeeccCCcccc-----cCh-hhhhccccCceEecccCcccc---cchhhHhhcccccEEEccCCcccccc-------
Confidence            88888888775542     233 455667788888887543221   12224567899999999887532211       


Q ss_pred             CCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeec
Q 038350          389 PLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQL  442 (472)
Q Consensus       389 ~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~  442 (472)
                       ..+  .+..  ....+|+.+.+.+-.-......-+...+.+.+.|+.+.+...
T Consensus       213 -~~~--~~~~--~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          213 -FSP--LPVD--EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             -CCC--CSSC--CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             -ccc--cchh--hhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence             000  0000  034567777776643333333333334455566666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.90  E-value=4.4e-10  Score=110.98  Aligned_cols=183  Identities=19%  Similarity=0.110  Sum_probs=80.6

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEE
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLI  242 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~  242 (472)
                      +|++|+|+++.+.   +..+.++++|++|+|.++.++. -...++.++++|+.|++.++.- ..+..  ...+++|+.|.
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEE
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEE
Confidence            6666666665443   2334566666666666655541 1111234566666666665532 11110  12234666666


Q ss_pred             EeeccCCceeEE-EeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccc
Q 038350          243 VRHCQSLSLGIE-LWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALK  321 (472)
Q Consensus       243 l~~c~~~~~~~~-i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~  321 (472)
                      ++++..  ..+. -..|+|+.|.+++.... .+...+.|+.+++.........         ....++|+.|+++++.+.
T Consensus       172 l~~n~l--~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~L~~L~l~~n~l~  239 (390)
T 3o6n_A          172 LSSNRL--THVDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVR---------GPVNVELTILKLQHNNLT  239 (390)
T ss_dssp             CCSSCC--SBCCGGGCTTCSEEECCSSCCS-EEECCSSCSEEECCSSCCCEEE---------CCCCSSCCEEECCSSCCC
T ss_pred             CCCCcC--Cccccccccccceeeccccccc-ccCCCCcceEEECCCCeeeecc---------ccccccccEEECCCCCCc
Confidence            665542  1111 12355666655543211 1122344555544422111100         012345666666555433


Q ss_pred             ccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          322 IFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       322 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ..        ..+..+.+|+.|++..+.-..   ..+..+..+++|+.|+++.+
T Consensus       240 ~~--------~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          240 DT--------AWLLNYPGLVEVDLSYNELEK---IMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             CC--------GGGGGCTTCSEEECCSSCCCE---EESGGGTTCSSCCEEECCSS
T ss_pred             cc--------HHHcCCCCccEEECCCCcCCC---cChhHccccccCCEEECCCC
Confidence            21        122345556666655331110   11223455666666666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.90  E-value=2.3e-10  Score=107.94  Aligned_cols=202  Identities=15%  Similarity=0.098  Sum_probs=109.8

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-  230 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-  230 (472)
                      ...+|..+  .. +|++|+|+++.+.   +..+..+++|++|+|.++.++.-. ...+.++++|+.|++.++..++.+. 
T Consensus        23 l~~ip~~~--~~-~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           23 LQAVPVGI--PA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             CSSCCTTC--CT-TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             cccCCcCC--CC-CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCH
Confidence            34455543  23 7999999988665   345789999999999988776211 2236778999999999886454442 


Q ss_pred             -EeeCCCCeeEEEEeeccCC-c-eeEEEeCCCeeEEEEeeeec-eE---eecCCCceeEEEEEEeecccccCchhhHHhh
Q 038350          231 -ITLRTLGLRKLIVRHCQSL-S-LGIELWLPRLQYFEYAGKMV-PF---DMRGMDDLEVVVLDYRLDTRYSYNGDDIESL  303 (472)
Q Consensus       231 -i~~~~~~L~~L~l~~c~~~-~-~~~~i~~p~L~~L~l~~~~~-~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l  303 (472)
                       ....+++|+.|.+.+|... . ....-..++|++|.+++... .+   .+..+++|+.+++....-..      .....
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~  172 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERA  172 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------ECTTT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------cCHHH
Confidence             1233568888888887631 1 00011356677777765321 11   13445555555554321110      01122


Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      +..+++|++|+++++.+...     .+ ..+..+.+|+.|++..+.-..   .....+..+|+|+.|+++.+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~-----~~-~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHV-----HP-HAFRDLGRLMTLYLFANNLSA---LPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEE-----CT-TTTTTCTTCCEEECCSSCCSC---CCHHHHTTCTTCCEEECCSS
T ss_pred             hcCccccCEEECCCCccccc-----CH-hHccCcccccEeeCCCCcCCc---CCHHHcccCcccCEEeccCC
Confidence            44455666666655543321     12 333445555666554321111   11123455566666655554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.89  E-value=4.9e-10  Score=117.10  Aligned_cols=55  Identities=22%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             eEEEEEEeeeeec--CC-CCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLG--LC-NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +|++|+|+++.+.  |+ .+.++++|++|+|+++.+..- ....+.++++|+.|++.++
T Consensus       124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTS
T ss_pred             CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCC
Confidence            5666666655443  22 235566666666665554411 1112445566666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.89  E-value=1.6e-10  Score=116.60  Aligned_cols=184  Identities=18%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             ccccEEEeeeEEeChH---HHHHHHhcCCCcceEeecccCCceeEE---E----eeCCCCeeEEEEeeccCCc------e
Q 038350          188 IQLTSLALTRVRLSWA---AMENIAHNCPFLETLSLVECYRIFKVE---I----TLRTLGLRKLIVRHCQSLS------L  251 (472)
Q Consensus       188 ~~L~~L~L~~~~~~~~---~l~~l~~~cp~Le~L~l~~c~~~~~l~---i----~~~~~~L~~L~l~~c~~~~------~  251 (472)
                      ++|++|+|.++.+++.   .+...+..|+.|+.|++.+|. ++...   +    ....++|++|.+++|....      .
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  220 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  220 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence            3455555555544432   233334445555555555543 11110   0    0012366666666665311      1


Q ss_pred             eEEEeCCCeeEEEEeeeec-e--------EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccc
Q 038350          252 GIELWLPRLQYFEYAGKMV-P--------FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKI  322 (472)
Q Consensus       252 ~~~i~~p~L~~L~l~~~~~-~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~  322 (472)
                      ...-..++|++|++++... .        .....+++|+.+++..+.-..  .....+...+..+++|++|+++++.+..
T Consensus       221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH--HHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH--HHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            1111356777777765321 0        011246667777665432110  0011245556667888888887765432


Q ss_pred             cccccccccCCC-cccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          323 FPTECLLCGRQL-FQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       323 ~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ... .... ..+ ....+|+.|.+..+. .......+...+..+++|+.|+++.+.
T Consensus       299 ~~~-~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          299 EGA-RLLC-ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HHH-HHHH-HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             HHH-HHHH-HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence            110 0000 001 122477888877543 223345667777888888888887763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.87  E-value=4.6e-10  Score=107.42  Aligned_cols=199  Identities=15%  Similarity=0.071  Sum_probs=111.5

Q ss_pred             cCCcccccCCceEEEEEEee-eeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-E
Q 038350          157 VLPHFFYEQGMCIRVLNINS-CGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-I  231 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~-~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i  231 (472)
                      .+|..+.... +|++|+|++ +.+.   |..+.++++|++|+|+++.++. .+...+..+++|+.|++.++.-.+.+. .
T Consensus        67 ~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           67 PIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             ECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence            5677777777 888888885 5443   4557888888888888887652 122236678888888888764221111 1


Q ss_pred             eeCCCCeeEEEEeeccCCce-eE---EEeCC-CeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHh
Q 038350          232 TLRTLGLRKLIVRHCQSLSL-GI---ELWLP-RLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIES  302 (472)
Q Consensus       232 ~~~~~~L~~L~l~~c~~~~~-~~---~i~~p-~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  302 (472)
                      ...+++|+.|.++++..  . .+   ....+ +|++|.+++...    +-.+..+. |+.++++......      ....
T Consensus       145 ~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~------~~~~  215 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------DASV  215 (313)
T ss_dssp             GGGCTTCCEEECCSSCC--EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE------CCGG
T ss_pred             HhcCCCCCeEECcCCcc--cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC------cCCH
Confidence            22356888888887763  1 11   01223 677777765321    11233333 6666554322111      1234


Q ss_pred             hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+..+++|+.|+++.+.+..     ..+  .+..+.+|+.|++..+.-..   .++..+..+++|+.|+++.+.
T Consensus       216 ~~~~l~~L~~L~L~~N~l~~-----~~~--~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          216 LFGSDKNTQKIHLAKNSLAF-----DLG--KVGLSKNLNGLDLRNNRIYG---TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECC-----BGG--GCCCCTTCCEEECCSSCCEE---CCCGGGGGCTTCCEEECCSSE
T ss_pred             HHhcCCCCCEEECCCCceee-----ecC--cccccCCCCEEECcCCcccC---cCChHHhcCcCCCEEECcCCc
Confidence            45666777777776665431     111  13345667777765432111   223345666777777776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.86  E-value=5.2e-10  Score=112.78  Aligned_cols=195  Identities=16%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCC
Q 038350          162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTL  236 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~  236 (472)
                      +..+. +|++|+|+++.+.   +..+.++++|++|+|+++.++. -....+.++++|+.|++.++. +..+.-  ...++
T Consensus        95 ~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  171 (452)
T 3zyi_A           95 FRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVP  171 (452)
T ss_dssp             TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCT
T ss_pred             cCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCC
Confidence            33444 7777777766543   3456667777777777665551 111224556777777776654 222211  12345


Q ss_pred             CeeEEEEeeccCCceeEEE----eCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCC
Q 038350          237 GLRKLIVRHCQSLSLGIEL----WLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDA  310 (472)
Q Consensus       237 ~L~~L~l~~c~~~~~~~~i----~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L  310 (472)
                      +|+.|.+.+|. .+..+..    ..++|++|.+++... . -.+..+++|+.++++......      .....+..+++|
T Consensus       172 ~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L  244 (452)
T 3zyi_A          172 SLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE------IRPGSFHGLSSL  244 (452)
T ss_dssp             TCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE------ECGGGGTTCTTC
T ss_pred             cccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc------cCcccccCccCC
Confidence            66666666654 2222221    245666666654311 1 123445556665554321111      112334555666


Q ss_pred             cEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          311 RILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       311 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      +.|.++.+.+..+.     + ..+..+.+|+.|++..+.-..   .....+..+++|+.|+|+.+
T Consensus       245 ~~L~L~~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          245 KKLWVMNSQVSLIE-----R-NAFDGLASLVELNLAHNNLSS---LPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CEEECTTSCCCEEC-----T-TTTTTCTTCCEEECCSSCCSC---CCTTSSTTCTTCCEEECCSS
T ss_pred             CEEEeCCCcCceEC-----H-HHhcCCCCCCEEECCCCcCCc---cChHHhccccCCCEEEccCC
Confidence            66666555443211     1 233445555666554321100   01123445566666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.86  E-value=8.5e-10  Score=115.47  Aligned_cols=144  Identities=14%  Similarity=0.146  Sum_probs=85.2

Q ss_pred             cCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEE
Q 038350          164 EQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLI  242 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~  242 (472)
                      .+. +|++|++.++.+.. +.+..+++|++|++.++.+.  .+..+  .++.|+.|++.+|.....+.+ ..+++|+.|.
T Consensus       283 ~l~-~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~  356 (606)
T 3vq2_A          283 CLA-NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLD  356 (606)
T ss_dssp             GGT-TCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEE
T ss_pred             cCC-CCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhh-ccCCCCCEEE
Confidence            344 78888888876652 35677888888888888774  33333  788888888888865554432 2456788888


Q ss_pred             EeeccCCceeEE------EeCCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350          243 VRHCQSLSLGIE------LWLPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL  313 (472)
Q Consensus       243 l~~c~~~~~~~~------i~~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L  313 (472)
                      +++|..  ..+.      ...++|++|.+++...   +-.+.++++|+.+++........     .....+..+++|++|
T Consensus       357 ls~n~l--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          357 LSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-----TEFSAFLSLEKLLYL  429 (606)
T ss_dssp             CCSSCE--EEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST-----TTTTTTTTCTTCCEE
T ss_pred             CcCCcc--CCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc-----cChhhhhccccCCEE
Confidence            877752  2221      2456777777765321   12355667777776653321110     001234455666666


Q ss_pred             EEecccc
Q 038350          314 QVSTSAL  320 (472)
Q Consensus       314 ~l~~~~~  320 (472)
                      +++.+.+
T Consensus       430 ~l~~n~l  436 (606)
T 3vq2_A          430 DISYTNT  436 (606)
T ss_dssp             ECTTSCC
T ss_pred             ECcCCCC
Confidence            6655543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.85  E-value=3.6e-10  Score=118.31  Aligned_cols=75  Identities=24%  Similarity=0.114  Sum_probs=35.6

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENI  208 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l  208 (472)
                      ++++.+.+....             ...+| .+..+. +|++|++.+|.+.. +.+ .+++|++|++.++......   -
T Consensus       285 ~~L~~L~l~~~~-------------~~~l~-~l~~~~-~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~  345 (606)
T 3vq2_A          285 ANVSAMSLAGVS-------------IKYLE-DVPKHF-KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---K  345 (606)
T ss_dssp             TTCSEEEEESCC-------------CCCCC-CCCTTC-CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---C
T ss_pred             CCCCEEEecCcc-------------chhhh-hccccc-cCCEEEcccccCcccccC-CCCccceeeccCCcCccch---h
Confidence            667777765321             12233 333344 66666666655531 233 5555555555554222110   1


Q ss_pred             HhcCCCcceEeeccc
Q 038350          209 AHNCPFLETLSLVEC  223 (472)
Q Consensus       209 ~~~cp~Le~L~l~~c  223 (472)
                      +..+|+|+.|++.+|
T Consensus       346 ~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          346 KVALPSLSYLDLSRN  360 (606)
T ss_dssp             CCCCTTCCEEECCSS
T ss_pred             hccCCCCCEEECcCC
Confidence            334555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.85  E-value=1.2e-08  Score=111.00  Aligned_cols=64  Identities=22%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             CcccccCCceEEEEEEeeeeec---CCC--CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          159 PHFFYEQGMCIRVLNINSCGLG---LCN--FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~---~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      |..+..+. +|++|+|++|.+.   +..  +.++++|++|+|+++.+........+.++++|+.|++.++
T Consensus        90 p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           90 PDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             TTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             HhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            44444445 6666666666553   222  4566666666666665542222233555666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.85  E-value=1.4e-09  Score=113.59  Aligned_cols=197  Identities=15%  Similarity=0.063  Sum_probs=135.1

Q ss_pred             CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      +....+|..+|...++|++|+|++|.+.   +..+.++++|++|+|+++.++.-.    +..+|.|+.|++.++. +..+
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~-l~~l  207 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTL  207 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC-CSEE
T ss_pred             CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc-cccc
Confidence            3445677766543339999999999765   445889999999999999887422    5678999999999874 3444


Q ss_pred             EEeeCCCCeeEEEEeeccCCceeEE-EeCCCeeEEEEeeeec--eEeecCCCceeEEEEEEeecccccCchhhHHhhccc
Q 038350          230 EITLRTLGLRKLIVRHCQSLSLGIE-LWLPRLQYFEYAGKMV--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNP  306 (472)
Q Consensus       230 ~i~~~~~~L~~L~l~~c~~~~~~~~-i~~p~L~~L~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~  306 (472)
                      ...   ++|+.|.++++..  ..+. ...++|+.|.+.+...  ...+..+++|+.++++......      ..+..+..
T Consensus       208 ~~~---~~L~~L~ls~n~l--~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~  276 (597)
T 3oja_B          208 AIP---IAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK------IMYHPFVK  276 (597)
T ss_dssp             ECC---TTCSEEECCSSCC--CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE------EESGGGTT
T ss_pred             cCC---chhheeeccCCcc--cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC------CCHHHhcC
Confidence            322   4899999998863  2222 1236899999877422  2346778889998887543211      22345678


Q ss_pred             CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          307 FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       307 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      +++|+.|+++++.+..+      | .....+++|+.|.+..+.-.    .++.-+..+|+|+.|+|..+.
T Consensus       277 l~~L~~L~Ls~N~l~~l------~-~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          277 MQRLERLYISNNRLVAL------N-LYGQPIPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CSSCCEEECTTSCCCEE------E-CSSSCCTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCSSC
T ss_pred             ccCCCEEECCCCCCCCC------C-cccccCCCCcEEECCCCCCC----ccCcccccCCCCCEEECCCCC
Confidence            89999999988765532      2 33345788999998754211    233334667899999988874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.84  E-value=7.3e-10  Score=109.27  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             cCCcccccCCceEEEEEEeeeeecC-------CCCCCcccccEEEeeeEEeC------hHHH---HHHHhcCCCcceEee
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLGL-------CNFVNFIQLTSLALTRVRLS------WAAM---ENIAHNCPFLETLSL  220 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~~-------~~~~~~~~L~~L~L~~~~~~------~~~l---~~l~~~cp~Le~L~l  220 (472)
                      .++..+..+. +|++|+|++|.+..       ..+..+++|++|+|+++.+.      ..++   ...+..+++|+.|+|
T Consensus        23 ~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3444444555 66666666665542       12456666777766665322      1122   223445667777776


Q ss_pred             cccCCce----eE-EEeeCCCCeeEEEEeecc
Q 038350          221 VECYRIF----KV-EITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       221 ~~c~~~~----~l-~i~~~~~~L~~L~l~~c~  247 (472)
                      .+|.-..    .+ ..-..+++|+.|.+++|.
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            6654211    01 001223466666666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.83  E-value=4.8e-09  Score=107.61  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=40.1

Q ss_pred             eEEEEEEeeeeecC---CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~  244 (472)
                      +|++|+|+++.+..   ..+.++++|++|+|+++.+++- ....+.++++|+.|++.++. +..+... .+++|++|.++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~L~   98 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK-LVKISCH-PTVNLKHLDLS   98 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC-CCEEECC-CCCCCSEEECC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc-eeecCcc-ccCCccEEecc
Confidence            56666666665441   2345666666666666655411 01224556666666666553 2333222 34566666666


Q ss_pred             ecc
Q 038350          245 HCQ  247 (472)
Q Consensus       245 ~c~  247 (472)
                      +|.
T Consensus        99 ~N~  101 (520)
T 2z7x_B           99 FNA  101 (520)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.82  E-value=2e-09  Score=111.66  Aligned_cols=95  Identities=18%  Similarity=0.228  Sum_probs=41.3

Q ss_pred             eEEEEEEeee-eec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEE
Q 038350          168 CIRVLNINSC-GLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~-~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l  243 (472)
                      +++.+.+.++ .+.   +..+..+++|++|++.++.+.  .+...+..+ .|+.|++.+|.-. .+.. ..+++|+.|.+
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l  332 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTF  332 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeC
Confidence            4455555443 222   233455555555555555544  122223334 5555555555321 1111 22345555555


Q ss_pred             eeccCCceeEEEeCCCeeEEEEee
Q 038350          244 RHCQSLSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       244 ~~c~~~~~~~~i~~p~L~~L~l~~  267 (472)
                      .++...........|+|++|++++
T Consensus       333 ~~n~~~~~~~~~~~~~L~~L~l~~  356 (570)
T 2z63_A          333 TSNKGGNAFSEVDLPSLEFLDLSR  356 (570)
T ss_dssp             ESCBSCCBCCCCBCTTCCEEECCS
T ss_pred             cCCccccccccccCCCCCEEeCcC
Confidence            555421000013445555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.82  E-value=1e-10  Score=112.22  Aligned_cols=228  Identities=12%  Similarity=0.081  Sum_probs=124.7

Q ss_pred             eEEEEEEeeeeecC---CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~  244 (472)
                      +|++|+|+++.+..   ..+..+++|++|+|+++.+++..  . +..+++|+.|++.+|. +..+.   ..++|+.|.++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECC
Confidence            56666666665542   23456666666666666554111  1 5566666766666653 22222   12466777666


Q ss_pred             eccCCceeE-EEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350          245 HCQSLSLGI-ELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA  319 (472)
Q Consensus       245 ~c~~~~~~~-~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~  319 (472)
                      ++..  ..+ ....++|++|.+++..    .+..+..+++|+.++++.......     ....+...+++|++|+++.+.
T Consensus       108 ~n~l--~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          108 NNNI--SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----NFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             SSCC--SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-----EGGGGGGGTTTCCEEECTTSC
T ss_pred             CCcc--CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-----cHHHHhhccCcCCEEECCCCc
Confidence            6652  222 2235667777766532    123455667777776654321110     122445578899999998876


Q ss_pred             ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccc
Q 038350          320 LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN  399 (472)
Q Consensus       320 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~  399 (472)
                      +..+.        ....+.+|+.|.++.+.-.    .++.-+..+++|+.|+++.+.....++                .
T Consensus       181 l~~~~--------~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~L~~N~l~~l~~----------------~  232 (317)
T 3o53_A          181 IYDVK--------GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVLIEK----------------A  232 (317)
T ss_dssp             CCEEE--------CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCEECT----------------T
T ss_pred             Ccccc--------cccccccCCEEECCCCcCC----cchhhhcccCcccEEECcCCcccchhh----------------H
Confidence            65432        1123778899988754211    222236778999999998874322220                0


Q ss_pred             cccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350          400 GSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK  440 (472)
Q Consensus       400 ~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~  440 (472)
                      ...+++|+.+.+.+-.-...   .+...+.+.+.|+.+.+.
T Consensus       233 ~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          233 LRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             hhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence            11456888888876433311   222344455666655554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.81  E-value=3.2e-10  Score=114.48  Aligned_cols=43  Identities=16%  Similarity=0.050  Sum_probs=24.6

Q ss_pred             cccCccEEEEEeeecC-hhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          402 ILDHLECVQFEGFTGK-ICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       402 ~~~~L~~v~i~~f~g~-~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                      .+++|+.+.+.+-.-+ .....+.+.+..+.+.|+++.+.....
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence            3567888877653222 222234444444556888888876553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.80  E-value=7.5e-09  Score=112.59  Aligned_cols=60  Identities=18%  Similarity=0.072  Sum_probs=36.0

Q ss_pred             CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          308 SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       308 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ++++.|+++.+.+..+     .+ ..+..+.+|+.|.+..+.-..   ..+..+..+++|+.|+++.+.
T Consensus       266 ~~L~~L~Ls~n~l~~~-----~~-~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-----NS-RVFETLKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SCCCEEECTTCCCCEE-----CS-CCSSSCCCCCEEEEESCCCCE---ECTTTTTTCSSCCEEEEESCC
T ss_pred             CCccEEECCCCccccc-----Ch-hhhhcCCCCCEEECCCCcCCC---CChHHhcCCCCCCEEECCCCC
Confidence            5788888877654322     12 345567778888877542111   112235677888888887774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.80  E-value=7.6e-10  Score=111.19  Aligned_cols=194  Identities=14%  Similarity=0.084  Sum_probs=91.8

Q ss_pred             cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCe
Q 038350          164 EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGL  238 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L  238 (472)
                      .+. +|++|+|+++.+.   +..|.++++|++|+|.++.++.- ....+..+++|+.|++.++. +..+.-  ...+++|
T Consensus        86 ~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           86 HLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSL  162 (440)
T ss_dssp             SCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTC
T ss_pred             CCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCc-ccccCHHHhhhCccc
Confidence            344 6777777666443   23456666677777766655510 11124556666666666654 222211  1224566


Q ss_pred             eEEEEeeccCCceeEEE----eCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcE
Q 038350          239 RKLIVRHCQSLSLGIEL----WLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARI  312 (472)
Q Consensus       239 ~~L~l~~c~~~~~~~~i----~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~  312 (472)
                      +.|.+.+|. ....+..    ..++|++|.+++... . -.+..+++|+.++++......      .....+..+++|+.
T Consensus       163 ~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          163 RRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA------IRPGSFQGLMHLQK  235 (440)
T ss_dssp             CEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE------ECTTTTTTCTTCCE
T ss_pred             CEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc------cChhhhccCccCCE
Confidence            666666654 2222211    245566666654311 1 123445556665554321111      11233455666666


Q ss_pred             EEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          313 LQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       313 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      |.++.+.+..+.     + ..+..+.+|+.|+|..+.-..   .....+..+++|+.|+|+.++
T Consensus       236 L~L~~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          236 LWMIQSQIQVIE-----R-NAFDNLQSLVEINLAHNNLTL---LPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EECTTCCCCEEC-----T-TSSTTCTTCCEEECTTSCCCC---CCTTTTSSCTTCCEEECCSSC
T ss_pred             EECCCCceeEEC-----h-hhhcCCCCCCEEECCCCCCCc---cChhHhccccCCCEEEcCCCC
Confidence            666655443221     1 233445556666654321110   011234555666666665553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.80  E-value=5.6e-10  Score=113.62  Aligned_cols=206  Identities=13%  Similarity=0.079  Sum_probs=129.0

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~  244 (472)
                      +|++|+|+++.+.   |..+..+++|++|+|+++.+++..  . +..+++|+.|+|.+|. +..+.   ..++|+.|.++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECc
Confidence            7888888887665   335678888888888877665211  1 6678888888888764 33333   22588888888


Q ss_pred             eccCCceeE-EEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350          245 HCQSLSLGI-ELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA  319 (472)
Q Consensus       245 ~c~~~~~~~-~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~  319 (472)
                      +|..  ..+ ....|+|+.|.+++..    .+..++.+++|+.++++......     .....+...+++|++|+++++.
T Consensus       108 ~N~l--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          108 NNNI--SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             SSCC--CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSC
T ss_pred             CCcC--CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHHhhhCCcccEEecCCCc
Confidence            8763  222 2245788888887632    23456678888888776432211     1223444578999999998887


Q ss_pred             ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccc
Q 038350          320 LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN  399 (472)
Q Consensus       320 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~  399 (472)
                      +..+      +  +...+.+|+.|+++.+.-.    +++.-+..+|+|+.|+++.+.....++                .
T Consensus       181 l~~~------~--~~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~----------------~  232 (487)
T 3oja_A          181 IYDV------K--GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVLIEK----------------A  232 (487)
T ss_dssp             CCEE------E--CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCEECT----------------T
T ss_pred             cccc------c--ccccCCCCCEEECCCCCCC----CCCHhHcCCCCccEEEecCCcCcccch----------------h
Confidence            6533      1  1224778999998754211    222236788999999998875332220                0


Q ss_pred             cccccCccEEEEEeee
Q 038350          400 GSILDHLECVQFEGFT  415 (472)
Q Consensus       400 ~~~~~~L~~v~i~~f~  415 (472)
                      ...+++|+.+.+.|-.
T Consensus       233 l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          233 LRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CCCCTTCCEEECTTCC
T ss_pred             hccCCCCCEEEcCCCC
Confidence            1144678888776643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.78  E-value=6.8e-10  Score=106.00  Aligned_cols=189  Identities=14%  Similarity=0.112  Sum_probs=114.7

Q ss_pred             HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHH
Q 038350          129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMEN  207 (472)
Q Consensus       129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~  207 (472)
                      -+++++|.+...             ....+| .+..+. +|++|+|++|.+.. +.+..+++|++|+|+++.+.+  +. 
T Consensus        40 l~~L~~L~l~~~-------------~i~~l~-~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~--~~-  101 (308)
T 1h6u_A           40 LDGITTLSAFGT-------------GVTTIE-GVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-  101 (308)
T ss_dssp             HHTCCEEECTTS-------------CCCCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-
T ss_pred             cCCcCEEEeeCC-------------CccCch-hhhccC-CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC--ch-
Confidence            467888877421             222344 344556 89999998887752 227888899999998888773  22 


Q ss_pred             HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEE
Q 038350          208 IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDY  287 (472)
Q Consensus       208 l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~  287 (472)
                      -+..+++|+.|++.+|. +..+.-...+++|+.|.+++|..  ..+                .  .+..+++|+.+++..
T Consensus       102 ~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l--~~~----------------~--~l~~l~~L~~L~l~~  160 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQI--TNI----------------S--PLAGLTNLQYLSIGN  160 (308)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCC--CCC----------------G--GGGGCTTCCEEECCS
T ss_pred             hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCcc--CcC----------------c--cccCCCCccEEEccC
Confidence            36778899999998875 23222223456777777777653  110                0  033445555554443


