Citrus Sinensis ID: 038355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
hivtnkellprpvdpkgktskrihFERNVIrevagfapyEKRIDALLKVGKDKRALKLAKRKLCTYERakmkhgemsNVLCRMRatgggkkkk
Flexible Loop (DISEMBL)
hivtnkellprpvdpkgktskrihfernvirevagfapyekRIDALlkvgkdkralkLAKRKLCtyerakmkhgemsnvlcrmratgggkkkk
Low Complexity Region (SEG)
HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDkralklakrklCTYERAKMKHGEMSNVLCRMRATGGGKKKK
Disordered region (IsUnstruct)
**********************IHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERA************************
Disordered Region (DISOPRED)
HIVTN*******************FERNVIREVAGFAPYEKRIDALL*********KLAKRKLCTYERA************************
Disordered Region (DISEMBL)
HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMR*********
Disordered Region (DISPRO)
*******************SKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRATG******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q9M352	112	60S ribosomal protein L36	yes	no	0.956	0.794	0.696	1e-26
O80929	113	60S ribosomal protein L36	no	no	0.956	0.787	0.685	7e-26
Q9LZ57	108	60S ribosomal protein L36	no	no	1.0	0.861	0.655	4e-25
P52866	106	60S ribosomal protein L36	N/A	no	0.849	0.745	0.641	2e-20
Q9LRB8	101	60S ribosomal protein L36	N/A	no	0.956	0.881	0.561	4e-18
Q4PM12	110	60S ribosomal protein L36	N/A	no	0.989	0.836	0.521	1e-16
Q92365	99	60S ribosomal protein L36	yes	no	0.849	0.797	0.493	9e-15
O94658	99	60S ribosomal protein L36	yes	no	0.881	0.828	0.487	7e-14
Q6DER2	105	60S ribosomal protein L36	yes	no	0.860	0.761	0.525	8e-14
Q66KU4	105	60S ribosomal protein L36	N/A	no	0.860	0.761	0.525	8e-14

>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 72/89 (80%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT +EL PRP   KGKTSKR  F RN+I+EVAG APYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGG 89
           RKL T++RAK K  EMS+VL +MR+ GGG
Sbjct: 78  RKLGTHKRAKRKREEMSSVLRKMRSGGGG 106

Arabidopsis thaliana (taxid: 3702)

>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 70/89 (78%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT +EL PRP   KGKTSKR  F R +IREVAG APYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGG 89
           RKL T++RAK K  EMS+VL +MR+ GG 
Sbjct: 78  RKLGTHKRAKRKREEMSSVLRKMRSLGGA 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 73/93 (78%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT +E  PRP + KGKTSKR  F RN+I+EVAG APYEKRI  LLKVGKDKRALK+AK
Sbjct: 14  HVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAK 73

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMS+VL +MR+ G G  +K
Sbjct: 74  RKLGTHKRAKRKREEMSSVLRKMRSGGAGASEK 106

Arabidopsis thaliana (taxid: 3702)

>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 2/81 (2%)

Query: 1  HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
          HIVT KEL PRP D KGKTSKR HF RN+IREVAGF PYEKRI  LLKVGKDKRALK+ +
Sbjct: 18 HIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQ 77

Query: 61 RKLCTYERAKMKHGEMSNVLC 81
           K+   + +K +  E  +V C
Sbjct: 78 EKVGHSQESKEE--ERGDVQC 96

Daucus carota (taxid: 4039)

>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H VT K   PRP   KG  S+R+   R V+REVAG+APYE+R+  LLKVGKDKRALK+ K
Sbjct: 12  HQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCK 71

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGG 89
           RKL T+ R K K  EM+ VL +M+A   G
Sbjct: 72  RKLGTHMRGKKKREEMAGVLRKMQAASKG 100

Enteromorpha compressa (taxid: 63659)

>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 57/92 (61%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H VT  E  PRP   KG  SK   F R++IREV GFAP+E+R   LLKV KDKRALK  K
Sbjct: 15  HKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIK 74

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKK 92
           ++L T+ R K K  E+SNVL   R     K+K
Sbjct: 75  KRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106

Ixodes scapularis (taxid: 6945)

