Citrus Sinensis ID: 038396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIRRN
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHccHHccccccccccccccccccccccccccccEEEEEEEEEEEccEEEEccccccEEEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHccccccEEEEcccccccccccccccccccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEccccccccccccccHccccccEEEEEccccccccccHHHHHccHcccEEEcccccccccccccHccccccHHHHHHHHccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
ihgkipkwlldpsmqYLNALNLSHNLltssnnlqgplpvpppetiLYLVsnnsltgeipswicnLNTVKNLVLSHnnlsgvlpqclgnfsdELSVLDlqgnnffgtipdtfikesrlgvidlshnlfqgriprslvncsklefldlgnnqisdtfpswlgtipnlnvliLRSNkfygiikeprtdcrfskLHIIdlsnnrftgklpsksflCLDAMKIVNTSQLRYLQDvispygqvstdlisTYDYSLImnskgrmmtynkipDILTGiilssnrfdrviptsianlkglqvlnldnnnlqghipsclgnltnlesldlsnnrfsgqipqqlVEFTfleffdvsdnyltgaiplgkqfatfdntsfdgnsglcgrplskgcesdearanedhtegseeslfsgafdWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIRRN
Flexible Loop (DISEMBL)
ihgkipkwlldPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDlsnnrftgklpsKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARanedhtegseeslFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQqiatrkkgirrn
Low Complexity Region (SEG)
IHGKIPKWLLDPSMQYlnalnlshnlltssnnlQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGlqvlnldnnnlqGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIRRN
Disordered region (IsUnstruct)
******KWLLDPSMQYLNALNLSHNLLT*************PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGN*GL***************************LFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQI**********
Disordered Region (DISOPRED)
IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPL**************************AFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKK*****
Disordered Region (DISEMBL)
IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLS********************SLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIRRN
Disordered Region (DISPRO)
*HGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGC*********************GAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.923	0.497	0.364	3e-69
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.760	0.334	0.331	1e-35
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.811	0.306	0.312	1e-34
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.780	0.340	0.306	2e-34
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.813	0.307	0.334	2e-34
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.657	0.240	0.336	2e-34
Q9LHP4	1141	Receptor-like protein kin	no	no	0.673	0.269	0.341	5e-34
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.653	0.408	0.333	5e-34
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.833	0.375	0.308	7e-34
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.730	0.265	0.330	8e-34

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 238/450 (52%), Gaps = 29/450 (6%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLV--SNNSLTGEI 58
           + G++P  L       LN + LSHN  +S  N          E ++  +  ++NS  G I
Sbjct: 411 LEGEVPACLWR-----LNTMVLSHNSFSSFEN------TSQEEALIEELDLNSNSFQGPI 459

Query: 59  PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG 118
           P  IC L+++  L LS+N  SG +P C+ NFS  +  L+L  NNF GT+PD F K + L 
Sbjct: 460 PYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELV 519

Query: 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
            +D+SHN  +G+ P+SL+NC  LE +++ +N+I D FPSWL ++P+L+VL LRSNKFYG 
Sbjct: 520 SLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGP 579

Query: 179 IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVS 238
           +        F  L IID+S+N F+G LP   F     M  +     +Y+ +         
Sbjct: 580 LYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWR------ 633

Query: 239 TDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDN 298
                +Y + + M +KG  M++ +I      I  S N+ +  IP S+  LK L+VLNL  
Sbjct: 634 --YADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSG 691

Query: 299 NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQ 358
           N     IP  L NLT LE+LD+S N+ SGQIPQ L   +FL + + S N L G +P G Q
Sbjct: 692 NAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQ 751

Query: 359 FATFDNTSFDGNSGLCGRP---LSKGCESDEARANEDHTEGSEESLFSGAFDWKIILIGY 415
           F     +SF  N GL G        G  +  ++  ED +E  E       F+W    I Y
Sbjct: 752 FQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEE-----NMFNWVAAAIAY 806

Query: 416 AGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445
             G++ GLV+G  ++S    WF +K G +Q
Sbjct: 807 GPGVLCGLVIGHFYTSHNHEWFTEKFGRKQ 836

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 171/395 (43%), Gaps = 48/395 (12%)

Query: 18  NALNLSHNLLTSSNNLQGPLPVPPPETILYLV---SNNSLTGEIPSWICNLNTVKNLVLS 74
           N   L H L  SSN   G  P    +     V    NNSL+G I         +  L L+
Sbjct: 278 NLTQLEH-LDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLA 336

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF----------------------- 111
            N+ SG LP  LG+   ++ +L L  N F G IPDTF                       
Sbjct: 337 SNHFSGPLPDSLGH-CPKMKILSLAKNEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSETM 395

Query: 112 --IKESR-LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168
             ++  R L  + LS N     IP ++     L  L LGN  +    PSWL     L VL
Sbjct: 396 NVLQHCRNLSTLILSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVL 455

Query: 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ 228
            L  N FYG I  P    +   L  ID SNN  TG +P            V  ++L+ L 
Sbjct: 456 DLSWNHFYGTI--PHWIGKMESLFYIDFSNNTLTGAIP------------VAITELKNLI 501

Query: 229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL 288
            +     Q++    S     +  N     + YN++      I L++NR +  I   I  L
Sbjct: 502 RLNGTASQMTDS--SGIPLYVKRNKSSNGLPYNQVSRFPPSIYLNNNRLNGTILPEIGRL 559

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348
           K L +L+L  NN  G IP  +  L NLE LDLS N   G IP      TFL  F V+ N 
Sbjct: 560 KELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNR 619

Query: 349 LTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCE 383
           LTGAIP G QF +F ++SF+GN GLC R +   C+
Sbjct: 620 LTGAIPSGGQFYSFPHSSFEGNLGLC-RAIDSPCD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 202/451 (44%), Gaps = 81/451 (17%)

Query: 29  SSNNLQGPLPVPPPETILYL-------VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV 81
           S+NN  G LPV   +T+L L       +S N   G +P    NL  ++ L +S NNL+G+
Sbjct: 360 SNNNFSGKLPV---DTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGI 416

Query: 82  LPQCL-GNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 140
           +P  +  +  + L VL LQ N F G IPD+    S+L  +DLS N   G IP SL + SK
Sbjct: 417 IPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSK 476

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDC-------------- 186
           L+ L L  NQ+S   P  L  +  L  LIL  N   G I    ++C              
Sbjct: 477 LKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLS 536

Query: 187 --------RFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKI-VNTSQLRYLQDVISP---- 233
                   R S L I+ L NN  +G +P++   C   + + +NT+   +L   I P    
Sbjct: 537 GEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTN---FLNGSIPPPLFK 593

Query: 234 -YGQVSTDLISTYDYSLIMN-------SKGRMMTYNKIPD----------------ILTG 269
             G ++  L++   Y  I N         G ++ +  I                  +  G
Sbjct: 594 QSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRG 653

Query: 270 II--------------LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL 315
           I               LS N+ +  IP  +  +  L +LNL +N+L G IP  LG L N+
Sbjct: 654 ITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNV 713

Query: 316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCG 375
             LDLS NRF+G IP  L   T L   D+S+N L+G IP    F TF +  F  NS LCG
Sbjct: 714 AILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNS-LCG 772

Query: 376 RPLSKGCESD-EARANEDHTEGSEESLFSGA 405
            PL   C S  ++ AN+       ++  +G+
Sbjct: 773 YPLPLPCSSGPKSDANQHQKSHRRQASLAGS 803

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 191/430 (44%), Gaps = 74/430 (17%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLP---------------------- 38
           + G+IP     P +  + AL+    L   +N L GP+P                      
Sbjct: 274 LSGEIP-----PEIGNMTALD---TLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGS 325

Query: 39  VPPP----ETILYL-VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93
           +PP     E+++ L +S N LTG +P     L  ++ L L  N LSG +P  + N S EL
Sbjct: 326 IPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN-STEL 384

Query: 94  SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
           +VL L  NNF G +PDT  +  +L  + L  N F+G +P+SL +C  L  +    N  S 
Sbjct: 385 TVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSG 444

Query: 154 TFPSWLGTIPNLNVLILRSNKFYGIIKE----------------------PRTDCRFSKL 191
                 G  P LN + L +N F+G +                        P      ++L
Sbjct: 445 DISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQL 504

Query: 192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ---DVISPYGQVSTDLISTYDYS 248
             +DLS+NR TG+LP           I N +++  LQ   + +S        L++  +Y 
Sbjct: 505 SQLDLSSNRITGELPES---------ISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYL 555

Query: 249 LIMNSKGRMM---TYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
            + +++       T N +P  L  + LS N  D+ IP  +  L  LQ+L+L  N L G I
Sbjct: 556 DLSSNRFSSEIPPTLNNLPR-LYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEI 614

Query: 306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNT 365
            S   +L NLE LDLS+N  SGQIP    +   L   DVS N L G IP    F      
Sbjct: 615 SSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPD 674

Query: 366 SFDGNSGLCG 375
           +F+GN  LCG
Sbjct: 675 AFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 192/401 (47%), Gaps = 30/401 (7%)

Query: 29  SSNNLQGPLP---VPPPE---TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82
           SSNNL G +P      P     +LYL  NN   G IP  + N + + +L LS N L+G +
Sbjct: 409 SSNNLTGVIPSGICKDPMNNLKVLYL-QNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSI 467

Query: 83  PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE 142
           P  LG+ S +L  L L  N   G IP   +    L  + L  N   G IP SL NC+KL 
Sbjct: 468 PSSLGSLS-KLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLN 526

Query: 143 FLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202
           ++ L NNQ+S   P+ LG + NL +L L +N   G I     +C+   L  +DL+ N   
Sbjct: 527 WISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ--SLIWLDLNTNFLN 584

Query: 203 GKLPSKSFLCLDAMKIVNTSQLRYL------------QDVISPYG---QVSTDLIST-YD 246
           G +P   F     + +   +  RY+               +  +G   Q   D IST + 
Sbjct: 585 GSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHP 644

Query: 247 YSLIMNSKG-RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
            +     +G    T+N    ++  + LS N+ +  IP  +  +  L +LNL +N+L G I
Sbjct: 645 CNFTRVYRGITQPTFNHNGSMIF-LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMI 703

Query: 306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNT 365
           P  LG L N+  LDLS NRF+G IP  L   T L   D+S+N L+G IP    F TF + 
Sbjct: 704 PQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDY 763

Query: 366 SFDGNSGLCGRPLSKGCESD-EARANEDHTEGSEESLFSGA 405
            F  NS LCG PL   C S  ++ AN+       ++  +G+
Sbjct: 764 RFANNS-LCGYPLPIPCSSGPKSDANQHQKSHRRQASLAGS 803

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 171/357 (47%), Gaps = 57/357 (15%)

Query: 48  LVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL-PQC--------------------- 85
           ++ NNSL G +P  + +L  +  + LSHN L+G + P C                     
Sbjct: 534 MLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPL 593

Query: 86  -LGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 144
            LGN S  L  L L  N   G IP T  K   L ++D+S N   G IP  LV C KL  +
Sbjct: 594 ELGN-SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHI 652

Query: 145 DLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK 204
           DL NN +S   P WLG +  L  L L SN+F   +     +C  +KL ++ L  N   G 
Sbjct: 653 DLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC--TKLLVLSLDGNSLNGS 710

Query: 205 LPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP 264
           +P +    L A+ ++N  + ++   +    G++S      Y+  L  NS           
Sbjct: 711 IP-QEIGNLGALNVLNLDKNQFSGSLPQAMGKLS----KLYELRLSRNS----------- 754

Query: 265 DILTGIILSSNRFDRVIPTSIANLKGLQ-VLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
             LTG           IP  I  L+ LQ  L+L  NN  G IPS +G L+ LE+LDLS+N
Sbjct: 755 --LTG----------EIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHN 802

Query: 324 RFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSK 380
           + +G++P  + +   L + +VS N L G   L KQF+ +   SF GN+GLCG PLS+
Sbjct: 803 QLTGEVPGSVGDMKSLGYLNVSFNNLGGK--LKKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 167/334 (50%), Gaps = 27/334 (8%)

Query: 43  ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN 102
           E +   +  NSL+G IP  I  L  ++ L L  N+L G +P+ +GN S+ L ++DL  N 
Sbjct: 275 ELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSN-LKMIDLSLNL 333

Query: 103 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162
             G+IP +  + S L    +S N F G IP ++ NCS L  L L  NQIS   PS LGT+
Sbjct: 334 LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTL 393

Query: 163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIV--- 219
             L +    SN+  G I     DC  + L  +DLS N  TG +PS  F+  +  K++   
Sbjct: 394 TKLTLFFAWSNQLEGSIPPGLADC--TDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLIS 451

Query: 220 ------------NTSQLRYLQDVISPY-GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI 266
                       N S L  L+   +   G++ + + S    + +  S  R+  + K+PD 
Sbjct: 452 NSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRL--HGKVPDE 509

Query: 267 ------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 320
                 L  I LS+N  +  +P  +++L GLQVL++  N   G IP+ LG L +L  L L
Sbjct: 510 IGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLIL 569

Query: 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
           S N FSG IP  L   + L+  D+  N L+G IP
Sbjct: 570 SKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIP 603

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 163/351 (46%), Gaps = 53/351 (15%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHN---NLSGVLPQCLGNFSDELSVLDLQGNNFFGT 106
           + N LTGEI   +  L ++  + LS N   N++G L    G    +LS L L  N +  T
Sbjct: 398 AGNKLTGEISPQVLELESLSFMGLSDNKLTNITGALSILQG--CRKLSTLILAKNFYDET 455

Query: 107 IP--DTFIKES---RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           +P  + F+      +L +  +     +G IP  L+N +K+E +DL  N+   + P WLGT
Sbjct: 456 VPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGT 515

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
           +P+L         FY                 +DLS+N  TG+LP K    L A+     
Sbjct: 516 LPDL---------FY-----------------LDLSDNLLTGELP-KELFQLRALMSQKI 548

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
           ++  YL+  I                 L  N+      YNK+      I +  N     I
Sbjct: 549 TENNYLELPIF----------------LNPNNVTTNQQYNKLYSFPPTIYIRRNNLTGSI 592

Query: 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           P  +  LK L +L L  NNL G IP  L NLTNLE LDLSNN  SG IP  L    FL +
Sbjct: 593 PVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSY 652

Query: 342 FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANED 392
           F+V++N L G IP   QF TF   +F+GN  LCG  L   C+   A+ N++
Sbjct: 653 FNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRAKENDE 703

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  145 bits (366), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 208/444 (46%), Gaps = 64/444 (14%)

Query: 31  NNLQGPLPVPPPE-----TILYL-VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ 84
           N  +GP+P   PE     ++ YL ++   L+GEIPS +  L +++ L+L  NN +G +P+
Sbjct: 222 NEFKGPIP---PEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPR 278

Query: 85  CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 144
            +G+ +  L VLD   N   G IP    K   L +++L  N   G IP ++ + ++L+ L
Sbjct: 279 EIGSIT-TLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVL 337

Query: 145 DLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK 204
           +L NN +S   PS LG    L  L + SN F G I  P T C    L  + L NN FTG+
Sbjct: 338 ELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEI--PSTLCNKGNLTKLILFNNTFTGQ 395

Query: 205 LPSKSFLCLDAMKI------------VNTSQLRYLQDVISP----YGQVSTDLISTYDYS 248
           +P+    C   +++            +   +L  LQ +        G +  D+  +   S
Sbjct: 396 IPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLS 455

Query: 249 LIMNSKGRMMTY----------------------NKIPD------ILTGIILSSNRFDRV 280
            I  S+ ++ +                        ++PD       L+ + LSSN     
Sbjct: 456 FIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGT 515

Query: 281 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
           IP+SIA+ + L  LNL NNNL G IP  +  ++ L  LDLSNN  +G +P+ +     LE
Sbjct: 516 IPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPALE 575

Query: 341 FFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEES 400
             +VS N LTG +P+     T +     GNSGLCG  L   C S   RA   H+    + 
Sbjct: 576 LLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPP-C-SKFQRATSSHSSLHGKR 633

Query: 401 LFSGAFDWKIILIGYAGGLVTGLV 424
           + +G   W   LIG A  L  G++
Sbjct: 634 IVAG---W---LIGIASVLALGIL 651

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 182/387 (47%), Gaps = 54/387 (13%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-------VSNNS 53
           + G IP      S  +L AL L    +  +N+LQG LP    ++++ L        S+N 
Sbjct: 517 LSGSIPS-----SFGFLTALEL---FMIYNNSLQGNLP----DSLINLKNLTRINFSSNK 564

Query: 54  LTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIK 113
             G I S +C  ++  +  ++ N   G +P  LG  S  L  L L  N F G IP TF K
Sbjct: 565 FNGSI-SPLCGSSSYLSFDVTENGFEGDIPLELGK-STNLDRLRLGKNQFTGRIPRTFGK 622

Query: 114 ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
            S L ++D+S N   G IP  L  C KL  +DL NN +S   P+WLG +P L  L L SN
Sbjct: 623 ISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSN 682

Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP 233
           KF G +  P      + +  + L  N   G +P +    L A+  +N  + +    + S 
Sbjct: 683 KFVGSL--PTEIFSLTNILTLFLDGNSLNGSIP-QEIGNLQALNALNLEENQLSGPLPST 739

Query: 234 YGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ- 292
            G++S                            L  + LS N     IP  I  L+ LQ 
Sbjct: 740 IGKLSK---------------------------LFELRLSRNALTGEIPVEIGQLQDLQS 772

Query: 293 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGA 352
            L+L  NN  G IPS +  L  LESLDLS+N+  G++P Q+ +   L + ++S N L G 
Sbjct: 773 ALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK 832

Query: 353 IPLGKQFATFDNTSFDGNSGLCGRPLS 379
             L KQF+ +   +F GN+GLCG PLS
Sbjct: 833 --LKKQFSRWQADAFVGNAGLCGSPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
359485824	973	PREDICTED: receptor-like protein 12-like	0.980	0.459	0.525	1e-121
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.975	0.231	0.481	1e-113
359490156	886	PREDICTED: receptor-like protein 12-like	0.986	0.507	0.498	1e-113
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.973	0.258	0.483	1e-112
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.975	0.228	0.486	1e-111
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.971	0.441	0.493	1e-110
224140517	979	predicted protein [Populus trichocarpa]	0.949	0.442	0.485	1e-109
147766212	925	hypothetical protein VITISV_018438 [Viti	0.934	0.460	0.511	1e-108
224140511	894	predicted protein [Populus trichocarpa]	0.947	0.483	0.482	1e-107
224140505	993	predicted protein [Populus trichocarpa]	0.947	0.435	0.478	1e-107

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/474 (52%), Positives = 303/474 (63%), Gaps = 27/474 (5%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTS-------------------SNNLQGPLPVPP 41
           IHG IPKW+ + S + L  L LS N LT                    SN LQGPLPVPP
Sbjct: 500 IHGPIPKWVWNISKETLVTLELSENFLTGFDQRPFVLPWSKLHTLRLDSNMLQGPLPVPP 559

Query: 42  PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
           P T+ YLVS N LTGEI   ICN+ +++ L LS NNLSG +PQCL NFS  L VLDL  N
Sbjct: 560 PSTVEYLVSGNKLTGEISPLICNMTSLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSN 619

Query: 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           +  G IP+       L VIDL  N FQG+IPRSLVNC+ LE L LGNN+I+D FP WLG 
Sbjct: 620 SLDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGA 679

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN- 220
           +P L VLILRSN+F+G I    T+ RF KL IIDLS+N F G LPS+ F   DAMK+ + 
Sbjct: 680 LPQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDI 739

Query: 221 TSQLRYLQDVISPYGQVSTD-LISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR 279
            S LRY+Q  ISP   +  + +I+ Y YS+ M +KG    Y +I D    I  S N F  
Sbjct: 740 ASGLRYMQ--ISPMIDLKNNVMITGYMYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKG 797

Query: 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL 339
            IPTSI +LKG+ +LNL  N+L GHIPS LGNLT LESLDLS N+ SG+IP QL   TFL
Sbjct: 798 QIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFL 857

Query: 340 EFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEE 399
           EFF+VS N+LTG IP GKQFATF+N SFDGN GLCG PLS+ C S EA      T  S +
Sbjct: 858 EFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSRECGSSEALPP---TSSSSK 914

Query: 400 SLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIA-TRKKG 452
              +  FDWKI+L+GY  GL+ G+ +G+  +S    WF+  +G +Q   TRK+G
Sbjct: 915 QGSTTKFDWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFVKTIGKRQRKWTRKEG 968

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/465 (48%), Positives = 291/465 (62%), Gaps = 20/465 (4%)

Query: 1    IHGKIPKWLLDPSMQYLNALNLSHNLLT-------------------SSNNLQGPLPVPP 41
            IHG+IPKW+ +   + L  ++LS+NLLT                   S N LQG LPVPP
Sbjct: 1457 IHGQIPKWMWNMGKETLWVMDLSNNLLTXFEQAPVVLPWITLRVLELSYNQLQGSLPVPP 1516

Query: 42   PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
                 Y V NN L G+ PS IC+L+ +  L LS+NNLSG++PQCL + SD LSVL+L+GN
Sbjct: 1517 XSISDYFVHNNRLNGKXPSLICSLHHLHILDLSNNNLSGMIPQCLXDSSDSLSVLNLRGN 1576

Query: 102  NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
            NF G+IP TF  + RL +ID S+N  +G+IPRSL NC + E L+LGNNQI+DTFP WLG+
Sbjct: 1577 NFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRSLXNCKEXEILNLGNNQINDTFPFWLGS 1636

Query: 162  IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
            +P L +LILR N+F+G I+ PR +  F  L IIDLS N F G LP+  FL   AM  V+ 
Sbjct: 1637 LPELQLLILRHNRFHGAIESPRANFEFPTLCIIDLSYNXFAGNLPAGYFLTWVAMSRVDE 1696

Query: 222  SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
                Y+Q +       +  L   Y+YS+ M +KG    Y KIP     I LSSN+F   I
Sbjct: 1697 EHFSYMQSMTGFVLIRTYRLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEI 1756

Query: 282  PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
            P SI  L+GL +LN+ +N+L GHIPS LGNL  LE+LDLS N  SG+IPQQL   TFLEF
Sbjct: 1757 PKSIGKLRGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEF 1816

Query: 342  FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESL 401
            F+VS N+L G IP GKQF TF N S++GN GLCG PLSK C + ++ A+   T      L
Sbjct: 1817 FNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGLCGNPLSKECGNSKSTASSPPTYKHGGDL 1876

Query: 402  FSG-AFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445
             SG   +  I+L+GY  GLV G+ +G+  ++    WF+   G +Q
Sbjct: 1877 ESGRKVELMIVLMGYGSGLVVGMAIGYTLTTRKHEWFVKTFGKRQ 1921

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/477 (49%), Positives = 290/477 (60%), Gaps = 27/477 (5%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTS-------------------SNNLQGPLPVPP 41
           IHG IPKW+ + S + L +L+LS NLLT                    SN LQGPLP+PP
Sbjct: 413 IHGPIPKWMWNISQENLESLDLSGNLLTGFNQHPVVLPWSKLSILELDSNMLQGPLPIPP 472

Query: 42  PETILYL-VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQG 100
           P TI Y  VS N L GEI   ICN++++  L LS NNLSG +PQCL N S  L +LDL  
Sbjct: 473 PSTIEYYSVSRNKLIGEISPLICNMSSLILLDLSSNNLSGRIPQCLANLSKSLFILDLGS 532

Query: 101 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 160
           NN  G IP T    + L VIDL  N FQG+IPRS  NC  LE L LGNNQI D FP WLG
Sbjct: 533 NNLDGPIPQTCTVPNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLG 592

Query: 161 TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
            +P L VLILRSN+F+G I    ++ RF KL I+DLS+N+F G LPS+ F   DAMK+ +
Sbjct: 593 ALPQLQVLILRSNRFHGAIGSWHSNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTD 652

Query: 221 TS-QLRYLQDVISPYGQV-STDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD 278
            +  LRY+Q    P  Q+      + Y YS+ M ++G    Y KIPD+   I  S N F 
Sbjct: 653 IANDLRYMQ--ARPKFQIPGYGWTAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFK 710

Query: 279 RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF 338
             IPTSI NL G  +LNL +NNL GHIPS LG+LT LESLDLS N+ SG+IP QL   TF
Sbjct: 711 GQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLTRITF 770

Query: 339 LEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSE 398
           L FF+VS N+LTG IP G QF TF N SFDGN GLCG PLS+ C S EA      T  S 
Sbjct: 771 LAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEASPP---TSSSS 827

Query: 399 ESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIRR 455
           +   +  FDWK +L+GY  GLV G+ +G+  +S    WF+   G +Q    +K  R 
Sbjct: 828 KQGSTSEFDWKFVLMGYGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/465 (48%), Positives = 287/465 (61%), Gaps = 21/465 (4%)

Query: 1    IHGKIPKWLLDPSMQYLNALNLSHNLLT-------------------SSNNLQGPLPVPP 41
            IHGKIPKW+ +   + L+ ++L+HN LT                   SSN LQG LPVPP
Sbjct: 1250 IHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPXVXLPWXSLIYLELSSNMLQGSLPVPP 1309

Query: 42   PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
                 Y V NN  TG+IP   CNL+ +  L LS+N LSG++P+CL N  + LSVL+L GN
Sbjct: 1310 SSISTYFVENNRFTGKIPPLXCNLSLLHMLDLSNNTLSGMIPECLSNLXNSLSVLNLXGN 1369

Query: 102  NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
            NF G IP  F   S+L +IDLS NL +G +PRSL NC+ LE L+LGNNQISDTFP WLG 
Sbjct: 1370 NFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRSLTNCTVLESLNLGNNQISDTFPFWLGA 1429

Query: 162  IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
            +P L VLILRSN+F+G I +PRT+  F KL IIDLS N F+G LPS  FL   AMK ++ 
Sbjct: 1430 LPELQVLILRSNRFHGAIGKPRTNFEFPKLRIIDLSYNSFSGNLPSVYFLDWIAMKSIDA 1489

Query: 222  SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
                Y+Q   S +   +  L   Y YS+ M +KG    Y KIP I   I  SSN+F   I
Sbjct: 1490 DNFTYMQ-ASSGFSTQTYKLYDNYTYSMTMTNKGMERVYEKIPGIFRAIDFSSNKFKGEI 1548

Query: 282  PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
            PTSI  LKGL +LN   N+L G IP+ L NLT LE+LDLS N   G+IPQQL E TFL F
Sbjct: 1549 PTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEALDLSQNNLLGEIPQQLTEMTFLGF 1608

Query: 342  FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGC-ESDEARANEDHTEGSEES 400
            F+VS N LTG IP  KQF TF + S++GN GLCG PL + C    +A      +E  ++ 
Sbjct: 1609 FNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPLIRKCGNPKQASPQPSTSEQGQDL 1668

Query: 401  LFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445
              +  FD K++L+GY   LV G+++G+ F++    WF+   G +Q
Sbjct: 1669 EPASXFDRKVVLMGYXSXLVFGVIIGYIFTTRKHEWFVKTFGRRQ 1713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/465 (48%), Positives = 292/465 (62%), Gaps = 20/465 (4%)

Query: 1    IHGKIPKWLLDPSMQYLNALNLSHNLLT-------------------SSNNLQGPLPVPP 41
            IHG+IPKW+ +   + L  ++LS+NLLT                   S N LQG LPVPP
Sbjct: 1479 IHGQIPKWMWNMGKETLWVMDLSNNLLTCFEQAPVVLPWITLRVLELSYNQLQGSLPVPP 1538

Query: 42   PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
                 Y V NN L G+ PS IC+L+ +  L LS+NNLSG++PQCL + SD LSVL+L+GN
Sbjct: 1539 SSISDYFVHNNRLNGKFPSLICSLHHLHILDLSNNNLSGMIPQCLSDSSDSLSVLNLRGN 1598

Query: 102  NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
            NF G+IP TF  + RL +ID S+N  +G+IPRSL NC +LE L+LGNNQI+DTFP WLG+
Sbjct: 1599 NFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRSLGNCKELEILNLGNNQINDTFPFWLGS 1658

Query: 162  IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
             P L +LILR N+F+G I+ PR +  F  L IIDLS N F G LP+  FL   AM  V+ 
Sbjct: 1659 FPELQLLILRHNRFHGAIENPRANFEFPTLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDE 1718

Query: 222  SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
                Y+Q +       +  L   Y+YS+ M +KG    Y KIP     I LSSN+F   I
Sbjct: 1719 ENFSYMQSMTGFVLIRTYRLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEI 1778

Query: 282  PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
            P SI  L+GL +LN+ +N+L GHIPS LGNL  LE+LDLS N  SG+IPQQL   TFLEF
Sbjct: 1779 PKSIGKLRGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEF 1838

Query: 342  FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESL 401
            F+VS N+L G IP GKQF TF N S++GN GLCG PLSK CE+ ++ A    T+     L
Sbjct: 1839 FNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGLCGNPLSKECENSKSTAPPPPTDKHGGDL 1898

Query: 402  FSG-AFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445
             SG   +  I+L+GY  GLV G+ +G+  ++    WF+   G +Q
Sbjct: 1899 ESGRKVELMIVLMGYGSGLVVGMAIGYTLTTRKHEWFVKTFGKRQ 1943

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/484 (49%), Positives = 285/484 (58%), Gaps = 41/484 (8%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSS-------------------NNLQGPLPVPP 41
           IHG IPKW+ + S + L AL LS N LT                     N LQGPLP+PP
Sbjct: 524 IHGPIPKWVWNISKETLEALRLSGNFLTGFDQRPVVLPWSRLYSLQLDFNMLQGPLPIPP 583

Query: 42  PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
           P TILY V  N LTGEI   ICN++++K L L+ NNLSG +PQCL NFS  LSVLDL  N
Sbjct: 584 PSTILYSVYGNKLTGEISPLICNMSSLKLLDLARNNLSGRIPQCLANFSKSLSVLDLGSN 643

Query: 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           +  G IP T    + L VIDL  N F+G+IPRS  NC  LE L LGNNQI D FP WLG 
Sbjct: 644 SLDGPIPQTCTVPNNLRVIDLGENQFRGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGA 703

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
           +P L VLILRSN+F+G I    T+ RF KLHIIDLS N FTG LPS+ F  LDAM+I++ 
Sbjct: 704 LPQLQVLILRSNRFHGAIGSWHTNFRFPKLHIIDLSYNEFTGNLPSEYFQNLDAMRILDG 763

Query: 222 SQLRYLQDVISPYGQVSTDLISTY----------DYSLIMNSKGRMMTYNKIPDILTGII 271
            QL Y +  +    Q+   L + Y          D  + M  KG    Y  IP  L  I 
Sbjct: 764 GQLGYKKANVV---QLPIVLRTKYMMGDMVGPRNDTHIKMMIKGMRREYKNIPYNLMNID 820

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
           LSSN+FD  IP SI  L GL  LNL NN L G I + L NLT LE+LDLS N+  G+IPQ
Sbjct: 821 LSSNKFDGEIPESIGGLVGLYSLNLSNNALTGPILTSLANLTQLEALDLSQNKLLGEIPQ 880

Query: 332 QLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARA-- 389
           QL + TFL  F VS N+LTG IP GKQF TF N+SFDGN GLCG PLS+ C S +  +  
Sbjct: 881 QLTQLTFLAVFSVSHNHLTGPIPQGKQFNTFSNSSFDGNPGLCGSPLSRVCGSSKGWSLT 940

Query: 390 --NEDHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIA 447
                   GS        FDWKI+L+GY  G+V G+ +G+  +     WF+   G QQ  
Sbjct: 941 PPPSTFGNGSPSD-----FDWKIVLMGYGSGIVMGVSIGYCLTVWKHEWFVKTFGRQQRK 995

Query: 448 TRKK 451
            RKK
Sbjct: 996 LRKK 999

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/461 (48%), Positives = 282/461 (61%), Gaps = 28/461 (6%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLT-------------------SSNNLQGPLPVPP 41
           + G IPKW ++ S   L AL+L+ NLLT                   +SN  QG LP+PP
Sbjct: 516 LEGHIPKWFMNMSTITLEALSLAGNLLTGFEQSFDVLPWNNLRSLSLNSNKFQGSLPIPP 575

Query: 42  PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
           P    Y VSNN L GEIP  ICNL ++  L LS NNLSG LPQCLGN S   SVL+L  N
Sbjct: 576 PAIFEYKVSNNKLNGEIPEVICNLTSLFVLDLSINNLSGKLPQCLGNKSSTASVLNLHNN 635

Query: 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           +F G IP+TF     L V+D S N  +G+IP+SL NC++LE L+L  N I+D FPSWLG 
Sbjct: 636 SFSGDIPETFTSGCSLRVVDFSQNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGV 695

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
           +P+L V+ILRSN  +G+I +P T+  F +L I+DLSNN F GKLP + F    AMK V  
Sbjct: 696 LPDLRVMILRSNGLHGVIGKPETNVEFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRN 755

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
             L Y+Q   S     +T +   Y+YS+ M +KG M  Y KI D LT I LSSN F+  I
Sbjct: 756 EDLIYMQANTSFLTSHNT-MEKQYEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGI 814