Q ss_pred             eecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCc
Q 038350          288 RLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNI  367 (472)
Q Consensus       288 ~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L  367 (472)
                      +.-..       +.. +..+++|+.|+++.+.+..+.        .+..+.+|++|.+..+.-..    +.. +..+|+|
T Consensus       161 n~l~~-------~~~-l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~N~l~~----~~~-l~~l~~L  219 (308)
T 1h6u_A          161 AQVSD-------LTP-LANLSKLTTLKADDNKISDIS--------PLASLPNLIEVHLKNNQISD----VSP-LANTSNL  219 (308)
T ss_dssp             SCCCC-------CGG-GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECTTSCCCB----CGG-GTTCTTC
T ss_pred             CcCCC-------Chh-hcCCCCCCEEECCCCccCcCh--------hhcCCCCCCEEEccCCccCc----ccc-ccCCCCC
Confidence            21111       111 567788888888877654321        14557788888886542111    111 6788889


Q ss_pred             ceEEEEeCcc
Q 038350          368 TTLAISTGAI  377 (472)
Q Consensus       368 ~~L~i~~~~~  377 (472)
                      +.|+++.+.-
T Consensus       220 ~~L~l~~N~i  229 (308)
T 1h6u_A          220 FIVTLTNQTI  229 (308)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEccCCee
Confidence            9988887753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.74  E-value=4.2e-10  Score=107.74  Aligned_cols=216  Identities=11%  Similarity=-0.026  Sum_probs=143.2

Q ss_pred             HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350          129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM  205 (472)
Q Consensus       129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l  205 (472)
                      -+.++.|.+.-.+           .....+|..+..+. +|++|+|+++.+.   |..+..+++|++|+|+++.+.. .+
T Consensus        75 l~~L~~L~L~~~n-----------~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~  141 (313)
T 1ogq_A           75 LPYLNFLYIGGIN-----------NLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TL  141 (313)
T ss_dssp             CTTCSEEEEEEET-----------TEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CC
T ss_pred             CCCCCeeeCCCCC-----------cccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cC
Confidence            3788888886211           12235677777777 9999999999775   4567899999999999998763 22


Q ss_pred             HHHHhcCCCcceEeecccCCceeEEE-eeCCC-CeeEEEEeeccCCceeE---EEeCCCeeEEEEeeee----ceEeecC
Q 038350          206 ENIAHNCPFLETLSLVECYRIFKVEI-TLRTL-GLRKLIVRHCQSLSLGI---ELWLPRLQYFEYAGKM----VPFDMRG  276 (472)
Q Consensus       206 ~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~-~L~~L~l~~c~~~~~~~---~i~~p~L~~L~l~~~~----~~~~~~~  276 (472)
                      ...+..+++|+.|++.++.-.+.+.. ...++ +|+.|.++++..  ...   .+...+|++|++++..    .+..+..
T Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l--~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~  219 (313)
T 1ogq_A          142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--EEECCGGGGGCCCSEEECCSSEEEECCGGGCCT
T ss_pred             ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee--eccCChHHhCCcccEEECcCCcccCcCCHHHhc
Confidence            23467899999999998863322211 12233 899999998862  111   1122249999987742    2234678


Q ss_pred             CCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHH
Q 038350          277 MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAA  356 (472)
Q Consensus       277 ~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  356 (472)
                      +++|+.+++.......      .. ..+..+++|++|+++.+.+.     +..| ..+..+.+|+.|++..+.-..   .
T Consensus       220 l~~L~~L~L~~N~l~~------~~-~~~~~l~~L~~L~Ls~N~l~-----~~~p-~~l~~l~~L~~L~Ls~N~l~~---~  283 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAF------DL-GKVGLSKNLNGLDLRNNRIY-----GTLP-QGLTQLKFLHSLNVSFNNLCG---E  283 (313)
T ss_dssp             TSCCSEEECCSSEECC------BG-GGCCCCTTCCEEECCSSCCE-----ECCC-GGGGGCTTCCEEECCSSEEEE---E
T ss_pred             CCCCCEEECCCCceee------ec-CcccccCCCCEEECcCCccc-----CcCC-hHHhcCcCCCEEECcCCcccc---c
Confidence            8999999887543221      11 22567899999999988664     2334 456678899999997542111   1


Q ss_pred             HHHHHhcCCCcceEEEEeCc
Q 038350          357 IICLLISSPNITTLAISTGA  376 (472)
Q Consensus       357 l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ++.. ..+++|+.|.+..++
T Consensus       284 ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          284 IPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCS-TTGGGSCGGGTCSSS
T ss_pred             CCCC-ccccccChHHhcCCC
Confidence            2222 567788888777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.74  E-value=5.8e-08  Score=99.48  Aligned_cols=67  Identities=21%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCccc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIM  378 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~  378 (472)
                      ..+++|++|+++.+.+..     ..| ..+..+.+|+.|.+..+.- .....++..+..+++|+.|+++.+...
T Consensus       321 ~~l~~L~~L~Ls~n~l~~-----~~~-~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTD-----TVF-ENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             SSCCCCCEEECCSSCCCT-----TTT-TTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             hhCCcccEEEeECCccCh-----hhh-hhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCC
Confidence            577889999998776542     233 4556788999999975421 234466778899999999999887543

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.74  E-value=3.7e-09  Score=71.99  Aligned_cols=36  Identities=19%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      ..+.++.||+||+.+||++||.+|+++++.|||+|+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~   40 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWY   40 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.73  E-value=1.1e-10  Score=111.21  Aligned_cols=202  Identities=19%  Similarity=0.144  Sum_probs=117.7

Q ss_pred             ccCCcccc-cCCceEEEEEEeeeeec-----CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          156 YVLPHFFY-EQGMCIRVLNINSCGLG-----LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       156 ~~lp~~~~-~~~~~L~~L~L~~~~l~-----~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      ..+|...| .+. +|++|+|+++.+.     +..+.++++|++|+|+++.+.  .+...+..+++|+.|++.++. +..+
T Consensus        41 ~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~-l~~~  116 (306)
T 2z66_A           41 QSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSN-LKQM  116 (306)
T ss_dssp             CCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSE-EESS
T ss_pred             CccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccc--cChhhcCCCCCCCEEECCCCc-cccc
Confidence            35565544 344 8888888877654     233456788888888877655  121225567888888888763 1111


Q ss_pred             ---EEeeCCCCeeEEEEeeccCC--ceeEEEeCCCeeEEEEeeee-----ceEeecCCCceeEEEEEEeecccccCchhh
Q 038350          230 ---EITLRTLGLRKLIVRHCQSL--SLGIELWLPRLQYFEYAGKM-----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDD  299 (472)
Q Consensus       230 ---~i~~~~~~L~~L~l~~c~~~--~~~~~i~~p~L~~L~l~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  299 (472)
                         .....+++|+.|.+++|...  .....-..++|++|.+++..     .+-.+..+++|+.++++...-..      .
T Consensus       117 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~  190 (306)
T 2z66_A          117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------L  190 (306)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------E
T ss_pred             ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC------c
Confidence               11233568888888777530  00001135678888876632     12345677888888776432111      1


Q ss_pred             HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCC-CcceEEEEeCc
Q 038350          300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSP-NITTLAISTGA  376 (472)
Q Consensus       300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p-~L~~L~i~~~~  376 (472)
                      ....+..+++|++|+++++.+..+..      ..+..+.+|+.|++..+.-..   ..+..+..+| +|+.|+++.+.
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHIMT---SKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBCCS------GGGTTCTTCCEEECTTSCCCB---CSSSSCCCCCTTCCEEECTTCC
T ss_pred             CHHHhcCCCCCCEEECCCCccCccCh------hhccCcccCCEeECCCCCCcc---cCHHHHHhhhccCCEEEccCCC
Confidence            12445677888888888776543221      234557788888886542111   1122345554 88888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.71  E-value=1.2e-09  Score=115.00  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=60.2

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeee-ec----CCCCCC------cccccEEEeeeE
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG-LG----LCNFVN------FIQLTSLALTRV  198 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~-l~----~~~~~~------~~~L~~L~L~~~  198 (472)
                      +.++.|.+....            ....+|..+.... +|++|+|+++. +.    |..+..      +++|++|+|.++
T Consensus       249 ~~L~~L~L~~n~------------l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          249 KDLTDVEVYNCP------------NLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             TTCCEEEEECCT------------TCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             CCCCEEEecCCc------------CCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence            667788776321            1235666666666 88888888775 43    222333      378888888877


Q ss_pred             EeChHHHHH--HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350          199 RLSWAAMEN--IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC  246 (472)
Q Consensus       199 ~~~~~~l~~--l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c  246 (472)
                      .++  .+..  .+..+++|+.|++.++.-.+.+.....+++|+.|.++++
T Consensus       316 ~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          316 NLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             CCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred             cCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence            776  3333  466778888888877653322221111235555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=5.7e-09  Score=112.70  Aligned_cols=205  Identities=13%  Similarity=0.035  Sum_probs=130.8

Q ss_pred             CCcccc--cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEE-eCh----HHHHHH---HhcCCCcceEeecccC
Q 038350          158 LPHFFY--EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVR-LSW----AAMENI---AHNCPFLETLSLVECY  224 (472)
Q Consensus       158 lp~~~~--~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~-~~~----~~l~~l---~~~cp~Le~L~l~~c~  224 (472)
                      +|..+.  .+. +|++|+|++|.+.   |..+.++++|++|+|+++. +++    ..+..+   +..+|+|+.|++.+|.
T Consensus       481 iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            788775  677 9999999998654   5567899999999999997 765    233332   2456799999999886


Q ss_pred             CceeEEE---eeCCCCeeEEEEeeccCC-ceeEEEeCCCeeEEEEeeeec---eEeecCCCc-eeEEEEEEeecccccCc
Q 038350          225 RIFKVEI---TLRTLGLRKLIVRHCQSL-SLGIELWLPRLQYFEYAGKMV---PFDMRGMDD-LEVVVLDYRLDTRYSYN  296 (472)
Q Consensus       225 ~~~~l~i---~~~~~~L~~L~l~~c~~~-~~~~~i~~p~L~~L~l~~~~~---~~~~~~~~~-L~~l~l~~~~~~~~~~~  296 (472)
                      -. .+.-   ...+++|+.|.++++... ++ .....++|+.|.+++...   +-.+.++++ |+.+++..+.-.     
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-----  632 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-----  632 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-----
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-----
Confidence            33 3322   235679999999998742 22 112467899999877432   123556777 888887754321     


Q ss_pred             hhhHHhhcccCC--CCcEEEEecccccccccccccccCCC--cccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEE
Q 038350          297 GDDIESLFNPFS--DARILQVSTSALKIFPTECLLCGRQL--FQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAI  372 (472)
Q Consensus       297 ~~~~~~ll~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i  372 (472)
                        .++..+..++  +|+.|+++.+.+....  ...+ ..+  ....+|+.|.+..+.-..   .-..++..+++|+.|++
T Consensus       633 --~lp~~~~~~~~~~L~~L~Ls~N~l~g~i--p~l~-~~l~~~~~~~L~~L~Ls~N~L~~---lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          633 --YIPNIFNAKSVYVMGSVDFSYNKIGSEG--RNIS-CSMDDYKGINASTVTLSYNEIQK---FPTELFATGSPISTIIL  704 (876)
T ss_dssp             --SCCSCCCTTCSSCEEEEECCSSCTTTTS--SSCS-SCTTTCCCCCEEEEECCSSCCCS---CCHHHHHTTCCCSEEEC
T ss_pred             --cCchhhhccccCCCCEEECcCCcCCCcc--ccch-hhhccccCCCcCEEEccCCcCCc---cCHHHHccCCCCCEEEC
Confidence              1223333443  4899999887654211  0011 111  234478888887542111   11234568899999999


Q ss_pred             EeCccc
Q 038350          373 STGAIM  378 (472)
Q Consensus       373 ~~~~~~  378 (472)
                      +.+...
T Consensus       705 s~N~L~  710 (876)
T 4ecn_A          705 SNNLMT  710 (876)
T ss_dssp             CSCCCS
T ss_pred             CCCcCC
Confidence            887543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.70  E-value=3.2e-09  Score=102.30  Aligned_cols=64  Identities=16%  Similarity=0.125  Sum_probs=32.6

Q ss_pred             hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+..+++|++|+++.+.+....     + ..+..+.+|+.|.+..+.    ...++.-+..+|+|+.|+++.+.
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~----l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVD-----N-GSLANTPHLRELHLNNNK----LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEEC-----T-TTGGGSTTCCEEECCSSC----CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCcCceeC-----h-hhccCCCCCCEEECCCCc----CccCChhhccCCCcCEEECCCCc
Confidence            3455666666666655443211     1 233445566666665431    11222334566666666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.69  E-value=6.5e-09  Score=104.81  Aligned_cols=116  Identities=14%  Similarity=0.056  Sum_probs=65.7

Q ss_pred             cccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEE
Q 038350          162 FYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL  241 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L  241 (472)
                      +..+. +|++|+|+++.+..-.+..+++|++|+|+++.+++-  .  +.++++|+.|++.++. +..+. ...+++|+.|
T Consensus        60 l~~l~-~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~-l~~l~-~~~l~~L~~L  132 (457)
T 3bz5_A           60 IEKLT-GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNK-LTKLD-VSQNPLLTYL  132 (457)
T ss_dssp             GGGCT-TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSC-CSCCC-CTTCTTCCEE
T ss_pred             hcccC-CCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCc-CCeec-CCCCCcCCEE
Confidence            44555 777777777766543466777777777777766632  1  5567777777777663 23333 2334566777


Q ss_pred             EEeeccCCceeEEE-eCCCeeEEEEeee--eceEeecCCCceeEEEEE
Q 038350          242 IVRHCQSLSLGIEL-WLPRLQYFEYAGK--MVPFDMRGMDDLEVVVLD  286 (472)
Q Consensus       242 ~l~~c~~~~~~~~i-~~p~L~~L~l~~~--~~~~~~~~~~~L~~l~l~  286 (472)
                      .++++..  ..+.+ ..++|++|.+.+.  ...+.+..+++|+.+++.
T Consensus       133 ~l~~N~l--~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          133 NCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS  178 (457)
T ss_dssp             ECTTSCC--SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred             ECCCCcc--ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence            6666653  11111 3455666665543  112334455556555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.69  E-value=4.9e-09  Score=111.22  Aligned_cols=68  Identities=21%  Similarity=0.217  Sum_probs=32.5

Q ss_pred             hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc-hhHHH----HHHHHhcCCCcceEEEEeCc
Q 038350          303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER-FELAA----IICLLISSPNITTLAISTGA  376 (472)
Q Consensus       303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~----l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+..+++|+.|+++.+.+..+.     + ..+..+.+|+.|++..+.-. .....    ....+..+++|+.|+++.+.
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~i~-----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          475 PFQPLRNLTILDLSNNNIANIN-----D-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC-----T-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             ccccCCCCCEEECCCCCCCcCC-----h-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence            3455666666666665443221     1 22344566666666543110 00000    01125666777777766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.68  E-value=2.2e-09  Score=100.65  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=60.0

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-  230 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-  230 (472)
                      ...+|..+.  . +|++|+|+++.+.   +..+.++++|++|+|+++.+..- ....+.++++|+.|++.++.- ..+. 
T Consensus        19 l~~ip~~l~--~-~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~   93 (276)
T 2z62_A           19 FYKIPDNLP--F-STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLAL   93 (276)
T ss_dssp             CSSCCSSSC--T-TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECT
T ss_pred             ccccCCCCC--C-CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc-CccCh
Confidence            445666542  3 7999999988665   34678999999999998877621 112367789999999998752 2222 


Q ss_pred             -EeeCCCCeeEEEEeecc
Q 038350          231 -ITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       231 -i~~~~~~L~~L~l~~c~  247 (472)
                       ....+++|+.|.+.++.
T Consensus        94 ~~~~~l~~L~~L~l~~n~  111 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETN  111 (276)
T ss_dssp             TTTTTCTTCCEEECTTSC
T ss_pred             hhhcCCccccEEECCCCC
Confidence             12234577777777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=9e-09  Score=111.15  Aligned_cols=102  Identities=17%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeee-ec----CC-------CCCCcccccEEEeee
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG-LG----LC-------NFVNFIQLTSLALTR  197 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~-l~----~~-------~~~~~~~L~~L~L~~  197 (472)
                      ++++.|.+....            ....+|..+..+. +|++|+|+++. +.    |.       .+..+++|++|+|++
T Consensus       491 ~~L~~L~Ls~N~------------l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          491 KDLTDVELYNCP------------NMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TTCCEEEEESCT------------TCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             CCCCEEECcCCC------------CCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            678888876321            2335676676677 88888888775 43    21       334556888888887


Q ss_pred             EEeChHHHHH--HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350          198 VRLSWAAMEN--IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       198 ~~~~~~~l~~--l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  247 (472)
                      +.+.  .+..  .+.++++|+.|++.++.- ..+.....+++|+.|.+++|.
T Consensus       558 N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          558 NNLE--EFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             SCCC--BCCCHHHHTTCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCSSC
T ss_pred             CcCC--ccCChhhhhcCCCCCEEECCCCCc-ccchhhcCCCcceEEECcCCc
Confidence            7776  3333  466778888888877642 233222334566666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.66  E-value=4.8e-09  Score=98.77  Aligned_cols=225  Identities=15%  Similarity=0.101  Sum_probs=124.9

Q ss_pred             EEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--EeeCCCCeeEEEEeecc
Q 038350          170 RVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--ITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       170 ~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~  247 (472)
                      +.++..+..+..-+..-.++|++|+|+++.+++-. ...+..+++|+.|++.++. +..+.  ....+++|+.|.++++.
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence            34555555554322234578999999998776211 1236789999999999874 33332  12335799999999885


Q ss_pred             CCceeE----EEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350          248 SLSLGI----ELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA  319 (472)
Q Consensus       248 ~~~~~~----~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~  319 (472)
                      . ...+    ....++|++|.+++...    +-.+.++++|+.+++.......      .....+..+++|++|+++++.
T Consensus        92 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           92 Q-LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------LPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             T-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC
T ss_pred             C-ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------cCHhHhccCCCccEEECCCCc
Confidence            1 1221    12357888888876422    1224566777777665432111      111335567777777777665


Q ss_pred             ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccc
Q 038350          320 LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN  399 (472)
Q Consensus       320 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~  399 (472)
                      +..+..      ..+..+.+|+.|.+..+.-..   ..+..+..+++|+.|++..+.....+               ...
T Consensus       165 l~~~~~------~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~  220 (285)
T 1ozn_A          165 ISSVPE------RAFRGLHSLDRLLLHQNRVAH---VHPHAFRDLGRLMTLYLFANNLSALP---------------TEA  220 (285)
T ss_dssp             CCEECT------TTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSCCC---------------HHH
T ss_pred             ccccCH------HHhcCccccCEEECCCCcccc---cCHhHccCcccccEeeCCCCcCCcCC---------------HHH
Confidence            442211      234456677777776432111   11233566777777777766322111               000


Q ss_pred             cccccCccEEEEEe--eecChhhHHHHHHH
Q 038350          400 GSILDHLECVQFEG--FTGKICEIDLVKFL  427 (472)
Q Consensus       400 ~~~~~~L~~v~i~~--f~g~~~e~~~~~~l  427 (472)
                      ...+++|+.+.+.+  +.+......+..++
T Consensus       221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             cccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            11446777777765  44444444454443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.66  E-value=2.8e-08  Score=102.95  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=43.1

Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAI  377 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~  377 (472)
                      ..+++|++|+++++.+..     ..| ..+..+.+|+.|.+..+.- .....++..+..+++|+.|+++.+..
T Consensus       350 ~~l~~L~~L~l~~n~l~~-----~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTD-----SVF-QGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             SSCCCCCEEECCSSCCCT-----TTT-TTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCceEEECCCCcccc-----chh-hhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcC
Confidence            456777777777665442     123 4456678888888875421 12235566788899999999987753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.65  E-value=4.2e-08  Score=101.65  Aligned_cols=40  Identities=18%  Similarity=0.191  Sum_probs=18.6

Q ss_pred             cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350          402 ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLI  443 (472)
Q Consensus       402 ~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~  443 (472)
                      .+++|+.+.+.+-.-+  .+.-+...+.+.++|+.+.++...
T Consensus       375 ~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          375 TLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             SCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             ccCCCCEEECCCCCcC--CcccchhhhcCCCCCCEEECCCCc
Confidence            4456666666542111  111122234556666666665433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.65  E-value=1.7e-09  Score=104.26  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=107.2

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEe
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEIT  232 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~  232 (472)
                      ..+|..++  . +|++|+|+++.+.   +..+.++++|++|+|.++.++.- ....+.++++|+.|++.++. +..+...
T Consensus        46 ~~ip~~~~--~-~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~  120 (332)
T 2ft3_A           46 KAVPKEIS--P-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNH-LVEIPPN  120 (332)
T ss_dssp             SSCCSCCC--T-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSC-CCSCCSS
T ss_pred             cccCCCCC--C-CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCc-CCccCcc
Confidence            35565542  3 7888999887654   45678889999999988877621 12236678899999998774 2222211


Q ss_pred             eCCCCeeEEEEeeccCC-ce-eEEEeCCCeeEEEEeeeec------eEeecCCCceeEEEEEEeecccccC---------
Q 038350          233 LRTLGLRKLIVRHCQSL-SL-GIELWLPRLQYFEYAGKMV------PFDMRGMDDLEVVVLDYRLDTRYSY---------  295 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~~~-~~-~~~i~~p~L~~L~l~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~---------  295 (472)
                      . .++|++|.++++... .. ..-...++|++|.+.+...      +..+..+ +|+.+++....-.....         
T Consensus       121 ~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L  198 (332)
T 2ft3_A          121 L-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL  198 (332)
T ss_dssp             C-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCC
T ss_pred             c-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEE
Confidence            1 148888888877531 11 0112366788888766321      1112222 34444333211100000         


Q ss_pred             ------chhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350          296 ------NGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT  369 (472)
Q Consensus       296 ------~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~  369 (472)
                            -.......+..+++|++|+++++.+..+.     + ..+..+.+|+.|.+..+.-    ..++.-+..+|+|+.
T Consensus       199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----~-~~~~~l~~L~~L~L~~N~l----~~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----N-GSLSFLPTLRELHLDNNKL----SRVPAGLPDLKLLQV  268 (332)
T ss_dssp             BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----T-TGGGGCTTCCEEECCSSCC----CBCCTTGGGCTTCCE
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----h-hHhhCCCCCCEEECCCCcC----eecChhhhcCccCCE
Confidence                  00001123445566666666655443221     1 2234556667776654311    122333566777777


Q ss_pred             EEEEeCc
Q 038350          370 LAISTGA  376 (472)
Q Consensus       370 L~i~~~~  376 (472)
                      |+++.+.
T Consensus       269 L~l~~N~  275 (332)
T 2ft3_A          269 VYLHTNN  275 (332)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            7776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.64  E-value=5.3e-09  Score=109.07  Aligned_cols=98  Identities=21%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             ccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCC
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRT  235 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~  235 (472)
                      ..+|..++  . +|++|+|++|.+..-. ..+++|++|+|+++.++.  +..   ..++|+.|++.+|. +..+.-  ..
T Consensus        53 ~~lp~~l~--~-~L~~L~L~~N~l~~lp-~~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~l~~--~l  120 (622)
T 3g06_A           53 TTLPDCLP--A-HITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNP-LTHLPA--LP  120 (622)
T ss_dssp             SCCCSCCC--T-TCSEEEECSCCCSCCC-CCCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCC-CCCCCC--CC
T ss_pred             CccChhhC--C-CCcEEEecCCCCCCCC-CcCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCc-CCCCCC--CC
Confidence            35565443  3 7777777777665211 156777777777776651  111   56777777777663 222211  33


Q ss_pred             CCeeEEEEeeccCCceeEEEeCCCeeEEEEee
Q 038350          236 LGLRKLIVRHCQSLSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       236 ~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~  267 (472)
                      ++|+.|.++++..  ..+....++|++|.+++
T Consensus       121 ~~L~~L~L~~N~l--~~lp~~l~~L~~L~Ls~  150 (622)
T 3g06_A          121 SGLCKLWIFGNQL--TSLPVLPPGLQELSVSD  150 (622)
T ss_dssp             TTCCEEECCSSCC--SCCCCCCTTCCEEECCS
T ss_pred             CCcCEEECCCCCC--CcCCCCCCCCCEEECcC
Confidence            4666666666642  22222346666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.64  E-value=9.6e-10  Score=108.41  Aligned_cols=99  Identities=12%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             ecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCC--cccCCceeEEEecccCc
Q 038350          274 MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQL--FQFWQLEHLTLNTGLER  351 (472)
Q Consensus       274 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~  351 (472)
                      +..+++|+.+++..+....  .....+...+..+++|++|+++++.+..... ...+ ..+  ..+.+|++|.+..+.-.
T Consensus       212 l~~~~~L~~L~Ls~n~l~~--~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~-~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTH--LGSSALAIALKSWPNLRELGLNDCLLSARGA-AAVV-DAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHH--HHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-HHHH-HHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhcCCCccEEECcCCCCCc--HHHHHHHHHHccCCCcCEEECCCCCCchhhH-HHHH-HHHhhccCCCeEEEECcCCcCC
Confidence            3445566665554322100  0012345566677777777777665432110 0011 112  22667777777654221


Q ss_pred             -hhHHHHHHHH-hcCCCcceEEEEeCc
Q 038350          352 -FELAAIICLL-ISSPNITTLAISTGA  376 (472)
Q Consensus       352 -~~~~~l~~ll-~~~p~L~~L~i~~~~  376 (472)
                       .....++..+ .++|+|+.|+++.+.
T Consensus       288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          288 LDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHHHHhcCCCceEEEccCCc
Confidence             1223355444 557777777776663

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.61  E-value=3.6e-09  Score=107.62  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=81.9

Q ss_pred             CCcEEEEEeeCCCCCCCCCCCCCCcccCC-cccccCCceEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHH
Q 038350          131 SVQELSLDFSDGDPVVPQPTLRNPQYVLP-HFFYEQGMCIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENI  208 (472)
Q Consensus       131 ~l~~L~l~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l  208 (472)
                      +++.|.+..             +....+| ..+..+. +|++|+|++|.+. ..++..+++|++|+|+++.+++      
T Consensus        35 ~L~~L~Ls~-------------n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------   94 (487)
T 3oja_A           35 NVKELDLSG-------------NPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------   94 (487)
T ss_dssp             GCCEEECCS-------------SCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------
T ss_pred             CccEEEeeC-------------CcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------
Confidence            677777753             2222344 3444556 9999999998775 2338899999999999988762      


Q ss_pred             HhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEE-EeCCCeeEEEEeeeec-eE---ee-cCCCcee
Q 038350          209 AHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV-PF---DM-RGMDDLE  281 (472)
Q Consensus       209 ~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~-~~---~~-~~~~~L~  281 (472)
                      +...|.|+.|++.+|.- ..+.. ..+++|+.|.+++|.. ...... ...++|++|++++... ..   .+ ..+++|+
T Consensus        95 l~~~~~L~~L~L~~N~l-~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           95 LLVGPSIETLHAANNNI-SRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             EEECTTCCEEECCSSCC-CCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCCCCCcCEEECcCCcC-CCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence            22458899999988753 22222 2345777887777764 111111 2356777777765321 11   12 2456666


Q ss_pred             EEEEEE
Q 038350          282 VVVLDY  287 (472)
Q Consensus       282 ~l~l~~  287 (472)
                      .++++.
T Consensus       173 ~L~Ls~  178 (487)
T 3oja_A          173 HLNLQY  178 (487)
T ss_dssp             EEECTT
T ss_pred             EEecCC
Confidence            666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.61  E-value=7.5e-09  Score=104.33  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=103.9

Q ss_pred             ccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350          161 FFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR  239 (472)
Q Consensus       161 ~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~  239 (472)
                      .+..+. +|++|+++++.+.. +++..+++|++|+|+++.+++-  .  +..+++|+.|++.+|. +..+. ...+++|+
T Consensus        37 ~~~~l~-~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~  109 (457)
T 3bz5_A           37 SEEQLA-TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLT  109 (457)
T ss_dssp             EHHHHT-TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCC
T ss_pred             ChhHcC-CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCC-Cceee-cCCCCcCC
Confidence            344556 89999999987763 4678999999999999988742  2  7789999999999886 44444 33467999