>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36a PE=3 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 59/79 (74%)

Query: 2  IVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKR 61
          ++T ++L  RP   KG+ SKR  F R+++REVAGFAPYE+R+  L++  +DKRA KLAK+
Sbjct: 14 VLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKK 73

Query: 62 KLCTYERAKMKHGEMSNVL 80
          +L T +RAK K  E+++V+
Sbjct: 74 RLGTLKRAKGKIEELTSVI 92

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36b PE=3 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 3  VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRK 62
          +T ++L  RP   KG  SKR  F R+++REVAGFAPYE+R+  L++  +DKRA KLAK++
Sbjct: 15 LTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKR 74

Query: 63 LCTYERAKMKHGEMSNVLCRMR 84
          L T +RAK K  E+++V+   R
Sbjct: 75 LGTLKRAKGKIEELTSVIQSSR 96

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 1  HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
          H VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KDKRALK  K
Sbjct: 15 HRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74

Query: 61 RKLCTYERAKMKHGEMSNVL 80
          +++ T+ RAK K  E+SNVL
Sbjct: 75 KRIGTHIRAKRKREELSNVL 94

Xenopus tropicalis (taxid: 8364)

>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 1  HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
          H VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KDKRALK  K
Sbjct: 15 HRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74

Query: 61 RKLCTYERAKMKHGEMSNVL 80
          +++ T+ RAK K  E+SNVL
Sbjct: 75 KRIGTHIRAKRKREELSNVL 94

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
413968432	108	ribosomal protein L36 [Solanum tuberosum	1.0	0.861	0.795	7e-32
224116904	110	predicted protein [Populus trichocarpa]	1.0	0.845	0.763	2e-30
418731052	110	ribosomal protein L36 [Solanum tuberosum	1.0	0.845	0.752	2e-30
356535863	110	PREDICTED: 60S ribosomal protein L36-3-l	1.0	0.845	0.763	4e-30
356574026	110	PREDICTED: 60S ribosomal protein L36-3 [	1.0	0.845	0.763	4e-30
388500776	110	unknown [Lotus japonicus]	1.0	0.845	0.752	6e-30
374096129	110	60S ribosomal protein L36 [Wolffia austr	1.0	0.845	0.763	1e-29
356575976	110	PREDICTED: 60S ribosomal protein L36-3-l	1.0	0.845	0.752	1e-29
225454218	110	PREDICTED: 60S ribosomal protein L36-3 [	1.0	0.845	0.741	3e-29
297745282	145	unnamed protein product [Vitis vinifera]	1.0	0.641	0.741	3e-29

>gi|413968432|gb|AFW90553.1| ribosomal protein L36 [Solanum tuberosum]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 81/93 (87%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           HIVT KEL PRP D KGKTSKRIHF RN+IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 16  HIVTKKELAPRPSDRKGKTSKRIHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAK 75

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMS+VL +MRATGGG+KKK
Sbjct: 76  RKLGTHKRAKKKREEMSSVLRKMRATGGGEKKK 108

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116904|ref|XP_002317423.1| predicted protein [Populus trichocarpa] gi|222860488|gb|EEE98035.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 79/93 (84%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           HIVT KEL PRP D KGKTSKR+ F R++IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HIVTKKELAPRPSDRKGKTSKRVQFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMSNVL +MRA GGG+KKK
Sbjct: 78  RKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731052|gb|AFX67004.1| ribosomal protein L36 [Solanum tuberosum]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 81/93 (87%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKRIHF R++IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTKKELAPRPSDRKGKTSKRIHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  E+S+VL +MRATGGG+K+K
Sbjct: 78  RKLGTHKRAKRKREEISSVLRKMRATGGGEKEK 110