Query: 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           P  + +LK L +LNL NN L G IP  L NL  LE+LDLS+N+ SG+IP QL + TFL  
Sbjct: 815 PEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAV 874

Query: 342 FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDE---ARANEDHTEGSE 398
           F+VS N+L+G IP G QF TFDNTSFD N GLCG PLSK C + E     A ED   GS 
Sbjct: 875 FNVSHNFLSGRIPRGNQFETFDNTSFDANPGLCGEPLSKECGNGEDSLPAAKEDEGSGSP 934

Query: 399 ESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLD 439
                    WK+++IGYA GLV G++LG   ++    W ++
Sbjct: 935 PE-----SRWKVVVIGYASGLVIGVILGCAMNTRKYEWLVE 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/452 (51%), Positives = 273/452 (60%), Gaps = 26/452 (5%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTS-------------------SNNLQGPLPVPP 41
           IHG IPKW+ + S + L  L+LS NLLT                    SN LQGPLP+PP
Sbjct: 479 IHGLIPKWIWNISQENLGTLDLSXNLLTXFDXHPVVLPWSRLSILMLDSNMLQGPLPIPP 538

Query: 42  PETILYL-VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQG 100
           P T  Y  VS N L GEI   ICN++++  L LS NNLSG +PQCL N S  LSVLDL  
Sbjct: 539 PSTXEYYSVSRNKLIGEISPLICNMSSLMILDLSSNNLSGRIPQCLANLSKSLSVLDLGS 598

Query: 101 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 160
           N+  G IP T    + L VIDL  N FQG+IPRS  NC  LE L LGNNQI D FP WLG
Sbjct: 599 NSLDGPIPQTCTVTNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIBDIFPFWLG 658

Query: 161 TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
            +P L VLILRSN F+G I     + RF KL I+DLS+N+F G LPS+ F   DAMK+ +
Sbjct: 659 ALPQLQVLILRSNXFHGAIGSWHXNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTD 718

Query: 221 TS-QLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR 279
            +  LRY+Q     +  +       Y YSL M +KG    Y KIPDI   I  S N F  
Sbjct: 719 IANDLRYMQ-ARXEFXBLGYTWTGHYLYSLTMXNKGMQRFYEKIPDIFIAIDFSGNNFKG 777

Query: 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL 339
            IP S  NLKGL +LNL +NNL GHIPS LGNL  LESLDLS N+ SG+IP QL   TFL
Sbjct: 778 QIPISTGNLKGLHLLNLGDNNLTGHIPSSLGNLPRLESLDLSQNQLSGEIPLQLTRITFL 837

Query: 340 EFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEE 399
            FF+VS N+LTG IP G QF TF N SFDGN GLCG  LS+ C S EA      ++    
Sbjct: 838 AFFNVSHNHLTGTIPQGNQFTTFPNASFDGNPGLCGSTLSRACGSFEASPPSSSSKQGST 897

Query: 400 SLFSGAFDWKIILIGYAGGLVTGLVLGFNFSS 431
           S     FDWK +L+GY  GLV G+ +G+  +S
Sbjct: 898 S----EFDWKFVLMGYGSGLVIGVSIGYCLTS 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/460 (48%), Positives = 283/460 (61%), Gaps = 28/460 (6%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLT-------------------SSNNLQGPLPVPP 41
           + G IPKW ++ S   L AL+L+ NLLT                   +SN  QG LP+PP
Sbjct: 420 LEGHIPKWFMNVSTITLEALSLAGNLLTGFEQSFDVLPWNNLRSLSLNSNKFQGSLPIPP 479

Query: 42  PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
           P    Y VSNN L GEIP  ICNL ++  L LS+NNLSG LP CLGN S   SVL+L+ N
Sbjct: 480 PAIYEYQVSNNKLNGEIPEVICNLTSLSVLDLSNNNLSGKLPPCLGNKSSTASVLNLRNN 539

Query: 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           +F G IP+TF     L V+DLS N  +G+IP+SL NC++LE L+L  N I+D FPSWLG 
Sbjct: 540 SFSGDIPETFTSGCSLRVVDLSQNKLEGKIPKSLANCAELEILNLEQNNINDVFPSWLGM 599

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
           +P+L VLI RSN  +G+I +P T+  F +L I+DLSNN F GKLP + F    AMK V+ 
Sbjct: 600 LPDLKVLIFRSNGLHGVIGKPETNVDFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVHN 659

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
             L Y+Q   S        + + Y YS+ M +KG M  Y KI D L+ I LSSN F+  I
Sbjct: 660 EPLIYMQADTS-IDISRASVTNPYPYSMTMTNKGVMTLYEKIQDSLSAIDLSSNGFEGGI 718

Query: 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           P  + +LK L +LNL NN L G IP  L NL  LE+LDLS+N+ SG+IP QL + TFLE 
Sbjct: 719 PEVLGDLKALHLLNLSNNFLSGRIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLEI 778

Query: 342 FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESL 401
           F+VS N+L+G IP G QF  FD+TSFD NSGLCG PLSK C +D      D     EE  
Sbjct: 779 FNVSHNFLSGPIPRGNQFGAFDSTSFDANSGLCGEPLSKKCGND-----VDPLPAPEEDG 833

Query: 402 FSG---AFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFL 438
            SG    F WK+++IGYA GL+ G++LG   ++    W +
Sbjct: 834 GSGYPLEFGWKVVVIGYATGLLIGVILGCVMNTRKYEWVV 873

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/460 (47%), Positives = 280/460 (60%), Gaps = 28/460 (6%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTS-------------------SNNLQGPLPVPP 41
           + G+IPKW ++ S   L  L L+ NLLT                    SN LQG LP+PP
Sbjct: 519 LEGRIPKWFMNMSTTTLEDLYLARNLLTGFDQSFDVLPWNNLRSLQLHSNKLQGSLPIPP 578

Query: 42  PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
           PE   Y V NN LTGEIP  ICNL ++  L LS+NNLSG L  CLGN S   SVL+L  N
Sbjct: 579 PEIYAYGVQNNKLTGEIPIVICNLISLSVLDLSNNNLSGKLTHCLGNISSTASVLNLHNN 638

Query: 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           +F G IPDTF     L VID S N  + +IP+SL NC+KLE L+L  N+I+D FPSWLG 
Sbjct: 639 SFSGDIPDTFTSGCSLKVIDFSENKLEWKIPKSLANCTKLEILNLEQNKINDVFPSWLGM 698

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
           +P+L VLILRSN  +G+I +P T+  F +L I+DLSNN F GKLP +      AMK V  
Sbjct: 699 LPDLRVLILRSNGLHGVIGKPETNVEFRRLQIVDLSNNSFKGKLPLEYLRNWTAMKNVRN 758

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
             L Y+Q  IS Y      +   Y +S+ + +KG M  Y KI D L+ I LSSN F+  I
Sbjct: 759 EHLIYMQVGIS-YQIFGDSMTIPYQFSMTITNKGVMRLYEKIQDSLSAIDLSSNGFEGGI 817

Query: 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           P  + +LK L +LNL NN L G IP  L NL  LE+LDLS N+ SG+IP +L + TFLE 
Sbjct: 818 PEVLGDLKELHLLNLSNNFLSGGIPPSLSNLKELEALDLSQNKLSGEIPVKLAQLTFLEV 877

Query: 342 FDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDE---ARANEDHTEGSE 398
           F+VS N+L+G IP G QF TF+NTSFD N GLCG PLSK C +DE     A ED   G  
Sbjct: 878 FNVSHNFLSGPIPRGNQFGTFENTSFDANPGLCGEPLSKECGNDEDSLPAAKEDEGSG-- 935

Query: 399 ESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFL 438
              +   F WK++++GYA G+V G+++G   ++    W +
Sbjct: 936 ---YPLEFGWKVVVVGYASGVVNGVIIGCVMNTRKYEWVV 972

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.864	0.531	0.425	5.1e-74
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.875	0.677	0.381	2e-72
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.857	0.493	0.409	1.1e-71
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.872	0.492	0.381	1.1e-69
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.861	0.491	0.385	4.9e-69
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.859	0.448	0.390	9.2e-68
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.875	0.461	0.378	3.1e-67
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.934	0.451	0.370	5.1e-67
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.877	0.596	0.374	9.4e-66
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.899	0.460	0.377	1.5e-65

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 173/407 (42%), Positives = 226/407 (55%)

Query:    34 QGPLPVPPPETILYLVS-NNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE 92
             Q P P+ P  ++ YL S NN  +GEIP  IC L+ ++ LVLS+NN SG +P+C  N    
Sbjct:   339 QDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILVLSNNNFSGSIPRCFENL--H 396

Query:    93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 152
             L VL L+ NN  G  P+  I    L   D+ HNLF G +P+SL+NCS +EFL++ +N+I+
Sbjct:   397 LYVLHLRNNNLSGIFPEEAISH-HLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRIN 455

Query:   153 DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLC 212
             DTFPSWL  +PNL +L+LRSN+FYG I  P     FS+L I D+S NRFTG LPS  F+ 
Sbjct:   456 DTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVG 515

Query:   213 LDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG-RMMTYNKIPDILTGII 271
                M  V     R +Q  ++  G +  D    Y  S+ + +KG +M        I   I 
Sbjct:   516 WSVMSSVVDIDGRIIQYTVT--G-IDRDF---YHKSVALINKGLKMELVGSGFTIYKTID 569

Query:   272 LSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
             +S NR +  IP SI  LK             GHIP  L NL+NL+SLDLS NR SG IP 
Sbjct:   570 VSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPG 629

Query:   332 QLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANE 391
             +L + TFLE+ + S N L G IP   Q  T D++SF  N GLCG PL K C  +E    +
Sbjct:   630 ELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGGEEEATKQ 689

Query:   392 DHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFL 438
             +  E  EE      F W    IGY  G+V GL +G    S    WF+
Sbjct:   690 EQDEDKEEE--DQVFSWIAAAIGYVPGVVCGLTIGHILVSHKRDWFM 734

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 162/425 (38%), Positives = 238/425 (56%)

Query:    34 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93
             +G  P PP   I     NNS TG+IP  +CN  ++  L LS+NN +G +P C+GNF+   
Sbjct:   185 KGSFPNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDVLDLSYNNFTGSIPPCMGNFT--- 241

Query:    94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
              +++L+ N   G IPD F   +    +D+ +N   G +PRSL+NCS + FL + +N+I+D
Sbjct:   242 -IVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRIND 300

Query:   154 TFPSWLGTIPNLNVLILRSNKFYGIIKEP--RTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
             +FP WL  +PNL VL LRSN F+G +  P  ++   F KL I+++S+NRFTG LP+  F 
Sbjct:   301 SFPLWLKALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTGSLPTNYFA 360

Query:   212 --CLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTG 269
                + ++K+ +  +L Y+       G  S+D    Y+ +L +  KG  M   K+    + 
Sbjct:   361 NWSVKSLKMYDEERL-YM-------GDYSSDRF-VYEDTLDLQYKGLYMEQGKVLTFYSA 411

Query:   270 IILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQI 329
             I  S N+ +  IP SI  LK             GHIP    N+T LESLDLS N+ SG+I
Sbjct:   412 IDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEI 471

Query:   330 PQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARA 389
             PQ+L   ++L + DVSDN LTG IP G Q      +SF+GNSGLCG PL + C  ++A +
Sbjct:   472 PQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPS 531

Query:   390 NEDHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATR 449
              ++  E  EE L     +W+   IGY  G++ GL +G   +    GWF+   G  ++   
Sbjct:   532 TQEPEEEEEEIL-----EWRAAAIGYGPGVLFGLAIGHVVALYKPGWFIKNNGQNRL--- 583

Query:   450 KKGIR 454
              +GIR
Sbjct:   584 -RGIR 587

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 163/398 (40%), Positives = 214/398 (53%)

Query:    34 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93
             +G  P+ PP   +   SNN  TG IP   C    +  L LS+NN SG +P+CL N S  L
Sbjct:   388 KGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLDLSNNNFSGTIPRCLTNVSLGL 447

Query:    94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
               L L  N+  G +PD    E RL ++D+ HN   G++PRSLVNC+ L+FL++  N I+D
Sbjct:   448 EALKLSNNSLTGRLPDI---EDRLVLLDVGHNQISGKLPRSLVNCTTLKFLNVEGNHIND 504

Query:   154 TFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213
             TFP WL  +  L +++LRSN+F+G I  P     F+ L IID+S N F G LP   F   
Sbjct:   505 TFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQNYFANW 564

Query:   214 DAMKIVNTSQ-LRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIIL 272
              A  +VNT Q  R+ +     + +  T L S Y  S+ +  KGR +   KIPD  T I  
Sbjct:   565 SA-PLVNTPQGYRWPEYTGDEHSKYETPLWS-YP-SIHLRIKGRSIELGKIPDTYTSIDF 621

Query:   273 SSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ 332
             S N F+  IP SI +LK             G IPS L  L  LESLDLS NR SG IPQ+
Sbjct:   622 SGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLKQLESLDLSQNRISGNIPQE 681

Query:   333 LVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANED 392
             L E TFL + ++S N LTG IP   Q      +SF+GN  LCG PL + C       +  
Sbjct:   682 LRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINLCGLPLQESCLRGNGVPSTP 741

Query:   393 HTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFS 430
             HT+  E      A +WK   IGY  G++ GL +G  F+
Sbjct:   742 HTQEQELPKQEHALNWKAAAIGYGPGVLFGLAIGQAFA 779

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 158/414 (38%), Positives = 226/414 (54%)

Query:    34 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93
             +GP P PP    L    NNS TG IP   CN +++  L LS+NNL+G +P+CL +F + L
Sbjct:   377 RGPFPKPPLSINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPIPRCLSDFQESL 436

Query:    94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
              V++L+ NN  G++PD F   + L  +D+ +N   G++PRSL+NCS L F+ + +N+I D
Sbjct:   437 IVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKD 496

Query:   154 TFPSWLGTIPNLNVLILRSNKFYGIIKEP-RTDCRFSKLHIIDLSNNRFTGKLPSKSFLC 212
             TFP WL  +P+L  L LRSNKF+G I  P R    F KL I+++S+N FTG LP   F+ 
Sbjct:   497 TFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVN 556

Query:   213 LDAMKI-VNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII 271
              +A  + +N     Y+ D  +PY          Y+ ++ +  KG  M   K+      I 
Sbjct:   557 WEASSLQMNEDGRIYMGDYNNPY--------YIYEDTVDLQYKGLFMEQGKVLTSYATID 608

Query:   272 LSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
              S N+ +  IP SI  LK             GHIP  L N+T LESLDLS N+ SG IP 
Sbjct:   609 FSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPN 668

Query:   332 QLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANE 391
              L   +FL +  V+ N L G IP G Q      +SF+GN+GLCG PL   C +      +
Sbjct:   669 GLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSCFAPPTPQPK 728

Query:   392 DHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445
             +  E  EE L     +WK ++IGY  GL+ GL++    +S    W +  +G ++
Sbjct:   729 EEDE-DEEVL-----NWKAVVIGYWPGLLLGLIMAHVIASFKPKWLVKIVGPEK 776

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 158/410 (38%), Positives = 222/410 (54%)

Query:    35 GPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS 94
             G  P PP  +I     NNS TG IP  ICN +++  L LS+N  +G +PQCL N    L 
Sbjct:   372 GAFPTPPLGSIYLSAWNNSFTGNIPLSICNRSSLIVLDLSYNKFTGPIPQCLSN----LK 427

Query:    95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
             V++L+ N+  G+IPD F   ++   +D+ +N   G++P+SL+NCS L FL + NN+I DT
Sbjct:   428 VVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNRIEDT 487

Query:   155 FPSWLGTIPNLNVLILRSNKFYGIIKEP-RTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213
             FP WL  +PNL+VL LRSN+F+G +  P R    F +L I++LS+N FTG LP   F+  
Sbjct:   488 FPFWLKALPNLHVLTLRSNRFFGHLSPPDRGPLAFPELRILELSDNSFTGSLPPNFFVNW 547

Query:   214 DAMKI-VNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIIL 272
              A    +N     Y+ D  + Y          Y+ ++ +  KG  M   K+    + I  
Sbjct:   548 KASSPKINEDGRIYMGDYKNAY--------YIYEDTMDLQYKGLFMEQGKVLTFYSTIDF 599

Query:   273 SSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ 332
             S N+ +  IP SI  LK             GHIP  L N+T LESLDLS N+ SG IP++
Sbjct:   600 SGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVTELESLDLSRNQLSGNIPRE 659

Query:   333 LVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANED 392
             L   +FL +  V+ N L G IP G QF+    +SF+GN GLCG PL   C +   +  ++
Sbjct:   660 LGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGLPLQGSCVAPPTKYPKE 719

Query:   393 HTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLG 442
               E  EE       +WK +  GY  GL+ GLV+    +S    WF+  LG
Sbjct:   720 EDEEEEED---EVIEWKAVFFGYWPGLLLGLVMAHVIASFKPKWFVKILG 766

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 162/415 (39%), Positives = 231/415 (55%)

Query:    39 VPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDL 98
             VP P    +  SNN+ +G+IPS+IC+L ++  L LS+NN SG +P C+G F   LS L+L
Sbjct:   476 VPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNL 535

Query:    99 QGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW 158
             + N   G++P T IK  R   +D+SHN  +G++PRSL++ S LE L++ +N+I+DTFP W
Sbjct:   536 RRNRLSGSLPKTIIKSLRS--LDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFW 593

Query:   159 LGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKI 218
             L ++  L VL+LRSN F+G I + R    F KL IID+S N F G LPS  F+    M  
Sbjct:   594 LSSLKKLQVLVLRSNAFHGRIHKTR----FPKLRIIDISRNHFNGTLPSDCFVEWTGMHS 649

Query:   219 VNTSQLRYLQDVI-SPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRF 277
             +  ++ R+ +  + S Y          Y  S+++ +KG  M   +I  I T +  S N+F
Sbjct:   650 LEKNEDRFNEKYMGSGY----------YHDSMVLMNKGLEMELVRILKIYTALDFSGNKF 699

Query:   278 DRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFT 337
             +  IP SI  LK             GHIPS +GNL  LESLD+S N+ SG+IPQ+L   +
Sbjct:   700 EGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLS 759

Query:   338 FLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGS 397
             +L + + S N L G +P G QF T   +SF+ N GLCGRPL + C       +E    G 
Sbjct:   760 YLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEE-CRV----VHEPTPSGE 814

Query:   398 EESLFSG-AFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKK 451
              E+L S     W    IG+  G+V GL +G    S    WF   L +     R++
Sbjct:   815 SETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVLSSKPRWFFKVLYINNSRRRRR 869

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 156/412 (37%), Positives = 216/412 (52%)

Query:    34 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93
             +G LP  P   I +   +NS TGEIP  ICN  ++  + LS+NN +G +PQCL NF    
Sbjct:   462 EGALPTLPLSIIGFSAIHNSFTGEIPLSICNRTSLTMVDLSYNNFTGPIPQCLSNFM--- 518

Query:    94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
               ++L+ N+  G+IPDTF  +S L  +D+ +N   G++PRSL+NCS L FL + NN++ D
Sbjct:   519 -FVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKD 577

Query:   154 TFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD-CRFSKLHIIDLSNNRFTGKLPSKSFLC 212
             TFP WL  +PNL VL LRSNKFYG I  P      F +L I ++++N FTG LP   F+ 
Sbjct:   578 TFPFWLKALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIADNMFTGSLPPSFFVN 637

Query:   213 LDAMKIV-NTSQLRYLQDVISPYGQVSTDLIS-TYDYSLIMNSKGRMMTYNKIPDILTGI 270
               A  +  N     Y+   +  Y + +   +  TY  ++ +  KG  M   ++      I
Sbjct:   638 WKASALTKNEDGGLYM---VYEYDKAANSPVRYTYTDTIDLQYKGLHMEQERVLTSYAAI 694

Query:   271 ILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIP 330
               S NR    IP SI  LK             GHIP    NL NLESLD+S N+ SG IP
Sbjct:   695 DFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIP 754

Query:   331 QQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARAN 390
               L   +FL +  V+ N L G IP G Q      +SF+GN+GLCG PL + C        
Sbjct:   755 NGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSSVPPI 814

Query:   391 EDHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLG 442
             +   E  E+       +WK + IGYA GL+ GL +    +S    W +  +G
Sbjct:   815 QPKQEDEEKG---EVINWKAVAIGYAPGLLFGLAIAHLIASYKPEWLVKIIG 863

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 165/445 (37%), Positives = 237/445 (53%)

Query:     1 IHGKIPKWLLD-PSMQYXXXXXXXXXXXXXXXXXQGPLPVPPPETILYLVSNNSLTGEIP 59
             I G++P WL   P++ Y                  G   V  P  I    SNN+ TG+IP
Sbjct:   503 IKGQVPGWLWTLPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIP 562

Query:    60 SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV 119
             S+IC L ++  L LS NN +G +P+C+      L VL+L+ NN  G +P   I ES L  
Sbjct:   563 SFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPK-HIFES-LRS 620

Query:   120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
             +D+ HNL  G++PRSL+  S LE L++ +N+I+DTFP WL ++  L VL+LRSN F+G I
Sbjct:   621 LDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPI 680

Query:   180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
              E      F +L IID+S+N F G LP++ F+   AM     S L   +D  S    + +
Sbjct:   681 HE----ATFPELRIIDISHNHFNGTLPTEYFVKWSAM-----SSLGKNEDQ-SNEKYMGS 730

Query:   240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGXXXXXXXXX 299
              L   Y  S+++ +KG  M   +I  I T +  S N+F+  IP SI  LK          
Sbjct:   731 GLY--YQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNN 788

Query:   300 XXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQF 359
                GHIPS +GNLT LESLD+S N+ +G+IPQ+L + +FL + + S N L G +P G QF
Sbjct:   789 AFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQF 848

Query:   360 ATFDNTSFDGNSGLCGRPLSKGCESDEARANEDH--TEGSEESLFSGAFDWKIILIGYAG 417
                + ++F+ N GL G  L + C      A++ +  TE  EE        W    IG+  
Sbjct:   849 RRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEED--EEEISWIAAAIGFIP 906

Query:   418 GLVTGLVLGFNFSSIIVGWFLDKLG 442
             G+V GL +G+   S    WF++  G
Sbjct:   907 GIVFGLTIGYILVSYKPEWFMNPFG 931

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 154/411 (37%), Positives = 215/411 (52%)

Query:    34 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93
             +G LP  P     +   +N+ TGEIP  IC   ++  L L++NNL G + QCL N    +
Sbjct:   264 EGALPSLPHSINAFSAGHNNFTGEIPLSICTRTSLGVLDLNYNNLIGPVSQCLSN----V 319

Query:    94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
             + ++L+ NN  GTIP+TFI  S +  +D+ +N   G++PRSL+NCS LEFL + NN+I D
Sbjct:   320 TFVNLRKNNLEGTIPETFIVGSSIRTLDVGYNRLTGKLPRSLLNCSSLEFLSVDNNRIKD 379

Query:   154 TFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD-CRFSKLHIIDLSNNRFTGKLPSKSFLC 212
             TFP WL  +P L VL L SNKFYG I  P      F +L I+++S+N+FTG L S+ F  
Sbjct:   380 TFPFWLKALPKLQVLTLSSNKFYGPISPPHQGPLGFPELRILEISDNKFTGSLSSRYFEN 439

Query:   213 LDAMK-IVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII 271
               A   ++N     Y+    +PYG V    +   D    +  KG  M   ++    + I 
Sbjct:   440 WKASSAMMNEYVGLYMVYEKNPYGVVVYTFLDRID----LKYKGLNMEQARVLTSYSAID 495

Query:   272 LSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
              S N  +  IP SI  LK             GHIP  L NL  L+SLD+S N+ SG IP 
Sbjct:   496 FSRNLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQSLDMSRNQLSGTIPN 555

Query:   332 QLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANE 391
              L + +FL +  VS N L G IP G Q      +SF+GN GLCG PL + C  + A   +
Sbjct:   556 GLKQLSFLAYISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCFDNSASPTQ 615

Query:   392 DHTEGSEESLFSGAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLG 442
              H +  EE        WK + +GY  GL+ G  + +  +S    W    +G
Sbjct:   616 HHKQDEEEEE-EQVLHWKAVAMGYGPGLLVGFAIAYVIASYKPEWLTKIIG 665

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 167/442 (37%), Positives = 231/442 (52%)

Query:     1 IHGKIPKWLLD-PSMQYXXXXXXXXXXXXXXXXXQGPLPVPPPETILYLVSNNSLTGEIP 59
             I G++P+WL   P+++Y                  G L + P     ++ S+N  +GEIP
Sbjct:   466 IEGQVPEWLWRLPTLRYVNIAQNAFS---------GELTMLPNPIYSFIASDNKFSGEIP 516

Query:    60 SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV 119
               +C + T   LVLS+NN SG +P C    +  LS+L L+ N+  G IP+  +    L  
Sbjct:   517 RAVCEIGT---LVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEESL-HGYLRS 572

Query:   120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
             +D+  N   G+ P+SL+NCS L+FL++  N+I+DTFPSWL ++PNL +L+LRSN+F+G I
Sbjct:   573 LDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPI 632

Query:   180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI--SPYGQV 237
               P     FSKL   D+S NRF+G LPS  F        V  S +    D+I  +P   V
Sbjct:   633 FSPGDSLSFSKLRFFDISENRFSGVLPSDYF--------VGWSVMSSFVDIIDNTPGFTV 684

Query:   238 STDLISTYDYSLIMNSKG-RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGXXXXXX 296
               D   ++  S+++  KG  M       +I   I +S NR +  IP SI  LK       
Sbjct:   685 VGDDQESFHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNM 744

Query:   297 XXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
                   GHIP  L NL+NL+SLDLS NR SG IP +L E TFL   + S N L G IP G
Sbjct:   745 SNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQG 804

Query:   357 KQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESLFSGAFDWKIILIGYA 416
              Q  + +++SF  N GLCG PL K C  +E    E+  E  E+    G   W    IGY 
Sbjct:   805 TQIQSQNSSSFAENPGLCGAPLQKKCGGEE----EEDKEKEEKD--KG-LSWVAAAIGYV 857

Query:   417 GGLVTGLVLGFNFSSIIVGWFL 438
              GL  GL +G   +S    WF+
Sbjct:   858 PGLFCGLAIGHILTSYKRDWFM 879

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-26
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  146 bits (371), Expect = 7e-38
 Identities = 133/411 (32%), Positives = 184/411 (44%), Gaps = 53/411 (12%)

Query: 3   GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE--TILYL-VSNNSLTGEIP 59
           G+IP  +    +  LN L+L +N      NL GP+P        + YL +  N L+G IP
Sbjct: 226 GEIPYEI--GGLTSLNHLDLVYN------NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 60  SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV 119
             I +L  + +L LS N+LSG +P+ +    + L +L L  NNF G IP       RL V
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           + L  N F G IP++L   + L  LDL  N ++   P  L +  NL  LIL SN   G I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
            +    CR   L  + L +N F+G+LPS      +  K+     L Y  D+ +   Q   
Sbjct: 397 PKSLGACR--SLRRVRLQDNSFSGELPS------EFTKL----PLVYFLDISNNNLQGRI 444

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDI-----LTGIILSSNRFDRVIPTSIANLKGLQVL 294
           +       SL M S  R   +  +PD      L  + LS N+F   +P  + +L  L  L
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 295 NLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
            L  N L G IP  L +   L SLDLS+N+ SGQIP    E   L   D+S N L+G IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 355 --LGK----------------------QFATFDNTSFDGNSGLCGRPLSKG 381
             LG                        F   + ++  GN  LCG   + G
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG 615

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (332), Expect = 6e-33
 Identities = 100/308 (32%), Positives = 144/308 (46%), Gaps = 56/308 (18%)

Query: 49  VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP 108
           +S  +++G+I S I  L  ++ + LS+N LSG +P  +   S  L  L+L  NNF G+IP
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Query: 109 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168
              I    L  +DLS+N+  G IP  + + S L+ LDLG N +    P+ L  + +L  L
Sbjct: 136 RGSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ 228
            L SN+  G I  PR   +   L  I L  N  +G++P          +I   + L +L 
Sbjct: 194 TLASNQLVGQI--PRELGQMKSLKWIYLGYNNLSGEIPY---------EIGGLTSLNHL- 241

Query: 229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL 288
                      DL+                 YN     LTG           IP+S+ NL
Sbjct: 242 -----------DLV-----------------YNN----LTG----------PIPSSLGNL 259

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348
           K LQ L L  N L G IP  + +L  L SLDLS+N  SG+IP+ +++   LE   +  N 
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 349 LTGAIPLG 356
            TG IP+ 
Sbjct: 320 FTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (331), Expect = 1e-32
 Identities = 112/346 (32%), Positives = 158/346 (45%), Gaps = 69/346 (19%)

Query: 16  YLNALNLSHNLLTSSNNLQGPLP---VPPPETILYL-VSNNSLTGEIPS-WICNLNTVKN 70
           Y+  +NLS      +N L GP+P        ++ YL +SNN+ TG IP   I NL T   
Sbjct: 94  YIQTINLS------NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET--- 144

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           L LS+N LSG +P  +G+FS  L VLDL GN   G IP++    + L  + L+ N   G+
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK 190
           IPR L     L+++ LG N +S   P  +G + +LN L L  N   G I  P +      
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKN 261

Query: 191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLI 250
           L  + L  N+ +G +P   F                LQ +IS                  
Sbjct: 262 LQYLFLYQNKLSGPIPPSIF---------------SLQKLIS------------------ 288

Query: 251 MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 310
                              + LS N     IP  +  L+ L++L+L +NN  G IP  L 
Sbjct: 289 -------------------LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 311 NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
           +L  L+ L L +N+FSG+IP+ L +   L   D+S N LTG IP G
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (304), Expect = 3e-29
 Identities = 90/269 (33%), Positives = 120/269 (44%), Gaps = 35/269 (13%)

Query: 88  NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKLEFLDL 146
           N S  +  +DL G N  G I     +   +  I+LS+N   G IP  +    S L +L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206
            NN  + + P   G+IPNL  L L +N   G I  P     FS L ++DL  N   GK+P
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 207 SKSFLCLDAMKIVNTSQLRYLQDVISPY-GQVSTDLISTYDYSLIMNSKGRMMTYNKIPD 265
                      + N + L +L    +   GQ+  +L             G+M +      
Sbjct: 182 ---------NSLTNLTSLEFLTLASNQLVGQIPREL-------------GQMKS------ 213

Query: 266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 325
            L  I L  N     IP  I  L  L  L+L  NNL G IPS LGNL NL+ L L  N+ 
Sbjct: 214 -LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 326 SGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
           SG IP  +     L   D+SDN L+G IP
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  112 bits (282), Expect = 2e-26
 Identities = 106/387 (27%), Positives = 172/387 (44%), Gaps = 59/387 (15%)

Query: 3   GKIPK--WLLDPSMQYLNALNLSHNLLTSSNNLQGPLP---VPPPETILYLVSN------ 51
           G IP   +    S++YLN          S+NN  G +P   +P  ET L L +N      
Sbjct: 107 GPIPDDIFTTSSSLRYLN---------LSNNNFTGSIPRGSIPNLET-LDLSNNMLSGEI 156

Query: 52  -----------------NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS 94
                            N L G+IP+ + NL +++ L L+ N L G +P+ LG     L 
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS-LK 215

Query: 95  VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
            + L  NN  G IP      + L  +DL +N   G IP SL N   L++L L  N++S  
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 155 FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLD 214
            P  + ++  L  L L  N   G I  P    +   L I+ L +N FTGK+P        
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEI--PELVIQLQNLEILHLFSNNFTGKIP-------- 325

Query: 215 AMKIVNTSQLRYLQDVISPY-GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI------L 267
            + + +  +L+ LQ   + + G++  +L    + +++  S   +    +IP+       L
Sbjct: 326 -VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT--GEIPEGLCSSGNL 382

Query: 268 TGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG 327
             +IL SN  +  IP S+   + L+ + L +N+  G +PS    L  +  LD+SNN   G
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Query: 328 QIPQQLVEFTFLEFFDVSDNYLTGAIP 354
           +I  +  +   L+   ++ N   G +P
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)

Query: 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL 339
            IP  I+ L+ LQ +NL  N+++G+IP  LG++T+LE LDLS N F+G IP+ L + T L
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 340 EFFDVSDNYLTGAIP--LGKQFATFDNTSFDGNSGLCGRPLSKGCES 384
              +++ N L+G +P  LG +     + +F  N+GLCG P  + C  
Sbjct: 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 294 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI 353
           L LDN  L+G IP+ +  L +L+S++LS N   G IP  L   T LE  D+S N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 354 P--LGKQFATFDNTSFDGNS-------GLCGRPL 378
           P  LG Q  +    + +GNS        L GR L
Sbjct: 483 PESLG-QLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 51  NNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDT 110
           N  L G IP+ I  L  ++++ LS N++ G +P  LG+ +  L VLDL  N+F G+IP++
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPES 485

Query: 111 FIKESRLGVIDLSHNLFQGRIPRSL 135
             + + L +++L+ N   GR+P +L
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 68  VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127
           +  L L +  L G +P  +      L  ++L GN+  G IP +    + L V+DLS+N F
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP 163
            G IP SL   + L  L+L  N +S   P+ LG   
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 325
           L  + LS+NR   +   +   L  L+VL+L  NNL    P     L +L SLDLS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 30/82 (36%), Positives = 40/82 (48%)