Q ss_pred             EEEEeeccCCceeEE-EeCCCeeEEEEeeee-ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEec
Q 038350          240 KLIVRHCQSLSLGIE-LWLPRLQYFEYAGKM-VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVST  317 (472)
Q Consensus       240 ~L~l~~c~~~~~~~~-i~~p~L~~L~l~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~  317 (472)
                      .|.++++..  ..+. -..++|++|.+++.. ..+.+.++++|+.+++..+.....      +  -+..+++|+.|+++.
T Consensus       110 ~L~L~~N~l--~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~------~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          110 YLNCDTNKL--TKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITK------L--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             EEECCSSCC--SCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCC------C--CCTTCTTCCEEECCS
T ss_pred             EEECCCCcC--CeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccc------c--ccccCCcCCEEECCC
Confidence            999999974  2222 246789999997742 345678899999988865421110      1  245677888888877


Q ss_pred             cccc
Q 038350          318 SALK  321 (472)
Q Consensus       318 ~~~~  321 (472)
                      +.+.
T Consensus       180 n~l~  183 (457)
T 3bz5_A          180 NKIT  183 (457)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            6544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.60  E-value=6e-09  Score=98.45  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=14.3

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEe
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRL  200 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~  200 (472)
                      ++++|+|+++.+.   +..+.++++|++|+|.++.+
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l   67 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL   67 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc
Confidence            4444444444332   22334444444444444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.60  E-value=4.4e-09  Score=111.58  Aligned_cols=102  Identities=21%  Similarity=0.140  Sum_probs=54.2

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcc-cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHF-FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM  205 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l  205 (472)
                      +.++.|.+..             +....+|.. +..+. +|++|+|+++.+.   +..+.++++|++|+|+++.+.....
T Consensus        73 ~~L~~L~L~~-------------n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A           73 PMLKVLNLQH-------------NELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             TTCCEEECCS-------------SCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             cCcCEEECCC-------------CccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence            6777777642             222344543 33445 7777777766543   3346677777777777665542111


Q ss_pred             HHHHhcCCCcceEeecccCCceeEEE----eeCCCCeeEEEEeecc
Q 038350          206 ENIAHNCPFLETLSLVECYRIFKVEI----TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       206 ~~l~~~cp~Le~L~l~~c~~~~~l~i----~~~~~~L~~L~l~~c~  247 (472)
                       ..+.++++|+.|++.++.- ..+..    ...+++|+.|.++++.
T Consensus       139 -~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          139 -GTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             -CSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             -hhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCc
Confidence             1234567777777766532 11110    0112466666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.58  E-value=3.2e-08  Score=95.16  Aligned_cols=201  Identities=10%  Similarity=0.030  Sum_probs=124.2

Q ss_pred             CcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCce-eE--EEeeCC
Q 038350          159 PHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIF-KV--EITLRT  235 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~-~l--~i~~~~  235 (472)
                      |..+..+. +|++|+|+++.+..-...-+++|++|++.++.+..- ....+.+++.|+.|++.++.-.. .+  .....+
T Consensus        93 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A           93 PGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             TTTTTTCT-TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             HHHhcCCC-CCCEEECCCCcCCccChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence            44455556 888888888766532212237888888888777621 22346789999999998875321 01  112235


Q ss_pred             CCeeEEEEeeccCCceeEE-EeCCCeeEEEEeeeec-e---EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCC
Q 038350          236 LGLRKLIVRHCQSLSLGIE-LWLPRLQYFEYAGKMV-P---FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDA  310 (472)
Q Consensus       236 ~~L~~L~l~~c~~~~~~~~-i~~p~L~~L~l~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L  310 (472)
                      ++|+.|.+.++..  ..+. ...++|++|.+++... .   -.+..+++|+.++++......      .....+..+++|
T Consensus       171 ~~L~~L~l~~n~l--~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L  242 (330)
T 1xku_A          171 KKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------VDNGSLANTPHL  242 (330)
T ss_dssp             TTCCEEECCSSCC--CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE------ECTTTGGGSTTC
T ss_pred             CCcCEEECCCCcc--ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce------eChhhccCCCCC
Confidence            7999999998864  1111 1127899999987422 2   246788999999887543211      112346778999


Q ss_pred             cEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHH--HHHhcCCCcceEEEEeCc
Q 038350          311 RILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAII--CLLISSPNITTLAISTGA  376 (472)
Q Consensus       311 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~--~ll~~~p~L~~L~i~~~~  376 (472)
                      +.|+++++.+..      .| ..+..+.+|+.|.+..+. .......+.  ......+.|+.|++...+
T Consensus       243 ~~L~L~~N~l~~------lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          243 RELHLNNNKLVK------VP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CEEECCSSCCSS------CC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CEEECCCCcCcc------CC-hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            999999886653      33 445678899999997542 111110000  011235788888887764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.56  E-value=3.4e-09  Score=101.49  Aligned_cols=187  Identities=17%  Similarity=0.152  Sum_probs=99.4

Q ss_pred             ccccCCceEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350          161 FFYEQGMCIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR  239 (472)
Q Consensus       161 ~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~  239 (472)
                      .+..+. +|++|+|+++.+. ...+..+++|++|+|+++.+++      +..++.|+.|++.++.- ..+.. ..+++|+
T Consensus        53 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l-~~~~~-~~~~~L~  123 (317)
T 3o53_A           53 DLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI-SRVSC-SRGQGKK  123 (317)
T ss_dssp             HHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCC-SEEEE-CCCSSCE
T ss_pred             HhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCcc-CCcCc-cccCCCC
Confidence            444455 8999999888664 2237888899999998887762      22458888888887753 33322 2245777


Q ss_pred             EEEEeeccC-CceeEE-EeCCCeeEEEEeeeec-eEe---e-cCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcE
Q 038350          240 KLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV-PFD---M-RGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARI  312 (472)
Q Consensus       240 ~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~-~~~---~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~  312 (472)
                      .|.++++.. ...... ...++|++|++++... .+.   + ..+++|+.++++...-....        -...+++|++
T Consensus       124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~l~~L~~  195 (317)
T 3o53_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVVFAKLKT  195 (317)
T ss_dssp             EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCCCTTCCE
T ss_pred             EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cccccccCCE
Confidence            777777753 111111 2346677777765321 111   1 24566666666533211110        0113556666


Q ss_pred             EEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          313 LQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       313 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      |+++.+.+..++       ..+..+.+|+.|.+..+.-    ..++..+..+++|+.|+++.+
T Consensus       196 L~Ls~N~l~~l~-------~~~~~l~~L~~L~L~~N~l----~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          196 LDLSSNKLAFMG-------PEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             EECCSSCCCEEC-------GGGGGGTTCSEEECTTSCC----CEECTTCCCCTTCCEEECTTC
T ss_pred             EECCCCcCCcch-------hhhcccCcccEEECcCCcc----cchhhHhhcCCCCCEEEccCC
Confidence            666555443221       1133445555555543211    112223445555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.55  E-value=1.3e-08  Score=99.37  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             eEEEEEEeeeeecCC-------CCCCcc-cccEEEeeeEEeCh---HHHHHHHhcC-CCcceEeecccCCceeEEE----
Q 038350          168 CIRVLNINSCGLGLC-------NFVNFI-QLTSLALTRVRLSW---AAMENIAHNC-PFLETLSLVECYRIFKVEI----  231 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~-------~~~~~~-~L~~L~L~~~~~~~---~~l~~l~~~c-p~Le~L~l~~c~~~~~l~i----  231 (472)
                      +|++|+|++|.+...       .+.+++ +|++|+|+++.+++   ..+..++..+ +.|++|++.+|. ++....    
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHH
Confidence            688898888877632       245677 89999998888774   3455555554 889999998876 222110    


Q ss_pred             --eeCC-CCeeEEEEeeccC
Q 038350          232 --TLRT-LGLRKLIVRHCQS  248 (472)
Q Consensus       232 --~~~~-~~L~~L~l~~c~~  248 (472)
                        -..+ ++|+.|.+++|..
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l  121 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDF  121 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHhCCCCccEEECcCCcC
Confidence              1111 4788888888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.55  E-value=3e-08  Score=94.50  Aligned_cols=119  Identities=16%  Similarity=0.061  Sum_probs=79.6

Q ss_pred             HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHH
Q 038350          129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMEN  207 (472)
Q Consensus       129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~  207 (472)
                      .+.++.|.+..             +....++. +..+. +|++|+|+++.+.. +.+..+++|++|+|+++.+++  +..
T Consensus        62 l~~L~~L~L~~-------------n~i~~~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~  124 (308)
T 1h6u_A           62 LNNLIGLELKD-------------NQITDLAP-LKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTP  124 (308)
T ss_dssp             CTTCCEEECCS-------------SCCCCCGG-GTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC--CGG
T ss_pred             cCCCCEEEccC-------------CcCCCChh-HccCC-CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC--chh
Confidence            36777777743             22334454 55566 99999999998763 457899999999999998873  222


Q ss_pred             HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEee
Q 038350          208 IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       208 l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~  267 (472)
                       +..+++|+.|++.+|. +..+.....+++|+.|.+++|.. .... ....++|++|.+++
T Consensus       125 -l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          125 -LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD  182 (308)
T ss_dssp             -GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             -hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence             7889999999999885 23222233456888888888863 1111 11344555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.50  E-value=2.2e-08  Score=91.65  Aligned_cols=172  Identities=10%  Similarity=0.042  Sum_probs=99.3

Q ss_pred             eEEEEEEeeeeec---CCCCCCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEE
Q 038350          168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKL  241 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L  241 (472)
                      +|++|+|+++.+.   +..+.++++|++|++.++. ++.- -...+.++++|+.|++.+|..+..+..  ...+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            7889999888665   3457888999999998875 5410 011356788899998887655655431  2345577777


Q ss_pred             EEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCcee---EEEEEEe-ecccccCchhhHHhhcccCCCCc-EEEEe
Q 038350          242 IVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLE---VVVLDYR-LDTRYSYNGDDIESLFNPFSDAR-ILQVS  316 (472)
Q Consensus       242 ~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~ll~~l~~L~-~L~l~  316 (472)
                      .+.++..  ..+.                .  +..+++|+   .+++... ....      .....+..+++|+ .|+++
T Consensus       111 ~l~~n~l--~~lp----------------~--~~~l~~L~~L~~L~l~~N~~l~~------i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          111 GIFNTGL--KMFP----------------D--LTKVYSTDIFFILEITDNPYMTS------IPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEECC--CSCC----------------C--CTTCCBCCSEEEEEEESCTTCCE------ECTTTTTTTBSSEEEEECC
T ss_pred             eCCCCCC--cccc----------------c--cccccccccccEEECCCCcchhh------cCcccccchhcceeEEEcC
Confidence            7777652  1110                0  22333333   4444322 1000      1113356778888 88887


Q ss_pred             cccccccccccccccCCCcccCCceeEEEecc--cCchhHHHHHHHHhcC-CCcceEEEEeCcc
Q 038350          317 TSALKIFPTECLLCGRQLFQFWQLEHLTLNTG--LERFELAAIICLLISS-PNITTLAISTGAI  377 (472)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~l~~ll~~~-p~L~~L~i~~~~~  377 (472)
                      ++.+..++       .......+|+.|.+..+  ....    -...+..+ ++|+.|+++...-
T Consensus       165 ~n~l~~i~-------~~~~~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          165 NNGFTSVQ-------GYAFNGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             SCCCCEEC-------TTTTTTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCC
T ss_pred             CCCCcccC-------HhhcCCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCcc
Confidence            77654332       11222257788877654  2111    11245667 8899998877643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.49  E-value=2.8e-08  Score=92.76  Aligned_cols=179  Identities=17%  Similarity=0.152  Sum_probs=99.6

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--  230 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--  230 (472)
                      ..+|..+.  . +|++|+|+++.+.   +..+.++++|++|+|.++.++. -...++..++.|+.|++.++. +..+.  
T Consensus        29 ~~ip~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~  103 (270)
T 2o6q_A           29 TAIPSNIP--A-DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIG  103 (270)
T ss_dssp             SSCCSCCC--T-TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTT
T ss_pred             CccCCCCC--C-CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHh
Confidence            34565442  3 7899999988765   3457889999999998887761 112335678999999998775 22222  


Q ss_pred             EeeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhccc
Q 038350          231 ITLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNP  306 (472)
Q Consensus       231 i~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~  306 (472)
                      ....+++|+.|.+.++..  ..+.    -..++|++|.+++.                    ....      .....+..
T Consensus       104 ~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n--------------------~l~~------~~~~~~~~  155 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYN--------------------ELQS------LPKGVFDK  155 (270)
T ss_dssp             TTTTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS--------------------CCCC------CCTTTTTT
T ss_pred             HcccccCCCEEECCCCcc--CeeCHHHhCcCcCCCEEECCCC--------------------cCCc------cCHhHccC
Confidence            112345777777777652  1110    12344555554432                    1110      01123455


Q ss_pred             CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          307 FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       307 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      +++|+.|+++.+.+..+..      ..+..+.+|+.|++..+.-..   .....+..+++|+.|+++.++
T Consensus       156 l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPE------GAFDKLTELKTLKLDNNQLKR---VPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSC
T ss_pred             CcccceeEecCCcCcEeCh------hHhccCCCcCEEECCCCcCCc---CCHHHhccccCCCEEEecCCC
Confidence            6677777776664432211      224455667777765431110   011234567777777776663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=5.7e-08  Score=83.42  Aligned_cols=91  Identities=10%  Similarity=0.124  Sum_probs=71.1

Q ss_pred             ccCCcccccCCceEEEEEEeeeeecCCC---CCCcccccEEEeeeE-EeChHHHHHHHhc---CCCcceEeecccCCcee
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLGLCN---FVNFIQLTSLALTRV-RLSWAAMENIAHN---CPFLETLSLVECYRIFK  228 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~~~~---~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---cp~Le~L~l~~c~~~~~  228 (472)
                      ..+|....... .|++|+|++|.+...+   +.+|++|++|+|.+| .++|.++..+...   |+.|+.|+|.+|..+++
T Consensus        51 ~~LP~~~~~~~-~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           51 NHLPTGPLDKY-KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGSCCCSTTCC-CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ccCCcccCCCc-eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            45665433445 8999999999877544   478999999999999 5899999997763   88999999999998765


Q ss_pred             EEE--eeCCCCeeEEEEeecc
Q 038350          229 VEI--TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       229 l~i--~~~~~~L~~L~l~~c~  247 (472)
                      --+  -..+++|++|.+++|.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            221  2346788888888887

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.48  E-value=8.4e-09  Score=98.52  Aligned_cols=82  Identities=13%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             cCCceEEEEEEeeeeec---CCCC--CCcccccEEEeeeEEeChH--HHHHHHhc-CCCcceEeecccCCceeEE--Eee
Q 038350          164 EQGMCIRVLNINSCGLG---LCNF--VNFIQLTSLALTRVRLSWA--AMENIAHN-CPFLETLSLVECYRIFKVE--ITL  233 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~---~~~~--~~~~~L~~L~L~~~~~~~~--~l~~l~~~-cp~Le~L~l~~c~~~~~l~--i~~  233 (472)
                      ... +|++|+|+++.+.   |..+  ..+++|++|+|+++.+++.  .+..+... +++|+.|++.++.- ..+.  ...
T Consensus        93 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~  170 (312)
T 1wwl_A           93 GIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVR  170 (312)
T ss_dssp             TTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCC
T ss_pred             CcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhc
Confidence            455 8999999999775   4444  7899999999999988732  33332211 38999999998753 2221  122


Q ss_pred             CCCCeeEEEEeecc
Q 038350          234 RTLGLRKLIVRHCQ  247 (472)
Q Consensus       234 ~~~~L~~L~l~~c~  247 (472)
                      .+++|+.|.++++.
T Consensus       171 ~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          171 VFPALSTLDLSDNP  184 (312)
T ss_dssp             CCSSCCEEECCSCT
T ss_pred             cCCCCCEEECCCCC
Confidence            34577777777775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.45  E-value=1.5e-08  Score=95.74  Aligned_cols=57  Identities=19%  Similarity=0.077  Sum_probs=33.0

Q ss_pred             cCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          164 EQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      .+. +|++|+|+++.+.. +.+..+++|++|+|+++.+++  +.. +..+++|+.|++.+|.
T Consensus        66 ~l~-~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           66 YLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             GCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC
T ss_pred             cCC-CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc
Confidence            344 66677666665542 125666666666666666652  222 5556666666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.41  E-value=2.1e-07  Score=82.41  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=46.9

Q ss_pred             cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCe
Q 038350          162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGL  238 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L  238 (472)
                      +..+. +|++|+++++.+.   +..+..+++|++|+|+++.+++..... +..+++|+.|++.+|..++.+.....+++|
T Consensus        84 l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L  161 (197)
T 4ezg_A           84 ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPEL  161 (197)
T ss_dssp             GTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSC
T ss_pred             hhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCC
Confidence            33444 6666666666554   344566666666666666665433333 456666666666666534443322334456


Q ss_pred             eEEEEeecc
Q 038350          239 RKLIVRHCQ  247 (472)
Q Consensus       239 ~~L~l~~c~  247 (472)
                      +.|.+++|.
T Consensus       162 ~~L~l~~n~  170 (197)
T 4ezg_A          162 KSLNIQFDG  170 (197)
T ss_dssp             CEEECTTBC
T ss_pred             CEEECCCCC
Confidence            666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.40  E-value=2.6e-08  Score=92.95  Aligned_cols=215  Identities=15%  Similarity=0.110  Sum_probs=124.0

Q ss_pred             CCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEE
Q 038350          165 QGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLI  242 (472)
Q Consensus       165 ~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~  242 (472)
                      |..+.+.+++++..+..-+..-.++|++|+|.++.++.-. ...+.++++|+.|++.++. +..+..  ...+++|+.|.
T Consensus        14 c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             EETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred             eCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence            4334667777777665311122367999999998776211 1236779999999998874 232221  12345777777


Q ss_pred             EeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccc
Q 038350          243 VRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKI  322 (472)
Q Consensus       243 l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~  322 (472)
                      +.++..  ..+.                .-.+.++++|+.+++.......      .....+..+++|++|+++.+.+..
T Consensus        92 l~~n~l--~~~~----------------~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           92 VTDNKL--QALP----------------IGVFDQLVNLAELRLDRNQLKS------LPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CCSSCC--CCCC----------------TTTTTTCSSCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcC--CcCC----------------HhHcccccCCCEEECCCCccCe------eCHHHhCcCcCCCEEECCCCcCCc
Confidence            777652  1111                0112334445555444221111      112346788999999999886653


Q ss_pred             cccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCccccccccccc
Q 038350          323 FPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSI  402 (472)
Q Consensus       323 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  402 (472)
                      +..      ..+..+.+|+.|.+..+.-..   .....+..+++|+.|+++.+.....+   +       ..+     ..
T Consensus       148 ~~~------~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~---~-------~~~-----~~  203 (270)
T 2o6q_A          148 LPK------GVFDKLTSLKELRLYNNQLKR---VPEGAFDKLTELKTLKLDNNQLKRVP---E-------GAF-----DS  203 (270)
T ss_dssp             CCT------TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCCSCCC---T-------TTT-----TT
T ss_pred             cCH------hHccCCcccceeEecCCcCcE---eChhHhccCCCcCEEECCCCcCCcCC---H-------HHh-----cc
Confidence            321      335668899999997542111   11124678999999999988543332   1       111     15


Q ss_pred             ccCccEEEEEe--eecChh-hHHHHHHHHh
Q 038350          403 LDHLECVQFEG--FTGKIC-EIDLVKFLLR  429 (472)
Q Consensus       403 ~~~L~~v~i~~--f~g~~~-e~~~~~~ll~  429 (472)
                      +++|+.+.+.+  +.+... ...+.+.+.+
T Consensus       204 l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~  233 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCTCNGIIYMAKWLKK  233 (270)
T ss_dssp             CTTCCEEECCSSCBCCSSSSSHHHHHHHHH
T ss_pred             ccCCCEEEecCCCeeCCCccHHHHHHHHHh
Confidence            57899999987  445443 2344444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.39  E-value=5.1e-08  Score=91.09  Aligned_cols=153  Identities=19%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCe
Q 038350          162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGL  238 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L  238 (472)
                      +..+. +|++|+|+++.+.. +.+..+++|++|+|.++.++. .....+.+++.|+.|++.+|.- ..+.-  ...+++|
T Consensus        59 l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           59 IQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNL  135 (272)
T ss_dssp             GGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTC
T ss_pred             cccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEECCCCcC-CccCHHHhccCCCC
Confidence            33444 67777777665542 345666677777776665551 1112245566677777666542 21110  1123455


Q ss_pred             eEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350          239 RKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS  318 (472)
Q Consensus       239 ~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~  318 (472)
                      +.|.+++|..  ..+                ..-.+..+++|+.+++..+.-..      .....+..+++|++|+++++
T Consensus       136 ~~L~L~~n~l--~~~----------------~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          136 TYLNLAHNQL--QSL----------------PKGVFDKLTNLTELDLSYNQLQS------LPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECCSSCC--CCC----------------CTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcc--Ccc----------------CHHHhccCccCCEEECCCCCcCc------cCHHHhcCCccCCEEECCCC
Confidence            5555555531  110                00112334444444443321111      11133456677777777766


Q ss_pred             cccccccccccccCCCcccCCceeEEEec
Q 038350          319 ALKIFPTECLLCGRQLFQFWQLEHLTLNT  347 (472)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  347 (472)
                      .+..+.     + ..+..+.+|+.|.+..
T Consensus       192 ~l~~~~-----~-~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          192 QLKSVP-----D-GVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCSCCC-----T-TTTTTCTTCCEEECCS
T ss_pred             cCCccC-----H-HHHhCCcCCCEEEccC
Confidence            544221     1 2344566777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.39  E-value=1.3e-07  Score=98.72  Aligned_cols=71  Identities=17%  Similarity=0.052  Sum_probs=41.2

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIA  209 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~  209 (472)
                      ++++.|.+...             ....+|.   ... +|++|+|++|.+..-. ..+++|++|+|+++.++.  +   -
T Consensus        61 ~~L~~L~L~~N-------------~l~~lp~---~l~-~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~N~l~~--l---~  117 (622)
T 3g06_A           61 AHITTLVIPDN-------------NLTSLPA---LPP-ELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTH--L---P  117 (622)
T ss_dssp             TTCSEEEECSC-------------CCSCCCC---CCT-TCCEEEECSCCCSCCC-CCCTTCCEEEECSCCCCC--C---C
T ss_pred             CCCcEEEecCC-------------CCCCCCC---cCC-CCCEEEcCCCcCCcCC-CCCCCCCEEECcCCcCCC--C---C
Confidence            57888887532             2234554   234 7888888887665211 166777777777766552  1   1


Q ss_pred             hcCCCcceEeeccc
Q 038350          210 HNCPFLETLSLVEC  223 (472)
Q Consensus       210 ~~cp~Le~L~l~~c  223 (472)
                      ...++|+.|++.++
T Consensus       118 ~~l~~L~~L~L~~N  131 (622)
T 3g06_A          118 ALPSGLCKLWIFGN  131 (622)
T ss_dssp             CCCTTCCEEECCSS
T ss_pred             CCCCCcCEEECCCC
Confidence            13455666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.37  E-value=2.1e-08  Score=96.55  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE--EEeeCCCCeeEEEEee
Q 038350          168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV--EITLRTLGLRKLIVRH  245 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~l~~  245 (472)
                      +++.++++++.+..-+..-.++|++|+|.++.+..-. ...+.++++|+.|++.+|. +..+  .....+++|+.|.+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC
Confidence            7889998888776321123479999999998776211 1236789999999999885 3333  1123467999999999


Q ss_pred             ccCCceeEEE-eCCCeeEEEEeeeec----eEeecCCCceeEEEEEEe
Q 038350          246 CQSLSLGIEL-WLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYR  288 (472)
Q Consensus       246 c~~~~~~~~i-~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~  288 (472)
                      +..  ..+.. ..++|++|.+++...    .-.+.++++|+.+++...
T Consensus       112 n~l--~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          112 NHL--VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             SCC--CSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred             CcC--CccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence            864  11110 127999999987422    123677899999988754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.35  E-value=9.4e-08  Score=84.63  Aligned_cols=54  Identities=7%  Similarity=0.080  Sum_probs=34.7

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      +|++|+++++.+.. +++..+++|++|++.++.+.+  +. .+..+++|+.|++.+|.
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~   99 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKD   99 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTT
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCc
Confidence            67777777776653 456677777777777765542  11 25566777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.35  E-value=3.9e-08  Score=91.88  Aligned_cols=172  Identities=13%  Similarity=0.084  Sum_probs=103.3

Q ss_pred             eEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEe
Q 038350          168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVR  244 (472)
Q Consensus       168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~  244 (472)
                      +|++|.+.++.+. .+++..+++|++|+|+++.+.+  +. .+..+++|+.|++.+|. +..+.-  ...+++|+.|.+.
T Consensus        42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECC
Confidence            7899999988776 3557889999999999888873  22 36789999999999874 232221  1234567777776


Q ss_pred             eccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccc
Q 038350          245 HCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFP  324 (472)
Q Consensus       245 ~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~  324 (472)
                      +|..  ..+.                +-.+..+++|+.+++..+.-..      .....+..+++|++|+++.+.+..+.
T Consensus       118 ~n~l--~~~~----------------~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A          118 ENQL--QSLP----------------DGVFDKLTNLTYLNLAHNQLQS------LPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCC--CCCC----------------TTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcC--CccC----------------HHHhccCCCCCEEECCCCccCc------cCHHHhccCccCCEEECCCCCcCccC
Confidence            6642  1110                0112344445554444321111      11234567788888888877554321


Q ss_pred             cccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          325 TECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       325 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                           + ..+..+.+|+.|.+..+.-..   .....+..+++|+.|++..+.
T Consensus       174 -----~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          174 -----E-GVFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             -----T-TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSC
T ss_pred             -----H-HHhcCCccCCEEECCCCcCCc---cCHHHHhCCcCCCEEEccCCC
Confidence                 1 234566788888876432111   112346778888888887764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.33  E-value=6e-08  Score=90.73  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             cCCc-ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-E
Q 038350          157 VLPH-FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-I  231 (472)
Q Consensus       157 ~lp~-~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i  231 (472)
                      .++. .+..+. +|++|+|+++.+.   +..+.++++|++|+|+++.++.-. ...+.++++|+.|++.++.-..... .
T Consensus        42 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~  119 (276)
T 2z62_A           42 HLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFP  119 (276)
T ss_dssp             EECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCC
T ss_pred             ccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchh
Confidence            3444 444556 9999999998665   446889999999999998776221 1236789999999999875321111 1


Q ss_pred             eeCCCCeeEEEEeecc
Q 038350          232 TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       232 ~~~~~~L~~L~l~~c~  247 (472)
                      ...+++|+.|.++++.
T Consensus       120 ~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A          120 IGHLKTLKELNVAHNL  135 (276)
T ss_dssp             CTTCTTCCEEECCSSC
T ss_pred             cccCCCCCEEECcCCc
Confidence            2234577777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.33  E-value=6.7e-07  Score=81.60  Aligned_cols=151  Identities=10%  Similarity=0.085  Sum_probs=90.2

Q ss_pred             ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--EeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEE
Q 038350          188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--ITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEY  265 (472)
Q Consensus       188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l  265 (472)
                      ++|++|+|.++.++.- ....+.++++|+.|++.++..++.+.  ....+++|+.|.+.+|. .+..+.           
T Consensus        31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~-----------   97 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYID-----------   97 (239)
T ss_dssp             TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEEC-----------
T ss_pred             CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcC-----------
Confidence            4899999999877621 11236789999999999986555543  23445688888888743 222221           


Q ss_pred             eeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCc---EEEEecc-cccccccccccccCCCcccCCce
Q 038350          266 AGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR---ILQVSTS-ALKIFPTECLLCGRQLFQFWQLE  341 (472)
Q Consensus       266 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~  341 (472)
                           .-.+.++++|+.+++....-..       ++. +..+++|+   +|+++++ .+..+..      ..+..+.+|+
T Consensus        98 -----~~~f~~l~~L~~L~l~~n~l~~-------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~  158 (239)
T 2xwt_C           98 -----PDALKELPLLKFLGIFNTGLKM-------FPD-LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNET  158 (239)
T ss_dssp             -----TTSEECCTTCCEEEEEEECCCS-------CCC-CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSE
T ss_pred             -----HHHhCCCCCCCEEeCCCCCCcc-------ccc-cccccccccccEEECCCCcchhhcCc------ccccchhcce
Confidence                 1123344555555554332111       111 45666776   9999887 5553321      3355678888