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535863|ref|XP_003536462.1| PREDICTED: 60S ribosomal protein L36-3-like [Glycine max]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKR+HF RN+IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMSNVL +MRA G G KKK
Sbjct: 78  RKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574026|ref|XP_003555154.1| PREDICTED: 60S ribosomal protein L36-3 [Glycine max]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKR+HF RN+IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMSNVL +MRA G G KKK
Sbjct: 78  RKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500776|gb|AFK38454.1| unknown [Lotus japonicus]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 78/93 (83%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKR+HF R++IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMSNVL +MRA G G KKK
Sbjct: 78  RKLGTHKRAKRKREEMSNVLRKMRAGGAGDKKK 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374096129|gb|AEY84977.1| 60S ribosomal protein L36 [Wolffia australiana]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           HIVT +EL PRP D KGKTSKR+HF RNVIREVAGFAPYEKRI  LLKVGKDKRALKLAK
Sbjct: 18  HIVTKRELPPRPSDRKGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKLAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EM+NVL +MRA G  +KKK
Sbjct: 78  RKLGTHKRAKKKREEMANVLRKMRAAGVSEKKK 110

Source: Wolffia australiana

Species: Wolffia australiana

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575976|ref|XP_003556111.1| PREDICTED: 60S ribosomal protein L36-3-like [Glycine max] gi|356575978|ref|XP_003556112.1| PREDICTED: 60S ribosomal protein L36-3-like isoform 1 [Glycine max] gi|356575980|ref|XP_003556113.1| PREDICTED: 60S ribosomal protein L36-3-like isoform 2 [Glycine max] gi|255645551|gb|ACU23270.1| unknown [Glycine max]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 78/93 (83%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKR+HF RN+IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMS+VL +MRA G G KKK
Sbjct: 78  RKLGTHKRAKKKREEMSSVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454218|ref|XP_002273507.1| PREDICTED: 60S ribosomal protein L36-3 [Vitis vinifera] gi|147820141|emb|CAN64895.1| hypothetical protein VITISV_013224 [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 79/93 (84%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKR+HF RN+IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 18  HVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRITELLKVGKDKRALKVAK 77

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMS+VL +MR+ G G+KKK
Sbjct: 78  RKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745282|emb|CBI40362.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 79/93 (84%)

Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
           H+VT KEL PRP D KGKTSKR+HF RN+IREVAGFAPYEKRI  LLKVGKDKRALK+AK
Sbjct: 53  HVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRITELLKVGKDKRALKVAK 112

Query: 61  RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
           RKL T++RAK K  EMS+VL +MR+ G G+KKK
Sbjct: 113 RKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2084395	112	AT3G53740 [Arabidopsis thalian	1.0	0.830	0.578	4.9e-21
TAIR|locus:2040756	113	AT2G37600 [Arabidopsis thalian	0.946	0.778	0.579	5.7e-20
TAIR|locus:2181758	108	AT5G02450 [Arabidopsis thalian	1.0	0.861	0.548	1.2e-19
UNIPROTKB|Q9Y3U8	105	RPL36 "60S ribosomal protein L	0.967	0.857	0.433	5e-12
UNIPROTKB|F2Z5K6	105	RPL36 "Uncharacterized protein	0.967	0.857	0.433	5e-12
RGD|2322117	105	LOC100360439 "ribosomal protei	0.967	0.857	0.433	5e-12
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.967	0.857	0.433	8.2e-12
UNIPROTKB|Q98TF6	105	RPL36 "60S ribosomal protein L	0.946	0.838	0.431	1.3e-11
RGD|2319728	104	LOC100361644 "ribosomal protei	0.903	0.807	0.440	1.7e-11
RGD|2320881	104	LOC100361079 "ribosomal protei	0.903	0.807	0.440	1.7e-11

TAIR|locus:2084395 AT3G53740 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/95 (57%), Positives = 65/95 (68%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H+VT +EL PRP   KGKTSKR  F RN+I+EVAG APYEKRI  LLKVGKD        
Sbjct:    18 HVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAK 77

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGGG--KKKK 93
                 T++RAK K  EMS+VL +MR+ GGG  +KKK
Sbjct:    78 RKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2040756 AT2G37600 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 51/88 (57%), Positives = 59/88 (67%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H+VT +EL PRP   KGKTSKR  F R +IREVAG APYEKRI  LLKVGKD        
Sbjct:    18 HVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAK 77

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGG 88
                 T++RAK K  EMS+VL +MR+ GG
Sbjct:    78 RKLGTHKRAKRKREEMSSVLRKMRSLGG 105