Query: 96  LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 155
           L L      G IP+   K   L  I+LS N  +G IP SL + + LE LDL  N  + + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 156 PSWLGTIPNLNVLILRSNKFYG 177
           P  LG + +L +L L  N   G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           + L +   +G IP  +     L+ ++L  N I    P  LG+I +L VL L  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPS 207
             P +  + + L I++L+ N  +G++P+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 66/198 (33%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 16  YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSH 75
            L +L+L +N +T    L G L        L L  N   +  +PS + NL  +KNL LS 
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLK--SNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSF 172

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 135
           N+LS  LP+ L N    L+ LDL GN     +P      S L  +DLS+N     +  SL
Sbjct: 173 NDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL 228

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195
            N   L  L+L NN++ D  P  +G + NL  L L +N+    I    +    + L  +D
Sbjct: 229 SNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ----ISSISSLGSLTNLRELD 283

Query: 196 LSNNRFTGKLPSKSFLCL 213
           LS N  +  LP  + L L
Sbjct: 284 LSGNSLSNALPLIALLLL 301

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 49  VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP 108
           +S NS+ G IP  + ++ +++ L LS+N+ +G +P+ LG  +  L +L+L GN+  G +P
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 18/59 (30%), Positives = 21/59 (35%)

Query: 93  LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 151
           L  LDL  N         F     L V+DLS N      P +      L  LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF-LEFFDVS 345
           N   +  ++L   N+ G I S +  L  +++++LSNN+ SG IP  +   +  L + ++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 346 DNYLTGAIPLG 356
           +N  TG+IP G
Sbjct: 127 NNNFTGSIPRG 137

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349
            L+ L+L NN L          L NL+ LDLS N  +   P+       L   D+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 310
           L  + LS N F+  IP S+  L  L++LNL+ N+L G +P+ LG
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 20/93 (21%)

Query: 12  PSMQYLNALNLSHNLLTSSNNLQGPLPVP----PPETILYLVSNNSLTGEIPSWICNLNT 67
             +++L ++NLS       N+++G +P          +L L S NS  G IP  +  L +
Sbjct: 439 SKLRHLQSINLS------GNSIRGNIPPSLGSITSLEVLDL-SYNSFNGSIPESLGQLTS 491

Query: 68  VKNLVLSHNNLSGVLPQCLG---------NFSD 91
           ++ L L+ N+LSG +P  LG         NF+D
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 60/196 (30%), Positives = 78/196 (39%), Gaps = 22/196 (11%)

Query: 10  LDPSMQYLNALNLSHNLLT-----SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 64
           L+       ALNLS N L       S  L   L  P   + L    N      +PS   N
Sbjct: 42  LESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLN 101

Query: 65  LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
           LN +++ +     L+             L+ LDL  NN     P   + +S L  +DLS 
Sbjct: 102 LNRLRSNISELLELTN------------LTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT 184
           N  +  +P  L N   L+ LDL  N +SD     L  + NLN L L  NK   I   P  
Sbjct: 150 NKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNK---ISDLPPE 204

Query: 185 DCRFSKLHIIDLSNNR 200
               S L  +DLSNN 
Sbjct: 205 IELLSALEELDLSNNS 220

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
            L  +DLS+N        +      L+ LDL  N ++   P     +P+L  L L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
             L+ L+L NN +   +P  L NL NLE+LDLS N+ +
Sbjct: 1   TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
PLN03150	623	hypothetical protein; Provisional	99.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.42
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
PLN03150	623	hypothetical protein; Provisional	99.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.17
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.75
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
PRK15386	426	type III secretion protein GogB; Provisional	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
PRK15386	426	type III secretion protein GogB; Provisional	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.99
KOG4341	483	consensus F-box protein containing LRR [General fu	95.93
KOG4341	483	consensus F-box protein containing LRR [General fu	95.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.62
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.24
KOG4308	478	consensus LRR-containing protein [Function unknown	94.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.76
KOG4308	478	consensus LRR-containing protein [Function unknown	94.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.6
smart00370	26	LRR Leucine-rich repeats, outliers.	92.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.52
smart00370	26	LRR Leucine-rich repeats, outliers.	91.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.8
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.71
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	88.07
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.81
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	86.79
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	85.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.98
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	84.59
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.16
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	80.74
COG3216	184	Uncharacterized protein conserved in bacteria [Fun	80.72
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.15

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-42  Score=370.21  Aligned_cols=363  Identities=30%  Similarity=0.468  Sum_probs=305.4

Q ss_pred             ccCCChhhhhhcCCCCCEEEccCCCCC------------------CCCcCccCCCCC---CCCCcEEEccCCccccccch
Q 038396            2 HGKIPKWLLDPSMQYLNALNLSHNLLT------------------SSNNLQGPLPVP---PPETILYLVSNNSLTGEIPS   60 (456)
Q Consensus         2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~   60 (456)
                      +|.+|..+.+  +++|++|++++|.++                  +.+.+.+.+|..   +++|+.|++++|.+.+.+|.
T Consensus       225 ~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        225 SGEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             CCcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence            4567777777  777777777777664                  233455566644   68899999999999999999


Q ss_pred             hhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCC
Q 038396           61 WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  140 (456)
Q Consensus        61 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  140 (456)
                      .+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+++
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            999999999999999999989999999998 8999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCcccccccc
Q 038396          141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN  220 (456)
Q Consensus       141 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~  220 (456)
                      |+.|++++|.+.+..|..++.+++|+.|++++|++++..+..+  ..++.|+.|++++|.+++.++. .+..+++|+.++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~  458 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINS-RKWDMPSLQMLS  458 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccCh-hhccCCCCcEEE
Confidence            9999999999999999999999999999999999998877666  7899999999999999977664 466788999999


Q ss_pred             ccCccccccccCCCCCccccccccccceeEeeccCcc---cccccccccccEEEccCCCCCccCchhhhccCCCCeEeCC
Q 038396          221 TSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRM---MTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD  297 (456)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  297 (456)
                      +++|.+.......+..     ..  ...+....+...   ......++.|++|++++|.+.+.+|..+..+++|++|+|+
T Consensus       459 L~~n~~~~~~p~~~~~-----~~--L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  531 (968)
T PLN00113        459 LARNKFFGGLPDSFGS-----KR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS  531 (968)
T ss_pred             CcCceeeeecCccccc-----cc--ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence            9988764322211110     00  111111111111   1112235679999999999999999999999999999999


Q ss_pred             CccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      +|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|...++..+...++.||+.+|+.+
T Consensus       532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-40  Score=356.32  Aligned_cols=365  Identities=32%  Similarity=0.444  Sum_probs=310.2

Q ss_pred             CccCCChhhhhhcCCCCCEEEccCCCCC------------------CCCcCccCCCCC---CCCCcEEEccCCccccccc
Q 038396            1 IHGKIPKWLLDPSMQYLNALNLSHNLLT------------------SSNNLQGPLPVP---PPETILYLVSNNSLTGEIP   59 (456)
Q Consensus         1 l~g~ip~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~   59 (456)
                      ++|.+|+.+.+  +++|++|+|++|+++                  +.+.+.+.+|..   +++|+.|++++|.+++.+|
T Consensus       200 l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        200 LVGQIPRELGQ--MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             CcCcCChHHcC--cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            45789999999  999999999999986                  344555666654   7789999999999998999


Q ss_pred             hhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCC
Q 038396           60 SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS  139 (456)
Q Consensus        60 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  139 (456)
                      ..+.++++|++|++++|.+.+.+|..+..+. +|++|++++|.+++..|..+..+++|+.|++++|++++.+|..+..++
T Consensus       278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~  356 (968)
T PLN00113        278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN  356 (968)
T ss_pred             hhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence            9999999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccc
Q 038396          140 KLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIV  219 (456)
Q Consensus       140 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l  219 (456)
                      +|+.|++++|.+++..|.++..+++|+.|++++|++.+..+..+  ..+++|+.|++++|.+++.+|. .+..++.|+.+
T Consensus       357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L  433 (968)
T PLN00113        357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFL  433 (968)
T ss_pred             CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEE
Confidence            99999999999999999999999999999999999998877666  7889999999999999987774 58899999999


Q ss_pred             cccCccccccccCCCCCccccccccccceeEeeccCccccc--ccccccccEEEccCCCCCccCchhhhccCCCCeEeCC
Q 038396          220 NTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY--NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD  297 (456)
Q Consensus       220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  297 (456)
                      ++++|.+.......+...    .......  ...+......  ......|+.|++++|.+++..|..+..+++|+.|+|+
T Consensus       434 ~Ls~N~l~~~~~~~~~~l----~~L~~L~--L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  507 (968)
T PLN00113        434 DISNNNLQGRINSRKWDM----PSLQMLS--LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS  507 (968)
T ss_pred             ECcCCcccCccChhhccC----CCCcEEE--CcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence            999987643322211111    1111111  1111100000  0113679999999999999999999999999999999


Q ss_pred             CccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCC
Q 038396          298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGR  376 (456)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~  376 (456)
                      +|++++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+..
T Consensus       508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            99999999999999999999999999999999999999999999999999999999865 45777888899999877655


Q ss_pred             C
Q 038396          377 P  377 (456)
Q Consensus       377 ~  377 (456)
                      |
T Consensus       588 p  588 (968)
T PLN00113        588 P  588 (968)
T ss_pred             C
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-38  Score=290.64  Aligned_cols=335  Identities=22%  Similarity=0.252  Sum_probs=240.5

Q ss_pred             ChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            6 PKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         6 p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      +.+|.+  +++|+++++.+|.++       .+|..   ..+++.|+|.+|.|+..-...+..++.|+.||||.|.|+..-
T Consensus        95 ~~~f~n--l~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~  165 (873)
T KOG4194|consen   95 FEFFYN--LPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP  165 (873)
T ss_pred             HHHHhc--CCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc
Confidence            345677  888888888888887       55554   456899999999998887888899999999999999998333


Q ss_pred             ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396           83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI  162 (456)
Q Consensus        83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  162 (456)
                      -.+|..-. ++++|+|++|.|+..-...|.++.+|.+|.|+.|+++...+..|..+++|+.|+|..|+|.-.---.|.++
T Consensus       166 ~~sfp~~~-ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  166 KPSFPAKV-NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             CCCCCCCC-CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            34555545 79999999999998888889999999999999999997777788889999999999999874445678899


Q ss_pred             CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396          163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI  242 (456)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~  242 (456)
                      ++|+.|.|..|.+.......|  ..+.++++|+|+.|+++ .+...++.++..|+.|++++|.+-..-...+        
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--------  313 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--------  313 (873)
T ss_pred             hhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchh--------
Confidence            999999999999888766666  77889999999999988 7777888889999999998887633222111        


Q ss_pred             ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhc------------------------cCCCCeEeCCC
Q 038396          243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN------------------------LKGLQVLNLDN  298 (456)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~------------------------l~~L~~L~L~~  298 (456)
                                         .+.++|++|+|+.|++++..+..|..                        +++|++|||++
T Consensus       314 -------------------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  314 -------------------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS  374 (873)
T ss_pred             -------------------hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence                               12344555555555555555555444                        45555555555


Q ss_pred             ccccccCCc---cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCC
Q 038396          299 NNLQGHIPS---CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCG  375 (456)
Q Consensus       299 n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~  375 (456)
                      |.++..+.+   .|.++++|+.|++.+|+|.......|.+++.|++|||.+|.|...-|.+..-..+..+.+..-..+|+
T Consensus       375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD  454 (873)
T ss_pred             CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence            555433322   34455666666666666654444556666666666666666665555432222455555666667899


Q ss_pred             CCCCC
Q 038396          376 RPLSK  380 (456)
Q Consensus       376 ~~~~~  380 (456)
                      |.+.+
T Consensus       455 Cql~W  459 (873)
T KOG4194|consen  455 CQLKW  459 (873)
T ss_pred             ccHHH
Confidence            97665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-36  Score=277.83  Aligned_cols=345  Identities=21%  Similarity=0.220  Sum_probs=272.5

Q ss_pred             CCCEEEccCCCCCC--CCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           16 YLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~--~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      +-+.||.+++.+..  ...+.|.+   ++..+.|++++|.+..+.+..|.++++|+++++.+|.++ .+|....... +|
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~l---p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg-hl  127 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFL---PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG-HL  127 (873)
T ss_pred             CceeeecCccccccccccccCCcC---ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccc-ce
Confidence            45678999999873  22334444   457788999999999999999999999999999999998 8887544444 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      +.|+|.+|.|+.+..+.+..++.|+.||||.|.|+.+.-.+|..-.++++|+|++|.|+....+.|..+.+|.+|.|+.|
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            99999999999888888999999999999999999776677888789999999999999888889999999999999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS  253 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (456)
                      +++.++...|  .++++|+.|+|..|+|. .+....|.++++|+.+.+..|.+.....+.|-....    .....+....
T Consensus       208 rittLp~r~F--k~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k----me~l~L~~N~  280 (873)
T KOG4194|consen  208 RITTLPQRSF--KRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK----MEHLNLETNR  280 (873)
T ss_pred             cccccCHHHh--hhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecc----cceeecccch
Confidence            9998877666  78999999999999997 665667899999999999888775444333221110    0000000000


Q ss_pred             cC-cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396          254 KG-RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ  332 (456)
Q Consensus       254 ~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  332 (456)
                      .. ....+.--+..|+.|+||+|.|..+.++.++..++|++|+|++|+|+...+..|..+..|++|+|++|.++..-...
T Consensus       281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence            00 00111112567999999999999999999999999999999999999888888999999999999999988666677


Q ss_pred             hhcCCCCCEEeccCCcCcccCCCC----CCCCCCCCcccCCCCC
Q 038396          333 LVEFTFLEFFDVSDNYLTGAIPLG----KQFATFDNTSFDGNSG  372 (456)
Q Consensus       333 l~~l~~L~~L~ls~N~l~~~~p~~----~~~~~l~~~~~~~n~~  372 (456)
                      |..+++|+.|||++|.++..+..+    ..++.++.+.+.||..
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence            888889999999999988777653    2356666777777753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-33  Score=263.11  Aligned_cols=331  Identities=27%  Similarity=0.351  Sum_probs=272.6

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc-ccchhhhcCCCCCeeecccCcCcccc
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG-EIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      .+|+.+..  +.+|++|.+++|+++   .+.|.+.. ++.|+.+++.+|++.. -+|..+..+..|+.||||+|+++ ..
T Consensus        46 ~vPeEL~~--lqkLEHLs~~HN~L~---~vhGELs~-Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev  118 (1255)
T KOG0444|consen   46 QVPEELSR--LQKLEHLSMAHNQLI---SVHGELSD-LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV  118 (1255)
T ss_pred             hChHHHHH--HhhhhhhhhhhhhhH---hhhhhhcc-chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc
Confidence            47888988  999999999999987   34444433 7889999999999863 46778888999999999999998 88


Q ss_pred             ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396           83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI  162 (456)
Q Consensus        83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  162 (456)
                      |..+.... ++-+|+||+|+|.++....|.+++.|-.||||+|++. .+|..+..+..|++|+|++|.+...--..+-.+
T Consensus       119 P~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm  196 (1255)
T KOG0444|consen  119 PTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM  196 (1255)
T ss_pred             chhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence            99998887 8999999999999666667888999999999999998 778889999999999999998864333344456


Q ss_pred             CCCCEEEccCCcccc-cCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccc
Q 038396          163 PNLNVLILRSNKFYG-IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL  241 (456)
Q Consensus       163 ~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~  241 (456)
                      ++|+.|.+++.+-+- -.|..+  ..+.+|..+|+|.|.+. .+| .++..+.+|+.|+++.|.+......         
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~---------  263 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-IVP-ECLYKLRNLRRLNLSGNKITELNMT---------  263 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-cch-HHHhhhhhhheeccCcCceeeeecc---------
Confidence            778888888865432 222233  67889999999999997 666 5678899999999999877322110         


Q ss_pred             cccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccc-ccCCccccCCCCCCeeeC
Q 038396          242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLDL  320 (456)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L  320 (456)
                                         .....+|++|+||.|+++. +|.+++.++.|+.|.+.+|+++ .-+|..++.+..|+.+..
T Consensus       264 -------------------~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  264 -------------------EGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             -------------------HHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence                               0113569999999999987 7889999999999999999987 457999999999999999


Q ss_pred             CCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396          321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       321 s~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      ++|.+. .+|+.++.+..|+.|.|++|++- .+|.+ ..++.+..+++..||.+..+|-
T Consensus       324 anN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  324 ANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            999998 89999999999999999999997 45555 6788899999999998876654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=1.6e-31  Score=238.54  Aligned_cols=315  Identities=27%  Similarity=0.344  Sum_probs=164.7

Q ss_pred             CCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396           43 ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL  122 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  122 (456)
                      .+..++..+|+++ ..|.++.++..|..|++.+|+++ .+|+..-.+. .|++||...|-++ .+|..++.+.+|+-|++
T Consensus       138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~-~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMK-RLKHLDCNSNLLE-TLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHH-HHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence            3344444444444 33334444444444444444444 3333333343 4555555555555 44555666666666666


Q ss_pred             cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCcccc-CCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG-TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      ..|++. ..| .|.+|..|.+|+++.|+|. .+|.+.. .++++..||++.|++...+.+ .  +.+.+|.+||+|+|.+
T Consensus       214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde-~--clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-I--CLLRSLERLDLSNNDI  287 (565)
T ss_pred             hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH-H--HHhhhhhhhcccCCcc
Confidence            666665 444 4666666666666666665 4444433 566666667776666655322 2  4556666677777766


Q ss_pred             cCCCChhhhhCccccccccccCccccc---------------cccC----------------------------------
Q 038396          202 TGKLPSKSFLCLDAMKIVNTSQLRYLQ---------------DVIS----------------------------------  232 (456)
Q Consensus       202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~---------------~~~~----------------------------------  232 (456)
                      + .+|.+ ++++ +|+.+.+.+|+.-.               +...                                  
T Consensus       288 s-~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t  364 (565)
T KOG0472|consen  288 S-SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT  364 (565)
T ss_pred             c-cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence            6 55543 4455 55555555443310               0000                                  


Q ss_pred             --------CCCCcccccccccc---ceeEeeccCcccc---------------------------cccccccccEEEccC
Q 038396          233 --------PYGQVSTDLISTYD---YSLIMNSKGRMMT---------------------------YNKIPDILTGIILSS  274 (456)
Q Consensus       233 --------~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------------------~~~~~~~L~~L~Ls~  274 (456)
                              ....++...+....   .......+....+                           ....+++|+.|+|++
T Consensus       365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N  444 (565)
T KOG0472|consen  365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN  444 (565)
T ss_pred             hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc
Confidence                    00000000000000   0000000001111                           111234455566666


Q ss_pred             CCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396          275 NRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       275 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      |-+.+ +|..++.+..|+.||++.|++. .+|.++..+..++.+-.++|++....|+.+..+.+|..||+.+|.+....|
T Consensus       445 N~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp  522 (565)
T KOG0472|consen  445 NLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP  522 (565)
T ss_pred             chhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence            55554 4555555555666666666655 555555555555555555556654555558888889999999999886666


Q ss_pred             CCCCCCCCCCcccCCCCC
Q 038396          355 LGKQFATFDNTSFDGNSG  372 (456)
Q Consensus       355 ~~~~~~~l~~~~~~~n~~  372 (456)
                      .-+.++.+..+.+.|||+
T Consensus       523 ~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  523 ILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhccccceeEEEecCCcc
Confidence            667888888888888885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.4e-30  Score=241.89  Aligned_cols=281  Identities=28%  Similarity=0.385  Sum_probs=212.9

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcc
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG   80 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   80 (456)
                      .||+.+..  +..|..||||+|+++       .+|..   .+++.+|+||+|+|..+.-..|.++..|-.||||+|++. 
T Consensus        94 GiP~diF~--l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-  163 (1255)
T KOG0444|consen   94 GIPTDIFR--LKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-  163 (1255)
T ss_pred             CCCchhcc--cccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence            47778878  888888888888887       66655   567788888888888555556778888888888888887 


Q ss_pred             ccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCc-ccCCccccCCCCCcEEeCcCCcCCcCCCccc
Q 038396           81 VLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSLVNCSKLEFLDLGNNQISDTFPSWL  159 (456)
Q Consensus        81 ~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  159 (456)
                      .+|..+..+. .|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++.++.+|..+|+|.|.+. ..|+.+
T Consensus       164 ~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl  241 (1255)
T KOG0444|consen  164 MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL  241 (1255)
T ss_pred             hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence            7787788887 7888888888776544445566778888888877543 357778888888888888888887 778888


Q ss_pred             cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccc
Q 038396          160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST  239 (456)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~  239 (456)
                      -.+++|+.|+|++|+++....   ......+|++|++|.|+++ .+|.. ...++.                        
T Consensus       242 y~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~k------------------------  292 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQLT-VLPDA-VCKLTK------------------------  292 (1255)
T ss_pred             hhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccchhc-cchHH-HhhhHH------------------------
Confidence            888888888888888876632   2245568888888888888 77743 444444                        


Q ss_pred             cccccccceeEeeccCcccccccccccccEEEccCCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCee
Q 038396          240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL  318 (456)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  318 (456)
                                                 |+.|++.+|+++- -+|..++.+.+|+++..++|++. ..|+.+..+..|+.|
T Consensus       293 ---------------------------L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  293 ---------------------------LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             ---------------------------HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence                                       5555555555541 16777888888888888888887 888888888888888


Q ss_pred             eCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396          319 DLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       319 ~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      .|++|++. .+|+.+.-++.|+.||+..|+-.-..|
T Consensus       345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            88888887 778888888888888888887553333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=3.5e-30  Score=230.01  Aligned_cols=295  Identities=24%  Similarity=0.302  Sum_probs=176.8

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +.++..+++.+|+++...|+.+ +++.|++||+..|.++ .+|+.++.+. +|+.|++.+|+|. ..| .|.++..|++|
T Consensus       159 ~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~-~L~~LyL~~Nki~-~lP-ef~gcs~L~El  233 (565)
T KOG0472|consen  159 LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLE-SLELLYLRRNKIR-FLP-EFPGCSLLKEL  233 (565)
T ss_pred             HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchh-hhHHHHhhhcccc-cCC-CCCccHHHHHH
Confidence            4556667777777774444333 3777777777777766 6666676666 6777777777666 444 45566666666


Q ss_pred             eccCCcCcccCCccc-cCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396          121 DLSHNLFQGRIPRSL-VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN  199 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n  199 (456)
                      +++.|++. .+|... ..+.+|..||+.+|+++ ..|+.+..+.+|++||+++|.+++.+.   ..+++ +|+.|-+.+|
T Consensus       234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~---sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY---SLGNL-HLKFLALEGN  307 (565)
T ss_pred             HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc---ccccc-eeeehhhcCC
Confidence            66666555 333332 25555555566666555 445555555555555555555555422   11344 4555555555


Q ss_pred             cC-----------------------------------------------------------------cCCCChhhhhCcc
Q 038396          200 RF-----------------------------------------------------------------TGKLPSKSFLCLD  214 (456)
Q Consensus       200 ~l-----------------------------------------------------------------~~~~~~~~~~~l~  214 (456)
                      ++                                                                 + .+|...|..-+
T Consensus       308 PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~  386 (565)
T KOG0472|consen  308 PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAK  386 (565)
T ss_pred             chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhh
Confidence            43                                                                 3 34433333221


Q ss_pred             --ccccccccCcccccc-------------ccCCCC--Cc-cccccccccceeEeeccC----cccccccccccccEEEc
Q 038396          215 --AMKIVNTSQLRYLQD-------------VISPYG--QV-STDLISTYDYSLIMNSKG----RMMTYNKIPDILTGIIL  272 (456)
Q Consensus       215 --~l~~l~l~~~~~~~~-------------~~~~~~--~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~L  272 (456)
                        -...++++.|++...             +.....  .. +..+.+.....+..-.+.    ...++.. ...|+.|++
T Consensus       387 ~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~-lv~Lq~Lnl  465 (565)
T KOG0472|consen  387 SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS-LVRLQTLNL  465 (565)
T ss_pred             hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh-hhhhheecc
Confidence              122233333332110             000000  00 001111111111111111    1122222 345999999


Q ss_pred             cCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396          273 SSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       273 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~  350 (456)
                      +.|.+.. .|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++.+|++|++++|+|.
T Consensus       466 S~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  466 SFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999987 7888888888999988999999777888999999999999999998 78899999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=3.4e-27  Score=231.06  Aligned_cols=345  Identities=23%  Similarity=0.285  Sum_probs=231.9

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCC-----------------CCC-------------------cCccCCCCCCCCCcE-
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLT-----------------SSN-------------------NLQGPLPVPPPETIL-   46 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~-------------------~l~~~~~~~~~~L~~-   46 (456)
                      ..|..+..  +++|++||+|.|++.                 +.|                   .+.+.++.....+++ 
T Consensus       105 ~lP~~~~~--lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~  182 (1081)
T KOG0618|consen  105 SLPASISE--LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQ  182 (1081)
T ss_pred             cCchhHHh--hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhee
Confidence            56888888  899999999999887                 111                   111111111222222 


Q ss_pred             EEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCc
Q 038396           47 YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL  126 (456)
Q Consensus        47 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~  126 (456)
                      |+|.+|.+. .  -.+..+.+|+.|.+..|++....   +. . ++|+.|+.++|.++...+.  .--.+|+++++++|+
T Consensus       183 ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~---~~-g-~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~  252 (1081)
T KOG0618|consen  183 LDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE---IS-G-PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN  252 (1081)
T ss_pred             eecccchhh-h--hhhhhccchhhhhhhhcccceEE---ec-C-cchheeeeccCcceeeccc--cccccceeeecchhh
Confidence            455555444 1  12344445555555555544111   01 1 2678888888887743332  234689999999999


Q ss_pred             CcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396          127 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       127 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  206 (456)
                      ++ .+|+++..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+..+++..   ..+..|++|+|..|.+. .+|
T Consensus       253 l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~l---e~~~sL~tLdL~~N~L~-~lp  326 (1081)
T KOG0618|consen  253 LS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFL---EGLKSLRTLDLQSNNLP-SLP  326 (1081)
T ss_pred             hh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcc---cccceeeeeeehhcccc-ccc
Confidence            99 56689999999999999999996 77888888889999999999998875432   56788999999999997 788


Q ss_pred             hhhhhCccc-cccccccCccccccccCCCCCcc-ccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchh
Q 038396          207 SKSFLCLDA-MKIVNTSQLRYLQDVISPYGQVS-TDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTS  284 (456)
Q Consensus       207 ~~~~~~l~~-l~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  284 (456)
                      ...+..... +..++.+.++.-...  .+.+.. ......+..  ................+|+.|+|++|++...+...
T Consensus       327 ~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~Lyla--nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~  402 (1081)
T KOG0618|consen  327 DNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLA--NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK  402 (1081)
T ss_pred             hHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHh--cCcccccchhhhccccceeeeeecccccccCCHHH
Confidence            765555443 555555544431110  000000 000000000  00000111222233677999999999999888888


Q ss_pred             hhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCccc-CCCCCCCCCCC
Q 038396          285 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGA-IPLGKQFATFD  363 (456)
Q Consensus       285 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~l~  363 (456)
                      +.++..|++|+||+|+++ .+|..+..++.|+.|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....++++
T Consensus       403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk  479 (1081)
T KOG0618|consen  403 LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK  479 (1081)
T ss_pred             HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence            899999999999999999 88899999999999999999998 777 788999999999999999843 44444447899


Q ss_pred             CcccCCCCCC
Q 038396          364 NTSFDGNSGL  373 (456)
Q Consensus       364 ~~~~~~n~~l  373 (456)
                      .+++.||.++
T Consensus       480 yLdlSGN~~l  489 (1081)
T KOG0618|consen  480 YLDLSGNTRL  489 (1081)
T ss_pred             eeeccCCccc
Confidence            9999999963

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=6.6e-27  Score=208.75  Aligned_cols=309  Identities=21%  Similarity=0.215  Sum_probs=215.2

Q ss_pred             CCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE-EccCCccceeCCccccC
Q 038396           36 PLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL-DLQGNNFFGTIPDTFIK  113 (456)
Q Consensus        36 ~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L-~Ls~n~i~~~~~~~~~~  113 (456)
                      .+|.. ++..+.+.|..|.|+.+.+.+|..+++|+.||||+|+|+.+-|++|.++. .|..| +.++|+|+.+..+.|.+
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~g  138 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGG  138 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhh
Confidence            56766 66788899999999988888999999999999999999988899999988 45544 45559999777788999


Q ss_pred             CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCC----------CCC
Q 038396          114 ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK----------EPR  183 (456)
Q Consensus       114 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~  183 (456)
                      +..|+.|.+.-|++.-+....|..+++|..|.+-+|.+..+.-..|..+..++.+.+..|.+...-.          .+.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            9999999999999988888889999999999999999985545588889999999998887432200          000


Q ss_pred             CccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccc
Q 038396          184 TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKI  263 (456)
Q Consensus       184 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (456)
                      ..+.+....-..+.++++. .++...|...  ++.+                      .+..... ......-.....+.
T Consensus       219 etsgarc~~p~rl~~~Ri~-q~~a~kf~c~--~esl----------------------~s~~~~~-d~~d~~cP~~cf~~  272 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRIN-QEDARKFLCS--LESL----------------------PSRLSSE-DFPDSICPAKCFKK  272 (498)
T ss_pred             hcccceecchHHHHHHHhc-ccchhhhhhh--HHhH----------------------HHhhccc-cCcCCcChHHHHhh
Confidence            0112222222223333332 2222211111  0000                      0000000 00000011111334


Q ss_pred             cccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEe
Q 038396          264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD  343 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  343 (456)
                      +++|++|+|++|+++++-+.+|.++..+++|.|..|++.......|.++..|+.|+|++|+|+...|..|..+.+|..|+
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~  352 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN  352 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence            67788899999999888888888888999999999988877777888888899999999999888888888888899999


Q ss_pred             ccCCcCcccCCCCCCCCCCCCcccCCCC
Q 038396          344 VSDNYLTGAIPLGKQFATFDNTSFDGNS  371 (456)
Q Consensus       344 ls~N~l~~~~p~~~~~~~l~~~~~~~n~  371 (456)
                      +-.|++.+.+-..+.-.+++.-+-.|||
T Consensus       353 l~~Np~~CnC~l~wl~~Wlr~~~~~~~~  380 (498)
T KOG4237|consen  353 LLSNPFNCNCRLAWLGEWLRKKSVVGNP  380 (498)
T ss_pred             hccCcccCccchHHHHHHHhhCCCCCCC
Confidence            9888888776554433334333333443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.92  E-value=3.4e-24  Score=216.01  Aligned_cols=262  Identities=23%  Similarity=0.310  Sum_probs=200.1

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      ..-..|||+.|.|+       .+|.. .++++.|++++|+++ .+|.   ..++|++|++++|+++ .+|..    +++|
T Consensus       201 ~~~~~LdLs~~~Lt-------sLP~~l~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL  264 (788)
T PRK15387        201 NGNAVLNVGESGLT-------TLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGL  264 (788)
T ss_pred             CCCcEEEcCCCCCC-------cCCcchhcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----cccc
Confidence            45778999999987       45554 467999999999999 4554   2578999999999998 56642    2389


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      +.|++++|.++ .+|..   ..+|+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|
T Consensus       265 ~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N  332 (788)
T PRK15387        265 LELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN  332 (788)
T ss_pred             ceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccC
Confidence            99999999988 44543   357889999999998 4554   24789999999999985 4532   246888999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS  253 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (456)
                      .+++++.  +    ..+|+.|++++|+++ .+|..    ..+++.|++++|.+..                         
T Consensus       333 ~L~~LP~--l----p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-------------------------  376 (788)
T PRK15387        333 QLTSLPT--L----PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-------------------------  376 (788)
T ss_pred             ccccccc--c----ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-------------------------
Confidence            9987642  1    257999999999998 66642    2355666666654410                         


Q ss_pred             cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396          254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL  333 (456)
Q Consensus       254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l  333 (456)
                            +...+..|+.|++++|.+++ +|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+|+ .+|..+
T Consensus       377 ------LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl  441 (788)
T PRK15387        377 ------LPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESL  441 (788)
T ss_pred             ------CcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHH
Confidence                  11124569999999999997 4432   368999999999999 466543   47889999999998 789999


Q ss_pred             hcCCCCCEEeccCCcCcccCCC
Q 038396          334 VEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       334 ~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      ..+++|+.|++++|++++..|.
T Consensus       442 ~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhccCCCeEECCCCCCCchHHH
Confidence            9999999999999999987664

>PLN03210 Resistant to P

Probab=99.90  E-value=1.4e-22  Score=219.27  Aligned_cols=330  Identities=20%  Similarity=0.266  Sum_probs=216.9

Q ss_pred             hhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC----CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            7 KWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP----PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         7 ~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~----~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      ..|..  |++|+.|.+.++.....+.....+|..    +.+|+.|.+.++.++ .+|..| ...+|++|++++|.+. .+
T Consensus       552 ~aF~~--m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        552 NAFKG--MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             HHHhc--CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence            35777  999999999877654222333334432    567999999999988 667776 5789999999999998 78