Q ss_pred             -eEEEecccCchhHHHHH-HHHhcCCCcceEEEEeC
Q 038350          342 -HLTLNTGLERFELAAII-CLLISSPNITTLAISTG  375 (472)
Q Consensus       342 -~L~l~~~~~~~~~~~l~-~ll~~~p~L~~L~i~~~  375 (472)
                       .|.+..+.-.    .++ ..+.. ++|+.|++..+
T Consensus       159 ~~L~l~~n~l~----~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          159 LTLKLYNNGFT----SVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCSCCCC----EECTTTTTT-CEEEEEECTTC
T ss_pred             eEEEcCCCCCc----ccCHhhcCC-CCCCEEEcCCC
Confidence             8888643211    111 12344 89999999877

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.30  E-value=6.4e-08  Score=91.33  Aligned_cols=191  Identities=17%  Similarity=0.059  Sum_probs=120.7

Q ss_pred             eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350          168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  247 (472)
                      +++++++.++.+..-...-.++|+.|+|+++.++.-. ...+.+++.|+.|++.++. +..+.....+++|+.|.++++.
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred             CccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc
Confidence            7888888877665211122368899999888776211 1236678999999998875 4444444566789999998886


Q ss_pred             C-CceeEEEeCCCeeEEEEeeeec-e---EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccc
Q 038350          248 S-LSLGIELWLPRLQYFEYAGKMV-P---FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKI  322 (472)
Q Consensus       248 ~-~~~~~~i~~p~L~~L~l~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~  322 (472)
                      . .+.......++|++|.+++... .   -.+.++++|+.+++....-..      .....+..+++|+.|+++.+.+..
T Consensus        89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------LPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc------cChhhcccccCCCEEECCCCcCCc
Confidence            4 1222122467888888876422 1   235678888888776432211      122445678889999998876653


Q ss_pred             cccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          323 FPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       323 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ++.      ..+..+.+|+.|.+..+.    ...++.-+...++|+.|.+..++
T Consensus       163 l~~------~~~~~l~~L~~L~L~~N~----l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          163 LPA------GLLNGLENLDTLLLQENS----LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCT------TTTTTCTTCCEEECCSSC----CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cCH------HHhcCcCCCCEEECCCCc----CCccChhhcccccCCeEEeCCCC
Confidence            321      234557788888886432    11333334556788888887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.30  E-value=1.1e-08  Score=97.77  Aligned_cols=203  Identities=15%  Similarity=0.071  Sum_probs=100.7

Q ss_pred             cCCcccccCCceEEEEEEeeeeec----CCCCC-------CcccccEEEeeeEEeChHHHHHH-HhcCCCcceEeecccC
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLG----LCNFV-------NFIQLTSLALTRVRLSWAAMENI-AHNCPFLETLSLVECY  224 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~----~~~~~-------~~~~L~~L~L~~~~~~~~~l~~l-~~~cp~Le~L~l~~c~  224 (472)
                      .+|..+..   .|++|+|+++.+.    +..+.       ++++|++|+|+++.+++.....+ +..+++|+.|++.++.
T Consensus        56 ~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~  132 (312)
T 1wwl_A           56 ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS  132 (312)
T ss_dssp             CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred             ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence            44554432   3666666666553    11112       57888888888887763222222 2677888888888764


Q ss_pred             CceeEEEeeC-----CCCeeEEEEeeccC-Cce-eEEEeCCCeeEEEEeeeec--------eEeecCCCceeEEEEEEee
Q 038350          225 RIFKVEITLR-----TLGLRKLIVRHCQS-LSL-GIELWLPRLQYFEYAGKMV--------PFDMRGMDDLEVVVLDYRL  289 (472)
Q Consensus       225 ~~~~l~i~~~-----~~~L~~L~l~~c~~-~~~-~~~i~~p~L~~L~l~~~~~--------~~~~~~~~~L~~l~l~~~~  289 (472)
                      -.+.......     .++|+.|.++++.. ... ..--..++|++|++++...        .+.+..+++|+.++++...
T Consensus       133 l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            2211000011     15788888887763 111 1112456777777765421        1122566677776665332


Q ss_pred             cccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350          290 DTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT  369 (472)
Q Consensus       290 ~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~  369 (472)
                      -..   .+.....++..+++|++|+++.+.+....     |...+..+.+|+.|.+..+.-.    .++.-+.  ++|+.
T Consensus       213 l~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~Ls~N~l~----~ip~~~~--~~L~~  278 (312)
T 1wwl_A          213 MET---PSGVCSALAAARVQLQGLDLSHNSLRDAA-----GAPSCDWPSQLNSLNLSFTGLK----QVPKGLP--AKLSV  278 (312)
T ss_dssp             CCC---HHHHHHHHHHTTCCCSEEECTTSCCCSSC-----CCSCCCCCTTCCEEECTTSCCS----SCCSSCC--SEEEE
T ss_pred             Ccc---hHHHHHHHHhcCCCCCEEECCCCcCCccc-----chhhhhhcCCCCEEECCCCccC----hhhhhcc--CCceE
Confidence            110   01123344556677777777666543211     1011223456666666533111    1111111  56666


Q ss_pred             EEEEeCc
Q 038350          370 LAISTGA  376 (472)
Q Consensus       370 L~i~~~~  376 (472)
                      |+++.+.
T Consensus       279 L~Ls~N~  285 (312)
T 1wwl_A          279 LDLSYNR  285 (312)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            6666653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.27  E-value=8.3e-08  Score=99.85  Aligned_cols=101  Identities=16%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeE
Q 038350          162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRK  240 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~  240 (472)
                      +..+. +|++|+|++|.+.. +.+..+++|+.|+|+++.+.+  +. .+..+++|+.|+|.+|. +..+.-...+++|+.
T Consensus        61 l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  135 (605)
T 1m9s_A           61 IQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  135 (605)
T ss_dssp             GGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred             HccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence            44556 88888888876652 226778888888888877763  22 36678888888888775 222322233567777


Q ss_pred             EEEeeccCCceeEEEeCCCeeEEEEee
Q 038350          241 LIVRHCQSLSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       241 L~l~~c~~~~~~~~i~~p~L~~L~l~~  267 (472)
                      |.+++|...........++|+.|.+++
T Consensus       136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A          136 LYLGNNKITDITVLSRLTKLDTLSLED  162 (605)
T ss_dssp             EECCSSCCCCCGGGGSCTTCSEEECCS
T ss_pred             EECCCCccCCchhhcccCCCCEEECcC
Confidence            777777531000011344555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.23  E-value=5.2e-08  Score=92.86  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=24.6

Q ss_pred             eEEEEEEeeeeecC-------CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          168 CIRVLNINSCGLGL-------CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-------~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      +|++|+|+++.+..       ..+..+++|++|+|+++.+.. .....+.++++|+.|++.++.
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCT
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCC
Confidence            55555555554431       111335555555555554431 011123344555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.21  E-value=1.2e-07  Score=92.36  Aligned_cols=242  Identities=12%  Similarity=0.029  Sum_probs=141.9

Q ss_pred             CCcccccEEEeeeEEeCh---HHHHHHHhcCC-CcceEeecccCCceeEE---Eee---C-CCCeeEEEEeeccCCcee-
Q 038350          185 VNFIQLTSLALTRVRLSW---AAMENIAHNCP-FLETLSLVECYRIFKVE---ITL---R-TLGLRKLIVRHCQSLSLG-  252 (472)
Q Consensus       185 ~~~~~L~~L~L~~~~~~~---~~l~~l~~~cp-~Le~L~l~~c~~~~~l~---i~~---~-~~~L~~L~l~~c~~~~~~-  252 (472)
                      ...++|++|+|+++.+++   ..+...+.++| .|++|++.+|. ++...   +..   . .++|++|.+++|...... 
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            344559999999998874   34446677888 99999999985 33221   111   1 259999999999741111 


Q ss_pred             --E---EEeC-CCeeEEEEeeeec-eE---e----ecC-CCceeEEEEEEeecccccCchhhHHhhcccCC-CCcEEEEe
Q 038350          253 --I---ELWL-PRLQYFEYAGKMV-PF---D----MRG-MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS-DARILQVS  316 (472)
Q Consensus       253 --~---~i~~-p~L~~L~l~~~~~-~~---~----~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~-~L~~L~l~  316 (472)
                        +   .... ++|++|++++... ..   .    +.. ..+|+.++++.+.-..  .....+...+..++ +|++|+++
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--KSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--HHHHHHHHHHhcCCccccEeeec
Confidence              0   0112 7999999987432 11   1    223 3589998887542211  11234555666666 99999999


Q ss_pred             cccccccccccccccCCCccc-CCceeEEEeccc-CchhHHHHHHHHhc-CCCcceEEEEeCcccCCCCCCCCCCCCCcc
Q 038350          317 TSALKIFPTECLLCGRQLFQF-WQLEHLTLNTGL-ERFELAAIICLLIS-SPNITTLAISTGAIMHTPDFRPNYFPLSRG  393 (472)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~-~~~~~~~l~~ll~~-~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~  393 (472)
                      ++.+..... .... ..+..+ .+|+.|+++.+. .......+...+.. +++|+.|+++.+......          ..
T Consensus       176 ~n~l~~~~~-~~l~-~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----------~~  243 (362)
T 3goz_A          176 GNNLASKNC-AELA-KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS----------LE  243 (362)
T ss_dssp             TSCGGGSCH-HHHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC----------HH
T ss_pred             CCCCchhhH-HHHH-HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH----------HH
Confidence            886643221 0001 122334 589999998653 22334456776666 679999999988422110          00


Q ss_pred             ccccccc-ccccCccEEEEEeee---cChhhHHHHHHHHhcCccceEEEEeecc
Q 038350          394 EIWTTNG-SILDHLECVQFEGFT---GKICEIDLVKFLLRNSRSIKELNIKQLI  443 (472)
Q Consensus       394 ~~w~~~~-~~~~~L~~v~i~~f~---g~~~e~~~~~~ll~~~~~L~~l~i~~~~  443 (472)
                      .  .... ..+++|+.+.+.+-.   -+...+..+..-+.+.+.|+.+.++...
T Consensus       244 ~--l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          244 N--LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             H--HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             H--HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            0  0011 156789999998754   2223333333344455666666665444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.17  E-value=3.4e-07  Score=95.27  Aligned_cols=53  Identities=23%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             eEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +|++|.|++|.+. ++.+..+++|+.|+|+++.+.+  +. -+..||+|+.|+|.+|
T Consensus        88 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           88 NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--IN-GLVHLPQLESLYLGNN  141 (605)
T ss_dssp             TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CG-GGGGCTTCSEEECCSS
T ss_pred             CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Cc-cccCCCccCEEECCCC
Confidence            4444444444443 2234444444444444444431  11 1334444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.16  E-value=5.3e-07  Score=85.03  Aligned_cols=160  Identities=17%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC  246 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c  246 (472)
                      +|++|+++++.+.. +++..+++|++|+|+++.+++  +.. +..+++|+.|++.++. +..+.-...+++|+.|.+++|
T Consensus        47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred             cccEEEccCCCcccChhHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCC
Confidence            67788887776653 456778889999998887773  222 7788899999988775 333322334568888888888


Q ss_pred             cC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccc
Q 038350          247 QS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIF  323 (472)
Q Consensus       247 ~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~  323 (472)
                      .. .... ....++|+.|.+++... . -.+..+++|+.++++.+.-..       +.. +..+++|+.|+++.+.+..+
T Consensus       123 ~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-------~~~-l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          123 GISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-------IVP-LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCChh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-------chh-hcCCCccCEEECCCCcCCCC
Confidence            64 1111 12467888888876422 1 235677888888776442211       112 67788999999988766543


Q ss_pred             ccccccccCCCcccCCceeEEEecc
Q 038350          324 PTECLLCGRQLFQFWQLEHLTLNTG  348 (472)
Q Consensus       324 ~~~~~~~~~~l~~~~~L~~L~l~~~  348 (472)
                      +        .+..+.+|+.|++..+
T Consensus       194 ~--------~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          194 R--------ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             G--------GGTTCTTCSEEEEEEE
T ss_pred             h--------hhccCCCCCEEECcCC
Confidence            1        2456788888888754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.14  E-value=2.8e-07  Score=87.77  Aligned_cols=189  Identities=14%  Similarity=-0.015  Sum_probs=107.3

Q ss_pred             eEEEEEEeeeeec---CCCC--CCcccccEEEeeeEEeChH--HHH-HHHhcCCCcceEeecccCCceeE-EEeeCCCCe
Q 038350          168 CIRVLNINSCGLG---LCNF--VNFIQLTSLALTRVRLSWA--AME-NIAHNCPFLETLSLVECYRIFKV-EITLRTLGL  238 (472)
Q Consensus       168 ~L~~L~L~~~~l~---~~~~--~~~~~L~~L~L~~~~~~~~--~l~-~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L  238 (472)
                      +|++|+|+++.+.   |..+  ..+++|++|+|+++.+.+.  .+. .-+..+++|+.|++.+|.-.... .....+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            4666666666543   3334  6678888888888777631  111 12336788888888876532111 112235678


Q ss_pred             eEEEEeeccC-C---c--eeEEEeCCCeeEEEEeeeece---E----eecCCCceeEEEEEEeecccccCchhhHHhhcc
Q 038350          239 RKLIVRHCQS-L---S--LGIELWLPRLQYFEYAGKMVP---F----DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFN  305 (472)
Q Consensus       239 ~~L~l~~c~~-~---~--~~~~i~~p~L~~L~l~~~~~~---~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~  305 (472)
                      +.|.++++.. +   .  .......|+|++|.+++....   -    .+..+++|+.++++...-...      .+..+.
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------~p~~~~  245 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT------VNPSAP  245 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC------CCSCCS
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc------chhhHH
Confidence            8888887752 1   0  011124567888877664221   0    134567777777764322111      011122


Q ss_pred             c---CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          306 P---FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       306 ~---l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .   +++|++|+++.+.+..+      | ..+  +.+|+.|+++.+.-.    +++ .+..+|+|+.|+++.+.
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~~l------p-~~~--~~~L~~L~Ls~N~l~----~~~-~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLEQV------P-KGL--PAKLRVLDLSSNRLN----RAP-QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCCSC------C-SCC--CSCCSCEECCSCCCC----SCC-CTTSCCCCSCEECSSTT
T ss_pred             hccCcCcCCEEECCCCCCCch------h-hhh--cCCCCEEECCCCcCC----CCc-hhhhCCCccEEECcCCC
Confidence            3   37899999988866532      2 223  368899988754211    111 25778999999998774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.13  E-value=9.6e-07  Score=75.77  Aligned_cols=72  Identities=17%  Similarity=-0.000  Sum_probs=40.2

Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCC
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHT  380 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~  380 (472)
                      +..+++|++|+++.+.+..++.    + ..+..+.+|++|.+..+.-..........+..+|+|+.|++..+.....
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~----~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDIST----L-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGG----G-GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             HhhCCCCCEEeccCCccCcchh----H-HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            3446667777776665443211    1 1234456677777654311111112234678899999999998864433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.11  E-value=1.2e-06  Score=80.57  Aligned_cols=88  Identities=22%  Similarity=0.163  Sum_probs=56.7

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-  230 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-  230 (472)
                      ...+|..+.  . ++++|+|+++.+.   +..+.++++|++|+|+++.+..- ....+..+++|+.|++.++. +..+. 
T Consensus        26 l~~~p~~~~--~-~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~  100 (251)
T 3m19_A           26 LDSVPSGIP--A-DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPL  100 (251)
T ss_dssp             CSSCCSCCC--T-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT
T ss_pred             ccccCCCCC--C-CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccCh
Confidence            345665542  3 7899999988765   34578899999999998877631 12235678899999998765 22221 


Q ss_pred             -EeeCCCCeeEEEEeecc
Q 038350          231 -ITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       231 -i~~~~~~L~~L~l~~c~  247 (472)
                       ....+++|+.|.++++.
T Consensus       101 ~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             hHhcccCCCCEEEcCCCc
Confidence             11223466666665554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.09  E-value=1e-06  Score=85.41  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-  230 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-  230 (472)
                      ...+|..+.  . ++++|+|+++.+.   +..|.++++|++|+|+++.+...--...+.+++.|+++.+..+..+..+. 
T Consensus        21 Lt~iP~~l~--~-~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           21 VTEIPSDLP--R-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             CCSCCTTCC--T-TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCccCcCcC--C-CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            445676552  3 7999999998765   34588999999999998865311001235678888877766666665552 


Q ss_pred             -EeeCCCCeeEEEEeeccC
Q 038350          231 -ITLRTLGLRKLIVRHCQS  248 (472)
Q Consensus       231 -i~~~~~~L~~L~l~~c~~  248 (472)
                       ....+++|+.|.+.++..
T Consensus        98 ~~f~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTGI  116 (350)
T ss_dssp             TSBCCCTTCCEEEEEEECC
T ss_pred             hhhhhcccccccccccccc
Confidence             223456888888888763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=1.7e-06  Score=83.88  Aligned_cols=60  Identities=12%  Similarity=0.171  Sum_probs=38.0

Q ss_pred             CcccccEEEeeeEEeC--------hHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350          186 NFIQLTSLALTRVRLS--------WAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       186 ~~~~L~~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  247 (472)
                      .+++|+.|.+..+.+.        ..++..++..+|+|++|.|.+|.++.-..+.  .++|++|.+..|.
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~  204 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG  204 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC
Confidence            4566777766543221        1246788899999999999987433211122  3577777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.01  E-value=8e-07  Score=81.80  Aligned_cols=78  Identities=13%  Similarity=-0.053  Sum_probs=48.4

Q ss_pred             eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEee
Q 038350          168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRH  245 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~  245 (472)
                      +.+++++++..+..-...-.++|++|+|.++.+..-. ...+.++++|+.|++.++. +..+..  ...+++|+.|.+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCC
Confidence            5677777777665211122368999999998876211 1236688999999999874 222211  12345666666666


Q ss_pred             cc
Q 038350          246 CQ  247 (472)
Q Consensus       246 c~  247 (472)
                      +.
T Consensus        93 n~   94 (251)
T 3m19_A           93 NQ   94 (251)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.99  E-value=4.6e-06  Score=83.76  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=17.4

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeC
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLS  201 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~  201 (472)
                      +|++|+++++.+.. +.+.++++|++|+++++.++
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCc
Confidence            55555555554431 23455555555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.99  E-value=1.2e-06  Score=91.58  Aligned_cols=108  Identities=12%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP  381 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  381 (472)
                      ..+..+++|++|+++++.+..+     .| ..+..+.+|+.|.|+.+.-..   ..+..+..+++|+.|+|+.+.....+
T Consensus       488 ~~~~~l~~L~~L~Ls~N~L~~l-----~~-~~f~~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~~~  558 (635)
T 4g8a_A          488 DIFTELRNLTFLDLSQCQLEQL-----SP-TAFNSLSSLQVLNMSHNNFFS---LDTFPYKCLNSLQVLDYSLNHIMTSK  558 (635)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECTTSCCCB---CCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhhhccccCEEECCCCccCCc-----Ch-HHHcCCCCCCEEECCCCcCCC---CChhHHhCCCCCCEEECCCCcCCCCC
Confidence            4566778888888887765532     22 445667788888886432110   11224677888888888877533221


Q ss_pred             CCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHhcCc
Q 038350          382 DFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLRNSR  432 (472)
Q Consensus       382 ~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~~~  432 (472)
                                +..+.  .  ..++|+.+.+.|  |.++++..+|..++-++..
T Consensus       559 ----------~~~l~--~--l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~  597 (635)
T 4g8a_A          559 ----------KQELQ--H--FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  597 (635)
T ss_dssp             ----------SSCTT--C--CCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred             ----------HHHHH--h--hhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence                      00110  0  225799999876  7777777778777655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.99  E-value=9.5e-07  Score=75.82  Aligned_cols=88  Identities=20%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEe
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EIT  232 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~  232 (472)
                      .+|..+..+. +|++|+|++|.+.. ..+..+++|++|+|+++.+.+. +...+..+|+|+.|++.+|. +..+   ...
T Consensus        40 ~i~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l  116 (168)
T 2ell_A           40 KIEGLTAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPL  116 (168)
T ss_dssp             BCSSCCGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGG
T ss_pred             hHHHHHHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHH
Confidence            5666655666 99999999987763 5568899999999999988732 55667779999999999884 3332   122


Q ss_pred             eCCCCeeEEEEeecc
Q 038350          233 LRTLGLRKLIVRHCQ  247 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~  247 (472)
                      ..+++|+.|.+++|.
T Consensus       117 ~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          117 KKLECLKSLDLFNCE  131 (168)
T ss_dssp             SSCSCCCEEECCSSG
T ss_pred             hcCCCCCEEEeeCCc
Confidence            335577777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.92  E-value=8.9e-07  Score=74.31  Aligned_cols=14  Identities=21%  Similarity=0.159  Sum_probs=9.3

Q ss_pred             HHHhcCCCcceEEE
Q 038350          359 CLLISSPNITTLAI  372 (472)
Q Consensus       359 ~ll~~~p~L~~L~i  372 (472)
                      ..+..+|+|+.|++
T Consensus       134 ~~~~~l~~L~~L~l  147 (149)
T 2je0_A          134 NVFKLLPQLTYLDG  147 (149)
T ss_dssp             HHHHHCTTCCEETT
T ss_pred             HHHHHCCCcccccC
Confidence            35667777777754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.89  E-value=2.8e-06  Score=78.80  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=34.9

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      +|++|+++++.+.. +++..+++|++|+|+++.+++  +.. +..+++|+.|++.++.
T Consensus        42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSC
T ss_pred             cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCc
Confidence            67777777665542 345667777777777776662  112 6667777777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.89  E-value=3.3e-06  Score=87.01  Aligned_cols=182  Identities=14%  Similarity=0.027  Sum_probs=114.8

Q ss_pred             HHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHH
Q 038350          128 LEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMEN  207 (472)
Q Consensus       128 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~  207 (472)
                      ...+++.|.+..             +....+|..++  . +|++|+|+++.+..-. ..+++|++|+|+++.++.  +..
T Consensus        57 ~~~~L~~L~Ls~-------------n~L~~lp~~l~--~-~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~--ip~  117 (571)
T 3cvr_A           57 LINQFSELQLNR-------------LNLSSLPDNLP--P-QITVLEITQNALISLP-ELPASLEYLDACDNRLST--LPE  117 (571)
T ss_dssp             HHTTCSEEECCS-------------SCCSCCCSCCC--T-TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC--CCC
T ss_pred             ccCCccEEEeCC-------------CCCCccCHhHc--C-CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC--cch
Confidence            346888888753             22334777653  4 8999999999887422 668999999999998873  333


Q ss_pred             HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeec-eEe-ecCCCceeEEEE
Q 038350          208 IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMV-PFD-MRGMDDLEVVVL  285 (472)
Q Consensus       208 l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~-~~~-~~~~~~L~~l~l  285 (472)
                       +  +.+|+.|++.++. +..+.-  .+++|+.|.++++..  ..+....++|++|.+++... .+. +.  ++|+.+++
T Consensus       118 -l--~~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l--~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~L  187 (571)
T 3cvr_A          118 -L--PASLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQL--TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDV  187 (571)
T ss_dssp             -C--CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEEC
T ss_pred             -h--hcCCCEEECCCCc-CCCCCC--cCccccEEeCCCCcc--CcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEEC
Confidence             2  2399999999875 333322  467999999999874  22222567999999987421 111 22  77888887


Q ss_pred             EEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecc
Q 038350          286 DYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG  348 (472)
Q Consensus       286 ~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  348 (472)
                      +...-.....   ....+....+.++.|+++++.+..+      | ..+..+.+|+.|++..+
T Consensus       188 s~N~L~~lp~---~~~~L~~~~~~L~~L~Ls~N~l~~l------p-~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          188 STNLLESLPA---VPVRNHHSEETEIFFRCRENRITHI------P-ENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CSSCCSSCCC---CC--------CCEEEECCSSCCCCC------C-GGGGGSCTTEEEECCSS
T ss_pred             cCCCCCchhh---HHHhhhcccccceEEecCCCcceec------C-HHHhcCCCCCEEEeeCC
Confidence            7542211110   0001111222339999988876543      3 34455888999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.88  E-value=3.6e-06  Score=84.57  Aligned_cols=196  Identities=15%  Similarity=0.048  Sum_probs=121.9

Q ss_pred             CCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHh
Q 038350          131 SVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAH  210 (472)
Q Consensus       131 ~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~  210 (472)
                      .++.|.+..             +....+| .+..+. +|++|+++++.+..-. ...++|++|+++++.+.  .+.. +.
T Consensus       174 ~L~~L~L~~-------------n~l~~l~-~~~~l~-~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~n~l~--~lp~-~~  234 (454)
T 1jl5_A          174 SLEFIAAGN-------------NQLEELP-ELQNLP-FLTAIYADNNSLKKLP-DLPLSLESIVAGNNILE--ELPE-LQ  234 (454)
T ss_dssp             TCCEEECCS-------------SCCSSCC-CCTTCT-TCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCS--SCCC-CT
T ss_pred             cccEEECcC-------------CcCCcCc-cccCCC-CCCEEECCCCcCCcCC-CCcCcccEEECcCCcCC--cccc-cC
Confidence            677777642             2223355 355566 9999999998776311 12368999999988776  2333 66


Q ss_pred             cCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeec
Q 038350          211 NCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLD  290 (472)
Q Consensus       211 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~  290 (472)
                      .+++|+.|++.++.- ..+  +...++|+.|.+++|..  ..+....++|++|++++....-.-.-.++|+.++++...-
T Consensus       235 ~l~~L~~L~l~~N~l-~~l--~~~~~~L~~L~l~~N~l--~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          235 NLPFLTTIYADNNLL-KTL--PDLPPSLEALNVRDNYL--TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             TCTTCCEEECCSSCC-SSC--CSCCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcC-Ccc--cccccccCEEECCCCcc--cccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence            899999999998752 222  12235999999998864  2222234789999987743211001135688777663321


Q ss_pred             ccccCchhhHHhhcccC-CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350          291 TRYSYNGDDIESLFNPF-SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT  369 (472)
Q Consensus       291 ~~~~~~~~~~~~ll~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~  369 (472)
                      .          . +..+ ++|++|+++.+.+..+      | .   .+.+|+.|++..+.-.    .++.   .+++|+.
T Consensus       310 ~----------~-i~~~~~~L~~L~Ls~N~l~~l------p-~---~~~~L~~L~L~~N~l~----~lp~---~l~~L~~  361 (454)
T 1jl5_A          310 R----------S-LCDLPPSLEELNVSNNKLIEL------P-A---LPPRLERLIASFNHLA----EVPE---LPQNLKQ  361 (454)
T ss_dssp             S----------E-ECCCCTTCCEEECCSSCCSCC------C-C---CCTTCCEEECCSSCCS----CCCC---CCTTCCE
T ss_pred             C----------c-ccCCcCcCCEEECCCCccccc------c-c---cCCcCCEEECCCCccc----cccc---hhhhccE
Confidence            1          1 1233 5899999988765432      2 1   2578899998754211    1222   4789999


Q ss_pred             EEEEeCccc
Q 038350          370 LAISTGAIM  378 (472)
Q Consensus       370 L~i~~~~~~  378 (472)
                      |+++.+...
T Consensus       362 L~L~~N~l~  370 (454)
T 1jl5_A          362 LHVEYNPLR  370 (454)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCCCC
Confidence            999887543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.84  E-value=1.1e-06  Score=85.90  Aligned_cols=75  Identities=16%  Similarity=0.038  Sum_probs=41.8

Q ss_pred             HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      +...+..+++|++|+|+.+.+..... ...+ ..+....+|+.|++..+. .......+...++.+|+|+.|+|+.+.
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~l~~~g~-~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTGLGDEGL-ELLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSSCHHHHH-HHHH-HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHhcCCCcCEEeCCCCCCCcHHH-HHHH-HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            33445566677777776665432110 0011 223344567777776542 222344566667788888888887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.83  E-value=9.3e-07  Score=74.21  Aligned_cols=88  Identities=26%  Similarity=0.316  Sum_probs=64.5

Q ss_pred             cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEe
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EIT  232 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~  232 (472)
                      .+|..+..+. +|++|++++|.+.. ..+..+++|++|+|+++.+++. +...+..+++|+.|++.+|. +..+   ...
T Consensus        33 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~  109 (149)
T 2je0_A           33 KLEGLTDEFE-ELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL  109 (149)
T ss_dssp             BCCSCCTTCT-TCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGG
T ss_pred             HHHHHHhhcC-CCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHH
Confidence            4666555666 89999999887763 5578899999999999988732 56667789999999999875 3332   222