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2181758 AT5G02450 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 51/93 (54%), Positives = 62/93 (66%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H+VT +E  PRP + KGKTSKR  F RN+I+EVAG APYEKRI  LLKVGKD        
Sbjct:    14 HVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAK 73

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
                 T++RAK K  EMS+VL +MR+ G G  +K
Sbjct:    74 RKLGTHKRAKRKREEMSSVLRKMRSGGAGASEK 106

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q9Y3U8 RPL36 "60S ribosomal protein L36" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 39/90 (43%), Positives = 47/90 (52%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KD        
Sbjct:    15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGGGK 90
                 T+ RAK K  E+SNVL  MR     K
Sbjct:    75 KRVGTHIRAKRKREELSNVLAAMRKAAAKK 104

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5K6 RPL36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 39/90 (43%), Positives = 47/90 (52%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KD        
Sbjct:    15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGGGK 90
                 T+ RAK K  E+SNVL  MR     K
Sbjct:    75 KRVGTHIRAKRKREELSNVLAAMRKAAAKK 104

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2322117 LOC100360439 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 39/90 (43%), Positives = 47/90 (52%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KD        
Sbjct:    15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGGGK 90
                 T+ RAK K  E+SNVL  MR     K
Sbjct:    75 KKVGTHIRAKRKREELSNVLAAMRKAAAKK 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 39/90 (43%), Positives = 47/90 (52%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KD        
Sbjct:    15 HKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74

Query:    61 XXXCTYERAKMKHGEMSNVLCRMRATGGGK 90
                 T+ RAK K  E+SNVL  MR     K
Sbjct:    75 KRVGTHIRAKRKREELSNVLAAMRKAAAKK 104

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q98TF6 RPL36 "60S ribosomal protein L36" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 38/88 (43%), Positives = 46/88 (52%)

Query:     3 VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXXXX 62
             VT     PR    +G+ +K   F R++IREV GFAPYE+R   LLKV KD          
Sbjct:    17 VTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKR 76

Query:    63 XCTYERAKMKHGEMSNVLCRMRATGGGK 90
               T+ RAK K  E+SNVL  MR     K
Sbjct:    77 VGTHIRAKRKREELSNVLAAMRKAAAKK 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/84 (44%), Positives = 46/84 (54%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H VT     PR    +G+ +K   F R++IREV GFAPY++R   LLKV KD        
Sbjct:    15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIK 74

Query:    61 XXXCTYERAKMKHGEMSNVLCRMR 84
                 T+ RAK K  E+SNVL  MR
Sbjct:    75 KRVGTHIRAKRKREELSNVLAAMR 98

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2320881 LOC100361079 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/84 (44%), Positives = 46/84 (54%)

Query:     1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
             H VT     PR    +G+ +K   F R++IREV GFAPY++R   LLKV KD        
Sbjct:    15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIK 74

Query:    61 XXXCTYERAKMKHGEMSNVLCRMR 84
                 T+ RAK K  E+SNVL  MR
Sbjct:    75 KRVGTHIRAKRKREELSNVLAAMR 98

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T171	RL36_BOVIN	No assigned EC number	0.525	0.8602	0.7619	yes	no
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.525	0.8602	0.7619	yes	no
P39032	RL36_RAT	No assigned EC number	0.5125	0.8602	0.7619	yes	no
Q6DER2	RL36_XENTR	No assigned EC number	0.525	0.8602	0.7619	yes	no
Q98TF6	RL36_CHICK	No assigned EC number	0.5256	0.8387	0.7428	yes	no
Q9LRB8	RL36_ENTCP	No assigned EC number	0.5617	0.9569	0.8811	N/A	no
Q5RAZ9	RL36_PONAB	No assigned EC number	0.525	0.8602	0.7619	yes	no
O94658	RL36B_SCHPO	No assigned EC number	0.4878	0.8817	0.8282	yes	no
P49181	RL36_CAEEL	No assigned EC number	0.4285	0.9032	0.8076	yes	no
Q4PM12	RL36_IXOSC	No assigned EC number	0.5217	0.9892	0.8363	N/A	no
P05745	RL36A_YEAST	No assigned EC number	0.4024	0.8817	0.82	yes	no
O14455	RL36B_YEAST	No assigned EC number	0.4024	0.8817	0.82	yes	no
Q9M352	RL362_ARATH	No assigned EC number	0.6966	0.9569	0.7946	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	4e-28
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	2e-20
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	1e-12