Q ss_pred             ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396           83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI  162 (456)
Q Consensus        83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  162 (456)
                      +.++..+. +|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++
T Consensus       627 ~~~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        627 WDGVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            88888888 899999998765546664 7889999999999987666889999999999999999976545677655 78


Q ss_pred             CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396          163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI  242 (456)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~  242 (456)
                      ++|+.|++++|......+.     ...+|++|++++|.+. .+|...  .+++|..|.+..+...... ........   
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~-~~~~~l~~---  771 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLW-ERVQPLTP---  771 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhcc-ccccccch---
Confidence            9999999999865443332     2468999999999987 777532  4666766666553321100 00000000   


Q ss_pred             ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccc-------------
Q 038396          243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL-------------  309 (456)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-------------  309 (456)
                                      .....+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+             
T Consensus       772 ----------------~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c  835 (1153)
T PLN03210        772 ----------------LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC  835 (1153)
T ss_pred             ----------------hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence                            000112345555555544444444445555555555555443222333222             


Q ss_pred             -------cCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC-CcCcccCCCCCCCCCCCCcccCCCCCC
Q 038396          310 -------GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD-NYLTGAIPLGKQFATFDNTSFDGNSGL  373 (456)
Q Consensus       310 -------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~-N~l~~~~p~~~~~~~l~~~~~~~n~~l  373 (456)
                             ...++|++|+|++|.++ .+|..+..+++|+.|++++ |.+.+..+....++.+..+.+.+++.+
T Consensus       836 ~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        836 SRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence                   01245666777777776 5677777788888888877 444443333345666666666666554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=7.4e-26  Score=202.06  Aligned_cols=310  Identities=20%  Similarity=0.184  Sum_probs=199.1

Q ss_pred             EEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC-C
Q 038396           47 YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH-N  125 (456)
Q Consensus        47 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-N  125 (456)
                      .+-++-.++ .+|..+.  +.-.+++|..|+|+...|.+|..+. +|+.|||++|.|+.+.|++|.++.+|..|-+.+ |
T Consensus        51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            344444455 4454332  3556677888888744455666676 788888888888877778888877776666555 7


Q ss_pred             cCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCC
Q 038396          126 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL  205 (456)
Q Consensus       126 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~  205 (456)
                      +|+......|.++..|+.|.+.-|++.-...++|..+++|..|.+.+|.+..+....+  ..+..++.+.+..|.+... 
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icd-  203 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICD-  203 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc--cchhccchHhhhcCccccc-
Confidence            7776666677788888888888887776667777778888888887877776655444  5666777777777764311 


Q ss_pred             ChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEE---EccCCCCCcc-C
Q 038396          206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI---ILSSNRFDRV-I  281 (456)
Q Consensus       206 ~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L---~Ls~n~l~~~-~  281 (456)
                           .+++.+.... ..+.      ..+.......+  +.....   ........++...++.+   ..+.+....+ +
T Consensus       204 -----CnL~wla~~~-a~~~------ietsgarc~~p--~rl~~~---Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP  266 (498)
T KOG4237|consen  204 -----CNLPWLADDL-AMNP------IETSGARCVSP--YRLYYK---RINQEDARKFLCSLESLPSRLSSEDFPDSICP  266 (498)
T ss_pred             -----cccchhhhHH-hhch------hhcccceecch--HHHHHH---HhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence                 1111110000 0000      00000000000  000000   00000001111112222   1223323333 4


Q ss_pred             chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCC
Q 038396          282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFA  360 (456)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~  360 (456)
                      ...|..+++|++|+|++|+++++-+.+|.+...+++|.|..|+|.......|.++..|+.|+|.+|+|++.-|-. ....
T Consensus       267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            467899999999999999999999999999999999999999998777788999999999999999999888854 3455


Q ss_pred             CCCCcccCCCCCCCCCCCCC
Q 038396          361 TFDNTSFDGNSGLCGRPLSK  380 (456)
Q Consensus       361 ~l~~~~~~~n~~lc~~~~~~  380 (456)
                      .+..+.+.+||+.|+|.+.+
T Consensus       347 ~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             eeeeeehccCcccCccchHH
Confidence            66777899999999997544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-25  Score=219.19  Aligned_cols=270  Identities=26%  Similarity=0.306  Sum_probs=172.2

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      -++++.|+.++|.++...+..  --.+|+++++++|+++ .+|+.++.+. +|+.+++.+|.++ .+|..+....+|+.|
T Consensus       218 g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSL  292 (1081)
T ss_pred             CcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHH
Confidence            456666666677666332221  1246777777777777 6667777777 7777777777775 666666677777777


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC-CCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN-LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN  199 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n  199 (456)
                      .+.+|.+. .+|....+++.|++|||..|.|....+..+.-... |+.|+.+.|++...+...-  ..++.|+.|.+.+|
T Consensus       293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e--~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE--NNHAALQELYLANN  369 (1081)
T ss_pred             Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc--hhhHHHHHHHHhcC
Confidence            77777777 55666667777777777777776332222222222 5556666666554432211  34455666666666


Q ss_pred             cCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCc
Q 038396          200 RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR  279 (456)
Q Consensus       200 ~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  279 (456)
                      .++.. ....+.+..+|++|++++|++-..-...                           ..-++.|++|+||+|+++.
T Consensus       370 ~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~fpas~---------------------------~~kle~LeeL~LSGNkL~~  421 (1081)
T KOG0618|consen  370 HLTDS-CFPVLVNFKHLKVLHLSYNRLNSFPASK---------------------------LRKLEELEELNLSGNKLTT  421 (1081)
T ss_pred             ccccc-chhhhccccceeeeeecccccccCCHHH---------------------------HhchHHhHHHhcccchhhh
Confidence            66532 1123555666666666665441111111                           1113458888888888887


Q ss_pred             cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcC
Q 038396          280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL  349 (456)
Q Consensus       280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l  349 (456)
                       +|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-.....-++|++||++||..
T Consensus       422 -Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  422 -LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             -hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence             5688888888999999999888 667 678888899999999988754332222337899999998874

>PLN03210 Resistant to P

Probab=99.90  E-value=5.1e-22  Score=214.85  Aligned_cols=296  Identities=19%  Similarity=0.214  Sum_probs=204.3

Q ss_pred             CCChhhhhhcC-CCCCEEEccCCCCCCCCcCccCCCCC--CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcc
Q 038396            4 KIPKWLLDPSM-QYLNALNLSHNLLTSSNNLQGPLPVP--PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG   80 (456)
Q Consensus         4 ~ip~~~~~~~l-~~L~~L~Ls~N~l~~~~~l~~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   80 (456)
                      .+|+.|..  + .+|+.|++.++.++       .+|..  +.+|+.|++++|.+. .++..+..+++|+.|+|+++....
T Consensus       579 ~lp~~~~~--lp~~Lr~L~~~~~~l~-------~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~  648 (1153)
T PLN03210        579 HLPEGFDY--LPPKLRLLRWDKYPLR-------CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLK  648 (1153)
T ss_pred             ecCcchhh--cCcccEEEEecCCCCC-------CCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcC
Confidence            45666666  4 35888888888776       44433  567888888888877 566667778888888887765433


Q ss_pred             ccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCcccc
Q 038396           81 VLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG  160 (456)
Q Consensus        81 ~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  160 (456)
                      .+|. +..++ +|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|......|..  
T Consensus       649 ~ip~-ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--  723 (1153)
T PLN03210        649 EIPD-LSMAT-NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--  723 (1153)
T ss_pred             cCCc-cccCC-cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--
Confidence            5664 55666 78888888776555677777788888888888765444566554 6777777777777654444432  


Q ss_pred             CCCCCCEEEccCCcccccCCCC---------------------------CCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396          161 TIPNLNVLILRSNKFYGIIKEP---------------------------RTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL  213 (456)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~~~~---------------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l  213 (456)
                       ..+|++|++++|.+..++...                           ......++|+.|++++|...+.+|.. +.++
T Consensus       724 -~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L  801 (1153)
T PLN03210        724 -STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNL  801 (1153)
T ss_pred             -cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCC
Confidence             346677777777665443210                           00012356777777777666566644 6777


Q ss_pred             cccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCe
Q 038396          214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQV  293 (456)
Q Consensus       214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  293 (456)
                      ++|+.|++++|..+..+...                            ..+++|+.|++++|......|..   .++|+.
T Consensus       802 ~~L~~L~Ls~C~~L~~LP~~----------------------------~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        802 HKLEHLEIENCINLETLPTG----------------------------INLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             CCCCEEECCCCCCcCeeCCC----------------------------CCccccCEEECCCCCcccccccc---ccccCE
Confidence            77777777765542221110                            02567999999998655444442   368999


Q ss_pred             EeCCCccccccCCccccCCCCCCeeeCCCC-cccccCchhhhcCCCCCEEeccCCcC
Q 038396          294 LNLDNNNLQGHIPSCLGNLTNLESLDLSNN-RFSGQIPQQLVEFTFLEFFDVSDNYL  349 (456)
Q Consensus       294 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~ls~N~l  349 (456)
                      |+|++|.++ .+|.++..+++|+.|+|++| ++. .+|..+..+++|+.+++++|.-
T Consensus       851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCcc
Confidence            999999998 78999999999999999996 555 6777888999999999999863

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=1.6e-22  Score=203.92  Aligned_cols=257  Identities=25%  Similarity=0.336  Sum_probs=199.1

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      ..-..|+++++.++ .+|..+.  ++|+.|++++|+++ .+|..    +++|++|++++|+++. +|..   .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccccceee
Confidence            34668999999999 6777665  48999999999999 67752    3489999999999994 4543   46899999


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +++|.++ .+|..+   ++|+.|++++|+++ .+|.   ..++|+.|++++|++++++..      ...|+.|++++|.+
T Consensus       269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L  334 (788)
T PRK15387        269 IFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQL  334 (788)
T ss_pred             ccCCchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC------cccccccccccCcc
Confidence            9999998 455433   67899999999998 4554   357899999999999976432      24688999999999


Q ss_pred             cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396          202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI  281 (456)
Q Consensus       202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  281 (456)
                      + .+|..    ..+|+.|++++|.+..                               ++..+.+|+.|++++|.++. +
T Consensus       335 ~-~LP~l----p~~Lq~LdLS~N~Ls~-------------------------------LP~lp~~L~~L~Ls~N~L~~-L  377 (788)
T PRK15387        335 T-SLPTL----PSGLQELSVSDNQLAS-------------------------------LPTLPSELYKLWAYNNRLTS-L  377 (788)
T ss_pred             c-ccccc----ccccceEecCCCccCC-------------------------------CCCCCcccceehhhcccccc-C
Confidence            8 67741    2478888888876521                               11224568999999999997 4


Q ss_pred             chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCC
Q 038396          282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFA  360 (456)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~  360 (456)
                      |..   ..+|+.|++++|+++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|.. ..+.
T Consensus       378 P~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~  445 (788)
T PRK15387        378 PAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLS  445 (788)
T ss_pred             ccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhcc
Confidence            543   357999999999999 45643   358999999999998 467543   46889999999998 56653 5577


Q ss_pred             CCCCcccCCCCCC
Q 038396          361 TFDNTSFDGNSGL  373 (456)
Q Consensus       361 ~l~~~~~~~n~~l  373 (456)
                      .+..+++.+|+..
T Consensus       446 ~L~~LdLs~N~Ls  458 (788)
T PRK15387        446 SETTVNLEGNPLS  458 (788)
T ss_pred             CCCeEECCCCCCC
Confidence            8888899999864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.89  E-value=1.2e-22  Score=206.04  Aligned_cols=246  Identities=24%  Similarity=0.382  Sum_probs=178.5

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      .+...|++++++++       .+|.. ++.++.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|
T Consensus       178 ~~~~~L~L~~~~Lt-------sLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L  243 (754)
T PRK15370        178 NNKTELRLKILGLT-------TIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTI  243 (754)
T ss_pred             cCceEEEeCCCCcC-------cCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccc
Confidence            45788999999887       44542 567899999999998 4565543  58999999999998 6777654   279


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      +.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|
T Consensus       244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             cEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCC
Confidence            99999999988 5666553  57899999999998 5666554  589999999999884 454432  47888899999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS  253 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (456)
                      .++.++..     ..++|+.|++++|.++ .+|...                                            
T Consensus       315 ~Lt~LP~~-----l~~sL~~L~Ls~N~Lt-~LP~~l--------------------------------------------  344 (754)
T PRK15370        315 SLTALPET-----LPPGLKTLEAGENALT-SLPASL--------------------------------------------  344 (754)
T ss_pred             ccccCCcc-----ccccceeccccCCccc-cCChhh--------------------------------------------
Confidence            88865322     2367888889888887 455321                                            


Q ss_pred             cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396          254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL  333 (456)
Q Consensus       254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l  333 (456)
                                +++|+.|++++|+++. +|..+.  +.|+.|+|++|+++ .+|..+.  ..|+.|++++|+++ .+|..+
T Consensus       345 ----------~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        345 ----------PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             ----------cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence                      2347788888888775 444442  57888888888887 5565554  36788888888887 455443


Q ss_pred             ----hcCCCCCEEeccCCcCc
Q 038396          334 ----VEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       334 ----~~l~~L~~L~ls~N~l~  350 (456)
                          ..++.+..+++.+|+++
T Consensus       408 ~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        408 PHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhcCCCccEEEeeCCCcc
Confidence                33467788888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=1.5e-21  Score=198.16  Aligned_cols=232  Identities=27%  Similarity=0.430  Sum_probs=179.5

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      .+|..+    .++|+.|+|++|+|+       .+|.. .++|+.|++++|+++ .+|..+.  .+|+.|+|++|.++ .+
T Consensus       192 sLP~~I----p~~L~~L~Ls~N~Lt-------sLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~L  256 (754)
T PRK15370        192 TIPACI----PEQITTLILDNNELK-------SLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-EL  256 (754)
T ss_pred             cCCccc----ccCCcEEEecCCCCC-------cCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cC
Confidence            456555    357999999999998       34443 568999999999999 5676554  47999999999998 78


Q ss_pred             ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396           83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI  162 (456)
Q Consensus        83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  162 (456)
                      |..+.  . +|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+  .
T Consensus       257 P~~l~--s-~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~  324 (754)
T PRK15370        257 PERLP--S-ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--P  324 (754)
T ss_pred             ChhHh--C-CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--c
Confidence            87764  3 7999999999999 5676554  58999999999999 4565543  579999999999984 55443  3


Q ss_pred             CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396          163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI  242 (456)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~  242 (456)
                      ++|+.|++++|.+++++. .+    .++|+.|++++|.++ .+|...                                 
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~-~l----~~sL~~L~Ls~N~L~-~LP~~l---------------------------------  365 (754)
T PRK15370        325 PGLKTLEAGENALTSLPA-SL----PPELQVLDVSKNQIT-VLPETL---------------------------------  365 (754)
T ss_pred             ccceeccccCCccccCCh-hh----cCcccEEECCCCCCC-cCChhh---------------------------------
Confidence            689999999999987642 22    378999999999998 566321                                 


Q ss_pred             ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccc----cCCCCCCee
Q 038396          243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL----GNLTNLESL  318 (456)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L  318 (456)
                                           ++.|+.|++++|.++.+ |..+.  ..|+.|++++|+++ .+|..+    ..++.+..|
T Consensus       366 ---------------------p~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L  420 (754)
T PRK15370        366 ---------------------PPTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI  420 (754)
T ss_pred             ---------------------cCCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence                                 23488889999988874 44443  36888999999988 555544    345788899


Q ss_pred             eCCCCccc
Q 038396          319 DLSNNRFS  326 (456)
Q Consensus       319 ~Ls~N~l~  326 (456)
                      ++.+|.++
T Consensus       421 ~L~~Npls  428 (754)
T PRK15370        421 IVEYNPFS  428 (754)
T ss_pred             EeeCCCcc
Confidence            99999887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.81  E-value=3.3e-21  Score=181.79  Aligned_cols=161  Identities=24%  Similarity=0.185  Sum_probs=78.7

Q ss_pred             CCCCcEEEccCCccccc----cchhhhcCCCCCeeecccCcCcc------ccChhhhhCCCCCcEEEccCCccceeCCcc
Q 038396           41 PPETILYLVSNNSLTGE----IPSWICNLNTVKNLVLSHNNLSG------VLPQCLGNFSDELSVLDLQGNNFFGTIPDT  110 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~  110 (456)
                      +..++.++++++.+++.    ++..+...++|++|+++++.+.+      .++..+..+. +|++|++++|.+.+..+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC-GLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC-ceeEEEccCCCCChhHHHH
Confidence            34466666666665322    33344455556666666665541      2233444444 5666666666665433333


Q ss_pred             ccCCCC---ccEEeccCCcCcc----cCCccccCC-CCCcEEeCcCCcCCcC----CCccccCCCCCCEEEccCCccccc
Q 038396          111 FIKESR---LGVIDLSHNLFQG----RIPRSLVNC-SKLEFLDLGNNQISDT----FPSWLGTIPNLNVLILRSNKFYGI  178 (456)
Q Consensus       111 ~~~l~~---L~~L~Ls~N~l~~----~~~~~l~~l-~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~  178 (456)
                      +..+.+   |++|++++|++++    .+...+..+ ++|++|++++|.+++.    .+..+..+++|++|++++|.+.+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            333333   6666666666552    122233444 5666666666665522    122334445566666666655431


Q ss_pred             CCCCC--CccCCCCccEEecccccCc
Q 038396          179 IKEPR--TDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       179 ~~~~~--~~~~l~~L~~L~ls~n~l~  202 (456)
                      ....+  ....+++|+.|++++|.++
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccC
Confidence            10000  0122345666666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=7.9e-21  Score=179.23  Aligned_cols=257  Identities=25%  Similarity=0.215  Sum_probs=168.0

Q ss_pred             EEEccCCccc-cccchhhhcCCCCCeeecccCcCccc----cChhhhhCCCCCcEEEccCCccce------eCCccccCC
Q 038396           46 LYLVSNNSLT-GEIPSWICNLNTVKNLVLSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFFG------TIPDTFIKE  114 (456)
Q Consensus        46 ~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~------~~~~~~~~l  114 (456)
                      .|+|..+.++ ......+..+.+|++|+++++.+++.    ++..+...+ .|++|+++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4566677776 34456677788899999999998542    444455555 79999999988762      234556778


Q ss_pred             CCccEEeccCCcCcccCCccccCCCC---CcEEeCcCCcCCc----CCCccccCC-CCCCEEEccCCcccccCCC--CCC
Q 038396          115 SRLGVIDLSHNLFQGRIPRSLVNCSK---LEFLDLGNNQISD----TFPSWLGTI-PNLNVLILRSNKFYGIIKE--PRT  184 (456)
Q Consensus       115 ~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~Ls~n~i~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~--~~~  184 (456)
                      ++|+.|++++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++....  ...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            89999999999987655555555555   9999999998873    222345566 8899999999988742111  111


Q ss_pred             ccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccc
Q 038396          185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP  264 (456)
Q Consensus       185 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (456)
                      +..+++|++|++++|.+++.........+.                                                ..
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~------------------------------------------------~~  192 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLK------------------------------------------------AN  192 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHH------------------------------------------------hC
Confidence            245578899999998887421111111111                                                01


Q ss_pred             ccccEEEccCCCCCccC----chhhhccCCCCeEeCCCccccccCCcccc-----CCCCCCeeeCCCCcccc----cCch
Q 038396          265 DILTGIILSSNRFDRVI----PTSIANLKGLQVLNLDNNNLQGHIPSCLG-----NLTNLESLDLSNNRFSG----QIPQ  331 (456)
Q Consensus       265 ~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~----~~~~  331 (456)
                      +.|+.|++++|.+++..    ...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+..
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~  272 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE  272 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence            34777777777776432    23445667788888888877653332222     13678888888887752    2334


Q ss_pred             hhhcCCCCCEEeccCCcCcc
Q 038396          332 QLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       332 ~l~~l~~L~~L~ls~N~l~~  351 (456)
                      .+..+++|+++++++|.++.
T Consensus       273 ~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         273 VLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHhcCCCccEEECCCCCCcH
Confidence            45566778888888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=7.9e-21  Score=151.24  Aligned_cols=159  Identities=28%  Similarity=0.463  Sum_probs=129.0

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +..++.|.+|+|+++ .+|..+..+.+|+.|++++|+++ .+|.++..++ +|+.|+++-|++. +.|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~-klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLP-KLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhch-hhhheecchhhhh-cCccccCCCchhhhh
Confidence            567778888888888 66667888888888888888888 7888888888 7888888888887 788888888888888


Q ss_pred             eccCCcCcc-cCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396          121 DLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN  199 (456)
Q Consensus       121 ~Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n  199 (456)
                      |+++|++.+ .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.++.|.+-..+.+   .+.+..|++|.+.+|
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpke---ig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKE---IGDLTRLRELHIQGN  183 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHH---HHHHHHHHHHhcccc
Confidence            888888874 56777888888888888888886 7788888888888888888887665332   267788888888888


Q ss_pred             cCcCCCChh
Q 038396          200 RFTGKLPSK  208 (456)
Q Consensus       200 ~l~~~~~~~  208 (456)
                      +++ .+|..
T Consensus       184 rl~-vlppe  191 (264)
T KOG0617|consen  184 RLT-VLPPE  191 (264)
T ss_pred             eee-ecChh
Confidence            888 67754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=1.9e-20  Score=149.08  Aligned_cols=159  Identities=30%  Similarity=0.497  Sum_probs=142.1

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChh
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQC   85 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   85 (456)
                      +.+  ++++..|-||+|+++       .+|..   +.+|+.|++++|+|+ ..|..++.++.|+.|++.-|++. .+|.+
T Consensus        29 Lf~--~s~ITrLtLSHNKl~-------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg   97 (264)
T KOG0617|consen   29 LFN--MSNITRLTLSHNKLT-------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG   97 (264)
T ss_pred             ccc--hhhhhhhhcccCcee-------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc
Confidence            556  788999999999998       55554   788999999999999 78889999999999999999998 99999


Q ss_pred             hhhCCCCCcEEEccCCccce-eCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396           86 LGNFSDELSVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN  164 (456)
Q Consensus        86 ~~~l~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  164 (456)
                      |+.++ .|+.||+++|++.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.
T Consensus        98 fgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen   98 FGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             cCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            99998 89999999998874 47888989999999999999998 88899999999999999999987 78999999999


Q ss_pred             CCEEEccCCcccccCCC
Q 038396          165 LNVLILRSNKFYGIIKE  181 (456)
Q Consensus       165 L~~L~L~~n~l~~~~~~  181 (456)
                      |++|++.+|+++-.+|+
T Consensus       175 lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  175 LRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHhcccceeeecChh
Confidence            99999999999876554

>PLN03150 hypothetical protein; Provisional

Probab=99.68  E-value=2.4e-16  Score=159.69  Aligned_cols=118  Identities=36%  Similarity=0.687  Sum_probs=106.1

Q ss_pred             cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396          266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS  345 (456)
Q Consensus       266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls  345 (456)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCC--CCCCCCCcccCCCCCCCCCCCCCCCC
Q 038396          346 DNYLTGAIPLGK--QFATFDNTSFDGNSGLCGRPLSKGCE  383 (456)
Q Consensus       346 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~c~  383 (456)
                      +|+++|.+|...  ....+..+++.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999652  23345567899999999977655564

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.42  E-value=7.3e-15  Score=138.08  Aligned_cols=155  Identities=29%  Similarity=0.496  Sum_probs=110.8

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +......|++.|++. .+|..+..+..|+.+.|..|.+. .+|.+++.+. .|++||++.|+++ ..|..++.++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            455666777788877 67777777777777888888877 7777777777 7888888888877 5666665554 7777


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR  200 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~  200 (456)
                      -+++|+++ .+|..++...+|..||.+.|.+. .+|..++++.+|+.|.++.|++..++++.   . .-.|..||++.|+
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El---~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEEL---C-SLPLIRLDFSCNK  222 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHH---h-CCceeeeecccCc
Confidence            88888877 67777777777888888888776 56667777777777777777776654432   2 2246667777777


Q ss_pred             CcCCCCh
Q 038396          201 FTGKLPS  207 (456)
Q Consensus       201 l~~~~~~  207 (456)
                      +. .+|.
T Consensus       223 is-~iPv  228 (722)
T KOG0532|consen  223 IS-YLPV  228 (722)
T ss_pred             ee-ecch
Confidence            66 5553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=1.1e-14  Score=136.85  Aligned_cols=176  Identities=27%  Similarity=0.376  Sum_probs=151.2

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS   90 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   90 (456)
                      +..-...||+.|++.       .+|..   +..|+.+.+.+|.+. .+|.++.++..|++|||+.|+++ .+|..++.++
T Consensus        74 ltdt~~aDlsrNR~~-------elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp  144 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-------ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP  144 (722)
T ss_pred             ccchhhhhccccccc-------cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence            455667889999886       66665   567888899999998 88999999999999999999998 9999999997


Q ss_pred             CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEc
Q 038396           91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLIL  170 (456)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  170 (456)
                        |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+..+ .|..||+
T Consensus       145 --Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDf  218 (722)
T KOG0532|consen  145 --LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDF  218 (722)
T ss_pred             --ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeec
Confidence              999999999999 78888888999999999999999 78888999999999999999997 667777754 5889999


Q ss_pred             cCCcccccCCCCCCccCCCCccEEecccccCcCCCChh
Q 038396          171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK  208 (456)
Q Consensus       171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  208 (456)
                      +.|++..+   +..+.++..|++|-|.+|.+. .-|..
T Consensus       219 ScNkis~i---Pv~fr~m~~Lq~l~LenNPLq-SPPAq  252 (722)
T KOG0532|consen  219 SCNKISYL---PVDFRKMRHLQVLQLENNPLQ-SPPAQ  252 (722)
T ss_pred             ccCceeec---chhhhhhhhheeeeeccCCCC-CChHH
Confidence            99999876   333489999999999999997 54543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.38  E-value=8.9e-13  Score=127.98  Aligned_cols=198  Identities=37%  Similarity=0.502  Sum_probs=121.2

Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCC-CCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS-KLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      .++++.|.+... ......++.++.|++.+|+++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            466666666322 223344566777777777777 4555555553 7777777777776 44455677777777777777


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS  253 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (456)
                      ++..+.+..   ...+.|+.|++++|.+. .+|... ..                                         
T Consensus       174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-~~-----------------------------------------  207 (394)
T COG4886         174 DLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-EL-----------------------------------------  207 (394)
T ss_pred             hhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-hh-----------------------------------------
Confidence            777664321   14567777777777776 555421 01                                         


Q ss_pred             cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396          254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL  333 (456)
Q Consensus       254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l  333 (456)
                                +..|++|.+++|.+.. .+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++. ++. +
T Consensus       208 ----------~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~  273 (394)
T COG4886         208 ----------LSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-L  273 (394)
T ss_pred             ----------hhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-c
Confidence                      2235555566664333 3445666666677777777766 335566666777777777777763 333 6


Q ss_pred             hcCCCCCEEeccCCcCcccCCC
Q 038396          334 VEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       334 ~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      ..+.+++.|++++|.++...|.
T Consensus       274 ~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         274 GSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccCccCEEeccCccccccchh
Confidence            6667777777777776655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=1.9e-12  Score=125.63  Aligned_cols=174  Identities=34%  Similarity=0.460  Sum_probs=100.4

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCC---C-CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVP---P-PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF   89 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   89 (456)
                      .+.+..|++.+|.++       .++..   . .+|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......
T Consensus       115 ~~~l~~L~l~~n~i~-------~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~  185 (394)
T COG4886         115 LTNLTSLDLDNNNIT-------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL  185 (394)
T ss_pred             ccceeEEecCCcccc-------cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhh
Confidence            345666666666665       22221   2 25666666666666 44445666666666666666666 455444344


Q ss_pred             CCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396           90 SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI  169 (456)
Q Consensus        90 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  169 (456)
                      . .|+.|++++|+++ .+|........|++|.+++|++. ..+..+..+.++..+.+.+|++. ..+..++.++++++|+
T Consensus       186 ~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~  261 (394)
T COG4886         186 S-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD  261 (394)
T ss_pred             h-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence            4 5666666666666 44443334445666666666433 34455666666666666666665 2245556666666666


Q ss_pred             ccCCcccccCCCCCCccCCCCccEEecccccCcCC
Q 038396          170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK  204 (456)
Q Consensus       170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  204 (456)
                      +++|.++.+..  +  ..+.+++.|++++|.+...
T Consensus       262 ~s~n~i~~i~~--~--~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         262 LSNNQISSISS--L--GSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccccccccc--c--cccCccCEEeccCcccccc
Confidence            66666665533  2  4556666666666666533

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=7e-13  Score=121.19  Aligned_cols=211  Identities=22%  Similarity=0.249  Sum_probs=130.5

Q ss_pred             CCCCccEEeccCCcCcccCC--ccccCCCCCcEEeCcCCcCCcCCC--ccccCCCCCCEEEccCCcccccCCCCCCccCC
Q 038396          113 KESRLGVIDLSHNLFQGRIP--RSLVNCSKLEFLDLGNNQISDTFP--SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF  188 (456)
Q Consensus       113 ~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  188 (456)
                      ++.+|+.+.|.+..+. ..+  .....|++++.|||+.|-+....+  .....+|+|+.|+++.|++......... ..+
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL  196 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence            3455666666666655 222  245556666777777666653211  2234566777777777766543332221 345


Q ss_pred             CCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccccccc
Q 038396          189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILT  268 (456)
Q Consensus       189 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  268 (456)
                      ++|+.|.++.|.++..--......+++++.|.+..|.....                           ...-.+++..|+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------------------~~~~~~i~~~L~  249 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------------------KATSTKILQTLQ  249 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------------------ecchhhhhhHHh
Confidence            66777777777665222223345566666666665531000                           001123356699


Q ss_pred             EEEccCCCCCccC-chhhhccCCCCeEeCCCcccccc-CCcc-----ccCCCCCCeeeCCCCcccc-cCchhhhcCCCCC
Q 038396          269 GIILSSNRFDRVI-PTSIANLKGLQVLNLDNNNLQGH-IPSC-----LGNLTNLESLDLSNNRFSG-QIPQQLVEFTFLE  340 (456)
Q Consensus       269 ~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~  340 (456)
                      +|||++|.+-... -.....++.|+.|+++.+.+... .|+.     ...+++|++|+++.|+|.. ..-..+..+++|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            9999999887643 24567899999999999998754 2332     3567899999999999952 1124466788899


Q ss_pred             EEeccCCcCccc
Q 038396          341 FFDVSDNYLTGA  352 (456)
Q Consensus       341 ~L~ls~N~l~~~  352 (456)
                      .|.+..|+++.+
T Consensus       330 ~l~~~~n~ln~e  341 (505)
T KOG3207|consen  330 HLRITLNYLNKE  341 (505)
T ss_pred             hhhccccccccc
Confidence            999999998754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=1.1e-12  Score=114.27  Aligned_cols=87  Identities=25%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             ccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccccc-CchhhhcCCCCCEEe
Q 038396          265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ-IPQQLVEFTFLEFFD  343 (456)
Q Consensus       265 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~  343 (456)
                      ++|+.||||+|.++. ...+=..+.+.+.|.|++|.+...  ..+..+-+|..||+++|+|... -...++++|.|+.+.
T Consensus       329 ~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            446677777777665 444556777888899999988633  4567777889999999988642 124578889999999


Q ss_pred             ccCCcCcccCC
Q 038396          344 VSDNYLTGAIP  354 (456)
Q Consensus       344 ls~N~l~~~~p  354 (456)
                      +.+|++.+.+.
T Consensus       406 L~~NPl~~~vd  416 (490)
T KOG1259|consen  406 LTGNPLAGSVD  416 (490)
T ss_pred             hcCCCccccch
Confidence            99999886543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=2.7e-12  Score=107.16  Aligned_cols=107  Identities=35%  Similarity=0.438  Sum_probs=26.8

Q ss_pred             cCCCCCeeecccCcCccccChhhh-hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccc-cCCCCC
Q 038396           64 NLNTVKNLVLSHNNLSGVLPQCLG-NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKL  141 (456)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L  141 (456)
                      +...+++|+|++|.|+ .+. .++ .+. +|+.|++++|.|+..  +.+..++.|++|++++|+++. +...+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~-~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLD-KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-T-T--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccc-ccc-chhhhhc-CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            3345566666666665 222 233 233 566666666666633  235556666666666666663 22223 245666


Q ss_pred             cEEeCcCCcCCcCC-CccccCCCCCCEEEccCCccc
Q 038396          142 EFLDLGNNQISDTF-PSWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus       142 ~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~  176 (456)
                      ++|++++|+|.... -..++.+++|+.|++.+|.+.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666664321 123445555666666665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=1e-11  Score=103.65  Aligned_cols=107  Identities=26%  Similarity=0.263  Sum_probs=25.3