Q ss_pred             eCCCCeeEEEEeecc
Q 038350          233 LRTLGLRKLIVRHCQ  247 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~  247 (472)
                      ..+++|+.|.+++|.
T Consensus       110 ~~l~~L~~L~l~~N~  124 (149)
T 2je0_A          110 KKLENLKSLDLFNCE  124 (149)
T ss_dssp             GGCTTCCEEECTTCG
T ss_pred             hhCCCCCEEeCcCCc
Confidence            345678888877775

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.80  E-value=2.1e-06  Score=78.77  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             CCCCchHHHHHHHhcCChhhHhhhhhhccccc----cccccccc
Q 038350            8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHC   47 (472)
Q Consensus         8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~   47 (472)
                      |+.||+||+.+|||||+.+|+++++.|||+||    |..+|+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~   48 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF   48 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            66899999999999999999999999999999    33457654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.79  E-value=2.4e-05  Score=81.65  Aligned_cols=202  Identities=17%  Similarity=0.203  Sum_probs=110.0

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH-HHHHhcCCCcceEeecccCCceeEEE
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM-ENIAHNCPFLETLSLVECYRIFKVEI  231 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l-~~l~~~cp~Le~L~l~~c~~~~~l~i  231 (472)
                      ..+|..+   +.++++|+|+++.+.   +..|.++++|++|+|+++.++.  + ...+.++++|++|+|.++. +..+..
T Consensus        44 ~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~-l~~l~~  117 (635)
T 4g8a_A           44 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNP-IQSLAL  117 (635)
T ss_dssp             SSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCC-CCEECG
T ss_pred             CccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCc-CCCCCH
Confidence            4455543   227899999988664   4568899999999999887761  1 1236778999999999875 444332


Q ss_pred             --eeCCCCeeEEEEeeccC-CceeEE-EeCCCeeEEEEeeeec-----eEeecCCCceeEEEEEEeecccccCchhhHHh
Q 038350          232 --TLRTLGLRKLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV-----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIES  302 (472)
Q Consensus       232 --~~~~~~L~~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  302 (472)
                        ...+++|++|.+.+|.. .+.... -..++|++|++++...     +-.+..+++|+.+++....-....  ...+..
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~  195 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRV  195 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC--GGGGHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc--cccccc
Confidence              23466888888888763 121111 2356777777765321     122345666666665532111100  001111


Q ss_pred             hcccCC-CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          303 LFNPFS-DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       303 ll~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                       +..++ ....+.++.+.+..+      + ........+..|.+..+.  .........+...+.++...+...
T Consensus       196 -L~~l~~~~~~~~ls~n~l~~i------~-~~~~~~~~~~~l~l~~n~--~~~~~~~~~~~~l~~l~~~~l~~~  259 (635)
T 4g8a_A          196 -LHQMPLLNLSLDLSLNPMNFI------Q-PGAFKEIRLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLVLG  259 (635)
T ss_dssp             -HHTCTTCCCEEECTTCCCCEE------C-TTTTTTCEEEEEEEESCC--SSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             -hhhhhhhhhhhhcccCccccc------C-cccccchhhhhhhhhccc--ccccccchhhcCCccccccccccc
Confidence             11111 223444444433221      1 112223344555554432  223455566788888887777554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=2.1e-06  Score=73.67  Aligned_cols=80  Identities=10%  Similarity=0.231  Sum_probs=58.0

Q ss_pred             CcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE---ee---CCCCeeEEEEeeccC----CceeEEE
Q 038350          186 NFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI---TL---RTLGLRKLIVRHCQS----LSLGIEL  255 (472)
Q Consensus       186 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i---~~---~~~~L~~L~l~~c~~----~~~~~~i  255 (472)
                      .-..|+.|+|++|.+++.++..+ ++|+.|+.|+|.+|..+++.-+   ..   .+++|++|++++|..    ++..+. 
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-  136 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-  136 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred             CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence            34579999999999999999885 7999999999999988775322   21   124799999999972    122221 


Q ss_pred             eCCCeeEEEEee
Q 038350          256 WLPRLQYFEYAG  267 (472)
Q Consensus       256 ~~p~L~~L~l~~  267 (472)
                      .+|+|++|.+++
T Consensus       137 ~~~~L~~L~L~~  148 (176)
T 3e4g_A          137 HFRNLKYLFLSD  148 (176)
T ss_dssp             GCTTCCEEEEES
T ss_pred             cCCCCCEEECCC
Confidence            356666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.79  E-value=6.6e-06  Score=76.20  Aligned_cols=95  Identities=12%  Similarity=-0.021  Sum_probs=61.0

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC  246 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c  246 (472)
                      .++.+.++++.+.. +.+..+++|++|++.++.+++  +. -+..+++|+.|++.++. +..+.-...+++|+.|.++++
T Consensus        20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCC
Confidence            34444444444432 235788999999999988872  22 36789999999999875 333221344678999999888


Q ss_pred             cC-CceeEEEeCCCeeEEEEeee
Q 038350          247 QS-LSLGIELWLPRLQYFEYAGK  268 (472)
Q Consensus       247 ~~-~~~~~~i~~p~L~~L~l~~~  268 (472)
                      .. ....+..  ++|++|.+++.
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N  116 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNN  116 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSS
T ss_pred             ccCCcCcccc--CcccEEEccCC
Confidence            64 1111111  67777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.77  E-value=4.3e-05  Score=78.64  Aligned_cols=171  Identities=18%  Similarity=0.103  Sum_probs=98.1

Q ss_pred             eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEee
Q 038350          168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRH  245 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~  245 (472)
                      +|++|+|+++.+.  |..+  +++|++|+|+++.++  .+.   ..+++|+.|++.++. +..+....  .+|+.|.+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~-l~~ip~l~--~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNR-LSTLPELP--ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCC-CCCcchhh--cCCCEEECCC
Confidence            6788888877665  2222  477888888877776  222   457888888888764 33332211  2788888887


Q ss_pred             ccC-CceeEEEeCCCeeEEEEeeeec-eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccc
Q 038350          246 CQS-LSLGIELWLPRLQYFEYAGKMV-PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIF  323 (472)
Q Consensus       246 c~~-~~~~~~i~~p~L~~L~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~  323 (472)
                      +.. .+..   ..++|+.|.+++... .+.- .+++|+.++++.+.-..       ++. +.  ++|+.|+++++.+..+
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~-------lp~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTF-------LPE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-------CCC-CC--TTCCEEECCSSCCSSC
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCC-------cch-hh--CCCCEEECcCCCCCch
Confidence            764 2222   567788888776422 1111 45677777766442211       111 22  6788888877765432


Q ss_pred             ccccccccCCCcccCCc-------eeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          324 PTECLLCGRQLFQFWQL-------EHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       324 ~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                            | . +..  +|       +.|.+..+.    ...++.-+..+++|+.|+|+.+.
T Consensus       196 ------p-~-~~~--~L~~~~~~L~~L~Ls~N~----l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          196 ------P-A-VPV--RNHHSEETEIFFRCRENR----ITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             ------C-C-CC----------CCEEEECCSSC----CCCCCGGGGGSCTTEEEECCSSS
T ss_pred             ------h-h-HHH--hhhcccccceEEecCCCc----ceecCHHHhcCCCCCEEEeeCCc
Confidence                  2 1 211  45       777775431    11334434457888888887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.72  E-value=3.2e-05  Score=74.72  Aligned_cols=212  Identities=13%  Similarity=0.080  Sum_probs=121.2

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeee-c---CCCCCCcccccEEEe-eeEEeChHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGL-G---LCNFVNFIQLTSLAL-TRVRLSWAA  204 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l-~---~~~~~~~~~L~~L~L-~~~~~~~~~  204 (472)
                      +++++|.+..             +....+|...|...++|++|+|+++.+ .   +..|.++++|+++.. ..+.+.. -
T Consensus        30 ~~l~~L~Ls~-------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l   95 (350)
T 4ay9_X           30 RNAIELRFVL-------------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-I   95 (350)
T ss_dssp             TTCSEEEEES-------------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-E
T ss_pred             CCCCEEEccC-------------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-c
Confidence            5788888763             344567776554333999999999854 2   345788888887554 4444441 0


Q ss_pred             HHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEEeeccCCceeEEEe-----CCCeeEEEEeeeec-eEe--ec
Q 038350          205 MENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIVRHCQSLSLGIELW-----LPRLQYFEYAGKMV-PFD--MR  275 (472)
Q Consensus       205 l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l~~c~~~~~~~~i~-----~p~L~~L~l~~~~~-~~~--~~  275 (472)
                      ....+.++++|+.|++.++.-...... .....++..|.+.++. .+..+...     ..+++.|.+++... .+.  ..
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f  174 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF  174 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred             CchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhc
Confidence            012367899999999998752211111 1123467778877765 33333221     23678888876422 221  12


Q ss_pred             CCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHH
Q 038350          276 GMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELA  355 (472)
Q Consensus       276 ~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  355 (472)
                      ...+|.++.+......  .   ......+..+++|+.|+++.+.+..++       .  ..|.+|++|.+..+..-.   
T Consensus       175 ~~~~L~~l~l~~~n~l--~---~i~~~~f~~l~~L~~LdLs~N~l~~lp-------~--~~~~~L~~L~~l~~~~l~---  237 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNL--E---ELPNDVFHGASGPVILDISRTRIHSLP-------S--YGLENLKKLRARSTYNLK---  237 (350)
T ss_dssp             TTEEEEEEECTTCTTC--C---CCCTTTTTTEECCSEEECTTSCCCCCC-------S--SSCTTCCEEECTTCTTCC---
T ss_pred             cccchhHHhhccCCcc--c---CCCHHHhccCcccchhhcCCCCcCccC-------h--hhhccchHhhhccCCCcC---
Confidence            3344555544321110  0   011245678899999999988765432       1  236777888754321111   


Q ss_pred             HHHHHHhcCCCcceEEEEe
Q 038350          356 AIICLLISSPNITTLAIST  374 (472)
Q Consensus       356 ~l~~ll~~~p~L~~L~i~~  374 (472)
                      .++. +..+++|+.+++..
T Consensus       238 ~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          238 KLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCC-TTTCCSCCEEECSC
T ss_pred             cCCC-chhCcChhhCcCCC
Confidence            2221 56778888888743

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.72  E-value=6.9e-05  Score=72.59  Aligned_cols=133  Identities=17%  Similarity=0.070  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHhhcCCCccEEEEEEEeCC-CcchHhHHHHHHHH-HHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCccc
Q 038350           85 KYFHFVDRAVCRLASEFLTKFSFRLYYSS-NIYRQNIDKWIEIV-LEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFF  162 (472)
Q Consensus        85 ~~~~~v~~~l~~~~~~~l~~l~l~~~~~~-~~~~~~i~~wl~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~  162 (472)
                      .+.+.+.+++.......|+.+.+....+. +.....+..+...+ .-++++.|.+.......   .+........++..+
T Consensus        92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~---~~is~~~~~~L~~ll  168 (362)
T 2ra8_A           92 EGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE---QEISWIEQVDLSPVL  168 (362)
T ss_dssp             TTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT---CCGGGCBCCBCHHHH
T ss_pred             cHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh---cccccccccCHHHHH
Confidence            33445555666444456777777644322 10123444444422 23799999874211000   000000011233444


Q ss_pred             ccCCceEEEEEEeeee-ecCCCCCCcccccEEEeeeEEeChHHHHHHHh-cCCCcceEeecc
Q 038350          163 YEQGMCIRVLNINSCG-LGLCNFVNFIQLTSLALTRVRLSWAAMENIAH-NCPFLETLSLVE  222 (472)
Q Consensus       163 ~~~~~~L~~L~L~~~~-l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~  222 (472)
                      -.++ +|++|.|.++. +..+.+ ..++|++|.|..+.++++.+..+.. .+|+|+.|.|..
T Consensus       169 ~~~P-~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          169 DAMP-LLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HTCT-TCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             hcCC-CCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            4456 99999998872 333333 4899999999999998888887664 699999999864

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.70  E-value=1.1e-05  Score=74.80  Aligned_cols=34  Identities=15%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             CCCCCCchHHHHHHHhcCChhhHh-hhhhhccccc
Q 038350            6 DPLSDFHDDLIIVIITFLPFIDAY-RLCMSKKKWY   39 (472)
Q Consensus         6 D~is~LPd~iL~~Ils~L~~~d~~-r~s~vSkrWr   39 (472)
                      ..+..||||||..||++||.++++ |++.|||+|+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr   83 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWK   83 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHH
Confidence            468899999999999999999999 9999999999

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.69  E-value=1.6e-06  Score=77.30  Aligned_cols=89  Identities=17%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE  230 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~  230 (472)
                      ....+|..+  .. +|++|+|+++.+.   +..+.++++|++|+|.++.++. .....+..+++|+.|++.++. +..+.
T Consensus        18 ~l~~~p~~~--~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~   92 (208)
T 2o6s_A           18 GRTSVPTGI--PA-QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLP   92 (208)
T ss_dssp             CCSSCCSCC--CT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred             CccCCCCCC--CC-CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccC
Confidence            344556544  23 7899999988775   2346789999999999887762 112335678999999998874 23221


Q ss_pred             E--eeCCCCeeEEEEeecc
Q 038350          231 I--TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       231 i--~~~~~~L~~L~l~~c~  247 (472)
                      -  ...+++|+.|.++++.
T Consensus        93 ~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HhHhcCccCCCEEEcCCCc
Confidence            1  1234677788777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.64  E-value=3.7e-05  Score=69.02  Aligned_cols=67  Identities=13%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ....+|..+.  . +|++|+|+++.+.   +..+.++++|++|+|+++.+..- ....+.++++|+.|+|.++.
T Consensus        22 ~l~~iP~~l~--~-~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           22 GLTEIPTNLP--E-TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             CCSSCCSSCC--T-TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSC
T ss_pred             CcCcCCCccC--c-CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCc
Confidence            3445666542  3 7888998888665   34678888999999988876521 11235667888888887754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.59  E-value=2.2e-05  Score=71.02  Aligned_cols=66  Identities=17%  Similarity=0.097  Sum_probs=43.5

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ...+|..+.  . +|++|+|+++.+.   +..+.++++|++|+|+++.+..- ....+.++++|+.|+|.++.
T Consensus        31 l~~ip~~~~--~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           31 HASVPAGIP--T-NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             CSSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             cCccCCCCC--C-CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc
Confidence            345555442  3 7888888888665   34567888888888888776511 11235667888888887763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.59  E-value=1.4e-05  Score=69.07  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=32.1

Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ..+++|++|+++.+.+..++.    . ..+..+.+|+.|.+..+.-......-..++..+|+|+.|+++...
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~----~-~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGD----L-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGG----G-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hcCCCCCEEECCCCcCCcchh----h-HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            345555555555554332210    0 123344555555554321110011122356788888888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.52  E-value=1.8e-05  Score=70.32  Aligned_cols=163  Identities=15%  Similarity=0.045  Sum_probs=89.9

Q ss_pred             EEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEeeccC
Q 038350          171 VLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRHCQS  248 (472)
Q Consensus       171 ~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~  248 (472)
                      .++..+..+..-...-.++|++|+|.++.++. .....+.++++|+.|++.++. +..+..  ...+++|+.|.+.++..
T Consensus        11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC
Confidence            44444444443222345789999999988762 112336789999999999874 332221  12345777777776642


Q ss_pred             CceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccc
Q 038350          249 LSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECL  328 (472)
Q Consensus       249 ~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~  328 (472)
                        ..+.                ...+.++++|+.+++....-..      .....+..+++|++|+++.+.+..+.    
T Consensus        89 --~~~~----------------~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~l~~~~----  140 (208)
T 2o6s_A           89 --QSLP----------------NGVFDKLTQLKELALNTNQLQS------LPDGVFDKLTQLKDLRLYQNQLKSVP----  140 (208)
T ss_dssp             --CCCC----------------TTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCSCCC----
T ss_pred             --CccC----------------HhHhcCccCCCEEEcCCCcCcc------cCHhHhccCCcCCEEECCCCccceeC----
Confidence              1110                0112344445554443221111      11134567788888888877554322    


Q ss_pred             cccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          329 LCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       329 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                       + ..+..+.+|+.|.+..+.          +...||+|+.|.+...
T Consensus       141 -~-~~~~~l~~L~~L~l~~N~----------~~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          141 -D-GVFDRLTSLQYIWLHDNP----------WDCTCPGIRYLSEWIN  175 (208)
T ss_dssp             -T-TTTTTCTTCCEEECCSCC----------BCCCTTTTHHHHHHHH
T ss_pred             -H-HHhccCCCccEEEecCCC----------eecCCCCHHHHHHHHH
Confidence             1 234556788888876431          1245777777776554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=3.9e-05  Score=73.46  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=48.6

Q ss_pred             CCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCce-eEEEecccCchhHH
Q 038350          277 MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLE-HLTLNTGLERFELA  355 (472)
Q Consensus       277 ~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~  355 (472)
                      +++|+.+++.......      .....+.+|++|+.|++..+ +..+..      ..+..+.+|+ .+.+........  
T Consensus       225 ~~~L~~l~L~~n~i~~------I~~~aF~~~~~L~~l~l~~n-i~~I~~------~aF~~~~~L~~~l~l~~~l~~I~--  289 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT------IPDFTFAQKKYLLKIKLPHN-LKTIGQ------RVFSNCGRLAGTLELPASVTAIE--  289 (329)
T ss_dssp             CTTCCEEECTTBCCCE------ECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEEECTTCCEEC--
T ss_pred             cCCCeEEECCCCCcce------ecHhhhhCCCCCCEEECCcc-cceehH------HHhhCChhccEEEEEcccceEEc--
Confidence            6777777665321110      11245678888999988765 333221      3455677787 888754221110  


Q ss_pred             HHHHHHhcCCCcceEEEEeCc
Q 038350          356 AIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       356 ~l~~ll~~~p~L~~L~i~~~~  376 (472)
                        ...|.+|++|+.|++....
T Consensus       290 --~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          290 --FGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             --TTTTTTCTTEEEEEECSSC
T ss_pred             --hhhhhCCccCCEEEeCCCc
Confidence              1246789999999886553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.43  E-value=7.8e-07  Score=78.68  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      .+|..+..+. +|++|+|+++.+.. +.+.++++|++|+|.++.++  .+...+..+|+|+.|++.+|
T Consensus        39 ~l~~~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           39 KMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CCHHHHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEE
T ss_pred             hhhHHHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCC
Confidence            3444455555 77777777776652 34566677777777777666  23334455667777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.42  E-value=0.0001  Score=66.50  Aligned_cols=131  Identities=15%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             ecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchh
Q 038350          274 MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFE  353 (472)
Q Consensus       274 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  353 (472)
                      +.++++|+.+++....-..      .....+..+++|++|+++.+.+..+..      ..+..+.+|+.|.+..+.    
T Consensus        60 ~~~l~~L~~L~L~~N~l~~------i~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~~l~~L~~L~Ls~N~----  123 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGA------LPVGVFDSLTQLTVLDLGTNQLTVLPS------AVFDRLVHLKELFMCCNK----  123 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSC----
T ss_pred             hhCccCCcEEECCCCCCCC------cChhhcccCCCcCEEECCCCcCCccCh------hHhCcchhhCeEeccCCc----
Confidence            3455566666555332111      112346778899999998886653321      334567888998886532    


Q ss_pred             HHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhH-HHHHHHHhc
Q 038350          354 LAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEI-DLVKFLLRN  430 (472)
Q Consensus       354 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~-~~~~~ll~~  430 (472)
                      ...++.-+..+++|+.|+++.+.....+          +..     ...+.+|+.+.+.|  +.+...++ .+..++..+
T Consensus       124 l~~lp~~~~~l~~L~~L~L~~N~l~~~~----------~~~-----~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~  188 (229)
T 3e6j_A          124 LTELPRGIERLTHLTHLALDQNQLKSIP----------HGA-----FDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH  188 (229)
T ss_dssp             CCSCCTTGGGCTTCSEEECCSSCCCCCC----------TTT-----TTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred             ccccCcccccCCCCCEEECCCCcCCccC----------HHH-----HhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence            1133444588899999999887533222          000     11557888888876  55554433 445566665


Q ss_pred             Cccce
Q 038350          431 SRSIK  435 (472)
Q Consensus       431 ~~~L~  435 (472)
                      ...+.
T Consensus       189 ~~~~~  193 (229)
T 3e6j_A          189 TSIAM  193 (229)
T ss_dssp             GGGEE
T ss_pred             ccccc
Confidence            55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.25  E-value=4e-05  Score=66.13  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=32.1

Q ss_pred             cCCceEEEEEEeeeeecC-CCCCCcc-cccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          164 EQGMCIRVLNINSCGLGL-CNFVNFI-QLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~~-~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      .+. +|++|+++++.+.. +.+..+. +|++|+|+++.+++  + ..+..+++|+.|++.++.
T Consensus        17 ~~~-~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           17 NAV-RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             CTT-SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSC
T ss_pred             CcC-CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCc
Confidence            344 67777777766552 3333333 67777776666552  1 234556666666666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.24  E-value=9.4e-05  Score=66.33  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecc
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG  348 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  348 (472)
                      +..+++|++|+++.+.+..+     .| ..+..+.+|+.|.+..+
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~-----~~-~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTV-----AP-GAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCB-----CT-TTTTTCTTCCEEECCSC
T ss_pred             cCCCccCCEEECCCCcCCEE-----CH-HHhcCCCCCCEEEecCc
Confidence            45667777777777655432     12 34455667777777643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.24  E-value=4e-05  Score=76.63  Aligned_cols=36  Identities=17%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      ..|.|+.||+||+.+||+|||.++.++++.|||+|+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~   46 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWN   46 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999998

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.16  E-value=0.0006  Score=61.00  Aligned_cols=126  Identities=13%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             ecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchh
Q 038350          274 MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFE  353 (472)
Q Consensus       274 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  353 (472)
                      +..+++|+.+++.......      .....+.++++|++|+++.+.+..++.      ..+..+.+|+.|.+..+.-.. 
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~f~~l~~L~~L~L~~N~l~~-  118 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISE------LAPDAFQGLRSLNSLVLYGNKITELPK------SLFEGLFSLQLLLLNANKINC-  118 (220)
T ss_dssp             STTCTTCCEEECCSSCCCE------ECTTTTTTCSSCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCC-
T ss_pred             hhCCCCCCEEECCCCcCCC------cCHHHhhCCcCCCEEECCCCcCCccCH------hHccCCCCCCEEECCCCCCCE-
Confidence            3445556665554322111      112346677888888888876654321      334557788888886542111 


Q ss_pred             HHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHh
Q 038350          354 LAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLR  429 (472)
Q Consensus       354 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~  429 (472)
                        ..+..+..+++|+.|+++.+.....+   .       ..     ...+.+|+.+.+.+  +.+......+..++-.
T Consensus       119 --~~~~~~~~l~~L~~L~L~~N~l~~~~---~-------~~-----~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          119 --LRVDAFQDLHNLNLLSLYDNKLQTIA---K-------GT-----FSPLRAIQTMHLAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCCSCCC---T-------TT-----TTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             --eCHHHcCCCCCCCEEECCCCcCCEEC---H-------HH-----HhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence              11234677888999888887533222   0       00     11456788888876  5555555555555443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.15  E-value=4.9e-05  Score=75.49  Aligned_cols=44  Identities=20%  Similarity=0.395  Sum_probs=38.4

Q ss_pred             CCCCCCCCchH----HHHHHHhcCChhhHhhhhhhccccc----cccccccc
Q 038350            4 NTDPLSDFHDD----LIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHC   47 (472)
Q Consensus         4 ~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~   47 (472)
                      ..|.|+.||+|    |+.+||+||+.+++++++.|||+|+    |..+|+.+
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~   58 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL   58 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            46999999999    9999999999999999999999998    33456644

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.13  E-value=0.00012  Score=72.85  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=38.2

Q ss_pred             CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc----cccccccc
Q 038350            4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHC   47 (472)
Q Consensus         4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~   47 (472)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+    +..+|+..
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~   62 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence            469999999999999999999999999999999998    22357643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.12  E-value=0.00022  Score=69.14  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCC-CcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFV-NFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE  230 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~  230 (472)
                      ...+|..+.  . .+++|+|+++.+.   +..+. ++++|++|+|+++.++.-. ...+.++++|+.|+|.++. +..+.
T Consensus        30 l~~iP~~~~--~-~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~  104 (361)
T 2xot_A           30 LPNVPQSLP--S-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLD  104 (361)
T ss_dssp             CSSCCSSCC--T-TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred             cCccCccCC--C-CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCC
Confidence            345666542  3 6888999988665   34455 8999999999988776211 1236678999999999875 33332


Q ss_pred             E--eeCCCCeeEEEEeecc
Q 038350          231 I--TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       231 i--~~~~~~L~~L~l~~c~  247 (472)
                      -  ...+++|+.|.++++.
T Consensus       105 ~~~~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNH  123 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhCCCcCCCEEECCCCc
Confidence            1  2235677788777775

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.97  E-value=0.00013  Score=70.70  Aligned_cols=109  Identities=21%  Similarity=0.129  Sum_probs=73.0

Q ss_pred             CcccCCcccc--cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee
Q 038350          154 PQYVLPHFFY--EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK  228 (472)
Q Consensus       154 ~~~~lp~~~~--~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~  228 (472)
                      ....++...+  ... +|++|+|+++.+.   +..|.++++|++|+|+++.++. -....+.++++|+.|+|.++. +..
T Consensus        50 ~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~-i~~  126 (361)
T 2xot_A           50 NLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNH-IVV  126 (361)
T ss_dssp             CCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCE
T ss_pred             CCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCc-ccE
Confidence            3344555555  455 9999999998765   4568999999999999987762 112246789999999999875 333


Q ss_pred             EE--EeeCCCCeeEEEEeeccCCceeEE-------EeCCCeeEEEEee
Q 038350          229 VE--ITLRTLGLRKLIVRHCQSLSLGIE-------LWLPRLQYFEYAG  267 (472)
Q Consensus       229 l~--i~~~~~~L~~L~l~~c~~~~~~~~-------i~~p~L~~L~l~~  267 (472)
                      +.  ....+++|+.|.++++..  ..+.       ...++|+.|++++
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          127 VDRNAFEDMAQLQKLYLSQNQI--SRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC--CSCCGGGTC----CTTCCEEECCS
T ss_pred             ECHHHhCCcccCCEEECCCCcC--CeeCHHHhcCcccCCcCCEEECCC
Confidence            21  123356899998888863  1111       2356666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.94  E-value=8.6e-05  Score=76.57  Aligned_cols=86  Identities=17%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---E
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---E  230 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~  230 (472)
                      ..+|. +..+. +|++|+|+++.+.  |..+.++++|++|+|+++.++.  +. -+.++++|+.|+|.++. +..+   .
T Consensus       454 ~~lp~-~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~  527 (567)
T 1dce_A          454 TVLCH-LEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQ  527 (567)
T ss_dssp             SSCCC-GGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTG
T ss_pred             CCCcC-ccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcH
Confidence            34665 55556 8888888888765  4456788888888888887763  33 46778888888888764 2222   1


Q ss_pred             EeeCCCCeeEEEEeecc
Q 038350          231 ITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       231 i~~~~~~L~~L~l~~c~  247 (472)
                      .-..+++|+.|.++++.
T Consensus       528 ~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          528 PLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             GGGGCTTCCEEECTTSG
T ss_pred             HHhcCCCCCEEEecCCc
Confidence            12234577777776665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.84  E-value=0.00033  Score=61.37  Aligned_cols=97  Identities=18%  Similarity=0.053  Sum_probs=44.7

Q ss_pred             eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEE
Q 038350          168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIV  243 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l  243 (472)
                      +|++|+|+++.+.  |..+.++++|++|+|+++.++.- ....+.+++.|+.|+|.++. +..+.-  ...+++|+.|.+
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence            4555555555443  23345555555555555554410 01123445555555555543 222111  112345555655


Q ss_pred             eeccCCceeEE----EeCCCeeEEEEeee
Q 038350          244 RHCQSLSLGIE----LWLPRLQYFEYAGK  268 (472)
Q Consensus       244 ~~c~~~~~~~~----i~~p~L~~L~l~~~  268 (472)
                      .++..  ..+.    -..++|+.|.+.+.
T Consensus       110 ~~N~l--~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          110 HGNDI--SVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CSSCC--CBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCC--CeeChhhhhcCccccEEEeCCC
Confidence            55542  1111    12456777776653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.82  E-value=0.00015  Score=74.80  Aligned_cols=21  Identities=10%  Similarity=0.064  Sum_probs=14.8