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score = 96.9 bits (242), Expect = 4e-28
 Identities = 53/84 (63%), Positives = 61/84 (72%)

Query: 1  HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
          H VT +   PRP   KGK SKR  F R++IREVAGFAPYEKR+  LLKVGKDKRALK AK
Sbjct: 10 HKVTKRPRKPRPSRRKGKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGKDKRALKFAK 69

Query: 61 RKLCTYERAKMKHGEMSNVLCRMR 84
          ++L T+ RAK K  E+SNVL   R
Sbjct: 70 KRLGTHRRAKRKREELSNVLAAQR 93

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score = 77.4 bits (191), Expect = 2e-20
 Identities = 45/85 (52%), Positives = 56/85 (65%)

Query: 1  HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
          HIVT +   P P   KG  SKR    ++VIREV GF+PYE+R+  LLKVGKDKRALK AK
Sbjct: 13 HIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAK 72

Query: 61 RKLCTYERAKMKHGEMSNVLCRMRA 85
          ++L T++RAK K  E+   L   R 
Sbjct: 73 KRLGTHKRAKAKRDEIQEALRAQRK 97

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 58.0 bits (140), Expect = 1e-12
 Identities = 35/78 (44%), Positives = 56/78 (71%)

Query: 3  VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRK 62
          VT ++   RP   KG+ SKR  F R+++RE+AG +PYE+R+  L++  +DKRA KLAK++
Sbjct: 17 VTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKR 76

Query: 63 LCTYERAKMKHGEMSNVL 80
          L + +RAK K  E+++V+
Sbjct: 77 LGSLKRAKAKVEELTSVI 94

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	100.0
PTZ00196	98	60S ribosomal protein L36; Provisional	100.0
KOG3452	102	consensus 60S ribosomal protein L36 [Translation,	100.0
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	99.97

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.3e-47  Score=263.77  Aligned_cols=86  Identities=59%  Similarity=0.805  Sum_probs=75.7

Q ss_pred             CccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 038355            1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVL   80 (93)
Q Consensus         1 h~vtk~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl   80 (93)
                      |+||+|+++||||+++|.+|+|++||||||+|||||||||+++||||++|+||+||||+|+|||||+|||+|+|||+|||
T Consensus        13 h~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~RAKrKrEel~~vl   92 (98)
T PF01158_consen   13 HKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRAKRKREELSNVL   92 (98)
T ss_dssp             -----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 038355           81 CRMRAT   86 (93)
Q Consensus        81 ~~~Rk~   86 (93)
                      ++||++
T Consensus        93 ~~~rk~   98 (98)
T PF01158_consen   93 AAMRKA   98 (98)
T ss_dssp             HHHHH-
T ss_pred             HHHhcC
Confidence            999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=100.00  E-value=4.1e-47  Score=261.63  Aligned_cols=85  Identities=53%  Similarity=0.763  Sum_probs=84.3

Q ss_pred             CccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 038355            1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVL   80 (93)
Q Consensus         1 h~vtk~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl   80 (93)
                      |+||+++++||||+++|.+|+|++||||||+|||||||||+++||||++|+||+||||+|+|||||+|||+|+|||++||
T Consensus        13 h~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~RaK~Kreel~~vl   92 (98)
T PTZ00196         13 HIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEIQEAL   92 (98)
T ss_pred             cccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 038355           81 CRMRA   85 (93)
Q Consensus        81 ~~~Rk   85 (93)
                      ++||+
T Consensus        93 ~~~rk   97 (98)
T PTZ00196         93 RAQRK   97 (98)
T ss_pred             HHHhc
Confidence            99997

>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-45  Score=252.15  Aligned_cols=88  Identities=58%  Similarity=0.781  Sum_probs=86.3