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh-hCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG-NFSDE   92 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~   92 (456)
                      ..++++|+|++|+|+....+.    ..+.+|+.|++++|.|+.. . .+..++.|++|++++|.|+ .+...+. .++ +
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~----~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp-~   89 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLG----ATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP-N   89 (175)
T ss_dssp             ------------------S------TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T-T
T ss_pred             ccccccccccccccccccchh----hhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCC-c
Confidence            344566666666665222111    1244556666666666522 2 3555556666666666665 3333332 344 5


Q ss_pred             CcEEEccCCccceeCC-ccccCCCCccEEeccCCcCc
Q 038396           93 LSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQ  128 (456)
Q Consensus        93 L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~  128 (456)
                      |++|++++|+|..... ..+..+++|+.|++.+|+++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6666666665543211 22334455555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.24  E-value=9.6e-13  Score=117.09  Aligned_cols=87  Identities=22%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             cccccEEEccCCCCCcc----CchhhhccCCCCeEeCCCccccccCCcccc-----CCCCCCeeeCCCCccccc----Cc
Q 038396          264 PDILTGIILSSNRFDRV----IPTSIANLKGLQVLNLDNNNLQGHIPSCLG-----NLTNLESLDLSNNRFSGQ----IP  330 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~----~~  330 (456)
                      +++|+.|||.+|.++..    +...++.+++|++|++++|.+......+|.     ..|+|+.|.+.+|.|+..    +.
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            34466666666666532    334566777888888888877754433332     467888888888888642    22


Q ss_pred             hhhhcCCCCCEEeccCCcCc
Q 038396          331 QQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       331 ~~l~~l~~L~~L~ls~N~l~  350 (456)
                      ..+...+.|+.|+|++|.+.
T Consensus       292 ~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcchhhHHhcCCccccc
Confidence            33455778888888888883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=3.1e-12  Score=111.54  Aligned_cols=129  Identities=22%  Similarity=0.210  Sum_probs=75.2

Q ss_pred             CCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEe
Q 038396           66 NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  145 (456)
Q Consensus        66 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  145 (456)
                      ..|+++|||+|.|+ .+..++.-.+ .++.|++|+|.|..+.  .+..+++|+.||||+|.++ .+...-..+-+++.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            44666666666666 5555554444 6666666666666332  2556666666666666666 3333444555666666


Q ss_pred             CcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          146 LGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       146 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      |+.|.|...  +.++.+-+|..|++++|+|..... .-.++++|.|+.+.+.+|++.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcc
Confidence            666666522  345556666666666666654322 122356666666666666665

>PLN03150 hypothetical protein; Provisional

Probab=99.18  E-value=5.2e-11  Score=121.09  Aligned_cols=109  Identities=30%  Similarity=0.470  Sum_probs=92.3

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      .++.|+|++|.+++.+|..+..+. +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|++|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            367888888888888888888887 8999999999888888888888899999999999998888888888999999999


Q ss_pred             cCCcCCcCCCccccCC-CCCCEEEccCCccc
Q 038396          147 GNNQISDTFPSWLGTI-PNLNVLILRSNKFY  176 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~  176 (456)
                      ++|.+++.+|..++.. .++..+++.+|...
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccc
Confidence            9999988888877653 46778888888644

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.17  E-value=2.4e-11  Score=126.17  Aligned_cols=148  Identities=22%  Similarity=0.264  Sum_probs=108.9

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCC--CCCCCcEEEccCCc--cccccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPV--PPPETILYLVSNNS--LTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS   90 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~--~~~~L~~L~ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   90 (456)
                      ...+...+-+|.+.       .++.  ..+.|++|-+..|.  +.......|..++.|+.|||++|.--+.+|..++.+.
T Consensus       523 ~~~rr~s~~~~~~~-------~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-------HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             hheeEEEEeccchh-------hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            45777777777765       2222  25578888888886  5545556688899999999998876668999999998


Q ss_pred             CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC--cCCCccccCCCCCCEE
Q 038396           91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS--DTFPSWLGTIPNLNVL  168 (456)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L  168 (456)
                       +|++|+++++.+. .+|..+.++..|.+|++..+.-...+|.....+++|++|.+..-...  ...-..+..+.+|+.+
T Consensus       596 -~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l  673 (889)
T KOG4658|consen  596 -HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL  673 (889)
T ss_pred             -hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence             8999999999998 78888999999999999988766566777777899999888665422  2222334455555555


Q ss_pred             Ecc
Q 038396          169 ILR  171 (456)
Q Consensus       169 ~L~  171 (456)
                      ...
T Consensus       674 s~~  676 (889)
T KOG4658|consen  674 SIT  676 (889)
T ss_pred             eee
Confidence            543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.15  E-value=5e-12  Score=122.96  Aligned_cols=247  Identities=24%  Similarity=0.267  Sum_probs=135.6

Q ss_pred             cCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396           64 NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  143 (456)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  143 (456)
                      .+..++.+++..|.+. .+-..+..+. +|+.|++.+|.|..+ ...+..+++|++|++++|.|+...  .+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~-~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLK-SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhccccccc-ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence            4455566666666666 2223344555 677777777777633 222556677777777777776432  3555566777


Q ss_pred             EeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccC
Q 038396          144 LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ  223 (456)
Q Consensus       144 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~  223 (456)
                      |++++|.|+..  ..+..++.|+.+++++|++..+... . ...+.+++.+++.+|.+. .+..  +..+..+..+++..
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLD  217 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh-cccc--hHHHHHHHHhhccc
Confidence            77777777532  3445566777777777776655431 0 144566777777777665 2221  11222222222222


Q ss_pred             ccccccccCCCCCccccccccccceeEeeccCcccccccccc--cccEEEccCCCCCccCchhhhccCCCCeEeCCCccc
Q 038396          224 LRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPD--ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL  301 (456)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (456)
                      +.+.......                             ...  .|+.+++++|.+... +..+..+..+..|++..|++
T Consensus       218 n~i~~~~~l~-----------------------------~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  218 NKISKLEGLN-----------------------------ELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             ccceeccCcc-----------------------------cchhHHHHHHhcccCccccc-cccccccccccccchhhccc
Confidence            2221100000                             011  267777777777652 24566667777777777777


Q ss_pred             cccCCccccCCCCCCeeeCCCCccccc---Cchh-hhcCCCCCEEeccCCcCcccCC
Q 038396          302 QGHIPSCLGNLTNLESLDLSNNRFSGQ---IPQQ-LVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      ...  ..+...+.+..+..+.|++...   .... ....+.+..+.+.+|++....+
T Consensus       268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            633  2244555666666777766421   1111 3455677777777777765444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.3e-12  Score=116.90  Aligned_cols=209  Identities=22%  Similarity=0.232  Sum_probs=143.2

Q ss_pred             cCCCCCcEEeCcCCcCCcCCC--ccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396          136 VNCSKLEFLDLGNNQISDTFP--SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL  213 (456)
Q Consensus       136 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l  213 (456)
                      .++.+|+...|.++.+. ..+  .....+++++.|+|+.|-+....+..-....+++|+.|+++.|++.-......-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            45678999999999886 333  355689999999999998876544333346789999999999998743333334456


Q ss_pred             cccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCe
Q 038396          214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQV  293 (456)
Q Consensus       214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  293 (456)
                      ++++.|.+++|.+.-.                          ........+++|+.|+|..|...........-+..|+.
T Consensus       197 ~~lK~L~l~~CGls~k--------------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWK--------------------------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             hhhheEEeccCCCCHH--------------------------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            7777787777655110                          01112223677999999999643333444566788999


Q ss_pred             EeCCCccccccC-CccccCCCCCCeeeCCCCccccc-Cchh-----hhcCCCCCEEeccCCcCcccCCCC---CCCCCCC
Q 038396          294 LNLDNNNLQGHI-PSCLGNLTNLESLDLSNNRFSGQ-IPQQ-----LVEFTFLEFFDVSDNYLTGAIPLG---KQFATFD  363 (456)
Q Consensus       294 L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~-~~~~-----l~~l~~L~~L~ls~N~l~~~~p~~---~~~~~l~  363 (456)
                      |||++|++-... -...+.++.|+.|+++.+.+... .|+.     ...+++|++|+++.|++.. .+.-   ..+..+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLK  329 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhh
Confidence            999999987332 14567899999999999998742 3333     3567999999999999963 2222   2333445


Q ss_pred             CcccCCCCC
Q 038396          364 NTSFDGNSG  372 (456)
Q Consensus       364 ~~~~~~n~~  372 (456)
                      .+.+.+|+.
T Consensus       330 ~l~~~~n~l  338 (505)
T KOG3207|consen  330 HLRITLNYL  338 (505)
T ss_pred             hhhcccccc
Confidence            555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.11  E-value=7.6e-12  Score=121.68  Aligned_cols=245  Identities=23%  Similarity=0.210  Sum_probs=132.1

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +..+..+++..|.+.. +-..+..+++|+.|++.+|.|. .+...+..+. +|++|++++|.|+.+.  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhh-cchheecccccccccc--chhhccchhhh
Confidence            3444555555555552 2233555666666666666665 2222244454 5666666666666442  24445556666


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN  199 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n  199 (456)
                      ++++|.++..  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..+...    ..+..+..+++..|
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDN  218 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccc
Confidence            6666666522  234445666666666666653332 1 35556666666666665544211    22333444455555


Q ss_pred             cCcCCCChhhhhCcc--ccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCC
Q 038396          200 RFTGKLPSKSFLCLD--AMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRF  277 (456)
Q Consensus       200 ~l~~~~~~~~~~~l~--~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  277 (456)
                      .++ .+..  ...+.  .++.+.++++......                            .....+..+..|++..|.+
T Consensus       219 ~i~-~~~~--l~~~~~~~L~~l~l~~n~i~~~~----------------------------~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  219 KIS-KLEG--LNELVMLHLRELYLSGNRISRSP----------------------------EGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             cce-eccC--cccchhHHHHHHhcccCcccccc----------------------------ccccccccccccchhhccc
Confidence            554 2111  11111  2445555544431110                            0011134578888888888


Q ss_pred             CccCchhhhccCCCCeEeCCCcccccc---CCcc-ccCCCCCCeeeCCCCcccccCc
Q 038396          278 DRVIPTSIANLKGLQVLNLDNNNLQGH---IPSC-LGNLTNLESLDLSNNRFSGQIP  330 (456)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~-l~~l~~L~~L~Ls~N~l~~~~~  330 (456)
                      ...  ..+...+.+..+....|++...   .... ....+.++...+..|.+....+
T Consensus       268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            764  3355667788888888887621   1221 4567789999999998875444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=1.9e-11  Score=109.02  Aligned_cols=212  Identities=21%  Similarity=0.238  Sum_probs=149.8

Q ss_pred             CCCCCEEEccCCCCC---------------------CCCcCccCC----CC----------CCCCCcEEEccCCcccccc
Q 038396           14 MQYLNALNLSHNLLT---------------------SSNNLQGPL----PV----------PPPETILYLVSNNSLTGEI   58 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~---------------------~~~~l~~~~----~~----------~~~~L~~L~ls~n~l~~~~   58 (456)
                      +..+++++||+|.+.                     ..+-++|..    |.          .+++|+.++||+|.+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            788999999999987                     112223322    21          1568999999999987554


Q ss_pred             ch----hhhcCCCCCeeecccCcCccccCh-hhh------------hCCCCCcEEEccCCcccee----CCccccCCCCc
Q 038396           59 PS----WICNLNTVKNLVLSHNNLSGVLPQ-CLG------------NFSDELSVLDLQGNNFFGT----IPDTFIKESRL  117 (456)
Q Consensus        59 ~~----~~~~l~~L~~L~Ls~n~l~~~~~~-~~~------------~l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L  117 (456)
                      +.    .++.+..|++|.|.+|.+. .... .++            ..++.|+++...+|++...    +...|...+.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            43    4556889999999999875 2211 111            1224799999999998743    33457777899


Q ss_pred             cEEeccCCcCcc----cCCccccCCCCCcEEeCcCCcCCcC----CCccccCCCCCCEEEccCCcccccCCCCCC---cc
Q 038396          118 GVIDLSHNLFQG----RIPRSLVNCSKLEFLDLGNNQISDT----FPSWLGTIPNLNVLILRSNKFYGIIKEPRT---DC  186 (456)
Q Consensus       118 ~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~  186 (456)
                      +.+.++.|.|..    .....|..+++|+.|||.+|.++..    +...+..+++|+.|++++|.+..--...+.   ..
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~  267 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE  267 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence            999999998863    2334678899999999999998743    334566788999999999988643221110   13


Q ss_pred             CCCCccEEecccccCcCCC---ChhhhhCccccccccccCccc
Q 038396          187 RFSKLHIIDLSNNRFTGKL---PSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       187 ~l~~L~~L~ls~n~l~~~~---~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ..+.|+.|.+.+|.++..-   -..+....+.|..|+++.|++
T Consensus       268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4789999999999987321   122345578888999998876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=1.2e-10  Score=80.05  Aligned_cols=59  Identities=39%  Similarity=0.623  Sum_probs=29.9

Q ss_pred             CCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCc
Q 038396          290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY  348 (456)
Q Consensus       290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~  348 (456)
                      +|++|++++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444445555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=2.8e-10  Score=78.14  Aligned_cols=59  Identities=36%  Similarity=0.541  Sum_probs=32.0

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCc
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ  150 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~  150 (456)
                      +|++|++++|+++.+.+..|.++++|++|++++|+++...+.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555554444555555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=1.5e-09  Score=113.01  Aligned_cols=129  Identities=25%  Similarity=0.304  Sum_probs=100.1

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCc--CccccChh-hhhCCCCCcEEEccCCccceeCCccccCCCCc
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNN--LSGVLPQC-LGNFSDELSVLDLQGNNFFGTIPDTFIKESRL  117 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~-~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L  117 (456)
                      ....+...+.+|.+. .++.... .++|++|-+..|.  +. .++.. |..++ .|++|||++|.=.+.+|..++++-+|
T Consensus       522 ~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhh
Confidence            456788888888776 4444333 4578888888886  55 45554 44465 89999999887666889999999999


Q ss_pred             cEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCc
Q 038396          118 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK  174 (456)
Q Consensus       118 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  174 (456)
                      ++|++++..+. .+|..+..+++|.+|++..+.-...+|.....+++|++|.+..-.
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999998 788899999999999999887655667777778999999886654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=2.1e-10  Score=111.45  Aligned_cols=162  Identities=25%  Similarity=0.258  Sum_probs=102.6

Q ss_pred             ChhhhhhcCCCCCEEEccCCCCCCCCcC--------------------------ccCCCCC--CCCCcEEEccCCccccc
Q 038396            6 PKWLLDPSMQYLNALNLSHNLLTSSNNL--------------------------QGPLPVP--PPETILYLVSNNSLTGE   57 (456)
Q Consensus         6 p~~~~~~~l~~L~~L~Ls~N~l~~~~~l--------------------------~~~~~~~--~~~L~~L~ls~n~l~~~   57 (456)
                      |-.+..  ++.|++|.|.++.|.....+                          .|.+...  -..|...+.++|.+. .
T Consensus       102 pi~ifp--F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFP--FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             Cceecc--ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            445666  89999999999998711100                          1111111  235666677777777 5


Q ss_pred             cchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccC
Q 038396           58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN  137 (456)
Q Consensus        58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  137 (456)
                      ...++.-++.|+.|+|++|+++..  +.+..++ +|++|||++|.+..+.--...++ +|+.|.+++|.++..  ..+.+
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLP-KLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--HHHHhcc-cccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence            556677777788888888888743  2666776 78888888888773322223333 378888888877733  34677


Q ss_pred             CCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCccc
Q 038396          138 CSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus       138 l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~  176 (456)
                      +.+|+.||+++|-|.+.-- .-+..+..|+.|+|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7778888888887763211 12234556777777777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.75  E-value=1.4e-10  Score=112.72  Aligned_cols=107  Identities=25%  Similarity=0.334  Sum_probs=68.5

Q ss_pred             cccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCc-cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396          264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF  342 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  342 (456)
                      ++.++.|+|++|+++..  ..+..+++|++|||++|.+. .+|. ...++. |+.|.+++|.++..  ..+.++.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhcc
Confidence            34567777777777664  36777777777777777777 3333 223443 77777777777632  346677777777


Q ss_pred             eccCCcCcccCC--CCCCCCCCCCcccCCCCCCCCC
Q 038396          343 DVSDNYLTGAIP--LGKQFATFDNTSFDGNSGLCGR  376 (456)
Q Consensus       343 ~ls~N~l~~~~p--~~~~~~~l~~~~~~~n~~lc~~  376 (456)
                      |+++|-+++.-.  ..+.+..+..+.+.|||..|.+
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            777777765332  1244555666677777766643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.48  E-value=5.7e-09  Score=80.82  Aligned_cols=86  Identities=28%  Similarity=0.407  Sum_probs=57.3

Q ss_pred             ccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC
Q 038396          267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD  346 (456)
Q Consensus       267 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~  346 (456)
                      |+..+|++|.+...++..-..++.++.|+|++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-+|+..+
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence            566667777776654444455567777777777777 66666777777777777777776 5566666677777777777


Q ss_pred             CcCcccCCC
Q 038396          347 NYLTGAIPL  355 (456)
Q Consensus       347 N~l~~~~p~  355 (456)
                      |.+. .+|.
T Consensus       133 na~~-eid~  140 (177)
T KOG4579|consen  133 NARA-EIDV  140 (177)
T ss_pred             Cccc-cCcH
Confidence            7664 4443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.45  E-value=7.9e-09  Score=80.06  Aligned_cols=105  Identities=20%  Similarity=0.253  Sum_probs=54.7

Q ss_pred             CcEEEccCCccccccchhhh---cCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           44 TILYLVSNNSLTGEIPSWIC---NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        44 L~~L~ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +-.++|+.|++. .++++..   ....|+..+|++|.+. ..|..|....+.++.|++++|.|+ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            334455555554 2333322   2334444566666665 444444443334556666666665 445555556666666


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      +++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            66666655 45555555555555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=4e-08  Score=86.21  Aligned_cols=110  Identities=23%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCCeeecccCcCccccC-hhhhhCCCCCcEEEccCCcccee--CCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396           67 TVKNLVLSHNNLSGVLP-QCLGNFSDELSVLDLQGNNFFGT--IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  143 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~-~~~~~l~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  143 (456)
                      -++.|.+.++.|...-. ..|+.....++++||.+|.|+.-  +...+..+|.|++|+++.|++...+..--....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34445555555542211 12333333677777777777631  2333456777777788777776433221135567777


Q ss_pred             EeCcCCcCCcCCC-ccccCCCCCCEEEccCCccc
Q 038396          144 LDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus       144 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~  176 (456)
                      |-|.+..+.-... ..+..+|.++.|+++.|.+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            7777766653222 23456677777777777543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=6.8e-09  Score=90.91  Aligned_cols=87  Identities=24%  Similarity=0.196  Sum_probs=41.7

Q ss_pred             CccEEeccCCcCcc-cCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEE
Q 038396          116 RLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII  194 (456)
Q Consensus       116 ~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  194 (456)
                      .|++|||++..++. .+-..+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+.--........+..++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            35555555555442 11223444555555566665555555555555555666665554311110011112445566666


Q ss_pred             ecccccCc
Q 038396          195 DLSNNRFT  202 (456)
Q Consensus       195 ~ls~n~l~  202 (456)
                      +++.+.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            66666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=2.4e-08  Score=86.41  Aligned_cols=87  Identities=18%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             cccccEEEccCCCCCcc----CchhhhccCCCCeEeCCCccccccCCccc----c--CCCCCCeeeCCCCcccccCchh-
Q 038396          264 PDILTGIILSSNRFDRV----IPTSIANLKGLQVLNLDNNNLQGHIPSCL----G--NLTNLESLDLSNNRFSGQIPQQ-  332 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~--~l~~L~~L~Ls~N~l~~~~~~~-  332 (456)
                      +.+|+.|||..|.++-.    +...++.++.|+.|.+..|-++......+    .  ..++|..|-..+|.+.+.+... 
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~  292 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI  292 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence            34477777777776532    23345566777777777777664333222    1  3466777777777664422111 


Q ss_pred             ----h--hcCCCCCEEeccCCcCc
Q 038396          333 ----L--VEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       333 ----l--~~l~~L~~L~ls~N~l~  350 (456)
                          +  ..+|-|..|.+.+|.|.
T Consensus       293 ~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         293 SLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             chhhhhhcccHHHHHHHHccCcch
Confidence                1  23555666666677665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=4.9e-09  Score=91.81  Aligned_cols=181  Identities=23%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             CCCcEEeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCcccc
Q 038396          139 SKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAM  216 (456)
Q Consensus       139 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l  216 (456)
                      +.|++|||++..|+.. +...+..+.+|+.|.+.++++........  .+-.+|+.|+++.+. ++..--...+.++..|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhH
Confidence            3588888888777632 22344567788888888888765543333  566788888887653 4322222446677777


Q ss_pred             ccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC---ccCchhhhccCCCCe
Q 038396          217 KIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD---RVIPTSIANLKGLQV  293 (456)
Q Consensus       217 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~  293 (456)
                      ..|+++-+........                         .....+-+.|+.|++++..-.   ..+..-...+++|.+
T Consensus       263 ~~LNlsWc~l~~~~Vt-------------------------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVT-------------------------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             hhcCchHhhccchhhh-------------------------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence            7777766543221110                         111223455777777765321   112223356788888


Q ss_pred             EeCCCcc-ccccCCccccCCCCCCeeeCCCCcccccCchh---hhcCCCCCEEeccCCc
Q 038396          294 LNLDNNN-LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ---LVEFTFLEFFDVSDNY  348 (456)
Q Consensus       294 L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~L~ls~N~  348 (456)
                      |||+.|. ++......|..++.|++|.++.|..  .+|..   +...|+|.+||+.++-
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            8888874 3333334456778888888888864  34544   3566788888887653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.32  E-value=2.2e-06  Score=80.69  Aligned_cols=137  Identities=19%  Similarity=0.252  Sum_probs=92.2

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccC-cCccccChhhh
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN-NLSGVLPQCLG   87 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~   87 (456)
                      +..  +.++++|++++|.|+       .+|..+.+|+.|.++++.--..+|+.+.  ++|++|++++| .+. .+|.   
T Consensus        48 ~~~--~~~l~~L~Is~c~L~-------sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~---  112 (426)
T PRK15386         48 IEE--ARASGRLYIKDCDIE-------SLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE---  112 (426)
T ss_pred             HHH--hcCCCEEEeCCCCCc-------ccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc---
Confidence            455  789999999999887       5666667899999988544346676553  58999999998 554 4443   


Q ss_pred             hCCCCCcEEEccCCccceeCCccccCC-CCccEEeccCCcCc--ccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396           88 NFSDELSVLDLQGNNFFGTIPDTFIKE-SRLGVIDLSHNLFQ--GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN  164 (456)
Q Consensus        88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  164 (456)
                          .|+.|+++.+....     +..+ ++|+.|.+.+++..  ...|..+.  ++|++|++++|... ..|..+-  .+
T Consensus       113 ----sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~S  178 (426)
T PRK15386        113 ----SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ES  178 (426)
T ss_pred             ----ccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--cc
Confidence                68888888766542     1222 35777777543311  01121121  68999999998865 4454333  58


Q ss_pred             CCEEEccCCc
Q 038396          165 LNVLILRSNK  174 (456)
Q Consensus       165 L~~L~L~~n~  174 (456)
                      |+.|+++.+.
T Consensus       179 Lk~L~ls~n~  188 (426)
T PRK15386        179 LQSITLHIEQ  188 (426)
T ss_pred             CcEEEecccc
Confidence            9999988764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=3.2e-07  Score=80.61  Aligned_cols=87  Identities=23%  Similarity=0.260  Sum_probs=43.4

Q ss_pred             CCCccEEeccCCcCcc--cCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCc
Q 038396          114 ESRLGVIDLSHNLFQG--RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL  191 (456)
Q Consensus       114 l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  191 (456)
                      .+.++.+||.+|.|+.  .+...+.+++.|+.|+++.|.+...+...-....+|+.|.|.+..+.-.....+ ...+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh-hhcchhh
Confidence            3556666666666652  222334556666666666666653322111234456666665555432211111 1345555


Q ss_pred             cEEecccccC
Q 038396          192 HIIDLSNNRF  201 (456)
Q Consensus       192 ~~L~ls~n~l  201 (456)
                      ++|.+|.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            5666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=8.1e-07  Score=77.17  Aligned_cols=88  Identities=18%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             cccEEEccCCCCCccCc-----hhhhccCCCCeEeCCCcccccc----CCccccCCCCCCeeeCCCCcccccCchhh---
Q 038396          266 ILTGIILSSNRFDRVIP-----TSIANLKGLQVLNLDNNNLQGH----IPSCLGNLTNLESLDLSNNRFSGQIPQQL---  333 (456)
Q Consensus       266 ~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l---  333 (456)
                      .|+++.+..|.|...-.     ..+..+.+|+.|||+.|-++..    ....+...+.|++|.+..|-++..-...+   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            46777777777753311     1245578999999999998733    23345567789999999998875433322   


Q ss_pred             ---hcCCCCCEEeccCCcCcccC
Q 038396          334 ---VEFTFLEFFDVSDNYLTGAI  353 (456)
Q Consensus       334 ---~~l~~L~~L~ls~N~l~~~~  353 (456)
                         ...++|..|-..+|.+.+.+
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             hhhhcCCCccccccchhhhcCce
Confidence               13578889999999887643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.19  E-value=3.4e-06  Score=70.24  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=63.6

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL   96 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L   96 (456)
                      =+.+||.+.++....    .+-....+...+||++|.+.. + +.|..++.|.+|.|.+|.|+ .+...+..+.++|..|
T Consensus        21 e~e~~LR~lkip~ie----nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIE----NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTL   93 (233)
T ss_pred             ccccccccccccchh----hccccccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceE
Confidence            456666666654211    122224455666666666652 1 24556666666666666666 3333344444356666


Q ss_pred             EccCCccceeC-CccccCCCCccEEeccCCcCcccCC---ccccCCCCCcEEeCcC
Q 038396           97 DLQGNNFFGTI-PDTFIKESRLGVIDLSHNLFQGRIP---RSLVNCSKLEFLDLGN  148 (456)
Q Consensus        97 ~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~  148 (456)
                      .+.+|.|.... -+-+..+++|++|.+-+|+++..--   ..+..+++|+.||++.
T Consensus        94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            66666654210 0123445556666666665553211   1344455555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.15  E-value=3.5e-06  Score=70.10  Aligned_cols=129  Identities=22%  Similarity=0.212  Sum_probs=81.1

Q ss_pred             CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396           68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  147 (456)
Q Consensus        68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  147 (456)
                      =++++|.+.++. .+ ..++....+...+||++|++...  +.|..++.|.+|.+++|+|+.+-|.--.-+++|..|.|.
T Consensus        21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-ch-hhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            345666666654 22 12333334677788888887632  356777888888888888886555544455778888888


Q ss_pred             CCcCCcCC-CccccCCCCCCEEEccCCcccccCCC-CCCccCCCCccEEeccccc
Q 038396          148 NNQISDTF-PSWLGTIPNLNVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNR  200 (456)
Q Consensus       148 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~ls~n~  200 (456)
                      +|.|.... -.-+..+|+|++|.+-+|..+....- .+....+|+|+.||.+.-.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88775221 12345677888888888876543211 1223567888888876543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=1.9e-06  Score=54.06  Aligned_cols=36  Identities=42%  Similarity=0.691  Sum_probs=16.8

Q ss_pred             CCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396          314 NLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       314 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~  350 (456)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 33334455555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.08  E-value=1.8e-05  Score=74.62  Aligned_cols=75  Identities=17%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             hhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCC-cCCcCCCccccCCCCC
Q 038396           87 GNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN-QISDTFPSWLGTIPNL  165 (456)
Q Consensus        87 ~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L  165 (456)
                      ..+. +++.|++++|.++ .+|. +  ..+|++|.++++.--..+|..+.  ++|++|++++| .+. .+|      .+|
T Consensus        49 ~~~~-~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         49 EEAR-ASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHhc-CCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence            3454 7888888888776 4452 2  23577777776433235555442  46777777776 443 233      235


Q ss_pred             CEEEccCCcc
Q 038396          166 NVLILRSNKF  175 (456)
Q Consensus       166 ~~L~L~~n~l  175 (456)
                      +.|+++.+..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            5566555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=5e-06  Score=52.15  Aligned_cols=15  Identities=40%  Similarity=0.514  Sum_probs=5.4

Q ss_pred             hcCCCCCeeecccCc
Q 038396           63 CNLNTVKNLVLSHNN   77 (456)
Q Consensus        63 ~~l~~L~~L~Ls~n~   77 (456)
                      .+|++|++|++++|+
T Consensus        21 ~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen   21 SNLPNLETLNLSNNP   35 (44)
T ss_dssp             TTCTTSSEEEETSSC
T ss_pred             hCCCCCCEEEecCCC
Confidence            333333333333333

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.74  E-value=0.00014  Score=58.19  Aligned_cols=116  Identities=17%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR  171 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  171 (456)
                      +|+.+.+.. .+..+...+|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|+.+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            455555543 344344445555555555555543 4434444555555555555543 2222333444555555555554


Q ss_pred             CCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCcccc
Q 038396          172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAM  216 (456)
Q Consensus       172 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l  216 (456)
                      .+ +..+....+  ... +|+.+.+.. .+. .++...|.++.+|
T Consensus        90 ~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   90 SN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             cc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            43 333333333  333 555555543 233 4444555544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.68  E-value=0.00021  Score=57.26  Aligned_cols=86  Identities=19%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             cchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccC
Q 038396           58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN  137 (456)
Q Consensus        58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  137 (456)
                      ...+|.++++|+.+.+.++ +...-..+|..+. .|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.+
T Consensus        27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             Chhhccccccccccccccc-ccccceeeeeccc-ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence            3344444444555555443 3322223333333 355555543 333233344444455555555443 33233334444


Q ss_pred             CCCCcEEeCcC
Q 038396          138 CSKLEFLDLGN  148 (456)
Q Consensus       138 l~~L~~L~Ls~  148 (456)
                      + +|+.+.+..
T Consensus       103 ~-~l~~i~~~~  112 (129)
T PF13306_consen  103 C-NLKEINIPS  112 (129)
T ss_dssp             --T--EEE-TT
T ss_pred             C-CceEEEECC
Confidence            4 455544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=1.5e-05  Score=81.52  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             CCCCeeecccCcCcc-ccChhhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396           66 NTVKNLVLSHNNLSG-VLPQCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  143 (456)
Q Consensus        66 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  143 (456)
                      .+|++|++++...-. .=|..++.+.|.|+.|.+++=.+... ......++++|..||+|+.+++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            578888888765421 22234555555888888887665421 234456778888888888888744  66788888888


Q ss_pred             EeCcCCcCCc-CCCccccCCCCCCEEEccCCcccccCCCC----CCccCCCCccEEecccccCcCCC
Q 038396          144 LDLGNNQISD-TFPSWLGTIPNLNVLILRSNKFYGIIKEP----RTDCRFSKLHIIDLSNNRFTGKL  205 (456)
Q Consensus       144 L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~~L~~L~ls~n~l~~~~  205 (456)
                      |.+.+=.+.. ..-..+..+++|+.||+|..+........    -....+|+|+.||.|++.+.+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            8887766652 11134567888888888877654332000    01134788899998887776433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=2.6e-05  Score=79.78  Aligned_cols=135  Identities=19%  Similarity=0.268  Sum_probs=74.1

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc-ccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG-EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      .+|++||+++...- .+.+...+-.-+|.|++|.+++-.+.. ..-....++++|..||+|+.+++..  .++..+. +|
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk-nL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLK-NL  197 (699)
T ss_pred             HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccc-cH
Confidence            46777777775542 111111222226777777777655532 2223445677777777777777633  5666666 67


Q ss_pred             cEEEccCCcccee-CCccccCCCCccEEeccCCcCcccC------CccccCCCCCcEEeCcCCcCCc
Q 038396           94 SVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRI------PRSLVNCSKLEFLDLGNNQISD  153 (456)
Q Consensus        94 ~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~l~~L~~L~Ls~n~i~~  153 (456)
                      ++|.+.+=.+... .-..+..+++|+.||+|..+.....      -+.-..+|+|+.||.|++.+..
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7777666555421 1123445677777777766544211      0112235666777776666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=0.0002  Score=62.48  Aligned_cols=59  Identities=25%  Similarity=0.354  Sum_probs=26.3

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCC--cCcccCCccccCCCCCcEEeCcCCcCC
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN--LFQGRIPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      .|+.|++.+..++..  ..|..+++|++|.++.|  ++.+.++--...+++|++|+++.|+|.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            444555544444422  22444455555555555  333333322333345555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.19  E-value=0.00019  Score=62.54  Aligned_cols=105  Identities=26%  Similarity=0.206  Sum_probs=70.7

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccC--cCccccChhhhhCCCCCcEEEccCCccceeC-CccccCCCCc
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN--NLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-PDTFIKESRL  117 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L  117 (456)
                      +..|+.+.+.+..++..  ..|-.+++|++|.++.|  .+.+.++.-...++ +|++|++++|+|...- -.....+.+|
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCccccccccchhhhhcch
Confidence            56677777777766632  24666888999999999  66655555555565 8999999999887310 1224556778