Q ss_pred             hhcccCCCCcEEEEecccccc
Q 038350          302 SLFNPFSDARILQVSTSALKI  322 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~  322 (472)
                      ..+..+++|+.|+++++.+..
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGG
T ss_pred             HHHhcCCCCCEEEecCCcCCC
Confidence            446677888888887776553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.81  E-value=0.0005  Score=67.60  Aligned_cols=15  Identities=13%  Similarity=0.031  Sum_probs=7.7

Q ss_pred             cccCCCCcEEEEecc
Q 038350          304 FNPFSDARILQVSTS  318 (472)
Q Consensus       304 l~~l~~L~~L~l~~~  318 (472)
                      +.+|++|+.+.+..+
T Consensus       267 F~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          267 FYYCPELAEVTTYGS  281 (401)
T ss_dssp             TTTCTTCCEEEEESS
T ss_pred             hhCCCCCCEEEeCCc
Confidence            445555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.72  E-value=0.0015  Score=58.28  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCC
Q 038350          303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPD  382 (472)
Q Consensus       303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~  382 (472)
                      .+..+++|++|+++.+.+..+.     + ..+..+.+|+.|.+..+.-..   ..+..+..+++|+.|+++.+...... 
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~-----~-~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~-  145 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQ-----H-KMFKGLESLKTLMLRSNRITC---VGNDSFIGLSSVRLLSLYDNQITTVA-  145 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC-----G-GGGTTCSSCCEEECTTSCCCC---BCTTSSTTCTTCSEEECTTSCCCCBC-
T ss_pred             HhCCCCCCCEEECCCCccCccC-----H-hHhcCCcCCCEEECCCCcCCe---ECHhHcCCCccCCEEECCCCcCCEEC-
Confidence            3456666777777666544321     1 223445666666665331110   01223456677777777665322111 


Q ss_pred             CCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHH
Q 038350          383 FRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFL  427 (472)
Q Consensus       383 ~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~l  427 (472)
                               +..+     ..+.+|+.+.+.+  +.+......+..++
T Consensus       146 ---------~~~~-----~~l~~L~~L~L~~N~l~c~c~l~~l~~~~  178 (220)
T 2v70_A          146 ---------PGAF-----DTLHSLSTLNLLANPFNCNCYLAWLGEWL  178 (220)
T ss_dssp             ---------TTTT-----TTCTTCCEEECCSCCEECSGGGHHHHHHH
T ss_pred             ---------HHHh-----cCCCCCCEEEecCcCCcCCCchHHHHHHH
Confidence                     0001     1445677777655  55554444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.70  E-value=0.00014  Score=63.66  Aligned_cols=94  Identities=16%  Similarity=0.109  Sum_probs=44.8

Q ss_pred             ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEeeccCCceeEE----EeCCCee
Q 038350          188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQ  261 (472)
Q Consensus       188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~  261 (472)
                      ++|++|+|.++.++  .+...+.++++|+.|++.++. +..+.-  ...+++|+.|.++++..  ..+.    ...++|+
T Consensus        31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l--~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRL--RCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--CBCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCcc--CEeCHHHhCCCCCCC
Confidence            45666666666554  222335556666666666553 222211  12234666666666542  1111    1235666


Q ss_pred             EEEEeeeec-e---EeecCCCceeEEEEE
Q 038350          262 YFEYAGKMV-P---FDMRGMDDLEVVVLD  286 (472)
Q Consensus       262 ~L~l~~~~~-~---~~~~~~~~L~~l~l~  286 (472)
                      +|.+++... .   -.+..+++|+.+++.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            666655321 1   123445556665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.70  E-value=0.00028  Score=68.63  Aligned_cols=70  Identities=16%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccC-chhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLE-RFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ...++|++|+++.+.+..... ...+ ..+....+|++|+|..+.- ......+...+..+++|+.|+++.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~-~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGV-AVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHH-HHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             hcCCccceeeCCCCCCChHHH-HHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            356789999998876543211 1111 2234577899999976532 23345667788899999999998874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.68  E-value=0.0002  Score=62.64  Aligned_cols=89  Identities=22%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec--CC--CCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG--LC--NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      ....+|..++  . +|++|.|+++.+.  ++  .+..+++|++|+|+++.++.- ....+.+++.|+.|+|.++. +..+
T Consensus        19 ~l~~ip~~~~--~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~   93 (192)
T 1w8a_A           19 GLKEIPRDIP--L-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEI   93 (192)
T ss_dssp             CCSSCCSCCC--T-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEE
T ss_pred             CcCcCccCCC--C-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc-CCcc
Confidence            3456676553  3 7899999998775  22  268899999999999887621 12336678999999999875 3332


Q ss_pred             EE--eeCCCCeeEEEEeecc
Q 038350          230 EI--TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       230 ~i--~~~~~~L~~L~l~~c~  247 (472)
                      ..  ...+++|+.|.++++.
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           94 SNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSC
T ss_pred             CHHHhcCCCCCCEEECCCCc
Confidence            21  1234577777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.68  E-value=0.00054  Score=65.37  Aligned_cols=184  Identities=10%  Similarity=0.026  Sum_probs=101.2

Q ss_pred             CCceEEEEEEeee--eecCCCCCCcccccEEEeeeEEe---ChHHHHHHHhcCCCcceEeecc-----------------
Q 038350          165 QGMCIRVLNINSC--GLGLCNFVNFIQLTSLALTRVRL---SWAAMENIAHNCPFLETLSLVE-----------------  222 (472)
Q Consensus       165 ~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~-----------------  222 (472)
                      |. +|++|.|...  .+.+..|.+|++|++|++.++.+   .+..    +.+|..+..+.+..                 
T Consensus       100 ~~-~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A          100 KQ-TLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             CT-TCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cC-CCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccccc
Confidence            56 8888888762  23356688889999998876643   2322    34566666665433                 


Q ss_pred             cCCce-eEEEee-------------CCCCeeEEEEeeccC--CceeEEEeCCCeeEEEEeee-ec---eEeecCCCceeE
Q 038350          223 CYRIF-KVEITL-------------RTLGLRKLIVRHCQS--LSLGIELWLPRLQYFEYAGK-MV---PFDMRGMDDLEV  282 (472)
Q Consensus       223 c~~~~-~l~i~~-------------~~~~L~~L~l~~c~~--~~~~~~i~~p~L~~L~l~~~-~~---~~~~~~~~~L~~  282 (472)
                      |..+. .+.+..             ...++..+.+.+.-.  ....+.-.+++|+++++.+. ..   ...+.++.+|++
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            22111 011100             011233333332110  00000012688999998763 22   235678899999


Q ss_pred             EEEEEeecccccCchhhHHhhcccCCCCc-EEEEecccccccccccccccCCCcccCCceeEEEecc-cCchhHHHHHHH
Q 038350          283 VVLDYRLDTRYSYNGDDIESLFNPFSDAR-ILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG-LERFELAAIICL  360 (472)
Q Consensus       283 l~l~~~~~~~~~~~~~~~~~ll~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~l~~l  360 (472)
                      +.+......       .-...+.+|++|+ .+.+... +..+..      ..+..+.+|+.+.+..+ .....    ...
T Consensus       255 l~l~~ni~~-------I~~~aF~~~~~L~~~l~l~~~-l~~I~~------~aF~~c~~L~~l~l~~n~i~~I~----~~a  316 (329)
T 3sb4_A          255 IKLPHNLKT-------IGQRVFSNCGRLAGTLELPAS-VTAIEF------GAFMGCDNLRYVLATGDKITTLG----DEL  316 (329)
T ss_dssp             EECCTTCCE-------ECTTTTTTCTTCCEEEEECTT-CCEECT------TTTTTCTTEEEEEECSSCCCEEC----TTT
T ss_pred             EECCcccce-------ehHHHhhCChhccEEEEEccc-ceEEch------hhhhCCccCCEEEeCCCccCccc----hhh
Confidence            877532111       1224578899999 9999763 332221      44567788999988432 11110    124


Q ss_pred             HhcCCCcceEE
Q 038350          361 LISSPNITTLA  371 (472)
Q Consensus       361 l~~~p~L~~L~  371 (472)
                      +.+|++|++++
T Consensus       317 F~~~~~L~~ly  327 (329)
T 3sb4_A          317 FGNGVPSKLIY  327 (329)
T ss_dssp             TCTTCCCCEEE
T ss_pred             hcCCcchhhhc
Confidence            78899999986

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.49  E-value=0.00066  Score=58.30  Aligned_cols=106  Identities=19%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-  231 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-  231 (472)
                      ..+|..++  . +|++|+++++.+.   +..+.++++|++|+|.++.++. .....+..++.|+.|++.++. +..+.- 
T Consensus        20 ~~~p~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~~~   94 (177)
T 2o6r_A           20 TSVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK-LQSLPNG   94 (177)
T ss_dssp             SSCCTTCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             ccCCCCCC--C-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCC-ccccCHH
Confidence            34554432  3 7888888877665   2335778888888888777661 111235677888888888764 222211 


Q ss_pred             -eeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeee
Q 038350          232 -TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGK  268 (472)
Q Consensus       232 -~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~  268 (472)
                       ...+++|+.|.++++..  ..+.    -..++|++|.+.+.
T Consensus        95 ~~~~l~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           95 VFDKLTQLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEECCSS
T ss_pred             HhhCCcccCEEECcCCcc--eEeCHHHhcCCcccCEEEecCC
Confidence             12356888888887753  1211    23578888888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.42  E-value=0.0002  Score=76.09  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI  231 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i  231 (472)
                      ....+|..++.+. +|++|+|+++.+.  |..+.++++|++|+|+++.++  .+..-+.++++|+.|+|.++. ++.+.-
T Consensus       235 ~l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~lp~  310 (727)
T 4b8c_D          235 QIFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNM-VTTLPW  310 (727)
T ss_dssp             CCSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSC-CCCCCS
T ss_pred             CCCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCC-CCccCh
Confidence            3446777777776 7888888877665  344677788888888877776  333335677888888887763 332211


Q ss_pred             -eeCCCCeeEEEEeeccC
Q 038350          232 -TLRTLGLRKLIVRHCQS  248 (472)
Q Consensus       232 -~~~~~~L~~L~l~~c~~  248 (472)
                       ...+++|+.|.++++.+
T Consensus       311 ~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          311 EFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             STTSCTTCCCEECTTSCC
T ss_pred             hhhcCCCccEEeCCCCcc
Confidence             22356777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.36  E-value=0.00067  Score=59.24  Aligned_cols=61  Identities=16%  Similarity=0.133  Sum_probs=47.5

Q ss_pred             cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      +.... +|++|+|+++.+.   |..+.++++|++|+|+++.++.-. ...+.+.+.|+.|++.++.
T Consensus        50 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           50 FGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             GGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSSC
T ss_pred             cccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCc
Confidence            33455 9999999999775   566899999999999999877211 1235678999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.24  E-value=0.00093  Score=57.35  Aligned_cols=67  Identities=15%  Similarity=0.076  Sum_probs=47.3

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ....+|..+.  . +|++|+|+++.+.   +..+.++++|++|+|+++.++. -...++.++++|+.|+|.++.
T Consensus        23 ~l~~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           23 RLASVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CCSSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc
Confidence            3445666553  4 8899999988765   4457889999999998887762 111235678888888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.22  E-value=0.00094  Score=57.04  Aligned_cols=67  Identities=21%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ....+|..+.  . +|++|+|+++.+.   +..+.++++|++|+|+++.++. -....+.++++|+.|+|.++.
T Consensus        20 ~l~~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           20 SLASVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             CCSSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCc
Confidence            3445666553  4 8899999988765   4557889999999999887761 111235678899999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.21  E-value=0.0002  Score=76.12  Aligned_cols=105  Identities=16%  Similarity=0.069  Sum_probs=64.0

Q ss_pred             CcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-EeeCC
Q 038350          159 PHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-ITLRT  235 (472)
Q Consensus       159 p~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~~~~  235 (472)
                      |..+.... .|+.|+|+++.+.  +..+.++++|++|+|+++.++  .+..-+..+++|+.|+|.++. +..+. ....+
T Consensus       217 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC  292 (727)
T ss_dssp             -----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred             hhhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence            34444445 8888888888665  344567888888888888776  333346778888888888775 23221 11235


Q ss_pred             CCeeEEEEeeccC-CceeEEEeCCCeeEEEEee
Q 038350          236 LGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAG  267 (472)
Q Consensus       236 ~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~  267 (472)
                      ++|+.|.+++|.. .+..---..++|+.|.+++
T Consensus       293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            6888888887753 1111112356777777755

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.99  E-value=0.0042  Score=53.74  Aligned_cols=72  Identities=13%  Similarity=0.056  Sum_probs=37.9

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEE--ecc-cCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTL--NTG-LERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l--~~~-~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ..+...++|++|+|+.+.+..... .... ..+....+|++|++  ..+ +.......+...++.+++|++|+++.+
T Consensus        87 ~~L~~n~~L~~L~L~~N~i~~~g~-~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           87 EMLKVNNTLKSLNVESNFISGSGI-LALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHCSSCCEEECCSSCCCHHHH-HHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCCCcCEEECcCCcCCHHHH-HHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            344455566666666554332100 0011 22334556666666  322 122334467777788888888888665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=95.95  E-value=0.0025  Score=55.69  Aligned_cols=100  Identities=11%  Similarity=-0.002  Sum_probs=70.8

Q ss_pred             HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC--CCCCCcccccEEEeeeEEeChHHHH
Q 038350          129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL--CNFVNFIQLTSLALTRVRLSWAAME  206 (472)
Q Consensus       129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~  206 (472)
                      -+.++.|.+...             ....+| .+..+. +|++|+|++|.+..  ..+..+++|++|+|+++.+++  +.
T Consensus        47 l~~L~~L~ls~n-------------~l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~  109 (198)
T 1ds9_A           47 LKACKHLALSTN-------------NIEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS  109 (198)
T ss_dssp             TTTCSEEECSEE-------------EESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH
T ss_pred             CCCCCEEECCCC-------------CCcccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC
Confidence            478888887532             222356 555666 99999999998873  224567899999999998883  43


Q ss_pred             HHHhcCCCcceEeecccCCceeE---EEeeCCCCeeEEEEeecc
Q 038350          207 NIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       207 ~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~  247 (472)
                      . +..+++|+.|++.++.- ..+   ..-..+++|+.|.+.++.
T Consensus       110 ~-~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          110 G-IEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             H-HHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             c-cccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence            3 67789999999998742 221   122346799999998886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.92  E-value=0.0059  Score=52.83  Aligned_cols=132  Identities=9%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             hhHHhhcccCCCCcEEEEecc-cccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          298 DDIESLFNPFSDARILQVSTS-ALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       298 ~~~~~ll~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ..+...+...++|++|+++.+ .+..... .... ..+....+|++|+|..+. .......+...++..++|++|+|+.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~-~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTL-KACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHH-HHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHH-HHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            356788888999999999876 5432110 0111 233456789999998653 22335567778889999999999887


Q ss_pred             cccCCCCCCCCCCCCCccccccccc-ccccCccEEEE--Eeee-cChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          376 AIMHTPDFRPNYFPLSRGEIWTTNG-SILDHLECVQF--EGFT-GKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~L~~v~i--~~f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                      .....            +....... ...++|+++.+  .+-. |.++...+.+ .++..+.|+++.+.....
T Consensus       104 ~i~~~------------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          104 FISGS------------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CCCHH------------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             cCCHH------------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence            42100            00000111 14568999999  4332 3344344544 556778999999976654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.88  E-value=0.012  Score=50.11  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCC
Q 038350          303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPD  382 (472)
Q Consensus       303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~  382 (472)
                      .+..+++|++|+++.+.+..+.     + ..+..+.+|+.|.+..+.-..   .....+..+++|+.|+++.+.....+ 
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~-  116 (177)
T 2o6r_A           47 VFDKLTQLTKLSLSQNQIQSLP-----D-GVFDKLTKLTILYLHENKLQS---LPNGVFDKLTQLKELALDTNQLKSVP-  116 (177)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCC-----T-TTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred             HhcCcccccEEECCCCcceEeC-----h-hHccCCCccCEEECCCCCccc---cCHHHhhCCcccCEEECcCCcceEeC-
Confidence            4566788888888777554322     1 234567778888876432111   11224567888888888877432222 


Q ss_pred             CCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHhcCcc
Q 038350          383 FRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLRNSRS  433 (472)
Q Consensus       383 ~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~~~~  433 (472)
                        .        ..    ...+.+|+.+.+.+  +.+....+..+...+.+...
T Consensus       117 --~--------~~----~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~  155 (177)
T 2o6r_A          117 --D--------GI----FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  155 (177)
T ss_dssp             --T--------TT----TTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGG
T ss_pred             --H--------HH----hcCCcccCEEEecCCCeeccCccHHHHHHHHhhCcc
Confidence              0        00    01456788888866  55665556666555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.68  E-value=0.0057  Score=59.97  Aligned_cols=56  Identities=14%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeE--EeChHHHHHHHhcCCCcceEeecc
Q 038350          161 FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRV--RLSWAAMENIAHNCPFLETLSLVE  222 (472)
Q Consensus       161 ~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~  222 (472)
                      .+..|. +|+.+.|.++.+.   ...|. +.+|+.+.|...  .+.+.    .+.+|++|+.+.+..
T Consensus       175 aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          175 IFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT
T ss_pred             HhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEeCCchheehhh----HhhCCCCCCEEecCC
Confidence            344567 9999999876444   34455 689999998642  33322    367899999999865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.45  E-value=0.0044  Score=52.74  Aligned_cols=68  Identities=21%  Similarity=0.112  Sum_probs=48.4

Q ss_pred             cccCCcc-cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          155 QYVLPHF-FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       155 ~~~lp~~-~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ...++.. +.... +|++|+|+++.+.   +..|.++++|++|+|+++.++. -....+..+++|+.|+|.+..
T Consensus        42 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           42 ITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCC
Confidence            3445443 33455 9999999999775   3346899999999999998872 111236678899999988753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.39  E-value=0.005  Score=52.65  Aligned_cols=80  Identities=25%  Similarity=0.128  Sum_probs=55.3

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCc-ccccCCceEEEEEEeeeeec--C-CCCCCcccccEEEeeeEEeChHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPH-FFYEQGMCIRVLNINSCGLG--L-CNFVNFIQLTSLALTRVRLSWAAM  205 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~l~--~-~~~~~~~~L~~L~L~~~~~~~~~l  205 (472)
                      .+++.|.+..             +....++. .+.... +|++|+|+++.+.  + ..|.++++|++|+|+++.+.. -.
T Consensus        33 ~~L~~L~Ls~-------------N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~   97 (174)
T 2r9u_A           33 TDKQRLWLNN-------------NQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IP   97 (174)
T ss_dssp             TTCSEEECCS-------------SCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred             CCCcEEEeCC-------------CCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eC
Confidence            5677777642             23334433 344455 9999999999776  3 336899999999999998771 11


Q ss_pred             HHHHhcCCCcceEeecccC
Q 038350          206 ENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       206 ~~l~~~cp~Le~L~l~~c~  224 (472)
                      ...+..+++|+.|+|.++.
T Consensus        98 ~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTTTCTTCSEEECCSSC
T ss_pred             HHHhccccCCCEEEeCCCC
Confidence            1236678899999998764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.21  E-value=0.0041  Score=59.56  Aligned_cols=90  Identities=20%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             CcccCCcccccCCceEEEEEEee-eeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINS-CGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~-~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      ....+|. +.... +|++|+|++ +.+.   +..|.++++|+.|+|+++.++. -....+.++++|+.|+|.++. +..+
T Consensus        20 ~l~~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~   95 (347)
T 2ifg_A           20 ALDSLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA-LESL   95 (347)
T ss_dssp             CCTTTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred             CCCccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc-ccee
Confidence            3445777 65566 899999986 7665   3558899999999999988762 112346789999999999864 3332


Q ss_pred             EE-eeCCCCeeEEEEeecc
Q 038350          230 EI-TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       230 ~i-~~~~~~L~~L~l~~c~  247 (472)
                      .- .....+|+.|.+.++.
T Consensus        96 ~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           96 SWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CSTTTCSCCCCEEECCSSC
T ss_pred             CHHHcccCCceEEEeeCCC
Confidence            21 0111248888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.15  E-value=0.014  Score=56.96  Aligned_cols=63  Identities=8%  Similarity=0.126  Sum_probs=39.1

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ..+.++.+|+.++|.... +.+..      ..+..+.+|+.+.+........    ..-+.+|++|++++|...
T Consensus       314 ~aF~~c~~L~~i~lp~~v-~~I~~------~aF~~c~~L~~i~lp~~l~~I~----~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYLV-EEIGK------RSFRGCTSLSNINFPLSLRKIG----ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTTC-CEECT------TTTTTCTTCCEECCCTTCCEEC----TTTBTTCTTCCEEEEEGG
T ss_pred             hhhcCCCCCCEEEeCCcc-cEEhH------HhccCCCCCCEEEECccccEeh----HHHhhCCCCCCEEEECCC
Confidence            346788999999986442 22211      3345677888887753322110    123688999999998654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=91.29  E-value=0.19  Score=47.74  Aligned_cols=64  Identities=20%  Similarity=0.206  Sum_probs=34.0

Q ss_pred             cccCCCCcEEEEec-ccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          304 FNPFSDARILQVST-SALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       304 l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      +..+++|+.|+|++ +.+..+.     + ..+..+.+|+.|.|+.+.-..   ..+..+..+++|+.|+|+.+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~-----~-~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLE-----L-RDLRGLGELRNLTIVKSGLRF---VAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEEC-----G-GGSCSCCCCSEEECCSSCCCE---ECTTGGGSCSCCCEEECCSSC
T ss_pred             CCCCCCeeEEEccCCCCCCCcC-----h-hHhccccCCCEEECCCCccce---eCHHHhcCCcCCCEEeCCCCc
Confidence            55566677777764 5544322     1 234456666777665431111   112245667777777776664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=88.59  E-value=0.2  Score=45.75  Aligned_cols=66  Identities=21%  Similarity=0.210  Sum_probs=42.8

Q ss_pred             HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCch----hHHHHHHHHhcCCCcceEE
Q 038350          300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERF----ELAAIICLLISSPNITTLA  371 (472)
Q Consensus       300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~l~~ll~~~p~L~~L~  371 (472)
                      +..++..+++|+.|+|+++.+..+..   .  ..+..+ +|+.|.+..+--..    .......++..+|+|+.|+
T Consensus       188 l~~~~~~l~~L~~L~Ls~N~i~~~~~---l--~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          188 MSSIVQKAPNLKILNLSGNELKSERE---L--DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTHHHHSTTCCEEECTTSCCCSGGG---G--GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             chhHHhhCCCCCEEECCCCccCCchh---h--hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            33556789999999999887664421   1  122223 88999887542111    1234556889999999984

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=87.82  E-value=0.14  Score=46.84  Aligned_cols=63  Identities=17%  Similarity=0.156  Sum_probs=37.0

Q ss_pred             CCcccccCCceEEEEEEeeeeecC-CCCCCcc--cccEEEeeeEEeCh------HHHHHHHhcCCCcceEeec
Q 038350          158 LPHFFYEQGMCIRVLNINSCGLGL-CNFVNFI--QLTSLALTRVRLSW------AAMENIAHNCPFLETLSLV  221 (472)
Q Consensus       158 lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~--~L~~L~L~~~~~~~------~~l~~l~~~cp~Le~L~l~  221 (472)
                      +|..+..++ +|++|+|+++.+.. ..+..+.  +|++|+|.++.+..      .-...++..+|.|+.|+=.
T Consensus       188 l~~~~~~l~-~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          188 MSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GTTHHHHST-TCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             chhHHhhCC-CCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            344444555 77788777776653 2233333  77777777765542      2234566677777776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.26  E-value=0.58  Score=45.29  Aligned_cols=99  Identities=12%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCC
Q 038350          257 LPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQ  333 (472)
Q Consensus       257 ~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  333 (472)
                      +++|+.+.+.....   ...+.+|.+|+++.+.-....       .-...+.+|.+|+.+.|.... ..+..      ..
T Consensus       287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~-------I~~~aF~~C~~L~~i~ip~sv-~~I~~------~a  352 (394)
T 4gt6_A          287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQ-------ILDDAFAGCEQLERIAIPSSV-TKIPE------SA  352 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-------ECTTTTTTCTTCCEEEECTTC-CBCCG------GG
T ss_pred             ccccccccCCCcccccCceeecCCCCcCEEEeCCcccE-------ehHhHhhCCCCCCEEEECccc-CEEhH------hH
Confidence            56777777754322   234667888998876421100       112457789999999996542 22211      33


Q ss_pred             CcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          334 LFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       334 l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      +..|.+|+.+.+...     .... .-+..|.+|+.+.+...
T Consensus       353 F~~C~~L~~i~~~~~-----~~~~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          353 FSNCTALNNIEYSGS-----RSQW-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             GTTCTTCCEEEESSC-----HHHH-HTCBCCCCC--------
T ss_pred             hhCCCCCCEEEECCc-----eeeh-hhhhccCCCCEEEeCCC
Confidence            556788999888532     1122 34567999999987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.23  E-value=0.8  Score=43.90  Aligned_cols=61  Identities=11%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             cCCcccccCCceEEEEEEeee--eecCCCCCCcccccEEEee-eE-EeChHHHHHHHhcCCCcceEeeccc
Q 038350          157 VLPHFFYEQGMCIRVLNINSC--GLGLCNFVNFIQLTSLALT-RV-RLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       157 ~lp~~~~~~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~-~~-~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      .++...|.+. +|+.+.+...  .+....|.++ +|+...+. .+ .+...    .+..|+.|+...+...
T Consensus       104 ~I~~~aF~~~-~L~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~----~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          104 KFGDYVFQGT-DLDDFEFPGATTEIGNYIFYNS-SVKRIVIPKSVTTIKDG----IGYKAENLEKIEVSSN  168 (379)
T ss_dssp             EECTTTTTTC-CCSEEECCTTCCEECTTTTTTC-CCCEEEECTTCCEECSC----TTTTCTTCCEEEECTT
T ss_pred             EeccceeccC-CcccccCCCccccccccccccc-eeeeeeccceeeccccc----hhcccccccccccccc
Confidence            4455555665 7877777543  2223344444 45555442 22 22211    2456777777776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	472
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.002

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 6  DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLW-LHCRSFELHEASFMMP 60
          D +S    +L + +++FL   D  +   + + W     D  LW   C+   + E   +  
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKR 76

Query: 61 DSRQYWLSIGRRTQVMYMKR 80
                  I    +  Y+++
Sbjct: 77 RKVIKPGFIHSPWKSAYIRQ 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	472
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.98
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.66
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.58
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.5
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.44
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.34
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.31
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.17
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.96
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.14
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.15
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	85.73

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.8e-12  Score=118.89  Aligned_cols=186  Identities=14%  Similarity=0.108  Sum_probs=124.6

Q ss_pred             eEEEEEEeeeeecCCC----CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEeeCCCCeeE
Q 038350          168 CIRVLNINSCGLGLCN----FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRK  240 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~  240 (472)
                      +|++|+|++|.+....    +.+|++|++|+|.++.+++..+.. +..||+|+.|++.+|.++++.   .+...+++|++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            7999999988776322    478899999999999888777776 567899999999999877642   22334579999


Q ss_pred             EEEeeccC-C---ce-eEEEeCCCeeEEEEeeeece-------EeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350          241 LIVRHCQS-L---SL-GIELWLPRLQYFEYAGKMVP-------FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS  308 (472)
Q Consensus       241 L~l~~c~~-~---~~-~~~i~~p~L~~L~l~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~  308 (472)
                      |++++|.. .   .. .+.-.+++|+.|.+.|....       ....++|+|+++++..+....     +.....+..++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it-----d~~~~~l~~~~  200 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----NDCFQEFFQLN  200 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----GGGGGGGGGCT
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC-----chhhhhhcccC
Confidence            99999862 1   11 11223678999998874211       123568889888876432211     12334456789