Q ss_pred             CccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 038355            1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVL   80 (93)
Q Consensus         1 h~vtk~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl   80 (93)
                      |+||++++.||+|+++|.+|+||+||+|||+|||||||||+++||||++|+||+|+||+|+|||||+||++|+|||+|||
T Consensus        15 h~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RAk~KrEELsnvl   94 (102)
T KOG3452|consen   15 HKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRAKRKREELSNVL   94 (102)
T ss_pred             chhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccc
Q 038355           81 CRMRATGG   88 (93)
Q Consensus        81 ~~~Rk~~a   88 (93)
                      ++||++++
T Consensus        95 ~~~rk~~~  102 (102)
T KOG3452|consen   95 AAMRKAHA  102 (102)
T ss_pred             HHHHhccC
Confidence            99999764

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.3e-30  Score=178.63  Aligned_cols=81  Identities=43%  Similarity=0.690  Sum_probs=79.3

Q ss_pred             ccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 038355            2 IVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLC   81 (93)
Q Consensus         2 ~vtk~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl~   81 (93)
                      +||++.+.+|||.++|.+|+|+.||+++++|++||+|||+++||||.+|.|++|.|+++||||+|+||+.|.|||.++|+
T Consensus        16 kvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAkaKvEel~~~i~   95 (97)
T COG5051          16 KVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAKAKVEELTSVIQ   95 (97)
T ss_pred             eeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             H
Q 038355           82 R   82 (93)
Q Consensus        82 ~   82 (93)
                      +
T Consensus        96 ~   96 (97)
T COG5051          96 S   96 (97)
T ss_pred             c
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		2e-24
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-07
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		4e-07

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 64/89 (71%)
Query: 1   HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXX 60
           H+VT +EL PRP D KGK +KR+HF RN+IREVAGFAPYEKRI  LLKVGKD        
Sbjct: 18  HVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAK 77
Query: 61  XXXCTYERAKMKHGEMSNVLCRMRATGGG 89
               T++RAK K  EMS+VL +MR+ GGG
Sbjct: 78  RKLGTHKRAKKKREEMSSVLRKMRSAGGG 106

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 PVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVG--KDXXXXXXXXXXXC-TYER 68
           V  KGK  KR+   R VIREV GFAPYEKRI  L+K G  KD             T+ R
Sbjct: 27 AVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRR 86
Query: 69 AKMK 72
          AK+K
Sbjct: 87 AKVK 90

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 3  VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDXXXXXXXXXX 62
          VT+    P+    KG  S R  F R+++RE+AG +PYE+R+  L++   +          
Sbjct: 17 VTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKR 76
Query: 63 XCTYERAKMKHGEMSNVLCRMR 84
            ++ RAK K  EM+N++   R
Sbjct: 77 LGSFTRAKAKVEEMNNIIAASR 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	2e-20
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	8e-20
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	2e-15

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 64.6 bits (157), Expect = 2e-15
 Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 1   HIVTNKELL---PRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGK---DKR 54
            I T  E        V  KGK  KR+   R VIREV GFAPYEKRI  L+K G     K+
Sbjct: 13  FITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKK 72

Query: 55  ALKLAKRKLCTYERAKMKHGEMSNVLCRMR 84
           A K+A+++L T+ RAK+K   +   +   R
Sbjct: 73  ATKIARKRLGTHRRAKVKKALLEEAVRAQR 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	100.0
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	100.0
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	100.0

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=100.00  E-value=2e-47  Score=264.48  Aligned_cols=85  Identities=45%  Similarity=0.628  Sum_probs=84.0

Q ss_pred             Cccc---cCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcc---hhhHHHHHHHhhhhhHHHHHHHH
Q 038355            1 HIVT---NKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGK---DKRALKLAKRKLCTYERAKMKHG   74 (93)
Q Consensus         1 h~vt---k~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~k---dKrAlKf~KKrlGth~RAKrK~e   74 (93)
                      |+||   +|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+   ||+||||+|+|||||+|||+|+|
T Consensus        13 hkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKre   92 (104)
T 4a18_Q           13 FITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKA   92 (104)
T ss_dssp             CCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred             cccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHH
Confidence            8899   99999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 038355           75 EMSNVLCRMRA   85 (93)
Q Consensus        75 el~~vl~~~Rk   85 (93)
                      ||+|||++||+
T Consensus        93 el~~vl~~~Rk  103 (104)
T 4a18_Q           93 LLEEAVRAQRK  103 (104)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00