Q ss_pred             cEEeccCCcCcccCC---ccccCCCCCcEEeCcC
Q 038396          118 GVIDLSHNLFQGRIP---RSLVNCSKLEFLDLGN  148 (456)
Q Consensus       118 ~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~  148 (456)
                      ..|++.+|..+....   ..|.-+++|++||-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            899999987774221   2455677888876543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=1.5e-05  Score=69.72  Aligned_cols=56  Identities=27%  Similarity=0.272  Sum_probs=25.3

Q ss_pred             CcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396           93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus        93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      .+.|++.+|.+.++  ....+++.|+.|.|+-|+|+..-  .+..|++|++|+|..|.|.
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence            44455555554432  12234445555555555554221  2444445555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=3.9e-05  Score=67.19  Aligned_cols=100  Identities=26%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccC-CccccCCCCCcE
Q 038396           65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI-PRSLVNCSKLEF  143 (456)
Q Consensus        65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~  143 (456)
                      +.+.+.|++.++.++++  .-..+++ .|++|.||-|+|+..-|  |..+++|++|+|..|.|.... -..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp-~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMP-LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcc-cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45566777777777643  2233455 77888888888775433  667778888888888776321 124567777888


Q ss_pred             EeCcCCcCCcCCCc-----cccCCCCCCEEE
Q 038396          144 LDLGNNQISDTFPS-----WLGTIPNLNVLI  169 (456)
Q Consensus       144 L~Ls~n~i~~~~~~-----~~~~l~~L~~L~  169 (456)
                      |.|..|.-.+..+.     .+.-+|+|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88877776654442     233466666664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.93  E-value=0.00024  Score=65.88  Aligned_cols=84  Identities=23%  Similarity=0.167  Sum_probs=38.7

Q ss_pred             ccccEEEccCCCCCcc--CchhhhccCCCCeEeCCCcccc-ccC----CccccCCCCCCeeeCCCCccc-ccCchhhhcC
Q 038396          265 DILTGIILSSNRFDRV--IPTSIANLKGLQVLNLDNNNLQ-GHI----PSCLGNLTNLESLDLSNNRFS-GQIPQQLVEF  336 (456)
Q Consensus       265 ~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l  336 (456)
                      ..|+.+++..+.....  +...-.+++.|++|.|+++.+. +..    ...-..+..|+.+.|+++... ...-+.+..+
T Consensus       346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            3455555555443211  1111234556666666666432 111    111123455666666666432 2233444555


Q ss_pred             CCCCEEeccCCc
Q 038396          337 TFLEFFDVSDNY  348 (456)
Q Consensus       337 ~~L~~L~ls~N~  348 (456)
                      ++|+.+++-+++
T Consensus       426 ~~Leri~l~~~q  437 (483)
T KOG4341|consen  426 RNLERIELIDCQ  437 (483)
T ss_pred             cccceeeeechh
Confidence            666665555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.85  E-value=0.00039  Score=64.54  Aligned_cols=63  Identities=29%  Similarity=0.226  Sum_probs=43.8

Q ss_pred             ccccccEEEccCCCCCccC-----chhhhccCCCCeEeCCCcccc-ccCCccccCCCCCCeeeCCCCcc
Q 038396          263 IPDILTGIILSSNRFDRVI-----PTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRF  325 (456)
Q Consensus       263 ~~~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l  325 (456)
                      .++.|+.+.++++......     ...-..+..|..+.|+++... +..-+.+..+++|+.+++-.++-
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            3566888888877654322     122345678999999998754 44445677888999999988854

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.67  E-value=0.0061  Score=31.65  Aligned_cols=12  Identities=58%  Similarity=0.833  Sum_probs=5.1

Q ss_pred             CcEEEccCCccc
Q 038396           93 LSVLDLQGNNFF  104 (456)
Q Consensus        93 L~~L~Ls~n~i~  104 (456)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.62  E-value=0.0043  Score=32.24  Aligned_cols=11  Identities=55%  Similarity=0.745  Sum_probs=4.2

Q ss_pred             CeeeCCCCccc
Q 038396          316 ESLDLSNNRFS  326 (456)
Q Consensus       316 ~~L~Ls~N~l~  326 (456)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.24  E-value=0.005  Score=61.49  Aligned_cols=14  Identities=29%  Similarity=0.278  Sum_probs=7.2

Q ss_pred             CCCCCCEEEccCCc
Q 038396          161 TIPNLNVLILRSNK  174 (456)
Q Consensus       161 ~l~~L~~L~L~~n~  174 (456)
                      .+++++.+.+..+.
T Consensus       360 ~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  360 SCPKLTDLSLSYCG  373 (482)
T ss_pred             cCCCcchhhhhhhh
Confidence            45555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.90  E-value=0.00024  Score=69.73  Aligned_cols=185  Identities=23%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             CCEEEccCCCCCCCCc-CccCCCCCCCCCcEEEccCCccccccchh----hhcC-CCCCeeecccCcCccc----cChhh
Q 038396           17 LNALNLSHNLLTSSNN-LQGPLPVPPPETILYLVSNNSLTGEIPSW----ICNL-NTVKNLVLSHNNLSGV----LPQCL   86 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~-l~~~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~----~~~~~   86 (456)
                      +..|+|.+|.+.+... ..+..-...+.|..|+++.|.+.+..-..    +... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677888887762100 00000112566777888888877432222    2222 4566777777777643    33445


Q ss_pred             hhCCCCCcEEEccCCccce----eCCccc----cCCCCccEEeccCCcCccc----CCccccCCCC-CcEEeCcCCcCCc
Q 038396           87 GNFSDELSVLDLQGNNFFG----TIPDTF----IKESRLGVIDLSHNLFQGR----IPRSLVNCSK-LEFLDLGNNQISD  153 (456)
Q Consensus        87 ~~l~~~L~~L~Ls~n~i~~----~~~~~~----~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~-L~~L~Ls~n~i~~  153 (456)
                      .... .++.++++.|.+..    .++..+    ....++++|.+++|.++..    ....+...+. +..|++..|.+.+
T Consensus       169 ~~~~-~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EKNE-HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hccc-chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            5533 78888888887631    122222    3466788888888877631    1223444445 6668888888764


Q ss_pred             CC----CccccCC-CCCCEEEccCCcccccCCCCC--CccCCCCccEEecccccCc
Q 038396          154 TF----PSWLGTI-PNLNVLILRSNKFYGIIKEPR--TDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       154 ~~----~~~~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~  202 (456)
                      ..    ...+..+ ..+++++++.|.+........  ....++.++++.+++|.+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            31    1233344 567888888888765422211  1134567888888888876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.76  E-value=0.0029  Score=63.20  Aligned_cols=109  Identities=28%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             CCcEEEccCCcccee--CCccccCCCCccEEeccCC-cCcccC----CccccCCCCCcEEeCcCCc-CCcCCCcccc-CC
Q 038396           92 ELSVLDLQGNNFFGT--IPDTFIKESRLGVIDLSHN-LFQGRI----PRSLVNCSKLEFLDLGNNQ-ISDTFPSWLG-TI  162 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~-~l  162 (456)
                      .|+.|.+..+.-...  .-......+.|+.|+++++ ......    ......+++|+.|+++++. +++..-..++ .+
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            566666655532211  1123344566666666652 111011    1123345666777777666 4433333333 25


Q ss_pred             CCCCEEEccCCc-ccccCCCCCCccCCCCccEEecccccC
Q 038396          163 PNLNVLILRSNK-FYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       163 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      ++|++|.+.++. ++...- ......++.|++|+++++..
T Consensus       269 ~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCcc
Confidence            667777655554 222110 01123456677777776544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.71  E-value=0.00012  Score=71.77  Aligned_cols=84  Identities=25%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             CcEEEccCCccccccc----hhhhcCCCCCeeecccCcCccccChhhh----hCCCCCcEEEccCCcccee----CCccc
Q 038396           44 TILYLVSNNSLTGEIP----SWICNLNTVKNLVLSHNNLSGVLPQCLG----NFSDELSVLDLQGNNFFGT----IPDTF  111 (456)
Q Consensus        44 L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~~L~~L~Ls~n~i~~~----~~~~~  111 (456)
                      +..+.|.+|.+.....    .++...+.|+.|++++|.+.+.--..+.    ...+.+++|++..|.++..    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5566666666654322    2344456666666666666532111111    1112345555555555432    22233


Q ss_pred             cCCCCccEEeccCCcC
Q 038396          112 IKESRLGVIDLSHNLF  127 (456)
Q Consensus       112 ~~l~~L~~L~Ls~N~l  127 (456)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            3345555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.77  E-value=0.0023  Score=54.95  Aligned_cols=84  Identities=19%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             cccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEe
Q 038396          264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD  343 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  343 (456)
                      ....+.||++.|.+.. .-..|+-++.|..|+++.|++. ..|..+.....+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3456777777777655 3345666677777777777777 66777777777777777777776 6777777778888887


Q ss_pred             ccCCcCc
Q 038396          344 VSDNYLT  350 (456)
Q Consensus       344 ls~N~l~  350 (456)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            7777754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.68  E-value=0.041  Score=26.41  Aligned_cols=11  Identities=45%  Similarity=0.703  Sum_probs=3.3

Q ss_pred             CcEEEccCCcc
Q 038396           93 LSVLDLQGNNF  103 (456)
Q Consensus        93 L~~L~Ls~n~i  103 (456)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.60  E-value=0.0022  Score=55.07  Aligned_cols=85  Identities=20%  Similarity=0.175  Sum_probs=41.7

Q ss_pred             hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396           62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  141 (456)
Q Consensus        62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  141 (456)
                      +......+.||++.|++. .+-..|..+. .|..||++.|++. ..|..+..+..+..+++..|..+ ..|.++...+.+
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            333445555555555554 3333344444 4555555555554 44444544444555555555444 444455555555


Q ss_pred             cEEeCcCCc
Q 038396          142 EFLDLGNNQ  150 (456)
Q Consensus       142 ~~L~Ls~n~  150 (456)
                      +++++-.|.
T Consensus       114 k~~e~k~~~  122 (326)
T KOG0473|consen  114 KKNEQKKTE  122 (326)
T ss_pred             chhhhccCc
Confidence            555554444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.04  E-value=0.14  Score=27.66  Aligned_cols=13  Identities=46%  Similarity=0.644  Sum_probs=6.2

Q ss_pred             CCCeeecccCcCc
Q 038396           67 TVKNLVLSHNNLS   79 (456)
Q Consensus        67 ~L~~L~Ls~n~l~   79 (456)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.04  E-value=0.14  Score=27.66  Aligned_cols=13  Identities=46%  Similarity=0.644  Sum_probs=6.2

Q ss_pred             CCCeeecccCcCc
Q 038396           67 TVKNLVLSHNNLS   79 (456)
Q Consensus        67 ~L~~L~Ls~n~l~   79 (456)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.52  E-value=0.17  Score=27.32  Aligned_cols=14  Identities=64%  Similarity=0.873  Sum_probs=7.2

Q ss_pred             CCCCeeeCCCCccc
Q 038396          313 TNLESLDLSNNRFS  326 (456)
Q Consensus       313 ~~L~~L~Ls~N~l~  326 (456)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.52  E-value=0.17  Score=27.32  Aligned_cols=14  Identities=64%  Similarity=0.873  Sum_probs=7.2

Q ss_pred             CCCCeeeCCCCccc
Q 038396          313 TNLESLDLSNNRFS  326 (456)
Q Consensus       313 ~~L~~L~Ls~N~l~  326 (456)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=0.052  Score=45.87  Aligned_cols=83  Identities=19%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             cccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc-CCcccc-CCCCCCeeeCCCC-cccccCchhhhcCCCCCEE
Q 038396          266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH-IPSCLG-NLTNLESLDLSNN-RFSGQIPQQLVEFTFLEFF  342 (456)
Q Consensus       266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L  342 (456)
                      .++.+|-++..|..+--+.+.+++.++.|.+.+++--+. --+.++ -.++|+.|+|++| +|+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            388899999988877777788888889998888853211 001111 3478999999988 7876666677888888888


Q ss_pred             eccCCc
Q 038396          343 DVSDNY  348 (456)
Q Consensus       343 ~ls~N~  348 (456)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            876543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.71  E-value=0.094  Score=27.71  Aligned_cols=13  Identities=31%  Similarity=0.547  Sum_probs=4.8

Q ss_pred             CCCeeecccCcCc
Q 038396           67 TVKNLVLSHNNLS   79 (456)
Q Consensus        67 ~L~~L~Ls~n~l~   79 (456)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=88.07  E-value=0.7  Score=27.23  Aligned_cols=11  Identities=18%  Similarity=0.332  Sum_probs=4.2

Q ss_pred             hhhhhhhHHHH
Q 038396          414 GYAGGLVTGLV  424 (456)
Q Consensus       414 ~~~~~~~~~~~  424 (456)
                      ++.+++++|++
T Consensus         7 aIIv~V~vg~~   17 (38)
T PF02439_consen    7 AIIVAVVVGMA   17 (38)
T ss_pred             hHHHHHHHHHH
Confidence            33344333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.81  E-value=0.52  Score=25.48  Aligned_cols=16  Identities=31%  Similarity=0.513  Sum_probs=11.9

Q ss_pred             CCCCCEEEccCCCCCC
Q 038396           14 MQYLNALNLSHNLLTS   29 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~   29 (456)
                      +.+|+.|+|++|+|+.
T Consensus         1 L~~L~~L~L~~NkI~~   16 (26)
T smart00365        1 LTNLEELDLSQNKIKK   16 (26)
T ss_pred             CCccCEEECCCCccce
Confidence            3578888888888863

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=86.79  E-value=4  Score=39.46  Aligned_cols=138  Identities=15%  Similarity=-0.006  Sum_probs=71.5

Q ss_pred             CCCeeecccCcCccccChhhhhCC--CCCcEEEccCCcccee---CCccccCCCCccEEeccCCcCcc----cCC----c
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFS--DELSVLDLQGNNFFGT---IPDTFIKESRLGVIDLSHNLFQG----RIP----R  133 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~--~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~----~~~----~  133 (456)
                      .+++++++.|...+.+|..+..+.  ..++.++.+...+...   .+-.++.-++++..+++.|..+.    ..+    .
T Consensus       215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~  294 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD  294 (553)
T ss_pred             cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence            577888888888777776443221  2466777776665421   22334445677777777775542    111    2


Q ss_pred             cccCCCCCcEEeCcCCcCCcCCCccc--c----CCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396          134 SLVNCSKLEFLDLGNNQISDTFPSWL--G----TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       134 ~l~~l~~L~~L~Ls~n~i~~~~~~~~--~----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  206 (456)
                      .|..-.++ +|++..+.....-+..+  +    .-+.=-+++++.|...+.....-. ..-..+++|+...|.+.|+..
T Consensus       295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac-i~g~R~q~l~~rdnnldgeg~  371 (553)
T KOG4242|consen  295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC-IFGQRVQVLLQRDNNLDGEGG  371 (553)
T ss_pred             ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc-ccceeeeEeeccccccccccc
Confidence            33444556 66666655443222111  0    001112345555444332111110 112358889999998876654

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=85.77  E-value=0.83  Score=26.94  Aligned_cols=30  Identities=10%  Similarity=0.188  Sum_probs=19.0

Q ss_pred             hhhhhHHHHHHHHHhhhhhhHhHhhhhhHH
Q 038396          416 AGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ  445 (456)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (456)
                      .++.+++++++++++.+...+|..+.+|.+
T Consensus         5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            456667777777776666666666555544

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.98  E-value=0.18  Score=42.75  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             CCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCccccc
Q 038396          139 SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAMK  217 (456)
Q Consensus       139 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~  217 (456)
                      ..++.+|-++..|..+--+.+..++.++.|.+.++.--+.........-.++|+.|++++|. |+ +-....+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence            34566666666665444444555556666665555422110000011234677777777664 33 44444555666666


Q ss_pred             cccccCccc
Q 038396          218 IVNTSQLRY  226 (456)
Q Consensus       218 ~l~l~~~~~  226 (456)
                      .+.+...+.
T Consensus       180 ~L~l~~l~~  188 (221)
T KOG3864|consen  180 RLHLYDLPY  188 (221)
T ss_pred             HHHhcCchh
Confidence            666655444

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=84.59  E-value=1.4  Score=37.47  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=16.6

Q ss_pred             cceeeeehhhhhhhHHHHHHHHHhhhh
Q 038396          407 DWKIILIGYAGGLVTGLVLGFNFSSII  433 (456)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (456)
                      .+..|++|+++|++++++|.+++.++|
T Consensus        35 d~~~I~iaiVAG~~tVILVI~i~v~vR   61 (221)
T PF08374_consen   35 DYVKIMIAIVAGIMTVILVIFIVVLVR   61 (221)
T ss_pred             cceeeeeeeecchhhhHHHHHHHHHHH
Confidence            456677777777766555555554443

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.16  E-value=1.2  Score=34.75  Aligned_cols=13  Identities=31%  Similarity=0.554  Sum_probs=5.6

Q ss_pred             ehhhhhhhHHHHH
Q 038396          413 IGYAGGLVTGLVL  425 (456)
Q Consensus       413 ~~~~~~~~~~~~~  425 (456)
                      +++++|+++|++.
T Consensus        67 ~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   67 IGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eehhHHHHHHHHH
Confidence            3444444444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=80.74  E-value=5.3  Score=38.67  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=39.4

Q ss_pred             ccEEEccCCCCCccCch--hhhccCCCCeEeCCCccccc-cCCcccc--------CCCCCCeeeCCCCcccccCch---h
Q 038396          267 LTGIILSSNRFDRVIPT--SIANLKGLQVLNLDNNNLQG-HIPSCLG--------NLTNLESLDLSNNRFSGQIPQ---Q  332 (456)
Q Consensus       267 L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~-~~~~~l~--------~l~~L~~L~Ls~N~l~~~~~~---~  332 (456)
                      +++|....|.+.+..-.  ....-+..+.+++.+-.-.. ..+....        .-.-+..+.++.|.+......   .
T Consensus       356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~  435 (553)
T KOG4242|consen  356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK  435 (553)
T ss_pred             eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence            67777777776654332  22333455556555433210 0000000        112355666666666532221   2


Q ss_pred             hhcCCCCCEEeccCCcCc
Q 038396          333 LVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       333 l~~l~~L~~L~ls~N~l~  350 (456)
                      +..-+.+..|++++|...
T Consensus       436 l~stqtl~kldisgn~mg  453 (553)
T KOG4242|consen  436 LLSTQTLAKLDISGNGMG  453 (553)
T ss_pred             hccCcccccccccCCCcc
Confidence            233456667777776543

>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.72  E-value=2  Score=35.30  Aligned_cols=47  Identities=11%  Similarity=0.068  Sum_probs=34.6

Q ss_pred             cceeeeehhhhhhhHHHHHHHHHhhhhhhHhHhhhhhHHHhhhcccc
Q 038396          407 DWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGI  453 (456)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (456)
                      .|..+..++.+|.++..+++.+++|...+|....++.|+++++.+++
T Consensus       134 lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~~~~~~~  180 (184)
T COG3216         134 LWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRRSLAERA  180 (184)
T ss_pred             hcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46777788888887777777777787778888887777666655543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.15  E-value=1.2  Score=24.02  Aligned_cols=13  Identities=38%  Similarity=0.746  Sum_probs=6.8

Q ss_pred             CCCeeeCCCCccc
Q 038396          314 NLESLDLSNNRFS  326 (456)
Q Consensus       314 ~L~~L~Ls~N~l~  326 (456)
                      +|+.|++++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            4455555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-33
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-25
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-10

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 163/360 (45%), Gaps = 23/360 (6%)
Query: 46  LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFG 105
           LYL  NN  TG+IP  + N + + +L LS N LSG +P  LG+ S +L  L L  N   G
Sbjct: 399 LYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEG 456
Query: 106 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
            IP   +    L  + L  N   G IP  L NC+ L ++ L NN+++   P W+G + NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225
            +L L +N F G I     DCR   L  +DL+ N F G +P+  F     +     +  R
Sbjct: 517 AILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 226 YL-------------QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-----L 267
           Y+                +  +  + ++ ++        N   R+   +  P       +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 268 TGIILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSG 327
             + +S N     IP  I ++              G IP  +G+L  L  LDLS+N+  G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 328 QIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEA 387
           +IPQ +   T L   D+S+N L+G IP   QF TF    F  N GLCG PL + C+   A
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNA 753

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 160/412 (38%), Gaps = 87/412 (21%)
Query: 46  LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFG 105
           LYL  NN  TG+IP  + N + + +L LS N LSG +P  LG+ S +L  L L  N   G
Sbjct: 396 LYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEG 453
Query: 106 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
            IP   +    L  + L  N   G IP  L NC+ L ++ L NN+++   P W+G + NL
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225
            +L L +N F G I     DCR   L  +DL+ N F G +P+  F               
Sbjct: 514 AILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNLFNGTIPAAMF--------------- 556
Query: 226 YLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI 285
                    G+++ + I+   Y  I N  G     +   ++L    + S + +R+   + 
Sbjct: 557 ------KQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 286 ANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQ----------------- 328
            N+              GH      N  ++  LD+S N  SG                  
Sbjct: 610 CNIT--------SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 329 -------------------------------IPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
                                          IPQ +   T L   D+S+N L+G IP   
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 358 QFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESL----FSGA 405
           QF TF    F  N GLCG PL + C+   A     H       L    F GA
Sbjct: 722 QFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENLYFQGA 772

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
           S N+L+G +P  I +L  +  +    N +SG +P   G+FS   + + +  N   G IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
           TF     L  +DLS N+ +G       +    + + L  N ++      +G   NLN L 
Sbjct: 193 TF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206
           LR+N+ YG + +  T  +F  LH +++S N   G++P
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 128/325 (39%), Gaps = 65/325 (20%)
Query: 62  ICNLNT----VKNLVLSHNNLSGV--LPQCLGNFSDELSVLDLQG-NNFFGTIPDTFIKE 114
           +C+ +T    V NL LS  NL     +P  L N    L+ L + G NN  G IP    K 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKL 100
Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
           ++L  + ++H    G IP  L     L  LD   N +S T P  + ++PNL  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 175 FYGIIKEPRTDCRFSKLHI-IDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP 233
             G I  P +   FSKL   + +S NR TGK+P  +F  L+ +  V+ S+     D    
Sbjct: 161 ISGAI--PDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 234 YGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGXXX 293
           +G       +T    L  NS    +    +   L G+ L +NR                 
Sbjct: 217 FGSDK----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI---------------- 256
Query: 294 XXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI 353
                    G +P  L  L  L SL++S N   G+IPQ                      
Sbjct: 257 --------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---------------------- 286
Query: 354 PLGKQFATFDNTSFDGNSGLCGRPL 378
             G     FD +++  N  LCG PL
Sbjct: 287 --GGNLQRFDVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-116
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  356 bits (917), Expect = e-116
 Identities = 129/442 (29%), Positives = 189/442 (42%), Gaps = 47/442 (10%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLT-------------------SSNNLQGPLPV-- 39
             G++P   L   M+ L  L+LS N  +                   SSNN  GP+    
Sbjct: 330 FSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 40  --PPPETILYL-VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL 96
              P  T+  L + NN  TG+IP  + N + + +L LS N LSG +P  LG+ S +L  L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDL 447

Query: 97  DLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP 156
            L  N   G IP   +    L  + L  N   G IP  L NC+ L ++ L NN+++   P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 157 SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAM 216
            W+G + NL +L L +N F G I  P        L  +DL+ N F G +P+  F     +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565

Query: 217 KIVNTS--------------QLRYLQDVISPYGQVSTDLISTYDYSLIMNS----KGRMM 258
                +              +     +++   G  S  L      +    +     G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

Query: 259 TYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 318
                   +  + +S N     IP  I ++  L +LNL +N++ G IP  +G+L  L  L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 319 DLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPL 378
           DLS+N+  G+IPQ +   T L   D+S+N L+G IP   QF TF    F  N GLCG PL
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

Query: 379 SKGCESDEARANEDHTEGSEES 400
            + C+   A     H       
Sbjct: 746 PR-CDPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  229 bits (585), Expect = 1e-67
 Identities = 103/357 (28%), Positives = 153/357 (42%), Gaps = 39/357 (10%)

Query: 1   IHGKIPKWLLDP-SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEI 58
           I G      +       L  L +S       N + G + V     + +L VS+N+ +  I
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAIS------GNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216

Query: 59  PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG 118
           P  + + + +++L +S N LSG   + +   + EL +L++  N F G IP   +    L 
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPLPL--KSLQ 272

Query: 119 VIDLSHNLFQGRIPRSLV-NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYG 177
            + L+ N F G IP  L   C  L  LDL  N      P + G+   L  L L SN F G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 178 IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQV 237
            +    T  +   L ++DLS N F+G+LP              ++ L  L          
Sbjct: 333 EL-PMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--------SASLLTL---------- 373

Query: 238 STDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297
             DL S      I+ +  +          L  + L +N F   IP +++N   L  L+L 
Sbjct: 374 --DLSSNNFSGPILPNLCQNPKNT-----LQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
            N L G IPS LG+L+ L  L L  N   G+IPQ+L+    LE   +  N LTG IP
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (483), Expect = 3e-53
 Identities = 89/362 (24%), Positives = 144/362 (39%), Gaps = 78/362 (21%)

Query: 3   GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLP---VPPPETILYLVSNNSLTGEIP 59
             +   LL  S+  L +L LS      ++++ G +         T L L S NSL+G + 
Sbjct: 67  SAVSSSLL--SLTGLESLFLS------NSHINGSVSGFKCSASLTSLDL-SRNSLSGPVT 117

Query: 60  S--WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKE--- 114
           +   + + + +K L +S N L        G   + L VLDL  N+  G     ++     
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
             L  + +S N   G +   +  C  LEFLD+ +N  S   P  LG    L  L +  NK
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234

Query: 175 FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPY 234
             G     R     ++L ++++S+N+F G +P                 L+YL       
Sbjct: 235 LSGDF--SRAISTCTELKLLNISSNQFVGPIPPLPL-----------KSLQYLS------ 275

Query: 235 GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA-NLKGLQV 293
                                                L+ N+F   IP  ++     L  
Sbjct: 276 -------------------------------------LAENKFTGEIPDFLSGACDTLTG 298

Query: 294 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ-LVEFTFLEFFDVSDNYLTGA 352
           L+L  N+  G +P   G+ + LESL LS+N FSG++P   L++   L+  D+S N  +G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 353 IP 354
           +P
Sbjct: 359 LP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  175 bits (447), Expect = 2e-48
 Identities = 68/310 (21%), Positives = 118/310 (38%), Gaps = 68/310 (21%)

Query: 52  NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD-- 109
           N     + S + +L  +++L LS+++++G +       +  L+ LDL  N+  G +    
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSA-SLTSLDLSRNSLSGPVTTLT 120

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGNNQISDTFPSWL---GTIPNL 165
           +    S L  +++S N        S  +  + LE LDL  N IS               L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225
             L +  NK  G +       R   L  +D+S+N F+  +P           + + S L+
Sbjct: 181 KHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTGIPF----------LGDCSALQ 226

Query: 226 YLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI 285
           +L                                            +S N+       +I
Sbjct: 227 HLD-------------------------------------------ISGNKLSGDFSRAI 243

Query: 286 ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLV-EFTFLEFFDV 344
           +    L++LN+ +N   G IP     L +L+ L L+ N+F+G+IP  L      L   D+
Sbjct: 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 345 SDNYLTGAIP 354
           S N+  GA+P
Sbjct: 302 SGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (369), Expect = 7e-38
 Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 59/270 (21%)

Query: 90  SDELSVLDLQGNNF---FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146
            D+++ +DL        F  +  + +  + L  + LS++   G +       + L  LDL
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDL 107

Query: 147 GNNQISDTFPS--WLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK 204
             N +S    +   LG+   L  L + SN      K      + + L ++DLS N  +G 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS-GGLKLNSLEVLDLSANSISGA 166

Query: 205 LPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP 264
                 L           +L++L                                     
Sbjct: 167 NVVGWVLS------DGCGELKHL------------------------------------- 183

Query: 265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 324
                  +S N+    +   ++    L+ L++ +NN    IP  LG+ + L+ LD+S N+
Sbjct: 184 ------AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234

Query: 325 FSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
            SG   + +   T L+  ++S N   G IP
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 5e-18
 Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 60/201 (29%)

Query: 164 NLNVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS 222
            +  + L S            +    + L  + LSN+   G +               ++
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG----------FKCSA 100

Query: 223 QLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIP 282
            L  L                                            LS N     + 
Sbjct: 101 SLTSL-------------------------------------------DLSRNSLSGPVT 117

Query: 283 T--SIANLKGLQVLNLDNNNLQGHIP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEF--- 336
           T  S+ +  GL+ LN+ +N L      S    L +LE LDLS N  SG      V     
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 337 TFLEFFDVSDNYLTGAIPLGK 357
             L+   +S N ++G + + +
Sbjct: 178 GELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 291 LQVLNLDNNNLQ---GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
           +  ++L +  L      + S L +LT LESL LSN+  +G +         L   D+S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 348 YLTGAIPLGKQFA 360
            L+G +       
Sbjct: 111 SLSGPVTTLTSLG 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (541), Expect = 2e-65
 Identities = 84/342 (24%), Positives = 120/342 (35%), Gaps = 77/342 (22%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV--LPQCLGNFSDELSVLDLQG-NNFFGT 106
            N +  G +         V NL LS  NL     +P  L N    L+ L + G NN  G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGP 92

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
           IP    K ++L  + ++H    G IP  L     L  LD   N +S T P  + ++PNL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
            +                              NR +G +P              +     
Sbjct: 153 GI--------------------------TFDGNRISGAIPDSYGSF--------SKLFTS 178

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNK----IPDI-----LTGIILSSNRF 277
           +                              ++ N+    IP       L  + LS N  
Sbjct: 179 MT-----------------------------ISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 278 DRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFT 337
           +        + K  Q ++L  N+L   +   +G   NL  LDL NNR  G +PQ L +  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 338 FLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLS 379
           FL   +VS N L G IP G     FD +++  N  LCG PL 
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (440), Expect = 1e-50
 Identities = 76/315 (24%), Positives = 106/315 (33%), Gaps = 71/315 (22%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPP-----PE-TILYLVSNNSLTGEIPSWICNLNTVKN 70
           +N L+LS        NL  P P+P      P    LY+   N+L G IP  I  L  +  
Sbjct: 52  VNNLDLS------GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           L ++H N+SG +P  L      L  LD   N   GT+P +      L  I    N   G 
Sbjct: 106 LYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 131 IPRSLVNCSKL-EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
           IP S  + SKL   + +  N+++   P     + NL  + L  N   G            
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFGSDK 221

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
               I L+ N     L            +  +  L  L                      
Sbjct: 222 NTQKIHLAKNSLAFDLGK----------VGLSKNLNGL---------------------- 249

Query: 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 309
                                 L +NR    +P  +  LK L  LN+  NNL G IP   
Sbjct: 250 ---------------------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287

Query: 310 GNLTNLESLDLSNNR 324
           GNL   +    +NN+
Sbjct: 288 GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (385), Expect = 1e-42
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 23/218 (10%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNS 53
           + G IP  +    +  L+ L ++H       N+ G +P              L   S N+
Sbjct: 89  LVGPIPPAIA--KLTQLHYLYITHT------NVSGAIP---DFLSQIKTLVTLDF-SYNA 136

Query: 54  LTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIK 113
           L+G +P  I +L  +  +    N +SG +P   G+FS   + + +  N   G IP TF  
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 114 ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
            + L  +DLS N+ +G       +    + + L  N ++      +G   NLN L LR+N
Sbjct: 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
           + YG +  P+   +   LH +++S N   G++P    L
Sbjct: 255 RIYGTL--PQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (280), Expect = 8e-28
 Identities = 46/230 (20%), Positives = 67/230 (29%), Gaps = 58/230 (25%)

Query: 131 IPRSLVNCSKL----EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDC 186
           I + L N + L       D  N                +N L L           P +  
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 187 RFSKLHIIDLSN-NRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
               L+ + +   N   G +P           I   +QL YL                  
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPA---------IAKLTQLHYLY----------------- 107

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
                                     ++       IP  ++ +K L  L+   N L G +
Sbjct: 108 --------------------------ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL-EFFDVSDNYLTGAIP 354
           P  + +L NL  +    NR SG IP     F+ L     +S N LTG IP
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  188 bits (479), Expect = 4e-53
 Identities = 78/392 (19%), Positives = 127/392 (32%), Gaps = 45/392 (11%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-------VSNNS 53
           I       L    +  +  LNL  +    S +L   LP     +  +L       + +N 
Sbjct: 284 IQHLFSHSLH--GLFNVRYLNLKRSFTKQSISLAS-LPKIDDFSFQWLKCLEHLNMEDND 340

Query: 54  LTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSD----ELSVLDLQGNNFFGTIPD 109
           + G   +    L  +K L LS++  S         F       L +L+L  N       D
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSL-RTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168
            F     L V+DL  N     +          +  + L  N+      +    +P+L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS--QLRY 226
           +LR      +   P        L I+DLSNN     +       L+ ++I++     L  
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLAR 518