Q ss_pred             CCcEEEEeccc-ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcc
Q 038350          309 DARILQVSTSA-LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNIT  368 (472)
Q Consensus       309 ~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~  368 (472)
                      +|++|.++.+. +...   +  . ..+..+++|+.|++..+....   ++..+.+.||+|+
T Consensus       201 ~L~~L~L~~C~~i~~~---~--l-~~L~~~~~L~~L~l~~~~~d~---~l~~l~~~lp~L~  252 (284)
T d2astb2         201 YLQHLSLSRCYDIIPE---T--L-LELGEIPTLKTLQVFGIVPDG---TLQLLKEALPHLQ  252 (284)
T ss_dssp             TCCEEECTTCTTCCGG---G--G-GGGGGCTTCCEEECTTSSCTT---CHHHHHHHSTTSE
T ss_pred             cCCEEECCCCCCCChH---H--H-HHHhcCCCCCEEeeeCCCCHH---HHHHHHHhCcccc
Confidence            99999997642 2111   1  1 234567889999887653322   5666778888876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-11  Score=113.79  Aligned_cols=179  Identities=17%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee--EEEeeCCCCeeEEEEeeccC-C---ceeEEEeCC
Q 038350          185 VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK--VEITLRTLGLRKLIVRHCQS-L---SLGIELWLP  258 (472)
Q Consensus       185 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--l~i~~~~~~L~~L~l~~c~~-~---~~~~~i~~p  258 (472)
                      ....+|++|+|+++.++++.+..++.+||+|++|.+.+|. +.+  +..-+.+++|++|++++|.. .   +..+.-.+|
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            4556899999999999999999999999999999999995 322  22123457999999999862 1   112223568


Q ss_pred             CeeEEEEeeeec--e----E-eecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc-ccccccccccc
Q 038350          259 RLQYFEYAGKMV--P----F-DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA-LKIFPTECLLC  330 (472)
Q Consensus       259 ~L~~L~l~~~~~--~----~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~-~~~~~~~~~~~  330 (472)
                      +|++|++++...  .    . ....++.|+.+++..+....   ....+..++..+++|++|+++++. +..     ...
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i---~~~~l~~l~~~~~~L~~L~L~~~~~itd-----~~~  193 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL---QKSDLSTLVRRCPNLVHLDLSDSVMLKN-----DCF  193 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS---CHHHHHHHHHHCTTCSEEECTTCTTCCG-----GGG
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccc---ccccccccccccccccccccccccCCCc-----hhh
Confidence            888888876321  0    1 11234566666655321111   122455566666777777775432 111     011


Q ss_pred             cCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          331 GRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       331 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                       ..+..+++|++|.+..|.... ..++.. +..||+|+.|++.++
T Consensus       194 -~~l~~~~~L~~L~L~~C~~i~-~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 -QEFFQLNYLQHLSLSRCYDII-PETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -GGGGGCTTCCEEECTTCTTCC-GGGGGG-GGGCTTCCEEECTTS
T ss_pred             -hhhcccCcCCEEECCCCCCCC-hHHHHH-HhcCCCCCEEeeeCC
Confidence             223345566666665432111 112222 345666666665443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.9e-10  Score=71.82  Aligned_cols=32  Identities=22%  Similarity=0.497  Sum_probs=30.8

Q ss_pred             CCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      ++.||+||+.+||++||.+|.++++.|||+|+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~   32 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWY   32 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=1.1e-09  Score=97.37  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=29.5

Q ss_pred             cCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          164 EQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       164 ~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      .++ +|++|+++++.+.. .++..+++|+++.+.++.++  .+.. +.+++.|+.|.+.+|.
T Consensus        61 ~l~-~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~--~i~~-l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          61 YLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLK--NVSA-IAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             GCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS--CCGG-GTTCTTCCEEECTTSC
T ss_pred             cCC-CCcEeecCCceeecccccccccccccccccccccc--cccc-cccccccccccccccc
Confidence            344 66666666554442 23455666666666555444  1111 3455666666665553

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6e-09  Score=79.93  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             CCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            5 TDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         5 ~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      .|.|+.||+||+.+||++||.+|+++++.|||+|+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~   50 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR   50 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=3.2e-09  Score=81.02  Aligned_cols=36  Identities=17%  Similarity=0.356  Sum_probs=34.5

Q ss_pred             CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      ..|.|+.||+||+.+||++|+.+|.++++.|||+|+
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~   37 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWN   37 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHH
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=2e-08  Score=96.14  Aligned_cols=164  Identities=13%  Similarity=0.105  Sum_probs=99.6

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENI  208 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l  208 (472)
                      .++++|.+...+             ...++ .+..+. +|++|+|+++.+.. +++.++++|++|++.++.+.+  +.. 
T Consensus        44 ~~l~~L~l~~~~-------------I~~l~-gl~~L~-nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~--i~~-  105 (384)
T d2omza2          44 DQVTTLQADRLG-------------IKSID-GVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-  105 (384)
T ss_dssp             TTCCEEECCSSC-------------CCCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-
T ss_pred             CCCCEEECCCCC-------------CCCcc-ccccCC-CCCEEeCcCCcCCCCccccCCccccccccccccccc--ccc-
Confidence            578888875322             12232 344456 99999999998863 458899999999999998873  222 


Q ss_pred             HhcCCCcceEeecccCCce-----------eE-----EE-----------------------------------------
Q 038350          209 AHNCPFLETLSLVECYRIF-----------KV-----EI-----------------------------------------  231 (472)
Q Consensus       209 ~~~cp~Le~L~l~~c~~~~-----------~l-----~i-----------------------------------------  231 (472)
                      ++++++|+.|.+.++...+           ..     .+                                         
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            6789999999988653211           00     00                                         


Q ss_pred             -------eeCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec-eE-eecCCCceeEEEEEEeecccccCchhhHH
Q 038350          232 -------TLRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-PF-DMRGMDDLEVVVLDYRLDTRYSYNGDDIE  301 (472)
Q Consensus       232 -------~~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  301 (472)
                             ...+++++.+.+.++.. .... ....++|++|.+.+... .+ .+..+++|+.+++.......       + 
T Consensus       186 ~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-------~-  256 (384)
T d2omza2         186 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-------L-  256 (384)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------C-
T ss_pred             ccccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC-------C-
Confidence                   00034566666655542 1111 12356788888876422 22 35667888887765432111       1 


Q ss_pred             hhcccCCCCcEEEEecccc
Q 038350          302 SLFNPFSDARILQVSTSAL  320 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~  320 (472)
                      .-+..+++|++|+++...+
T Consensus       257 ~~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         257 APLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCC
T ss_pred             CcccccccCCEeeccCccc
Confidence            1256778889998876543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.46  E-value=1.2e-08  Score=88.56  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=25.0

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +|++|+|+++.+.. +++.++++|++|++.++.+..  +.. +.+++.|+.|.+.+|
T Consensus        63 nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          63 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNN  116 (199)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEECCSS
T ss_pred             CcCcCccccccccCcccccCCccccccccccccccc--ccc-ccccccccccccccc
Confidence            55555555554432 224455555555555544431  111 344555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=1.4e-08  Score=88.85  Aligned_cols=53  Identities=21%  Similarity=0.145  Sum_probs=24.7

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +|++|+|+++.+.. +.+..+++|++|++.++.+++  +.. +..+|.|+.|.+.+|
T Consensus        69 ~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTS
T ss_pred             CCCEEeCCCccccCccccccCccccccccccccccc--ccc-ccccccccccccccc
Confidence            55555555554431 223445555555555554441  211 344555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-08  Score=91.61  Aligned_cols=189  Identities=21%  Similarity=0.128  Sum_probs=111.1

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI  231 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i  231 (472)
                      ...+|..+.  . +|++|+|+++.+.   +..|.++++|++|+|+++.++  .+.. .+.+|.|+.|++.++.-......
T Consensus        22 L~~iP~~lp--~-~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~--~l~~-~~~l~~L~~L~Ls~N~l~~~~~~   95 (266)
T d1p9ag_          22 LTALPPDLP--K-DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQV-DGTLPVLGTLDLSHNQLQSLPLL   95 (266)
T ss_dssp             CSSCCSCCC--T-TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--EEEC-CSCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCeeCcCcC--c-CCCEEECcCCcCCCcCHHHhhcccccccccccccccc--cccc-ccccccccccccccccccccccc
Confidence            345676552  3 7899999988664   455788999999999888776  2221 35689999999988753222223


Q ss_pred             eeCCCCeeEEEEeeccC-Cc-eeEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcc
Q 038350          232 TLRTLGLRKLIVRHCQS-LS-LGIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFN  305 (472)
Q Consensus       232 ~~~~~~L~~L~l~~c~~-~~-~~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~  305 (472)
                      ...+++|+.|.++++.. .. .......+++++|.+.+...    .-.+..++.++.+++....-..      .....+.
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~------~~~~~~~  169 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE------LPAGLLN  169 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC------CCTTTTT
T ss_pred             cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc------cCccccc
Confidence            34456888888887753 11 11112345677777765321    1223456667766655332111      1123456


Q ss_pred             cCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-C-chhHHHHHHHHh
Q 038350          306 PFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-E-RFELAAIICLLI  362 (472)
Q Consensus       306 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-~~~~~~l~~ll~  362 (472)
                      .+++|++|+|+++.+..+      | ..+..+.+|+.|.|..+- . .....++...++
T Consensus       170 ~l~~L~~L~Ls~N~L~~l------p-~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         170 GLENLDTLLLQENSLYTI------P-KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             TCTTCCEEECCSSCCCCC------C-TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             cccccceeecccCCCccc------C-hhHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            677788888877765533      2 334456677777776432 1 123345555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.8e-08  Score=91.62  Aligned_cols=192  Identities=18%  Similarity=0.086  Sum_probs=107.1

Q ss_pred             ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCC-ceeEEEeCCCeeEEEEe
Q 038350          188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSL-SLGIELWLPRLQYFEYA  266 (472)
Q Consensus       188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~-~~~~~i~~p~L~~L~l~  266 (472)
                      ++|++|+|+++.++.-. ...+.++++|++|+|.++. ++.+...+.+++|+.|.++++... ........++|+.|.++
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            57999999998776211 1236789999999999884 566655556678888888877631 11111223445555544


Q ss_pred             eeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEe
Q 038350          267 GKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLN  346 (472)
Q Consensus       267 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  346 (472)
                      +.                    ....      .....+..+.+++.|.+..+.+..+..      ..+..+.+++.|.+.
T Consensus       109 ~~--------------------~~~~------~~~~~~~~l~~l~~L~l~~n~l~~l~~------~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_         109 FN--------------------RLTS------LPLGALRGLGELQELYLKGNELKTLPP------GLLTPTPKLEKLSLA  156 (266)
T ss_dssp             SS--------------------CCCC------CCSSTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECT
T ss_pred             cc--------------------ccce------eeccccccccccccccccccccceecc------ccccccccchhcccc
Confidence            32                    1111      011234456677777776665443221      223345666777665


Q ss_pred             cccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHH
Q 038350          347 TGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLV  424 (472)
Q Consensus       347 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~  424 (472)
                      .+.-..   .....+..+++|+.|+|+.+.....++   .        .     ....+|+.|.+.|  +.......++.
T Consensus       157 ~N~l~~---~~~~~~~~l~~L~~L~Ls~N~L~~lp~---~--------~-----~~~~~L~~L~L~~Np~~CdC~~~~l~  217 (266)
T d1p9ag_         157 NNNLTE---LPAGLLNGLENLDTLLLQENSLYTIPK---G--------F-----FGSHLLPFAFLHGNPWLCNCEILYFR  217 (266)
T ss_dssp             TSCCSC---CCTTTTTTCTTCCEEECCSSCCCCCCT---T--------T-----TTTCCCSEEECCSCCBCCSGGGHHHH
T ss_pred             cccccc---cCccccccccccceeecccCCCcccCh---h--------H-----CCCCCCCEEEecCCCCCCCcchHHHH
Confidence            431110   111235667788888877765333320   0        0     1346777788776  55555555666


Q ss_pred             HHHHhcCc
Q 038350          425 KFLLRNSR  432 (472)
Q Consensus       425 ~~ll~~~~  432 (472)
                      +++-++..
T Consensus       218 ~wl~~~~~  225 (266)
T d1p9ag_         218 RWLQDNAE  225 (266)
T ss_dssp             HHHHHTGG
T ss_pred             HHHHhccc
Confidence            66654443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.34  E-value=6.6e-08  Score=85.52  Aligned_cols=182  Identities=13%  Similarity=0.098  Sum_probs=124.3

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC  246 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c  246 (472)
                      +|++|.+.+|.+.. .++..+++|++|+++++.+++  +.. +..+++|+.|.+.+|.. +.+.--..+++|+.+.+.+|
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~--~~~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTS
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeec--ccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            78888888887763 557899999999999998873  222 78899999999998753 33332234679999999888


Q ss_pred             cCCceeEEEeCCCeeEEEEeeeec--eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccc
Q 038350          247 QSLSLGIELWLPRLQYFEYAGKMV--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFP  324 (472)
Q Consensus       247 ~~~~~~~~i~~p~L~~L~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~  324 (472)
                      ......-....+.+..+.+.+...  ...+..+++|+.+.+........        .-+.++++|+.|+++++.+..+ 
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--------~~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--------TPLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEECCSSCCCCC-
T ss_pred             cccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--------hhhcccccceecccCCCccCCC-
Confidence            631111112456777887765322  22356788899887764322111        1267899999999988765532 


Q ss_pred             cccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEe
Q 038350          325 TECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAIST  374 (472)
Q Consensus       325 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  374 (472)
                             .++..+++|++|.++.+. -.   .+. -++++++|+.|+|+.
T Consensus       189 -------~~l~~l~~L~~L~Ls~N~-lt---~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -------SPLASLPNLIEVHLKNNQ-IS---DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -------GGGGGCTTCCEEECTTSC-CC---BCG-GGTTCTTCCEEEEEE
T ss_pred             -------hhhcCCCCCCEEECcCCc-CC---CCc-ccccCCCCCEEEeeC
Confidence                   224567899999997642 11   222 278999999999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.32  E-value=6.9e-08  Score=89.80  Aligned_cols=207  Identities=14%  Similarity=0.049  Sum_probs=119.7

Q ss_pred             CcccCCcccccCCceEEEEEEeee-eec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSC-GLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~-~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      ....+|..+.... +|++|+|+++ .+.   |+.+.++++|++|+|+++.+.. .....+..++.|+.+++..+.....+
T Consensus        64 g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          64 KPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             SCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             CCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccc-cccccccchhhhcccccccccccccC
Confidence            3457889888888 9999999874 453   5668899999999999987762 12233667899999999876432222


Q ss_pred             E-EeeCCCCeeEEEEeeccCC--ceeEEEeCCC-eeEEEEeeeec-eEeecCCCceeEEEEEEeecccccCchhhHHhhc
Q 038350          230 E-ITLRTLGLRKLIVRHCQSL--SLGIELWLPR-LQYFEYAGKMV-PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLF  304 (472)
Q Consensus       230 ~-i~~~~~~L~~L~l~~c~~~--~~~~~i~~p~-L~~L~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll  304 (472)
                      . .-..+++|+.+.++++...  ........++ ++.+.+.+... .........+....++......    ........
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~----~~~~~~~~  217 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML----EGDASVLF  217 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE----EECCGGGC
T ss_pred             chhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence            1 1223568888888877630  0000012223 35555443211 1111111112211222111100    01234556


Q ss_pred             ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      ..+++++.|.+..+.+..     ..  ..+..+.+|+.|++..+.-..   .++.-+.++|+|+.|+++.+.
T Consensus       218 ~~~~~l~~l~~~~~~l~~-----~~--~~~~~~~~L~~L~Ls~N~l~g---~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAF-----DL--GKVGLSKNLNGLDLRNNRIYG---TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CTTSCCSEEECCSSEECC-----BG--GGCCCCTTCCEEECCSSCCEE---CCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccc-----cc--cccccccccccccCccCeecc---cCChHHhCCCCCCEEECcCCc
Confidence            677888888887765432     11  224456788888886542211   345557788999999988774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.7e-08  Score=89.11  Aligned_cols=108  Identities=19%  Similarity=0.116  Sum_probs=67.9

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-  231 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-  231 (472)
                      ..+|..+.  . ++++|+|+++.+.   +..|.++++|++|+++++.+..- ......+++.++.+.+.....+..+.- 
T Consensus        24 ~~iP~~ip--~-~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          24 QAVPVGIP--A-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             SSCCTTCC--T-TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CccCCCCC--C-CCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccccccccch
Confidence            35565542  3 7899999998664   45689999999999988766521 112356688888888776655544421 


Q ss_pred             -eeCCCCeeEEEEeeccC-Cce-eEEEeCCCeeEEEEee
Q 038350          232 -TLRTLGLRKLIVRHCQS-LSL-GIELWLPRLQYFEYAG  267 (472)
Q Consensus       232 -~~~~~~L~~L~l~~c~~-~~~-~~~i~~p~L~~L~l~~  267 (472)
                       ...+++|+.|.+.++.. ... ......++|+.+.+.+
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~  138 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD  138 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhcc
Confidence             22346888888877763 111 1112345666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=2e-07  Score=86.20  Aligned_cols=87  Identities=17%  Similarity=0.098  Sum_probs=58.0

Q ss_pred             cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI  231 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i  231 (472)
                      ...+|..+.  . ++++|+|+++.+.   +..|.++++|++|++.++.+..- ....+.+++.|+.|++.++. ++.+.-
T Consensus        22 L~~lP~~l~--~-~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-l~~l~~   96 (305)
T d1xkua_          22 LEKVPKDLP--P-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-LKELPE   96 (305)
T ss_dssp             CCSCCCSCC--T-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred             CCccCCCCC--C-CCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-cCcCcc
Confidence            456676653  3 7999999998765   34578999999999998876611 12336789999999999874 333221


Q ss_pred             eeCCCCeeEEEEeecc
Q 038350          232 TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       232 ~~~~~~L~~L~l~~c~  247 (472)
                       ...+.++.|.+....
T Consensus        97 -~~~~~l~~L~~~~n~  111 (305)
T d1xkua_          97 -KMPKTLQELRVHENE  111 (305)
T ss_dssp             -SCCTTCCEEECCSSC
T ss_pred             -chhhhhhhhhccccc
Confidence             112366666665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=5.9e-08  Score=83.98  Aligned_cols=76  Identities=13%  Similarity=0.077  Sum_probs=51.1

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC  246 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c  246 (472)
                      ++++|++.++.+.. .++..+++|++|+|+++.+++  +.. +.++|+|+.|.+.++.. ..+..-..+++|+.|.+++|
T Consensus        41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECCSS
T ss_pred             CCCEEECCCCCCCCccccccCCCcCcCccccccccC--ccc-ccCCccccccccccccc-cccccccccccccccccccc
Confidence            78888888887764 556788889999998887773  222 67888888888887753 22221223456666666655


Q ss_pred             c
Q 038350          247 Q  247 (472)
Q Consensus       247 ~  247 (472)
                      .
T Consensus       117 ~  117 (199)
T d2omxa2         117 Q  117 (199)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=2e-07  Score=81.34  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=109.5

Q ss_pred             eEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350          168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC  246 (472)
Q Consensus       168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c  246 (472)
                      +|++|.+.++.+. ..++..+++|++|+|+++.+++  +.. ++.+++|+.|++.+|. +..+.-...+++|+.|.+.+|
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-ccccccccccccccccccccc
Confidence            6777888777665 3557889999999999998873  322 5789999999999875 444432344679999999988


Q ss_pred             cC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccc
Q 038350          247 QS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIF  323 (472)
Q Consensus       247 ~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~  323 (472)
                      .. .... ....++|+.+.+.+... . .....+++|+.+++.......       +. -+..+++|+.|+++++.+..+
T Consensus       123 ~~~~~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-------i~-~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         123 GISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-------IV-PLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------CG-GGTTCTTCCEEECCSSCCCBC
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccc-------cc-cccCCCCCCEEECCCCCCCCC
Confidence            64 1111 23467888888866322 1 234567889888776432211       11 267899999999998866533


Q ss_pred             ccccccccCCCcccCCceeEEEe
Q 038350          324 PTECLLCGRQLFQFWQLEHLTLN  346 (472)
Q Consensus       324 ~~~~~~~~~~l~~~~~L~~L~l~  346 (472)
                              ..+..+.+|+.|+|.
T Consensus       194 --------~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 --------RALAGLKNLDVLELF  208 (210)
T ss_dssp             --------GGGTTCTTCSEEEEE
T ss_pred             --------hhhcCCCCCCEEEcc
Confidence                    235568899999985

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.2e-08  Score=75.12  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=33.3

Q ss_pred             CCCCCCCc----hHHHHHHHhcCChhhHhhhhhhccccc
Q 038350            5 TDPLSDFH----DDLIIVIITFLPFIDAYRLCMSKKKWY   39 (472)
Q Consensus         5 ~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSkrWr   39 (472)
                      .|.|+.||    |||+.+|||||+.+|.++++.|||+|+
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~   46 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWY   46 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            58899999    599999999999999999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.04  E-value=1.9e-07  Score=89.03  Aligned_cols=166  Identities=15%  Similarity=0.074  Sum_probs=85.8

Q ss_pred             CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeCCCeeEE
Q 038350          185 VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWLPRLQYF  263 (472)
Q Consensus       185 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L  263 (472)
                      ..+++++.|.+.++.+++-  .. ...++.|++|++.++. +..+.....+++|+.|.+.+|.. .... ....|+|++|
T Consensus       194 ~~l~~~~~l~l~~n~i~~~--~~-~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L  268 (384)
T d2omza2         194 AKLTNLESLIATNNQISDI--TP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL  268 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCC--GG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             ccccccceeeccCCccCCC--Cc-ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCCc-ccccccCCEe
Confidence            5556666666665555421  11 3446666666666553 22221112234666666666543 1111 1234566666


Q ss_pred             EEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCce
Q 038350          264 EYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLE  341 (472)
Q Consensus       264 ~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~  341 (472)
                      .+.+... . ..+..++.+..+.+.......        ...+..+++++.|+++.+.+..+.        ++..+++|+
T Consensus       269 ~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~--------~~~~~~~~~l~~L~ls~n~l~~l~--------~l~~l~~L~  332 (384)
T d2omza2         269 KLGANQISNISPLAGLTALTNLELNENQLED--------ISPISNLKNLTYLTLYFNNISDIS--------PVSSLTKLQ  332 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCSC--------CGGGGGCTTCSEEECCSSCCSCCG--------GGGGCTTCC
T ss_pred             eccCcccCCCCcccccccccccccccccccc--------ccccchhcccCeEECCCCCCCCCc--------ccccCCCCC
Confidence            6654211 1 123445555555443221110        122566778888888776554321        244577888


Q ss_pred             eEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          342 HLTLNTGLERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       342 ~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .|.+..+.- .   .+. -+..+|+|+.|+++.+.
T Consensus       333 ~L~L~~n~l-~---~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         333 RLFFANNKV-S---DVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EEECCSSCC-C---CCG-GGGGCTTCCEEECCSSC
T ss_pred             EEECCCCCC-C---CCh-hHcCCCCCCEEECCCCc
Confidence            888865421 1   122 25778888888887764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.03  E-value=1.3e-06  Score=82.17  Aligned_cols=267  Identities=12%  Similarity=0.044  Sum_probs=143.9

Q ss_pred             CCcccccCCceEEEEEEeeeeecC-------CCCCCcccccEEEeeeEEeC------hH---HHHHHHhcCCCcceEeec
Q 038350          158 LPHFFYEQGMCIRVLNINSCGLGL-------CNFVNFIQLTSLALTRVRLS------WA---AMENIAHNCPFLETLSLV  221 (472)
Q Consensus       158 lp~~~~~~~~~L~~L~L~~~~l~~-------~~~~~~~~L~~L~L~~~~~~------~~---~l~~l~~~cp~Le~L~l~  221 (472)
                      +...+-.+. +|++|+|+++.+..       ..+...++|+.|++.++...      ..   .+...+..|+.|+.|+|.
T Consensus        23 l~~~L~~~~-~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhhCC-CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            334444455 78888888876653       23467788888888766332      12   233445568888888888


Q ss_pred             ccCCce----eE-EEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCc
Q 038350          222 ECYRIF----KV-EITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYN  296 (472)
Q Consensus       222 ~c~~~~----~l-~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  296 (472)
                      +|.--.    .+ ..-..+++|++|.+.+|.+.......-+..|..+.     ........+.|+.+.+....  ..+..
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-----~~~~~~~~~~L~~l~l~~n~--i~~~~  174 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA-----VNKKAKNAPPLRSIICGRNR--LENGS  174 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH-----HHHHHHTCCCCCEEECCSSC--CTGGG
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccc-----cccccccCcccceeeccccc--ccccc
Confidence            774211    01 11112357788877777531000000000000000     00011234455555443211  11111


Q ss_pred             hhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccC-chhHHHHHHHHhcCCCcceEEEEeC
Q 038350          297 GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLE-RFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       297 ~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ...+...+..+++++.|.+..+.+.......... ..+..+.+|+.|++..+.- ......+...+..+|+|+.|.|+.+
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchh-hhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            2346667778899999999876543210000011 3456788899999875432 2234567778899999999999776


Q ss_pred             cccCCCCCCCCCCCCCcccccccccc--cccCccEEEEEeee-cChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350          376 AIMHTPDFRPNYFPLSRGEIWTTNGS--ILDHLECVQFEGFT-GKICEIDLVKFLLRNSRSIKELNIKQLIR  444 (472)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~L~~v~i~~f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~~  444 (472)
                      ......          ..... ....  ....|+++.+.+-. +.++...+.+.+..+.+.|+++.+.....
T Consensus       254 ~i~~~g----------~~~l~-~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         254 LLSARG----------AAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CCCHHH----------HHHHH-HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccCchh----------hHHHH-HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            321000          00000 0000  33578999887633 23344456666666889999998865443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5e-07  Score=87.85  Aligned_cols=147  Identities=10%  Similarity=0.041  Sum_probs=77.4

Q ss_pred             cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc-hhHHHHHHHH-hcCCCcceEEEEeCcccCCC
Q 038350          304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER-FELAAIICLL-ISSPNITTLAISTGAIMHTP  381 (472)
Q Consensus       304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~ll-~~~p~L~~L~i~~~~~~~~~  381 (472)
                      ....+.++.+.++.+.+..... .... .......+|++|+|+.+.-. .....+...+ +.++.|+.|+++.+..... 
T Consensus       308 ~~~~~~L~~l~l~~~~l~~~~~-~~l~-~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~-  384 (460)
T d1z7xw1         308 LEPGCQLESLWVKSCSFTAACC-SHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS-  384 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGH-HHHH-HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH-
T ss_pred             cccccccccccccccchhhhhh-hhcc-cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH-
Confidence            3345688899887664432110 0000 11234567899988754211 1122333333 4678899998887732100 


Q ss_pred             CCCCCCCCCCccccccccc-ccccCccEEEEEeee-cChhhHHHHHHHHhcCccceEEEEeeccccCcchhhHHHHHHHH
Q 038350          382 DFRPNYFPLSRGEIWTTNG-SILDHLECVQFEGFT-GKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQ  459 (472)
Q Consensus       382 ~~~~~~~~~~~~~~w~~~~-~~~~~L~~v~i~~f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~~~~~~~~~l~~  459 (472)
                                 +....... ...++|+++.+.+=. +.++...+++.+-.+.+.||.+.+.......     +..+.+..
T Consensus       385 -----------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~-----~~~~~l~~  448 (460)
T d1z7xw1         385 -----------SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE-----EMEDRLQA  448 (460)
T ss_dssp             -----------HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH-----HHHHHHHH
T ss_pred             -----------HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH-----HHHHHHHH
Confidence                       00000011 145788888887522 2334456777777778889988887544321     33344555


Q ss_pred             hhhccCCeEE
Q 038350          460 AVAASGGVVI  469 (472)
Q Consensus       460 ~~~as~~~~i  469 (472)
                      +.+-.+..+|
T Consensus       449 l~~~~~~l~~  458 (460)
T d1z7xw1         449 LEKDKPSLRV  458 (460)
T ss_dssp             HHHHCTTSEE
T ss_pred             HHHhCCCCEE
Confidence            5444455543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=8.8e-07  Score=73.59  Aligned_cols=37  Identities=14%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          185 VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       185 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      .++..||+|+|+++.++  .+..+...++.|+.|+++++
T Consensus        15 ~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N   51 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDN   51 (162)
T ss_dssp             ECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSS
T ss_pred             cCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCC
Confidence            44455666666665554  22333455666666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=1.8e-06  Score=79.49  Aligned_cols=212  Identities=16%  Similarity=0.059  Sum_probs=104.1