Query: 227 LQDVISPYGQVS--TDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTS 284
           L    +P G +     L                         L  + L SN FD +    
Sbjct: 519 LWKHANPGGPIYFLKGLSH-----------------------LHILNLESNGFDEIPVEV 555

Query: 285 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL-VEFTFLEFFD 343
             +L  L++++L  NNL     S   N  +L+SL+L  N  +    +     F  L   D
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 344 VSDNYLTGAIPLGKQFATFDNTSFDGNSGLCG 375
           +  N           F  + N +      L  
Sbjct: 616 MRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (399), Expect = 4e-42
 Identities = 73/361 (20%), Positives = 119/361 (32%), Gaps = 37/361 (10%)

Query: 16  YLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNLVLS 74
                + SH  LT        +P   P  I  L +++N L     +     + + +L + 
Sbjct: 5   SHEVADCSHLKLTQ-------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 134
            N +S + P+        L VL+LQ N        TF   + L  + L  N  Q      
Sbjct: 58  FNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
            V    L  LDL +N +S T       + NL  L+L +NK   +  E       S L  +
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 195 DLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSK 254
           +LS+N+         F            +L  L             L +      +    
Sbjct: 177 ELSSNQIKE-FSPGCF--------HAIGRLFGL------------FLNNVQLGPSLTEKL 215

Query: 255 GRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKG--LQVLNLDNNNLQGHIPSCLGNL 312
              +        +  + LS+++      T+   LK   L +L+L  NNL          L
Sbjct: 216 CLELANTS----IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 313 TNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSG 372
             LE   L  N         L     + + ++  ++   +I L       D+ SF     
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKC 330

Query: 373 L 373
           L
Sbjct: 331 L 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (398), Expect = 5e-42
 Identities = 73/354 (20%), Positives = 123/354 (34%), Gaps = 38/354 (10%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTVKNL 71
            +  L  LNL HN L+    L           T L+L  +NS+     +       +  L
Sbjct: 71  KLPMLKVLNLQHNELSQ---LSDKTFAFCTNLTELHL-MSNSIQKIKNNPFVKQKNLITL 126

Query: 72  VLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQG 129
            LSHN LS           + L  L L  N       +       S L  ++LS N  + 
Sbjct: 127 DLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLG---TIPNLNVLILRSNKFYGIIKEPRTDC 186
             P       +L  L L N Q+  +    L       ++  L L +++            
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 187 RFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYD 246
           +++ L ++DLS N     + + SF  L         QL Y              L     
Sbjct: 246 KWTNLTMLDLSYNNLNV-VGNDSFAWL--------PQLEYF------------FLEYNNI 284

Query: 247 YSLIMNSKGRM--MTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH 304
             L  +S   +  + Y  +    T   +S     ++   S   LK L+ LN+++N++ G 
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLV----EFTFLEFFDVSDNYLTGAIP 354
             +    L NL+ L LSN+  S +            + L   +++ N ++    
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 1e-40
 Identities = 67/376 (17%), Positives = 118/376 (31%), Gaps = 63/376 (16%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
           I     + L   +   L  L L                           S+N +    P 
Sbjct: 157 IQALKSEELDIFANSSLKKLEL---------------------------SSNQIKEFSPG 189

Query: 61  WICNLNTVKNLVLSHNNLSGVLPQ--CLGNFSDELSVLDLQGNNFFGTIPDTF--IKESR 116
               +  +  L L++  L   L +  CL   +  +  L L  +    T   TF  +K + 
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
           L ++DLS+N        S     +LE+  L  N I   F   L  + N+  L L+ +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 177 GIIK-------EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD 229
             I        +  +      L  +++ +N   G + S  F             L+YL  
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMF--------TGLINLKYLS- 359

Query: 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLK 289
            +S        L +    SL  +              L  + L+ N+  ++   + + L 
Sbjct: 360 -LSNSFTSLRTLTNETFVSLAHSP-------------LHILNLTKNKISKIESDAFSWLG 405

Query: 290 GLQVLNLDNNNLQGHIP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348
            L+VL+L  N +   +       L N+  + LS N++             L+   +    
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 349 LTGAIPLGKQFATFDN 364
           L         F    N
Sbjct: 466 LKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (372), Expect = 2e-38
 Identities = 68/360 (18%), Positives = 118/360 (32%), Gaps = 80/360 (22%)

Query: 14  MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-------VSNNSLTGEIPSWICNLN 66
              L +L++  N ++             PE    L       + +N L+           
Sbjct: 48  YSQLTSLDVGFNTISKL----------EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 67  TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 126
            +  L L  N++  +           L  LDL  N    T   T ++   L  + LS+N 
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 127 FQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII-KEPR 183
            Q        +   S L+ L+L +NQI +  P     I  L  L L + +    + ++  
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 184 TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIS 243
            +   + +  + LSN++ +    + +FL L        + L  L                
Sbjct: 217 LELANTSIRNLSLSNSQLST-TSNTTFLGL------KWTNLTMLD--------------- 254

Query: 244 TYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG 303
                                       LS N  + V   S A L  L+   L+ NN+Q 
Sbjct: 255 ----------------------------LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 304 HIPSCLGNLTNLESLDLSNNRFSGQIP----QQLVEFTF-----LEFFDVSDNYLTGAIP 354
                L  L N+  L+L  +     I      ++ +F+F     LE  ++ DN + G   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  139 bits (352), Expect = 8e-36
 Identities = 67/359 (18%), Positives = 105/359 (29%), Gaps = 84/359 (23%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTS-SNNLQGPLPVPPPETILYLVSNNSLTGEIP 59
           +        L      L  L+LS+N L    N+    LP        +L   N++     
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL---EYFFL-EYNNIQHLFS 289

Query: 60  SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV 119
             +  L  V+ L L  +                 +   +   +       +F     L  
Sbjct: 290 HSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS------DTFPSWLGTIPNLNVLILRSN 173
           +++  N   G           L++L L N+  S      +TF S       L++L L  N
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKN 391

Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP 233
           K   I            L ++DL  N    +L  + +  L          +  +      
Sbjct: 392 KISKIE--SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL--------ENIFEI------ 435

Query: 234 YGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQV 293
                                                 LS N++ ++   S A +  LQ 
Sbjct: 436 -------------------------------------YLSYNKYLQLTRNSFALVPSLQR 458

Query: 294 LNLDNNNLQG--HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           L L    L+     PS    L NL  LDLSNN  +      L     LE  D+  N L 
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (420), Expect = 4e-45
 Identities = 69/373 (18%), Positives = 131/373 (35%), Gaps = 52/373 (13%)

Query: 3   GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE------TILYLVSNNSLTG 56
            K+P +L   ++  +  +N++ N   S   L+                I+Y+  NN  T 
Sbjct: 263 TKLPTFLK--ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 57  EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESR 116
            + + +  +  +  L   +N L G LP   G+   +L+ L+L  N       +      +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQITEIPANFCGFTEQ 378

Query: 117 LGVIDLSHNLFQGRIPRSLV--NCSKLEFLDLGNNQISDTFPSWLGTIP-------NLNV 167
           +  +  +HN  +  IP      + S +  +D   N+I          +        N++ 
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
           + L +N+     KE  +    S L  I+L  N  T  +P  S    +     NT  L  +
Sbjct: 438 INLSNNQISKFPKELFSTG--SPLSSINLMGNMLTE-IPKNSLKDENE-NFKNTYLLTSI 493

Query: 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN 287
                    +  + ++     L  + +   + Y      L GI LS N F +  PT   N
Sbjct: 494 D--------LRFNKLT----KLSDDFRATTLPY------LVGIDLSYNSFSK-FPTQPLN 534

Query: 288 LKGLQVLNLDN------NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
              L+   + N      N      P  +    +L  L + +N     + +++     +  
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISV 591

Query: 342 FDVSDNYLTGAIP 354
            D+ DN       
Sbjct: 592 LDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (394), Expect = 1e-41
 Identities = 65/393 (16%), Positives = 122/393 (31%), Gaps = 74/393 (18%)

Query: 5   IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLP----------VPPPE-------TILY 47
           + K ++   +  L    + ++   + N  +                  +       T + 
Sbjct: 198 VSKAVMR--LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 48  LVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV--LPQCLGNFSD-----ELSVLDLQG 100
           +  N     ++P+++  L  ++ + ++ N       L       +D     ++ ++ +  
Sbjct: 256 V-YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 101 NNFF-GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL 159
           NN     +  +  K  +LG+++  +N  +G    +  +  KL  L+L  NQI++   ++ 
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFC 373

Query: 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIV 219
           G    +  L    NK   I          S +  ID S N     +  K+F  LD     
Sbjct: 374 GFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDP-TPF 430

Query: 220 NTSQLRYLQDVISPYGQVSTDL----ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSN 275
               +  +            +L    IS +   L                 L+ I L  N
Sbjct: 431 KGINVSSI------------NLSNNQISKFPKELFSTGSP-----------LSSINLMGN 467

Query: 276 RFDRV-------IPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNRFSG 327
               +          +  N   L  ++L  N L           L  L  +DLS N FS 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 328 QIP------QQLVEFTFLEFFDVSDNYLTGAIP 354
             P        L  F      D   N      P
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 3e-38
 Identities = 61/371 (16%), Positives = 107/371 (28%), Gaps = 87/371 (23%)

Query: 2   HGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSL 54
              +   L    M+ L  L   +N L              P          L L + N +
Sbjct: 319 TFPVETSL--QKMKKLGMLECLYNQLEGK----------LPAFGSEIKLASLNL-AYNQI 365

Query: 55  TGEIPSWICNLNTVKNLVLSHNNLSGVLPQ-CLGNFSDELSVLDLQGNNF-------FGT 106
           T    ++      V+NL  +HN L  +       + S  +S +D   N         F  
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS-VMSAIDFSYNEIGSVDGKNFDP 424

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD-------TFPSWL 159
           +  T  K   +  I+LS+N             S L  ++L  N +++             
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIV 219
                L  + LR NK   +  +         L  IDLS N F+   P++          +
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDD-FRATTLPYLVGIDLSYNSFSK-FPTQ---------PL 533

Query: 220 NTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR 279
           N+S L+                                        I        NR  R
Sbjct: 534 NSSTLKGF-------------------------------------GIRNQRDAQGNRTLR 556

Query: 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL 339
             P  I     L  L + +N+++  +   +    N+  LD+ +N         +  +   
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 340 EFFDVSDNYLT 350
             + +  +   
Sbjct: 614 GMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  135 bits (341), Expect = 2e-34
 Identities = 43/336 (12%), Positives = 93/336 (27%), Gaps = 46/336 (13%)

Query: 29  SSNNLQGPLPVPPPE-------TILYLVSNNSLTG----EIPSWICNLNTVKNLVLSHNN 77
                 G +   P          +L L  ++          P  I    + +       +
Sbjct: 89  EGFGASGRV---PDAIGQLTELEVLAL-GSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 78  LSGVLPQCLGNFS-DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 136
                          +L    +  +    +I  +     +   I    N     + ++++
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM 203

Query: 137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDL 196
             +KL    +GN+                        + Y              L  +++
Sbjct: 204 RLTKLRQFYMGNSPFVAENIC-----EAWENENSEYAQQYKTE--DLKWDNLKDLTDVEV 256

Query: 197 SNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR 256
            N     KLP+          +    +++ +   ++         IS         +   
Sbjct: 257 YNCPNLTKLPT---------FLKALPEMQLIN--VA-----CNRGISGEQLKDDWQALAD 300

Query: 257 MMTYNKIPDILTGIILSSNRFDRV-IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL 315
                K    +  I +  N      + TS+  +K L +L    N L+G +P+  G+   L
Sbjct: 301 APVGEK----IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKL 355

Query: 316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
            SL+L+ N+ +            +E    + N L  
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (336), Expect = 8e-34
 Identities = 40/351 (11%), Positives = 91/351 (25%), Gaps = 73/351 (20%)

Query: 17  LNALNLSHNLLTSSNNLQGP-LPVPPPETILYLV----SNNSLTGEIPSWICNLNTVKNL 71
           ++A            + Q   +   P E    L+    +++     I            +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 72  VLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 131
               NN++  + + +   +  L    +  + F         +       +  +       
Sbjct: 189 GQLSNNITF-VSKAVMRLTK-LRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKTE 241

Query: 132 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF------YGIIKEPRTD 185
                N   L  +++ N       P++L  +P + ++ +  N+           +     
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 186 CRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
               K+ II +  N      P ++ L           +L  L+                 
Sbjct: 302 PVGEKIQIIYIGYNNLKT-FPVETSLQ-------KMKKLGMLE----------------- 336

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
                                        N+       +  +   L  LNL  N +    
Sbjct: 337 --------------------------CLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIP 369

Query: 306 PSCLGNLTNLESLDLSNNRFSGQIPQ--QLVEFTFLEFFDVSDNYLTGAIP 354
            +  G    +E+L  ++N+    IP        + +   D S N +     
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  129 bits (325), Expect = 2e-32
 Identities = 44/335 (13%), Positives = 95/335 (28%), Gaps = 72/335 (21%)

Query: 44  TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG----VLPQCLGNFSDELSVLDLQ 99
           T L L      +G +P  I  L  ++ L L  +          P+ +             
Sbjct: 84  TGLSL-EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM-SDEQKQKM 141

Query: 100 GNNFFGTIPDTFIKE--SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS 157
             ++  T  D   +E  S L    ++ +  Q  I +S     K   +   +N I+     
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSK 200

Query: 158 WLGTIPNLNVLILRSNKFYGIIKE-----------------PRTDCRFSKLHIIDLSNNR 200
            +  +  L    + ++ F                                L  +++ N  
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY 260
              KLP+          +    +++ +                              +  
Sbjct: 261 NLTKLPT---------FLKALPEMQLIN-----------------------------VAC 282

Query: 261 NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLD 319
           N+       I     + D          + +Q++ +  NNL+   + + L  +  L  L+
Sbjct: 283 NRG------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 320 LSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
              N+  G++P        L   +++ N +T    
Sbjct: 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (270), Expect = 3e-25
 Identities = 44/314 (14%), Positives = 86/314 (27%), Gaps = 51/314 (16%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
            N S  G       N N  K L +      GV     G     ++ L L+G    G +PD
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDM-WGAQPGVSLNSNGR----VTGLSLEGFGASGRVPD 99

Query: 110 TFIKESRLGVIDLSHNLFQG----RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
              + + L V+ L  +  +       P+ +      E           TF  +       
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225
           +++    N         ++     K   I   +N  T  +            ++  ++LR
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK---------AVMRLTKLR 209

Query: 226 YLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI 285
                                  +  +          I +          +  +      
Sbjct: 210 QF--------------------YMGNSP----FVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 286 ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF--------SGQIPQQLVEFT 337
            NLK L  + + N      +P+ L  L  ++ ++++ NR           Q         
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 338 FLEFFDVSDNYLTG 351
            ++   +  N L  
Sbjct: 306 KIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 9e-21
 Identities = 30/250 (12%), Positives = 71/250 (28%), Gaps = 40/250 (16%)

Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS----DTFPSWLGTIPNLNVLIL 170
            R+  + L      GR+P ++   ++LE L LG++          P  +    +      
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKI-VNTSQLRYLQD 229
               +     +      FS L    ++++     +   S + L   +I   ++ + ++  
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200

Query: 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLK 289
            +         L                         L    + ++ F            
Sbjct: 201 AVM-------RLTK-----------------------LRQFYMGNSPFVAENICEAWEN- 229

Query: 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349
                N +             NL +L  +++ N     ++P  L     ++  +V+ N  
Sbjct: 230 ----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 350 TGAIPLGKQF 359
                L   +
Sbjct: 286 ISGEQLKDDW 295

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 42/251 (16%), Positives = 74/251 (29%), Gaps = 48/251 (19%)

Query: 5   IPKWLLDPSMQYLNALNLSHNLLTS-SNNLQGPLPV--------------------PPPE 43
           IP      S+  ++A++ S+N + S       PL                       P E
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 44  TILYL-------VSNNSLTG-------EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF 89
                       +  N LT        +      N   + ++ L  N L+ +        
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 90  SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL------FQGRIPRSLVNCSKLEF 143
              L  +DL   N F   P   +  S L    + +             P  +  C  L  
Sbjct: 512 LPYLVGIDL-SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 144 LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTG 203
           L +G+N I           PN++VL ++ N    I       C + +  +  L  ++   
Sbjct: 571 LQIGSNDIRKVNEKIT---PNISVLDIKDNPNISID--LSYVCPYIEAGMYMLFYDKTQ- 624

Query: 204 KLPSKSFLCLD 214
            +     L + 
Sbjct: 625 DIRGCDALDIK 635

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  148 bits (376), Expect = 3e-39
 Identities = 65/382 (17%), Positives = 116/382 (30%), Gaps = 59/382 (15%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE------TILYLVSNNSL 54
               + K  +   +  L    L      +  NL+                   L   +  
Sbjct: 212 DSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 55  TGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLD----------------L 98
             +I      L  V +  L    +  V           L +++                L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 99  QGNNFFGTIPDTFIKESRLGVIDLSHN--LFQGRIPRSLVNCSKLEFLDLGNNQISDTFP 156
              +  G    + +    L  +DLS N   F+G   +S    + L++LDL  N +     
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 157 SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAM 216
           ++LG +  L  L  + +    +  E         L  +D+S+                  
Sbjct: 391 NFLG-LEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGI-------- 440

Query: 217 KIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--LTGIILSS 274
                S L  L                     +  NS       +   ++  LT + LS 
Sbjct: 441 -FNGLSSLEVL--------------------KMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 275 NRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLV 334
            + +++ PT+  +L  LQVLN+ +NN           L +L+ LD S N       Q+L 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 335 E-FTFLEFFDVSDNYLTGAIPL 355
              + L F +++ N        
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (353), Expect = 4e-36
 Identities = 55/353 (15%), Positives = 107/353 (30%), Gaps = 46/353 (13%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLTGEIPSWICNLNTVK 69
              L+LS N L           +            +L L S   +         +L+ + 
Sbjct: 30  TKNLDLSFNPLRH---------LGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLS 79

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
            L+L+ N +  +        S  L  L     N              L  ++++HNL Q 
Sbjct: 80  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 130 -RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV----LILRSNKFYGIIKEPRT 184
            ++P    N + LE LDL +N+I   + + L  +  + +    L L  N    I      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-- 196

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244
             +  +LH + L NN  +  +       L  +++       +           +   +  
Sbjct: 197 -FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR----------NEGNLEK 245

Query: 245 YDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH 304
           +D S +       +   +    L  +    +     I      L  +   +L +  ++  
Sbjct: 246 FDKSALEGLCNLTIEEFR----LAYLDYYLDD----IIDLFNCLTNVSSFSLVSVTIERV 297

Query: 305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
                      + L+L N +F      +L     L F           + L  
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  134 bits (339), Expect = 3e-34
 Identities = 58/319 (18%), Positives = 97/319 (30%), Gaps = 40/319 (12%)

Query: 47  YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT 106
           Y     +   +IP  +    + KNL LS N L  +      +F  EL VLDL        
Sbjct: 12  YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTI 67

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
               +   S L  + L+ N  Q     +    S L+ L      ++      +G +  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
            L +  N      K P      + L  +DLS+N+      +          +    Q+  
Sbjct: 128 ELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCT---------DLRVLHQMPL 177

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD-RVIPTSI 285
           L   +     +S + ++          +            L  + L +N     V+ T I
Sbjct: 178 LNLSLD----LSLNPMNFIQPGAFKEIR------------LHKLTLRNNFDSLNVMKTCI 221

Query: 286 ANLKGLQVLNLDNNNLQGH------IPSCLGNLTNLESLDLSNNR---FSGQIPQQLVEF 336
             L GL+V  L     +          S L  L NL   +        +   I       
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 337 TFLEFFDVSDNYLTGAIPL 355
           T +  F +    +      
Sbjct: 282 TNVSSFSLVSVTIERVKDF 300

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (328), Expect = 8e-33
 Identities = 66/376 (17%), Positives = 114/376 (30%), Gaps = 47/376 (12%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-------VSNNS 53
           I            +  L  L      L S               I +L       V++N 
Sbjct: 88  IQSLALGAFS--GLSSLQKLVAVETNLASL----------ENFPIGHLKTLKELNVAHNL 135

Query: 54  LTG-EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS---DELSVLDLQGNNFFGTIPD 109
           +   ++P +  NL  +++L LS N +  +    L            LDL  N      P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 110 TFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDL------GNNQISDTFPSWLGTI 162
            F KE RL  + L +N     + +  +   + LE   L          +     S L  +
Sbjct: 196 AF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 163 PNLNVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
            NL +   R       + +        + +    L +      +   S+           
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN---------- 303

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNR--FDR 279
              ++L+ V   +GQ  T  + +       ++KG           L  + LS N   F  
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ-LVEFTF 338
               S      L+ L+L  N +   + S    L  LE LD  ++           +    
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 339 LEFFDVSDNYLTGAIP 354
           L + D+S  +   A  
Sbjct: 423 LIYLDISHTHTRVAFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (319), Expect = 1e-31
 Identities = 45/213 (21%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
             G   +         L  L+LS N + + ++    L        L    +++L      
Sbjct: 361 FKGCCSQSDF--GTTSLKYLDLSFNGVITMSSNFLGLE---QLEHLDF-QHSNLKQMSEF 414

Query: 61  WI-CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-PDTFIKESRLG 118
            +  +L  +  L +SH +            S  L VL + GN+F     PD F +   L 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
            +DLS    +   P +  + S L+ L++ +N            + +L VL    N     
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 179 IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
            K+       S L  ++L+ N F      +SFL
Sbjct: 534 KKQELQHF-PSSLAFLNLTQNDFACTCEHQSFL 565

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (315), Expect = 5e-31
 Identities = 59/379 (15%), Positives = 112/379 (29%), Gaps = 75/379 (19%)

Query: 13  SMQYLNALNLSHNLLTSS--NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKN 70
           ++  L  L+LS N + S    +L+    +P     L L S N +    P     +     
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL-SLNPMNFIQPGAFKEIRL-HK 204

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT------IPDTFIKESRLGVIDLSH 124
           L L +N  S  + +        L V  L    F                   L + +   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 125 N---LFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGI-- 178
                +   I       + +    L +  I      S+     +L ++  +  +F  +  
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 179 ------------IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
                            ++     L  +DLS N         SF    +     T+ L+Y
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL-------SFKGCCSQSDFGTTSLKY 377

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI---------LTGIILSSNRF 277
           L                              +++N +  +         L  +    +  
Sbjct: 378 L-----------------------------DLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 278 DRVIPTSI-ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI-PQQLVE 335
            ++   S+  +L+ L  L++ + + +         L++LE L ++ N F     P    E
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 336 FTFLEFFDVSDNYLTGAIP 354
              L F D+S   L    P
Sbjct: 469 LRNLTFLDLSQCQLEQLSP 487

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           L  + LS      +   +  +L  L  L L  N +Q         L++L+ L       +
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 327 GQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
                 +     L+  +V+ N +     L + F+   N
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTN 150

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  143 bits (362), Expect = 2e-37
 Identities = 65/350 (18%), Positives = 103/350 (29%), Gaps = 35/350 (10%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNLVLSHNNL 78
            N  +  L         +P   P +   L  S N L     +    L  +  L L+   +
Sbjct: 17  YNCENLGLNE-------IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 79  SGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 138
             +      +    L  L L  N               L  +              L N 
Sbjct: 70  YWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 139 SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN 198
             LE L LG+N IS            L VL  ++N  + + KE  +  + +    ++L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 199 NRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMM 258
           N   G +   +F                 Q +     Q    +      S I +      
Sbjct: 189 NDIAG-IEPGAF------------DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 259 TYNKIPDI------------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306
                 DI            +  I L  + F  +   +     GLQ L+L   +L   +P
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
           S L  L+ L+ L LS N+F          F  L    +  N     +  G
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (347), Expect = 3e-35
 Identities = 69/360 (19%), Positives = 103/360 (28%), Gaps = 62/360 (17%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
               I K L + ++Q L             +              + L   +       +
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL-QKHYFFNISSN 272

Query: 61  WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120
                + ++ L L+  +LS  LP  L   S  L  L L  N F      +      L  +
Sbjct: 273 TFHCFSGLQELDLTATHLSE-LPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 121 DLSHNLFQGRI-PRSLVNCSKLEFLDLGNNQI--SDTFPSWLGTIPNLNVLILRSNKFYG 177
            +  N  +  +    L N   L  LDL ++ I  SD     L  + +L  L L  N+   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 178 IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQV 237
           +  E   +C   +L ++DL+  R   K     F  L          L+ L          
Sbjct: 391 LKTEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNL--------HLLKVL---------- 430

Query: 238 STDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297
                                             LS +  D         L  LQ LNL 
Sbjct: 431 ---------------------------------NLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 298 NNNLQGHIPSC---LGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
            N+           L  L  LE L LS    S            +   D+S N LT +  
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (343), Expect = 7e-35
 Identities = 64/348 (18%), Positives = 116/348 (33%), Gaps = 36/348 (10%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNL 71
             + L  L+  +N +   +     +      T L L ++ N +   I     +    ++L
Sbjct: 151 PTEKLKVLDFQNNAIHYLSK--EDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSL 207

Query: 72  VLSHNNLSGVLPQCLGNFS-DELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQ 128
                    V+ + L N +   L +   +  +     P  F  + E  +  I+L  + F 
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
                +    S L+ LDL    +S   PS L  +  L  L+L +NKF  +     +   F
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC--QISASNF 324

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248
             L  + +  N    +L +            N   LR L            DL     + 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLE--------NLENLREL------------DL----SHD 360

Query: 249 LIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP-S 307
            I  S    +    +   L  + LS N    +   +      L++L+L    L+     S
Sbjct: 361 DIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 308 CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL 355
              NL  L+ L+LS++       Q       L+  ++  N+       
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (342), Expect = 1e-34
 Identities = 65/349 (18%), Positives = 100/349 (28%), Gaps = 65/349 (18%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLV----SNNSLTGEIPSWICNL--NTVKN 70
            ++          + NL          TI  L      +       P+    L   +V++
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           + L  +    +       FS  L  LDL   +    +P   +  S L  + LS N F+  
Sbjct: 259 INLQKHYFFNISSNTFHCFSG-LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENL 316

Query: 131 IPRSLVNCSKLEFLDL-GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
              S  N   L  L + GN +  +     L  + NL  L L  +               S
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
            L  ++LS N     L +++F            QL  L                      
Sbjct: 377 HLQSLNLSYNEPLS-LKTEAFKEC--------PQLELLD--------------------- 406

Query: 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI-ANLKGLQVLNLDNNNLQGHIPSC 308
                                 L+  R       S   NL  L+VLNL ++ L       
Sbjct: 407 ----------------------LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 309 LGNLTNLESLDLSNNRFSGQIPQQLVEF---TFLEFFDVSDNYLTGAIP 354
              L  L+ L+L  N F     Q+         LE   +S   L+    
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  134 bits (340), Expect = 2e-34
 Identities = 69/355 (19%), Positives = 124/355 (34%), Gaps = 59/355 (16%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
           S   L+ L L+ N L      +  L  P     L+      ++      + N  T+++L 
Sbjct: 79  SQHRLDTLVLTANPLIFMA--ETALSGPKALKHLFF-IQTGISSIDFIPLHNQKTLESLY 135

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQGR 130
           L  N++S +           L VLD Q N       +    ++++    ++L+ N   G 
Sbjct: 136 LGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG- 193

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLG--TIPNLNVLILRSNKFYGIIKEPRTDCRF 188
           I     + +  + L+ G  Q        L   TI +L +          I          
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248
             +  I+L  + F   + S +F C         S L+ L                     
Sbjct: 254 MSVESINLQKHYFFN-ISSNTFHCF--------SGLQELD-------------------- 284

Query: 249 LIMNSKGRMMTYNKIPDI---------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
                    +T   + ++         L  ++LS+N+F+ +   S +N   L  L++  N
Sbjct: 285 ---------LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 300 NLQGHIPS-CLGNLTNLESLDLSNNR--FSGQIPQQLVEFTFLEFFDVSDNYLTG 351
             +  + + CL NL NL  LDLS++    S     QL   + L+  ++S N    
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  134 bits (339), Expect = 3e-34
 Identities = 65/341 (19%), Positives = 121/341 (35%), Gaps = 39/341 (11%)

Query: 16  YLNALNLSHNLLTS-SNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNLVL 73
            + ++NL  +   + S+N            +  L ++   L+ E+PS +  L+T+K LVL
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFS-----GLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 74  SHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKE-SRLGVIDLSHNLFQ--GR 130
           S N    +      NF   L+ L ++GN     +    ++    L  +DLSH+  +    
Sbjct: 309 SANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK 190
               L N S L+ L+L  N+            P L +L L   +                
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQSPFQNLHL 426

Query: 191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLI 250
           L +++LS++        + F  L A++ +N                    L         
Sbjct: 427 LKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGR------- 477

Query: 251 MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 310
                           L  ++LS      +   +  +LK +  ++L +N L       L 
Sbjct: 478 ----------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 311 NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
           +L  +  L+L++N  S  +P  L   +     ++  N L  
Sbjct: 522 HLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 8e-29
 Identities = 59/328 (17%), Positives = 103/328 (31%), Gaps = 55/328 (16%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
               L  L+L+   L+   +    L        L L S N           N  ++ +L 
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTL---KKLVL-SANKFENLCQISASNFPSLTHLS 331

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNN--FFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           +  N     L        + L  LDL  ++              S L  ++LS+N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
              +   C +LE LDL   ++      S    +  L VL L  +         +      
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLP 449

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
            L  ++L  N F      K+        +    +L  L             L        
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNS------LQTLGRLEIL------------VL-------- 483

Query: 250 IMNSKGRMMTYNKIPDI----------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
                    ++  +  I          +  + LS NR       ++++LKG+  LNL +N
Sbjct: 484 ---------SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRFSG 327
           ++   +PS L  L+   +++L  N    
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDC 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  144 bits (365), Expect = 3e-37
 Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 54/369 (14%)

Query: 3   GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLT 55
            ++P +L    +  L +LN++ N   S+  L+        +        I Y+   N+L 
Sbjct: 505 TQLPDFL--YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLE 561

Query: 56  GEIPSW-ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKE 114
               S  +  +  +  L   HN +  +  +  G    +L+ L L  N       D     
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNV-KLTDLKLDYNQIEEIPEDFCAFT 618

Query: 115 SRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLGTIP-----NLNV 167
            ++  +  SHN  +  IP   +  +   +  +D   N+I     +   ++      N + 
Sbjct: 619 DQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
           + L  N+      E       S +  I LSNN  T  +P  S    D     NT  L  +
Sbjct: 678 VTLSYNEIQKFPTE--LFATGSPISTIILSNNLMT-SIPENSLKPKDGN-YKNTYLLTTI 733

Query: 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN 287
                    +  + +++        +    + Y      L+ + +S N F    PT   N
Sbjct: 734 D--------LRFNKLTSLSDDFRATT----LPY------LSNMDVSYNCFSS-FPTQPLN 774

Query: 288 LKGLQVLNL------DNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
              L+   +      + N +    P+ +    +L  L + +N     + ++L     L  
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYI 831

Query: 342 FDVSDNYLT 350
            D++DN   
Sbjct: 832 LDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (342), Expect = 2e-34
 Identities = 52/395 (13%), Positives = 106/395 (26%), Gaps = 106/395 (26%)

Query: 15  QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL------VSNNSLTGEIPSWICNLNTV 68
           Q LN  +L  + +  +  ++        ++ + L         N +T  I   I  L  +
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPI----KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKL 450

Query: 69  KNLVLSHNNLSGV-------------------LPQCLGNFSDELSVLDLQGNNFFGTIPD 109
           + +  +++  +                           N   +L+ ++L        +PD
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPD 509

Query: 110 TFIKESRLGVIDLSHNLFQG---------RIPRSLVNCSKLEFLDLGNNQISDTFPSW-L 159
                  L  ++++ N             R+        K++   +G N + +   S  L
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569

Query: 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIV 219
             +  L +L    NK    ++         KL  + L  N+    +P             
Sbjct: 570 QKMVKLGLLDCVHNK----VRHLEAFGTNVKLTDLKLDYNQIEE-IPEDFC--------A 616

Query: 220 NTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-----------LT 268
            T Q+  L                               ++NK+  I           + 
Sbjct: 617 FTDQVEGL-----------------------------GFSHNKLKYIPNIFNAKSVYVMG 647

Query: 269 GIILSSNRFDRVIPT-----SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
            +  S N+                      + L  N +Q          + + ++ LSNN
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 324 RFS-------GQIPQQLVEFTFLEFFDVSDNYLTG 351
             +                   L   D+  N LT 
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  134 bits (339), Expect = 5e-34
 Identities = 62/361 (17%), Positives = 102/361 (28%), Gaps = 74/361 (20%)

Query: 5   IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGP--LPVPPPETILYLVSNNSLTGEIPSWI 62
            P       M  L  L+  HN +           L      T L L   N +  EIP   
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKL------TDLKL-DYNQIE-EIPEDF 614

Query: 63  C-NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFI-----KESR 116
           C   + V+ L  SHN L  +           +  +D   N       +        K   
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD-------TFPSWLGTIPNLNVLI 169
              + LS+N  Q          S +  + L NN ++                   L  + 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD 229
           LR NK   +  +         L  +D+S N F+   P+         + +N+SQL+    
Sbjct: 735 LRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSS-FPT---------QPLNSSQLKAF-- 781