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccc-cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFY-EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM  205 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l  205 (472)
                      ++++.|.+..             +....+|...| .+. +|++|++.++.+.   +..|.++++|++|++.++.++.  +
T Consensus        31 ~~l~~L~Ls~-------------N~i~~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l   94 (305)
T d1xkua_          31 PDTALLDLQN-------------NKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--L   94 (305)
T ss_dssp             TTCCEEECCS-------------SCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--C
T ss_pred             CCCCEEECcC-------------CcCCCcChhHhhccc-cccccccccccccccchhhhhCCCccCEecccCCccCc--C
Confidence            4667776642             34456776444 455 9999999988554   4568889999999998887651  1


Q ss_pred             HHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEeeccCCcee----EEEeCCCeeEEEEeeee-ceEeecCCC
Q 038350          206 ENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRHCQSLSLG----IELWLPRLQYFEYAGKM-VPFDMRGMD  278 (472)
Q Consensus       206 ~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~~~~~----~~i~~p~L~~L~l~~~~-~~~~~~~~~  278 (472)
                      .  ...++.|+.|.+..+.. ..+.-  ......+..+.+..+......    .-...++|+.+.+.+.. ..+...-.+
T Consensus        95 ~--~~~~~~l~~L~~~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~  171 (305)
T d1xkua_          95 P--EKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP  171 (305)
T ss_dssp             C--SSCCTTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCT
T ss_pred             c--cchhhhhhhhhccccch-hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCC
Confidence            1  12356777777765421 11110  011123333433332210000    01123445555554421 112222244


Q ss_pred             ceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHH
Q 038350          279 DLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAII  358 (472)
Q Consensus       279 ~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~  358 (472)
                      +|+.+++.......      .....+..++.++.|.++.+.+..+.     + ..+..+.+|+.|++..+.    ...++
T Consensus       172 ~L~~L~l~~n~~~~------~~~~~~~~~~~l~~L~~s~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~----L~~lp  235 (305)
T d1xkua_         172 SLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVD-----N-GSLANTPHLRELHLNNNK----LVKVP  235 (305)
T ss_dssp             TCSEEECTTSCCCE------ECTGGGTTCTTCCEEECCSSCCCEEC-----T-TTGGGSTTCCEEECCSSC----CSSCC
T ss_pred             ccCEEECCCCcCCC------CChhHhhccccccccccccccccccc-----c-ccccccccceeeeccccc----ccccc
Confidence            55555443221111      11233455566666666655443221     1 233445566666665331    11222


Q ss_pred             HHHhcCCCcceEEEEeCc
Q 038350          359 CLLISSPNITTLAISTGA  376 (472)
Q Consensus       359 ~ll~~~p~L~~L~i~~~~  376 (472)
                      .-+..+|+|+.|+++.+.
T Consensus       236 ~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TTTTTCSSCCEEECCSSC
T ss_pred             cccccccCCCEEECCCCc
Confidence            234556666666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.74  E-value=6.3e-06  Score=76.07  Aligned_cols=214  Identities=11%  Similarity=-0.038  Sum_probs=127.3

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAME  206 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~  206 (472)
                      ..++.|.+...+           ...-.+|..+.... +|++|+|+++.+.   +..+..++.|+.+++..+.+.. .+.
T Consensus        76 ~~L~~L~Ls~~N-----------~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~-~~p  142 (313)
T d1ogqa_          76 PYLNFLYIGGIN-----------NLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLP  142 (313)
T ss_dssp             TTCSEEEEEEET-----------TEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCC
T ss_pred             cccccccccccc-----------cccccccccccccc-ccchhhhccccccccccccccchhhhcccccccccccc-cCc
Confidence            678888886321           11125888888888 9999999999765   4446889999999998876552 222


Q ss_pred             HHHhcCCCcceEeecccCCceeEEE-eeCCCC-eeEEEEeeccCCceeE---EEeCCCeeEEEEeeee----ceEeecCC
Q 038350          207 NIAHNCPFLETLSLVECYRIFKVEI-TLRTLG-LRKLIVRHCQSLSLGI---ELWLPRLQYFEYAGKM----VPFDMRGM  277 (472)
Q Consensus       207 ~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~-L~~L~l~~c~~~~~~~---~i~~p~L~~L~l~~~~----~~~~~~~~  277 (472)
                      .-+..++.|+.+.+.++.-.+.+.- ...+.+ ++.+.+..+..  ...   .+...++..+.+....    .+.....+
T Consensus       143 ~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l--~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~  220 (313)
T d1ogqa_         143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--EEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred             hhhccCcccceeeccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence            3477899999999998764332211 111223 35555555431  111   1112233444443321    12334567


Q ss_pred             CceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHH
Q 038350          278 DDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAI  357 (472)
Q Consensus       278 ~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l  357 (472)
                      ++++.+++.......       ....+..+++++.|+++.+.+.     +..| ..+..+.+|+.|+|+.+.-..   .+
T Consensus       221 ~~l~~l~~~~~~l~~-------~~~~~~~~~~L~~L~Ls~N~l~-----g~iP-~~l~~L~~L~~L~Ls~N~l~g---~i  284 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAF-------DLGKVGLSKNLNGLDLRNNRIY-----GTLP-QGLTQLKFLHSLNVSFNNLCG---EI  284 (313)
T ss_dssp             SCCSEEECCSSEECC-------BGGGCCCCTTCCEEECCSSCCE-----ECCC-GGGGGCTTCCEEECCSSEEEE---EC
T ss_pred             ccccccccccccccc-------cccccccccccccccCccCeec-----ccCC-hHHhCCCCCCEEECcCCcccc---cC
Confidence            778777665432211       1123566789999999887654     3455 566778899999987542111   11


Q ss_pred             HHHHhcCCCcceEEEEeC
Q 038350          358 ICLLISSPNITTLAISTG  375 (472)
Q Consensus       358 ~~ll~~~p~L~~L~i~~~  375 (472)
                      +. +.++++|+.|.+.++
T Consensus       285 P~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         285 PQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             CC-STTGGGSCGGGTCSS
T ss_pred             CC-cccCCCCCHHHhCCC
Confidence            21 244566666666555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2e-06  Score=78.37  Aligned_cols=196  Identities=16%  Similarity=0.062  Sum_probs=112.6

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeE-EeChHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRV-RLSWAAM  205 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~-~~~~~~l  205 (472)
                      .+++.|.+..             +....+|...|...+.|++|+++++.+.   +..+.+++.++.+..... .+.. --
T Consensus        32 ~~~~~L~Ls~-------------N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~-l~   97 (284)
T d1ozna_          32 AASQRIFLHG-------------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VD   97 (284)
T ss_dssp             TTCSEEECTT-------------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CC
T ss_pred             CCCCEEECcC-------------CcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            4567776642             3445677654443338999999987654   455677888888876533 2321 11


Q ss_pred             HHHHhcCCCcceEeecccCCceeE-EEeeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeeceEeecCCCce
Q 038350          206 ENIAHNCPFLETLSLVECYRIFKV-EITLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMVPFDMRGMDDL  280 (472)
Q Consensus       206 ~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~~~~~~~~~~L  280 (472)
                      ...++++++|+.|++.++...... ......++|+.+.+.++..  ..+.    -..++|++|.+++....         
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l--~~i~~~~f~~~~~L~~L~l~~N~l~---------  166 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRIS---------  166 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCC---------
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccc--cccChhHhccccchhhcccccCccc---------
Confidence            223678999999999987532111 1122345888888887753  2211    12345566655442110         


Q ss_pred             eEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHH
Q 038350          281 EVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICL  360 (472)
Q Consensus       281 ~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l  360 (472)
                                 .      .....+.++++|+.|.++.+.+..+     .| ..+..+.+|++|++..+.-..   .....
T Consensus       167 -----------~------l~~~~f~~l~~L~~l~l~~N~l~~i-----~~-~~f~~l~~L~~L~l~~N~i~~---~~~~~  220 (284)
T d1ozna_         167 -----------S------VPERAFRGLHSLDRLLLHQNRVAHV-----HP-HAFRDLGRLMTLYLFANNLSA---LPTEA  220 (284)
T ss_dssp             -----------E------ECTTTTTTCTTCCEEECCSSCCCEE-----CT-TTTTTCTTCCEEECCSSCCSC---CCHHH
T ss_pred             -----------c------cchhhhccccccchhhhhhcccccc-----Ch-hHhhhhhhccccccccccccc---ccccc
Confidence                       0      0113455677777777776654422     22 445556677777776432111   12234


Q ss_pred             HhcCCCcceEEEEeCc
Q 038350          361 LISSPNITTLAISTGA  376 (472)
Q Consensus       361 l~~~p~L~~L~i~~~~  376 (472)
                      +..+++|+.|+++..+
T Consensus       221 ~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         221 LAPLRALQYLRLNDNP  236 (284)
T ss_dssp             HTTCTTCCEEECCSSC
T ss_pred             cccccccCEEEecCCC
Confidence            6778888888877663

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.9e-06  Score=72.26  Aligned_cols=89  Identities=12%  Similarity=0.120  Sum_probs=51.6

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-  231 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-  231 (472)
                      ..+|..++  . ++++|+|+++.+.   +..|.++++|++|+|+++.+...--...+.+++.+++|.+..+..+..+.. 
T Consensus        21 ~~iP~~l~--~-~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          21 TEIPSDLP--R-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SSCCSCSC--S-CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCcCCCCC--C-CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            35565543  2 6788888877554   345678888888888776543110011245677778877776655443321 


Q ss_pred             -eeCCCCeeEEEEeecc
Q 038350          232 -TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       232 -~~~~~~L~~L~l~~c~  247 (472)
                       ...+++|+.|.+.++.
T Consensus        98 ~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             SEECCTTCCEEEEESCC
T ss_pred             cccccccccccccchhh
Confidence             1233456666665553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.1e-05  Score=68.20  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=54.9

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccc-cCCceEEEEEEeeeee----cCCCCCCcccccEEEeeeE-EeChH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFY-EQGMCIRVLNINSCGL----GLCNFVNFIQLTSLALTRV-RLSWA  203 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~l----~~~~~~~~~~L~~L~L~~~-~~~~~  203 (472)
                      ++++.|++..             +....+|...| ++. +|++|+|+++.+    ++..|.+++++++|.+..+ .+.. 
T Consensus        29 ~~l~~L~Ls~-------------n~i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-   93 (242)
T d1xwdc1          29 RNAIELRFVL-------------TKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-   93 (242)
T ss_dssp             SCCSEEEEES-------------CCCCEECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-
T ss_pred             CCCCEEECcC-------------CcCCccChhHhhccc-hhhhhhhccccccceeeccccccccccccccccccccccc-
Confidence            5778887753             33446666544 456 999999998743    2445788999999988654 3331 


Q ss_pred             HHHHHHhcCCCcceEeecccC
Q 038350          204 AMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       204 ~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      .....+.++|.|+.|.+.++.
T Consensus        94 ~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECTTSEECCTTCCEEEEESCC
T ss_pred             cccccccccccccccccchhh
Confidence            111236789999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.4e-06  Score=67.41  Aligned_cols=55  Identities=16%  Similarity=0.196  Sum_probs=24.4

Q ss_pred             eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      .|++|+|+++.+.. +++..+++|++|+++++.++.- ...++..+|+|+.|++.++
T Consensus        42 ~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          42 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSC
T ss_pred             cCCEEECCCCCCCccCCcccCcchhhhhcccccccCC-Cccccccccccccceeccc
Confidence            45555555554432 3344555555555555544310 0012334555555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.39  E-value=4.6e-06  Score=78.14  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=64.3

Q ss_pred             chHhHHHHHHHHHH-CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-------------
Q 038350          116 YRQNIDKWIEIVLE-KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-------------  181 (472)
Q Consensus       116 ~~~~i~~wl~~~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-------------  181 (472)
                      ....+..++..... ..+++|.+...  ....      .....+-..+.... +|+.|++.++....             
T Consensus        16 ~~e~~~~l~~~L~~~~~l~~L~Ls~n--~i~~------~~~~~l~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~   86 (344)
T d2ca6a1          16 TTEDEKSVFAVLLEDDSVKEIVLSGN--TIGT------EAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLL   86 (344)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTS--EECH------HHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhCCCCCEEECcCC--cCCH------HHHHHHHHHHHhCC-CCCEEECCCCcccccccccchHHHHHH
Confidence            35666677766553 77888877421  1000      01122223344456 99999998764321             


Q ss_pred             CCCCCcccccEEEeeeEEeChH---HHHHHHhcCCCcceEeecccC
Q 038350          182 CNFVNFIQLTSLALTRVRLSWA---AMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       182 ~~~~~~~~L~~L~L~~~~~~~~---~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ..+..+++|+.|+|.++.+++.   .+...+..++.|+.|++.+|.
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            1125689999999999988754   455566789999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.36  E-value=9.2e-07  Score=76.12  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             ccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR  234 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~  234 (472)
                      ..+|..+.... +|++|+|+++.+.. +++.++++|++|+|+++.++  .+..+...++.|+.|++.++. +..+.-...
T Consensus        38 ~~l~~sl~~L~-~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~  113 (198)
T d1m9la_          38 EKMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IASLSGIEK  113 (198)
T ss_dssp             CCCHHHHHHTT-TCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEE-CCCHHHHHH
T ss_pred             hhhhhHHhccc-ccceeECcccCCCCcccccCCccccChhhcccccc--ccccccccccccccccccccc-ccccccccc
Confidence            34566666666 89999999988874 45788999999999999887  233344556789999998763 333321122


Q ss_pred             CCCeeEEEEeecc
Q 038350          235 TLGLRKLIVRHCQ  247 (472)
Q Consensus       235 ~~~L~~L~l~~c~  247 (472)
                      +++|+.|.++++.
T Consensus       114 l~~L~~L~L~~N~  126 (198)
T d1m9la_         114 LVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHSSEEEESEEE
T ss_pred             cccccccccccch
Confidence            3466666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.7e-06  Score=79.58  Aligned_cols=42  Identities=12%  Similarity=-0.055  Sum_probs=25.8

Q ss_pred             cccCccEEEEEeee-cChhhHHHHHHHHhcCccceEEEEeecc
Q 038350          402 ILDHLECVQFEGFT-GKICEIDLVKFLLRNSRSIKELNIKQLI  443 (472)
Q Consensus       402 ~~~~L~~v~i~~f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~  443 (472)
                      ...+|+++.+.+-. +.++...+.+.+.++.+.|+++.+..+.
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            34578888876532 2223335556565667788888887664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=7.7e-06  Score=64.33  Aligned_cols=53  Identities=19%  Similarity=0.181  Sum_probs=27.0

Q ss_pred             eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +|++|+++++.+.  |+.+..+++|++|+++++.+++  +.. +..+|+|+.|++.++
T Consensus        21 ~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          21 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSS
T ss_pred             CCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCC
Confidence            5566666555444  2334555556666555555541  111 344555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.01  E-value=9.2e-05  Score=57.88  Aligned_cols=80  Identities=29%  Similarity=0.327  Sum_probs=61.7

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeCh-HHHHH
Q 038350          130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSW-AAMEN  207 (472)
Q Consensus       130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~-~~l~~  207 (472)
                      ..+++|.+..             +....+|..+..+. +|++|+++++.+.. +++..+++|++|++.++.+.+ ..+..
T Consensus        20 ~~L~~L~ls~-------------N~l~~lp~~~~~l~-~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~   85 (124)
T d1dcea3          20 LLVTHLDLSH-------------NRLRALPPALAALR-CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQP   85 (124)
T ss_dssp             TTCCEEECCS-------------SCCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred             CCCCEEECCC-------------CccCcchhhhhhhh-cccccccccccccccCccccccccCeEECCCCccCCCCCchh
Confidence            5677776642             44556787777777 99999999998874 568899999999999998873 23333


Q ss_pred             HHhcCCCcceEeecccC
Q 038350          208 IAHNCPFLETLSLVECY  224 (472)
Q Consensus       208 l~~~cp~Le~L~l~~c~  224 (472)
                       +..||+|+.|++.+..
T Consensus        86 -l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          86 -LVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             -GGGCTTCCEEECTTSG
T ss_pred             -hcCCCCCCEEECCCCc
Confidence             6789999999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.50  E-value=0.00014  Score=61.49  Aligned_cols=89  Identities=22%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             CcccCCcccccCCceEEEEEEeeeeec----CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350          154 PQYVLPHFFYEQGMCIRVLNINSCGLG----LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV  229 (472)
Q Consensus       154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~----~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l  229 (472)
                      ....+|..+.  . ++++|+|+++.+.    +..|.++++|++|+|.++.+..- ....+...+.|+.|++.++. +..+
T Consensus        19 ~L~~iP~~lp--~-~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l   93 (192)
T d1w8aa_          19 GLKEIPRDIP--L-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEI   93 (192)
T ss_dssp             CCSSCCSCCC--T-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEE
T ss_pred             CcCccCCCCC--C-CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccc-cccc
Confidence            3456676653  3 7899999998774    24468899999999998877621 12336678999999999874 3333


Q ss_pred             EE--eeCCCCeeEEEEeecc
Q 038350          230 EI--TLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       230 ~i--~~~~~~L~~L~l~~c~  247 (472)
                      .-  ...+++|+.|.++++.
T Consensus        94 ~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSC
T ss_pred             CHHHHhCCCcccccccCCcc
Confidence            21  2335677777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.98  E-value=0.00089  Score=61.58  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=24.3

Q ss_pred             eEEEEEEeeeeecCCCCCCc-ccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          168 CIRVLNINSCGLGLCNFVNF-IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       168 ~L~~L~L~~~~l~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      +|++|++.++.+..  +..+ +.|++|+++++.+.  .+.. ...+++|+.|++.++
T Consensus        79 ~L~~L~l~~n~l~~--l~~lp~~L~~L~L~~n~l~--~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          79 SLKSLLVDNNNLKA--LSDLPPLLEYLGVSNNQLE--KLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TCCEEECCSSCCSC--CCSCCTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSS
T ss_pred             hhhhhhhhhcccch--hhhhccccccccccccccc--cccc-hhhhccceeeccccc
Confidence            45555555543331  1112 24666666655554  1111 234566666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0015  Score=52.90  Aligned_cols=68  Identities=21%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             cccCCcccccCCceEEEEEEeee-eec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350          155 QYVLPHFFYEQGMCIRVLNINSC-GLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY  224 (472)
Q Consensus       155 ~~~lp~~~~~~~~~L~~L~L~~~-~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  224 (472)
                      ....|..+.... +|++|++.++ .+.   +..|.++++|+.|+|+++.++.=. ...+.+.++|+.|+|+++.
T Consensus        20 ~~~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          20 ALDSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCTTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             CccCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            344555555556 8888888754 243   456788889999999888766100 1236678888888888764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.52  E-value=0.0034  Score=51.26  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=36.6

Q ss_pred             hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc----CchhHHHHHHHHhcCCCcceEEEEeC
Q 038350          302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL----ERFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ..+...+.|++|+++++.+..... .... ..+.....|++|++..+.    .......+...++..+.|++|.++..
T Consensus        66 ~~L~~n~~L~~L~L~~n~i~~~g~-~~l~-~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          66 ELIETSPSLRVLNVESNFLTPELL-ARLL-RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHCSSCCEEECCSSBCCHHHH-HHHH-HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hhhhhcccccceeeehhhcchHHH-HHHH-HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            344445556666665553321100 0001 123444556666664321    11224567778888899988877554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.45  E-value=0.0013  Score=55.56  Aligned_cols=101  Identities=12%  Similarity=0.053  Sum_probs=66.5

Q ss_pred             HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCC-CCcccccEEEeeeEEeChHHHH
Q 038350          129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNF-VNFIQLTSLALTRVRLSWAAME  206 (472)
Q Consensus       129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~-~~~~~L~~L~L~~~~~~~~~l~  206 (472)
                      -.+++.|.+....             ...++ .+..+. +|++|+|++|.+.. +.+ ..+++|++|++.++.+++  +.
T Consensus        47 L~~L~~L~Ls~n~-------------I~~i~-~l~~l~-~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~  109 (198)
T d1m9la_          47 LKACKHLALSTNN-------------IEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS  109 (198)
T ss_dssp             TTTCCEEECSEEE-------------ESCCC-CHHHHT-TCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HH
T ss_pred             ccccceeECcccC-------------CCCcc-cccCCc-cccChhhcccccccccccccccccccccccccccccc--cc
Confidence            3678888775321             22343 345566 89999999888763 332 456789999999888873  33


Q ss_pred             HHHhcCCCcceEeecccCC--ceeEEEeeCCCCeeEEEEeecc
Q 038350          207 NIAHNCPFLETLSLVECYR--IFKVEITLRTLGLRKLIVRHCQ  247 (472)
Q Consensus       207 ~l~~~cp~Le~L~l~~c~~--~~~l~i~~~~~~L~~L~l~~c~  247 (472)
                      . +..+++|+.|++.++.-  +..+..-..+++|+.|.+.++.
T Consensus       110 ~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             c-ccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            3 56788899999987641  1112222346789999988875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.31  E-value=0.0095  Score=48.47  Aligned_cols=130  Identities=13%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             hHHhhcccCCCCcEEEEecc-cccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          299 DIESLFNPFSDARILQVSTS-ALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       299 ~~~~ll~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+.++....++|+.|.|+.. .+..-.. .... ..+....+|++|.+..+. .......+...++.++.|+.|+|+.+.
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~-~~l~-~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERI-RSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHH-HHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHH-HHHH-HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            34555666677777777642 1211000 0011 123345667777776442 222344566667777888888777663


Q ss_pred             ccCCCCCCCCCCCCCcccccccc-cccccCccEEEEEee----ecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350          377 IMHTPDFRPNYFPLSRGEIWTTN-GSILDHLECVQFEGF----TGKICEIDLVKFLLRNSRSIKELNIKQLI  443 (472)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~L~~v~i~~f----~g~~~e~~~~~~ll~~~~~L~~l~i~~~~  443 (472)
                      ....            +...... ......|++|.+.+-    -|.+...+++..+ ...+.|+++.+.+..
T Consensus        84 i~~~------------g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L-~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          84 LTPE------------LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS  142 (167)
T ss_dssp             CCHH------------HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred             cchH------------HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHH-HhCCCccEeeCcCCC
Confidence            1100            0000000 114456777777653    2444555677755 455889999886654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.14  E-value=0.0068  Score=49.27  Aligned_cols=41  Identities=10%  Similarity=-0.001  Sum_probs=25.8

Q ss_pred             cccCCceeEEEecccC---chhHHHHHHHHhcCCCcceEEEEeC
Q 038350          335 FQFWQLEHLTLNTGLE---RFELAAIICLLISSPNITTLAISTG  375 (472)
Q Consensus       335 ~~~~~L~~L~l~~~~~---~~~~~~l~~ll~~~p~L~~L~i~~~  375 (472)
                      ....+|+.+.|..+..   ......+...++.+++|++|+++..
T Consensus        99 ~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          99 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3445566555543221   2234567778889999999988665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.93  E-value=0.0033  Score=52.59  Aligned_cols=88  Identities=15%  Similarity=0.036  Sum_probs=59.0

Q ss_pred             CCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--e
Q 038350          158 LPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--T  232 (472)
Q Consensus       158 lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~  232 (472)
                      ++...|....+|++|+|+++.+.   +..+..+++|++|+|+++.+..- -...+.+.+.|++|+|.++. +..+.-  .
T Consensus        45 ~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f  122 (192)
T d1w8aa_          45 SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTLNLYDNQ-ISCVMPGSF  122 (192)
T ss_dssp             CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCEEECCSSC-CCEECTTSS
T ss_pred             ccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCcccccccCCcc-ccccCHHHh
Confidence            44444443338999999887654   45678889999999998876610 01236778999999999864 444322  2


Q ss_pred             eCCCCeeEEEEeecc
Q 038350          233 LRTLGLRKLIVRHCQ  247 (472)
Q Consensus       233 ~~~~~L~~L~l~~c~  247 (472)
                      ..+++|++|.+++..
T Consensus       123 ~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         123 EHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCTTCCEEECTTCC
T ss_pred             cCCcccccccccccc
Confidence            345688888887664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.78  E-value=0.0056  Score=55.90  Aligned_cols=132  Identities=18%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             HHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHH
Q 038350          128 LEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMEN  207 (472)
Q Consensus       128 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~  207 (472)
                      ...++++|++..             .....+|..   .+ +|++|+|+++.+..-+ ..+.+|++|++.++.++  .+  
T Consensus        36 ~~~~l~~LdLs~-------------~~L~~lp~~---~~-~L~~L~Ls~N~l~~lp-~~~~~L~~L~l~~n~l~--~l--   93 (353)
T d1jl5a_          36 LDRQAHELELNN-------------LGLSSLPEL---PP-HLESLVASCNSLTELP-ELPQSLKSLLVDNNNLK--AL--   93 (353)
T ss_dssp             HHHTCSEEECTT-------------SCCSCCCSC---CT-TCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCS--CC--
T ss_pred             HHcCCCEEEeCC-------------CCCCCCCCC---CC-CCCEEECCCCCCcccc-cchhhhhhhhhhhcccc--hh--
Confidence            446888887642             233456753   24 8999999988876211 23578999999988765  12  


Q ss_pred             HHhcC-CCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeec--eEeecCCCceeEEE
Q 038350          208 IAHNC-PFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMV--PFDMRGMDDLEVVV  284 (472)
Q Consensus       208 l~~~c-p~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~--~~~~~~~~~L~~l~  284 (472)
                        ... +.|+.|++.++. +..+.....+++|+.|.+.++..  .......+.+..+.+.....  ...+..++.++.+.
T Consensus        94 --~~lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~  168 (353)
T d1jl5a_          94 --SDLPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY  168 (353)
T ss_dssp             --CSCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred             --hhhccccccccccccc-cccccchhhhccceeeccccccc--cccccccccccchhhccccccccccccccccceecc
Confidence              223 469999999875 44444344567999999988863  22223345666666543211  22344455565555


Q ss_pred             EE
Q 038350          285 LD  286 (472)
Q Consensus       285 l~  286 (472)
                      +.
T Consensus       169 l~  170 (353)
T d1jl5a_         169 AD  170 (353)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.011  Score=47.49  Aligned_cols=66  Identities=21%  Similarity=0.029  Sum_probs=44.5

Q ss_pred             ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350          156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC  223 (472)
Q Consensus       156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  223 (472)
                      ..++...|....+|+.|+|+++.+.   +..|.++++|++|+|+++.++  .+..-+-..+.|+.|+|.+.
T Consensus        45 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~--~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          45 QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE--SLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS--CCCSTTTCSCCCCEEECCSS
T ss_pred             cccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc--ccChhhhccccccccccCCC
Confidence            3455544443339999999998665   556889999999999999876  11111112346888888764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.35  E-value=0.057  Score=43.43  Aligned_cols=131  Identities=9%  Similarity=0.045  Sum_probs=77.6

Q ss_pred             hHHhhcccCCCCcEEEEecc-cccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350          299 DIESLFNPFSDARILQVSTS-ALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGA  376 (472)
Q Consensus       299 ~~~~ll~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~  376 (472)
                      .+..+....++|++|.+++. .+..-.. .... ..+....+|++|++..+. .......+...++..+.|+.|++..+.
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~-~~l~-~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTL-KACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHH-HHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHH-HHHH-HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            45667778889999998753 2211000 0011 223457788999888653 234456777888999999999887663


Q ss_pred             ccCCCCCCCCCCCCCcccccccccccccCccEEEEEee---ecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350          377 IMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGF---TGKICEIDLVKFLLRNSRSIKELNIKQLI  443 (472)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f---~g~~~e~~~~~~ll~~~~~L~~l~i~~~~  443 (472)
                      ..  .         +............+.|+.+.+...   -|.++...+++. ++..+.|+++.+....
T Consensus        86 ~~--~---------~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          86 IS--G---------SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CC--H---------HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             cc--c---------hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCC
Confidence            11  0         000011111125567888887542   233454556654 4678999999987654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.029  Score=45.10  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=42.4

Q ss_pred             HhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-C---chhHHHHHHHHhcCCCcceEE
Q 038350          301 ESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-E---RFELAAIICLLISSPNITTLA  371 (472)
Q Consensus       301 ~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~---~~~~~~l~~ll~~~p~L~~L~  371 (472)
                      ...+..+++|+.|+++++.+..+..      .......+|+.|.+..+- .   .........+++.+|+|+.|+
T Consensus        84 ~~~~~~l~~L~~L~Ls~N~i~~l~~------l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          84 SSIVQKAPNLKILNLSGNELKSERE------LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             GTHHHHSTTCCCCCCTTSCCCCGGG------HHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHHhhCCcccccccccCccccchh------hhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            3456678999999999887765432      111224467888776431 1   123456777889999999885