Query: 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLK 289
                                               I        NR  R  PT I    
Sbjct: 782 -----------------------------------GIRHQRDAEGNRILRQWPTGITTCP 806

Query: 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349
            L  L + +N+++  +   L     L  LD+++N         +  +     + +  +  
Sbjct: 807 SLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

Query: 350 T 350
            
Sbjct: 864 Q 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 1e-30
 Identities = 47/402 (11%), Positives = 109/402 (27%), Gaps = 94/402 (23%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSN----NSLTG 56
             G++P  +    +  L  L+   +  T S  L G   + P  +             +  
Sbjct: 335 AKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 57  EIPSWICNLNTVKNLVLSHNNLSGV----------------------LPQCLGNFSDELS 94
           +    +   + +++ +  +  +  +                      + + +   + +L 
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQ 451

Query: 95  VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
           ++    + F                 +  +         S  N   L  ++L N      
Sbjct: 452 IIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 155 FPSWLGTIPNLNVLILRSNKFYGIIKE-------PRTDCRFSKLHIIDLSNNRFTGKLPS 207
            P +L  +P L  L +  N+     +           +    K+ I  +  N      P+
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA 565

Query: 208 KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI- 266
            + L           +L  L                                +NK+  + 
Sbjct: 566 SASLQ-------KMVKLGLLD-----------------------------CVHNKVRHLE 589

Query: 267 -------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSC--LGNLTNLES 317
                  LT + L  N+ + +     A    ++ L   +N L+  IP+     ++  + S
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 318 LDLSNNRFSGQIPQQLVEFTF-----LEFFDVSDNYLTGAIP 354
           +D S N+   +                    +S N +     
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (275), Expect = 9e-26
 Identities = 38/348 (10%), Positives = 86/348 (24%), Gaps = 76/348 (21%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLTGEIPSWICNLNTVK 69
           +  L+L+                 P          +L     +S T     +     T  
Sbjct: 325 VTGLSLAGFGAKGR---------VPDAIGQLTELKVLSF-GTHSETVSGRLFGDEELTPD 374

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF-----FGTIPDTFIKESRLGVIDLSH 124
                 + +     +   ++   L++ DL  +          I        +   I    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT 184
           N     I +++   +KL+ +   N+       ++     +         K Y       +
Sbjct: 435 NRITF-ISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENE--ELS 486

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244
                 L  ++L N     +LP           + +  +L+ L                 
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPD---------FLYDLPELQSLN---------------- 521

Query: 245 YDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG- 303
                        +  N+           +      +         +Q+  +  NNL+  
Sbjct: 522 -------------IACNRGISAAQLKADWTR-----LADDEDTGPKIQIFYMGYNNLEEF 563

Query: 304 HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
              + L  +  L  LD  +N+      +       L    +  N +  
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (267), Expect = 9e-25
 Identities = 44/324 (13%), Positives = 88/324 (27%), Gaps = 77/324 (23%)

Query: 52  NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF 111
           +    +    + N   V  L L+     G +P  +G  + EL VL    ++   +     
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFG 367

Query: 112 IKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLIL 170
            +E    + +   +  +    +  L    +L   DL  + I+      +  I   + + L
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISL 425

Query: 171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDV 230
           +  +                   I    NR T  +            I   ++L+ +   
Sbjct: 426 KDTQ-------------------IGNLTNRITF-ISKA---------IQRLTKLQIIY-- 454

Query: 231 ISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-----LTGIILSSNRFDRVIPTSI 285
                                         +                   +       S 
Sbjct: 455 ---------------------------FANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 286 ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG---------QIPQQLVEF 336
           +NLK L  + L N      +P  L +L  L+SL+++ NR            ++       
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 337 TFLEFFDVSDNYLTGAIPLGKQFA 360
             ++ F +  N L    P      
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 25/153 (16%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPE------TILYLVSNNSLTGEIPSWICNLN 66
           +   L  ++L  N LTS       L            + + + S N  +   P+   N +
Sbjct: 726 NTYLLTTIDLRFNKLTS-------LSDDFRATTLPYLSNMDV-SYNCFS-SFPTQPLNSS 776

Query: 67  TVK------NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120
            +K            N +    P  +      L  L +  N+    + +      +L ++
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDI-RKVDEKLT--PQLYIL 832

Query: 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
           D++ N        S+    +     L  ++  D
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (329), Expect = 1e-32
 Identities = 67/356 (18%), Positives = 118/356 (33%), Gaps = 28/356 (7%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTVKNLVLSH 75
              L LS N + +        P      +L L  +      I      NL  ++ L L  
Sbjct: 26  TERLLLSFNYIRTVTA--SSFPFLEQLQLLEL-GSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQG-RIP 132
           + +  + P         L  L L        +     F     L  +DLS N  +   + 
Sbjct: 83  SKIYFLHPDAFQGLFH-LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLG--TIPNLNVLILRSNKFYGIIKEPRTDC---- 186
            S    + L+ +D  +NQI       L       L+   L +N  Y  +      C    
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 187 RFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYD 246
           R   L I+D+S N +T  +       +   +  +     ++      +  +         
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD--PDQNT 259

Query: 247 YSLIMNSKGRM--MTYNKIPDI----------LTGIILSSNRFDRVIPTSIANLKGLQVL 294
           ++ +  S  R   +++  +  +          L  + L+ N+ +++   +   L  LQVL
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 295 NLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           NL  N L     S    L  +  +DL  N  +    Q       L+  D+ DN LT
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (299), Expect = 6e-29
 Identities = 76/378 (20%), Positives = 126/378 (33%), Gaps = 40/378 (10%)

Query: 16  YLNALNLSHNLLTS--SNNLQGPLPVPPPETILYL-------VSNNSLTGEIPSWICNL- 65
            L  L++S N  T   + N    +      +++            +++     +    L 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 66  -NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
            ++V++L LSH  +  +  +       +L VL+L  N       + F     L V++LS+
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT 184
           NL       +     K+ ++DL  N I+         +  L  L LR N          T
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-------TT 376

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244
                 +  I LS N+    LP  +          N   L   +            +   
Sbjct: 377 IHFIPSIPDIFLSGNKLV-TLPKINLTA-------NLIHLSENRLENLDILYFLLRVPHL 428

Query: 245 YDYSLIMNSKGRMMTYNKIPDILTGI---ILSSNRFDRVIPTSI-----ANLKGLQVLNL 296
               L  N +    + ++ P     +    L  N       T +       L  LQVL L
Sbjct: 429 QILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 297 DNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
           ++N L    P    +LT L  L L++NR +      L     LE  D+S N L    P  
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNP-- 543

Query: 357 KQFATFDNTSFDGNSGLC 374
             F +        N  +C
Sbjct: 544 DVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.2 bits (203), Expect = 7e-17
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 25/217 (11%)

Query: 13  SMQYLNALNLSHNLLT-------------SSNNLQGPLPVPPPETILYLVSNNSLTGEIP 59
            ++ L  L+L  N LT             S N L     +     +++L  N     +I 
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 60  SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-----PDTFIKE 114
            ++  +  ++ L+L+ N  S        + +  L  L L  N            D F   
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
           S L V+ L+HN      P    + + L  L L +N+++    + L    NL +L +  N+
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQ 537

Query: 175 FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
                        F  L ++D+++N+F  +    +F+
Sbjct: 538 LLAPNP-----DVFVSLSVLDITHNKFICECELSTFI 569

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (321), Expect = 6e-32
 Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 17/311 (5%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
            +  L+ ++P  I   ++ KN+ LS N L  +      NFS EL  LDL           
Sbjct: 19  MDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDK 74

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
            +     L  + L+ N  Q   P S    + LE L     +++      +G +  L  L 
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS------Q 223
           +  N  +   K P      + L  +DLS N     +       L     VN S       
Sbjct: 135 VAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 224 LRYLQD-VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIP 282
           + ++QD            L   ++ S IM +  + +    +  ++ G        +   P
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 283 TSIANLKGLQVLNLD--NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
           + +  L  + +        N           L N+ ++ L+         + + +    +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQ 310

Query: 341 FFDVSDNYLTG 351
              +    L  
Sbjct: 311 SLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  126 bits (318), Expect = 2e-31
 Identities = 55/351 (15%), Positives = 101/351 (28%), Gaps = 54/351 (15%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLV---------SNNSLTGEIPSWIC 63
           ++  L+   L         NL+    +  P  +  L          +  +   +      
Sbjct: 227 NLAGLHVHRLILGEFKDERNLE----IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
            L  V  + L+  ++  +          +   L +                  L  + L+
Sbjct: 283 CLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLT 336

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS--WLGTIPNLNVLILRSNKFYGIIKE 181
            N  +G I    V    L +LDL  N +S +           +L  L L  N     I  
Sbjct: 337 MN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIM 391

Query: 182 PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL 241
                   +L  +D  ++         +FL L         +L YL            D+
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSL--------EKLLYL------------DI 431

Query: 242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI-ANLKGLQVLNLDNNN 300
             T            + +       L  + ++ N F     +++ AN   L  L+L    
Sbjct: 432 SYTNTKIDFDGIFLGLTS-------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
           L+         L  L+ L++S+N           +   L   D S N +  
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 3e-31
 Identities = 59/338 (17%), Positives = 112/338 (33%), Gaps = 68/338 (20%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  ++A++L+   +    ++            L +     L  + P+   +L  +K+L 
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKW----QSLSI-IRCQLK-QFPTL--DLPFLKSLT 334

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQGR 130
           L+ N  S             LS LDL  N    +   ++  +  + L  +DLS N     
Sbjct: 335 LTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
           +  + +   +L+ LD  ++ +      S   ++  L  L +                  +
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLT 448

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
            L+ + ++ N F     S  F         NT+ L +L                      
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVF--------ANTTNLTFL---------------------- 478

Query: 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 309
                                 LS  + +++       L  LQ+LN+ +NNL     S  
Sbjct: 479 ---------------------DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 310 GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
             L +L +LD S NR              L FF++++N
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  119 bits (301), Expect = 3e-29
 Identities = 55/353 (15%), Positives = 112/353 (31%), Gaps = 40/353 (11%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLTGEIPSWICNLNTVK 69
              ++LS N L           +             L L S   +          L+ + 
Sbjct: 34  TKNIDLSFNPLKI---------LKSYSFSNFSELQWLDL-SRCEIETIEDKAWHGLHHLS 83

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
           NL+L+ N +    P      +  L  L                +   L  ++++HN    
Sbjct: 84  NLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 130 -RIPRSLVNCSKLEFLDLGNNQIS----DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT 184
            ++P    N + L  +DL  N I     +              L +  N    I      
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI---QDQ 199

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST----- 239
             +  KLH + L  N  +  +       L  + +       +  +      + S      
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 240 -DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDN 298
              I  +  +   +    ++ ++ + + ++ + L+      +    +      Q L++  
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSIKYL--EDVPKHFKWQSLSIIR 316

Query: 299 NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
             L+   P+   +L  L+SL L+ N+ S  I  + V    L + D+S N L+ 
Sbjct: 317 CQLK-QFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (290), Expect = 7e-28
 Identities = 59/357 (16%), Positives = 98/357 (27%), Gaps = 68/357 (19%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICN-------LNTVK 69
             +L++S N +     +Q           L L   N  +  I                + 
Sbjct: 183 NLSLDMSLNPIDF---IQDQAFQGIKLHELTL-RGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 70  NLVLSHNNLSGVLPQCLGNFSD-ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
                  NL    P  +    D  +    L   N F      F   + +  + L+     
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI- 297

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
            +    +    K + L +   Q+       L   P L  L L  NK              
Sbjct: 298 -KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK----GSISFKKVAL 349

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248
             L  +DLS N  +      S+  L       T+ LR+L                     
Sbjct: 350 PSLSYLDLSRNALS-FSGCCSYSDL------GTNSLRHLD-------------------- 382

Query: 249 LIMNSKGRMMTYNKIPDI---------LTGIILSSNRFDRVIPTS-IANLKGLQVLNLDN 298
                    +++N    +         L  +    +   RV   S   +L+ L  L++  
Sbjct: 383 ---------LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 299 NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ-LVEFTFLEFFDVSDNYLTGAIP 354
            N +         LT+L +L ++ N F            T L F D+S   L     
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 1e-24
 Identities = 63/374 (16%), Positives = 108/374 (28%), Gaps = 63/374 (16%)

Query: 13  SMQYLNALNLSHNLLTSSN--------NLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 64
            + +L+ L L+ N + S +        +L+           L       L       I  
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLE----------NLVA-VETKLASLESFPIGQ 126

Query: 65  LNTVKNLVLSHNNLSGV-LPQCLGNFSDELSVLDLQGNNFFGTIPDTF----IKESRLGV 119
           L T+K L ++HN +    LP    N +  L  +DL  N       +              
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDL-GNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
           +D+S N     I        KL  L L GN   S+   + L  +  L+V  L   +F   
Sbjct: 186 LDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 179 IKEPRTDCRF------SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVIS 232
                 +           +    L+            F CL        + +  +     
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS-DDIVKFHCL--------ANVSAM----- 290

Query: 233 PYGQVSTDLISTYDYSLIMNS-KGRMMTYNKIPDI-------LTGIILSSNRFDRVIPTS 284
               ++   I   +        +   +   ++          L  + L+ N+    I   
Sbjct: 291 ---SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFK 345

Query: 285 IANLKGLQVLNLDNNNLQGHIPSCLGNL--TNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342
              L  L  L+L  N L         +L   +L  LDLS N     +    +    L+  
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404

Query: 343 DVSDNYLTGAIPLG 356
           D   + L       
Sbjct: 405 DFQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (264), Expect = 2e-24
 Identities = 54/373 (14%), Positives = 105/373 (28%), Gaps = 88/373 (23%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  L  LN++HN + S                            +P++  NL  + ++ 
Sbjct: 126 QLITLKKLNVAHNFIHSCK--------------------------LPAYFSNLTNLVHVD 159

Query: 73  LSHNNLSGVLPQCLGNFSD---ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
           LS+N +  +    L    +       LD+   N    I D   +  +L  + L  N    
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMS-LNPIDFIQDQAFQGIKLHELTLRGNFNSS 218

Query: 130 RIPR-SLVNCSKLEFLDL------GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEP 182
            I +  L N + L    L          +    PS +  + ++ +   R         + 
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 183 RTDCRFSKLHIIDLSNNRFTG-----KLPSKSFLCLDAMKI-----VNTSQLRYLQDVIS 232
                 + +  + L+           K      L +   ++     ++   L+ L     
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL----- 333

Query: 233 PYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTS 284
                                    +T NK            L+ + LS N        S
Sbjct: 334 ------------------------TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 285 IANLKG--LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-TFLEF 341
            ++L    L+ L+L  N     + +    L  L+ LD  ++                L +
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 342 FDVSDNYLTGAIP 354
            D+S         
Sbjct: 429 LDISYTNTKIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 46/329 (13%), Positives = 84/329 (25%), Gaps = 68/329 (20%)

Query: 56  GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKES 115
           G +   I  +  +         LS V P  + +       +DL  N        +F   S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSKV-PDDIPSS---TKNIDLSFNPLKILKSYSFSNFS 56

Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
            L  +DLS    +    ++      L  L L  N I    P     + +L  L+    K 
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
             +        +   L  +++++N          F  L        + L ++        
Sbjct: 117 ASLE--SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--------TNLVHVD------- 159

Query: 236 QVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGL---- 291
                                               LS N    +    +  L+      
Sbjct: 160 ------------------------------------LSYNYIQTITVNDLQFLRENPQVN 183

Query: 292 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-FTFLEFFDVSDNYLT 350
             L++  N +   I         L  L L  N  S  I +  ++    L    +      
Sbjct: 184 LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 351 GAIPLGKQFATFDNTSFDGNSGLCGRPLS 379
               L      F+ +  +G   +      
Sbjct: 243 DERNL----EIFEPSIMEGLCDVTIDEFR 267

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 9e-22
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 9/188 (4%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTVKNLVLSH 75
           L  L+LS N     +     L        L    +++L      S   +L  +  L +S+
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEE---LQHLDF-QHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRS 134
            N            +  L+ L + GN+F      + F   + L  +DLS    +      
Sbjct: 434 TNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
                +L+ L++ +N +     S    + +L+ L    N+                L   
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK--GILQHFPKSLAFF 550

Query: 195 DLSNNRFT 202
           +L+NN   
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 7e-21
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 2/163 (1%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            ++ L  L+  H+ L                  L + S  +   +       L ++  L 
Sbjct: 397 GLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDI-SYTNTKIDFDGIFLGLTSLNTLK 454

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
           ++ N+        +   +  L+ LDL            F    RL ++++SHN       
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
                   L  LD   N+I  +         +L    L +N  
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 19/148 (12%)

Query: 13  SMQYLNALNLSHNLLTSSN--------NLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 64
           S++ L  L++S+               +L            L +  N+     + +   N
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLN----------TLKMAGNSFKDNTLSNVFAN 471

Query: 65  LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
              +  L LS   L  +           L +L++  NN        + +   L  +D S 
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQIS 152
           N  +            L F +L NN ++
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 5e-28
 Identities = 64/343 (18%), Positives = 113/343 (32%), Gaps = 35/343 (10%)

Query: 18  NALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNN 77
            A+        +      P  +P    +L L   N +         +   ++ L L+ N 
Sbjct: 14  RAVLCHRKRFVAV-----PEGIPTETRLLDL-GKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 78  LSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN 137
           +S V P    N    L  L L+ N         F   S L  +D+S N     +     +
Sbjct: 68  VSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 138 CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLS 197
              L+ L++G+N +          + +L  L L       I            L ++ L 
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI--PTEALSHLHGLIVLRLR 184

Query: 198 NNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRM 257
           +      +   SF  L  +K++  S   YL D ++P      +L S              
Sbjct: 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLS------------ 230

Query: 258 MTYNKIPDI----------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS 307
           +T+  +  +          L  + LS N    +  + +  L  LQ + L    L    P 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 308 CLGNLTNLESLDLSNNRFSGQIPQQLVE-FTFLEFFDVSDNYL 349
               L  L  L++S N+ +  + + +      LE   +  N L
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 60/328 (18%), Positives = 106/328 (32%), Gaps = 60/328 (18%)

Query: 12  PSMQYLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTV 68
            S  +L  L L+ N++++           +      L L  +N L   IP  +   L+ +
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNL----RTLGL-RSNRLK-LIPLGVFTGLSNL 106

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
             L +S N +  +L     +    L  L++  N+        F   + L  + L      
Sbjct: 107 TKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
                +L +   L  L L +  I+         +  L VL +    +   +         
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYG 223

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248
             L  + +++   T  +P  +   L          LR+L                     
Sbjct: 224 LNLTSLSITHCNLT-AVPYLAVRHL--------VYLRFLN-------------------- 254

Query: 249 LIMNSKGRMMTYNKIPDI----------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDN 298
                    ++YN I  I          L  I L   +   V P +   L  L+VLN+  
Sbjct: 255 ---------LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 299 NNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           N L     S   ++ NLE+L L +N  +
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 46/284 (16%), Positives = 84/284 (29%), Gaps = 59/284 (20%)

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
                   V P+       E  +LDL  N       D F     L  ++L+ N+     P
Sbjct: 18  CHRKRFVAV-PE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
            +  N   L  L L +N++          + NL  L +  NK   +            L 
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLK 131

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
            +++ +N     +  ++F  L        + L  L                         
Sbjct: 132 SLEVGDNDLV-YISHRAFSGL--------NSLEQLT------------------------ 158

Query: 253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL 312
                              L       +   ++++L GL VL L + N+          L
Sbjct: 159 -------------------LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 313 TNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
             L+ L++S+  +   +    +    L    ++   LT A+P  
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (278), Expect = 2e-26
 Identities = 54/354 (15%), Positives = 123/354 (34%), Gaps = 27/354 (7%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
           + +L+LS N +T   +  G L       +L L  ++ +         +L ++++L LS N
Sbjct: 28  MKSLDLSFNKITYIGH--GDLRACANLQVLIL-KSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 77  NLSGVLPQCLGNFSDELSVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPR-S 134
           +LS +     G  S  L  L+L GN +    +   F   + L  + + +      I R  
Sbjct: 85  HLSSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
               + L  L++    + +     L +I +++ L L  ++   +          S +  +
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL--LEIFADILSSVRYL 201

Query: 195 DLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSK 254
           +L +     +         +    +     R        + ++   L    + S +    
Sbjct: 202 ELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 255 GRMMTYNKIPDILTGII---------------LSSNRFDRVIPTSIANLKGLQVLNLDNN 299
             +          + ++               +        + T  + L+ ++ + ++N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF---TFLEFFDVSDNYLT 350
            +     S   +L +LE LDLS N    +  +          L+   +S N+L 
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (258), Expect = 7e-24
 Identities = 70/390 (17%), Positives = 120/390 (30%), Gaps = 74/390 (18%)

Query: 17  LNALNLSHNLLTSSN--------NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTV 68
           L  L L  + + +          +L+           L L S+N L+    SW   L+++
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLE----------HLDL-SDNHLSSLSSSWFGPLSSL 100

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLF 127
           K L L  N    +    L      L  L +     F  I    F   + L  +++     
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK------------- 174
           +    +SL +   +  L L  ++ +     +   + ++  L LR                
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 175 -------------------FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDA 215
                              F  ++K  R     S++   D + N   G         +  
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSE 279

Query: 216 MKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--------- 266
           +  V T  +R L        Q       +  YSL+   K   +  +K+  +         
Sbjct: 280 LGKVETVTIRRLH-----IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 267 -LTGIILSSNRFDRVI---PTSIANLKGLQVLNLDNNNLQ--GHIPSCLGNLTNLESLDL 320
            L  + LS N                  LQ L L  N+L+        L  L NL SLD+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           S N F   +P        + F ++S   + 
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.9 bits (244), Expect = 4e-22
 Identities = 60/352 (17%), Positives = 106/352 (30%), Gaps = 55/352 (15%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG-------EIPSWICNL 65
            +  +  L L    L        P+              + LT        ++  +I  L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 66  NTVKNLVLSHNNLSGVLPQCLGNFSD-------ELSVLDLQGNNFFGTIPDTFIKESRLG 118
           + V+    + N L    P      S+        +  L +     F  +   +    ++ 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF---PSWLGTIPNLNVLILRSNKF 175
            I + ++           +   LEFLDL  N + + +    +  G  P+L  L+L  N  
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
             + K          L  +D+S N F     S               ++R+L        
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDS----------CQWPEKMRFL-------- 415

Query: 236 QVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLN 295
               +L ST    +             IP  L  + +S+N  D         L  LQ L 
Sbjct: 416 ----NLSSTGIRVV----------KTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELY 457

Query: 296 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
           +  N L+  +P        L  + +S N+            T L+   +  N
Sbjct: 458 ISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 6e-18
 Identities = 33/275 (12%), Positives = 70/275 (25%), Gaps = 56/275 (20%)

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
               + + +           +  LDL  N             + L V+ L  +       
Sbjct: 12  GRSRSFTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
            +  +   LE LDL +N +S    SW G + +L  L L  N +  +          + L 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQ 126

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
            + + N     ++    F           + L  L+                        
Sbjct: 127 TLRIGNVETFSEIRRIDFA--------GLTSLNELE------------------------ 154

Query: 253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL 312
                              + +         S+ +++ +  L L  +     +      L
Sbjct: 155 -------------------IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 313 TNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
           +++  L+L +   +      L              
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 46/329 (13%), Positives = 87/329 (26%), Gaps = 77/329 (23%)

Query: 8   WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE------TILYLVSNNSLTGEIPSW 61
                 +  +   + + N L   N  +  +     +        L++     L  ++ + 
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI-PQFYLFYDLSTV 305

Query: 62  ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFI---KESRLG 118
              L  VK + + ++ +  V      +    L  LDL  N                  L 
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 119 VIDLSHNLFQ--GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
            + LS N  +   +    L+    L  LD+  N      P        +  L L S    
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

Query: 177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236
            +       C    L ++D+SNN                       +L+ L         
Sbjct: 424 VV-----KTCIPQTLEVLDVSNNNLD-SFSL------------FLPRLQEL--------- 456

Query: 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNL 296
                                              +S N+   +     +    L V+ +
Sbjct: 457 ----------------------------------YISRNKLKTLPDA--SLFPVLLVMKI 480

Query: 297 DNNNLQGHIPSCLGNLTNLESLDLSNNRF 325
             N L+         LT+L+ + L  N +
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 17/202 (8%)

Query: 13  SMQYLNALNLSHNLLTS-SNNLQGPLPVPPPETILYLVSNNSLT--GEIPSWICNLNTVK 69
            ++ L  L+LS NL+              P    L L S N L    +    +  L  + 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL-SQNHLRSMQKTGEILLTLKNLT 390

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
           +L +S N    +   C       +  L+L        +         L V+D+S+N    
Sbjct: 391 SLDISRNTFHPMPDSCQWPEK--MRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLD- 444

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
                L     L+ L +  N++     + L   P L V+ +  N+   +        R +
Sbjct: 445 SFSLFLPR---LQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV--PDGIFDRLT 497

Query: 190 KLHIIDLSNNRFTGKLPSKSFL 211
            L  I L  N +    P   +L
Sbjct: 498 SLQKIWLHTNPWDCSCPRIDYL 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 55/227 (24%)

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195
           ++C      D  +   + + PS L     +  L L  NK   I          + L ++ 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYI--GHGDLRACANLQVLI 56

Query: 196 LSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255
           L ++R    +   +F  L          L +L                            
Sbjct: 57  LKSSRIN-TIEGDAFYSL--------GSLEHL---------------------------- 79

Query: 256 RMMTYNKIPDI----------LTGIILSSNRFDRV-IPTSIANLKGLQVLNLDNNNLQGH 304
             ++ N +  +          L  + L  N +  + + +   NL  LQ L + N      
Sbjct: 80  -DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 305 IP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           I       LT+L  L++          Q L     +    +  +   
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +   +  + LS N+   +    +     LQVL L ++ +         +L +LE LDLS+
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQF 359
           N  S          + L++ ++  N     + +   F
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLF 119

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (272), Expect = 2e-26
 Identities = 70/349 (20%), Positives = 126/349 (36%), Gaps = 63/349 (18%)

Query: 17  LNALNLSHNLLTSSNNLQGP--LPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLS 74
           +  L ++   + S   ++    L        L L + N +T   P  + NL  + NL + 
Sbjct: 46  ITKLVVAGEKVASIQGIEYLTNL------EYLNL-NGNQITDISP--LSNLVKLTNLYIG 96

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 134
            N ++ +    L N +  L  L L  +N   +        +++  ++L  N         
Sbjct: 97  TNKITDISA--LQNLT-NLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLS-DLSP 150

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
           L N + L +L +  +++ D  P  +  + +L  L L  N+   I          + LH  
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS----PLASLTSLHYF 204

Query: 195 DLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
               N+ T       +   + L +   KI + S L  L           + L        
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANL-----------SQLTWLE---- 249

Query: 250 IMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL 301
                   +  N+I DI        L  + + SN+   +    + NL  L  L L+NN L
Sbjct: 250 --------IGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQL 299

Query: 302 QGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
                  +G LTNL +L LS N  +   P  L   + ++  D ++  + 
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 8e-26
 Identities = 71/367 (19%), Positives = 136/367 (37%), Gaps = 59/367 (16%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC 63
            I +   D  +       L    +T     +    +    T L + +   +   I   I 
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVTQEELESI----TKLVV-AGEKVA-SIQG-IE 63

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
            L  ++ L L+ N ++ + P  L N   +L+ L +  N    T        + L  + L+
Sbjct: 64  YLTNLEYLNLNGNQITDISP--LSNLV-KLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR 183
            +      P  L N +K+  L+LG N    +  S L  +  LN L +  +K   +     
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT---- 171

Query: 184 TDCRFSKLHIIDLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVS 238
                + L+ + L+ N+         L S  +      +I + + +  +  +        
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRL-------- 223

Query: 239 TDLISTYDYSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKG 290
             L                +  NKI D+        LT + + +N+   +   ++ +L  
Sbjct: 224 NSLK---------------IGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTK 266

Query: 291 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           L++LN+ +N +     S L NL+ L SL L+NN+   +  + +   T L    +S N++T
Sbjct: 267 LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 351 GAIPLGK 357
              PL  
Sbjct: 325 DIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 9e-13
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 59/222 (26%)

Query: 144 LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTG 203
           L      I+  FP     +      +L+       + +  T      +  + ++  +   
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKAS----VTDVVTQEELESITKLVVAGEKVA- 57

Query: 204 KLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKI 263
            +    +L          + L YL                              +  N+I
Sbjct: 58  SIQGIEYL----------TNLEYLN-----------------------------LNGNQI 78

Query: 264 PDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL 315
            DI        LT + + +N+      +++ NL  L+ L L+ +N+     S L NLT +
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKM 134

Query: 316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
            SL+L  N         L   T L +  V+++ +    P+  
Sbjct: 135 YSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQG--PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKN 70
           +M  LN+L + +N +T  + L     L      T L +   N ++  I + + +L  +K 
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLANLSQL------TWLEI-GTNQISD-INA-VKDLTKLKM 269

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           L +  N +S +    L N S +L+ L L  N       +     + L  + LS N     
Sbjct: 270 LNVGSNQISDISV--LNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 131 IPRSLVNCSKLEFLDLGNNQIS 152
            P  L + SK++  D  N  I 
Sbjct: 327 RP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
              +       +++ P   A+L       L   ++   +      L ++  L ++  + +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 327 GQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
               Q +   T LE+ +++ N +T   PL  
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISPLSN 86

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 3e-26
 Identities = 57/358 (15%), Positives = 122/358 (34%), Gaps = 70/358 (19%)

Query: 9   LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWI-CNLN 66
             D ++     +   ++ +     L   L     +  +L L ++  +  EI ++     +
Sbjct: 39  FEDITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNL-NDLQIE-EIDTYAFAYAH 93

Query: 67  TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 126
           T++ L +  N +  + P    N    L+VL L+ N+        F    +L  + +S+N 
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 127 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDC 186
            +     +    + L+ L L +N+++      L  IP+L    +  N    +        
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIA--- 206

Query: 187 RFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYD 246
               +  +D S+N     +                 +L  L+                  
Sbjct: 207 ----VEELDASHNSIN-VVRGPVN-----------VELTILK------------------ 232

Query: 247 YSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDN 298
                      + +N + D         L  + LS N  ++++      ++ L+ L + N
Sbjct: 233 -----------LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 299 NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
           N L   +      +  L+ LDLS+N     + +   +F  LE   +  N +   + L 
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.0 bits (247), Expect = 7e-23
 Identities = 58/350 (16%), Positives = 106/350 (30%), Gaps = 63/350 (18%)

Query: 10  LDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWI-CNLNT 67
           +D ++QY       H  + + +   G   +      I+    N+++  ++P+ +  +   
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF-KNSTMR-KLPAALLDSFRQ 70

Query: 68  VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127
           V+ L L+   +  +           +  L +  N      P  F     L V+ L  N  
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCR 187
                    N  KL  L + NN +            +L  L L SN+   +         
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSL 184

Query: 188 FSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY 247
              L   ++S N  +               +     +  L                    
Sbjct: 185 IPSLFHANVSYNLLS--------------TLAIPIAVEELD------------------- 211

Query: 248 SLIMNSKGRMMTYNKIPDI-------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN 300
                      ++N I  +       LT + L  N         + N  GL  ++L  N 
Sbjct: 212 ----------ASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 259

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           L+  +      +  LE L +SNNR    +         L+  D+S N+L 
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 68/363 (18%), Positives = 112/363 (30%), Gaps = 81/363 (22%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWI-CNLNTVKNLVLS 74
           +  L +  N +     L   +    P  T+L L   N L+  +P  I  N   +  L +S
Sbjct: 95  IQKLYMGFNAIRY---LPPHVFQNVPLLTVLVL-ERNDLS-SLPRGIFHNTPKLTTLSMS 149

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 134
           +NNL  +        +  L  L L  N     +  + I    L   ++S+NL       +
Sbjct: 150 NNNLERIEDDTFQATT-SLQNLQLSSNR-LTHVDLSLIP--SLFHANVSYNLLS-----T 200

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
           L     +E LD  +N I+            L +L L+ N     + +      +  L  +
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LTDTAWLLNYPGLVEV 253

Query: 195 DLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSK 254
           DLS N    K+    F        V   +L  L                           
Sbjct: 254 DLSYNELE-KIMYHPF--------VKMQRLERLY-------------------------- 278

Query: 255 GRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314
                            +S+NR    +      +  L+VL+L +N+L  H+         
Sbjct: 279 -----------------ISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

Query: 315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLC 374
           LE+L L +N     +         L+   +S N       L   F      + D     C
Sbjct: 320 LENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHC 375

Query: 375 GRP 377
              
Sbjct: 376 KID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 57/323 (17%), Positives = 100/323 (30%), Gaps = 94/323 (29%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
           ++  L  L L  N L+S                   +              N   +  L 
Sbjct: 115 NVPLLTVLVLERNDLSS-------------------LPRGIFH--------NTPKLTTLS 147

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
           +S+NNL  +        +  L  L L  N     +  + I    L   ++S+NL      
Sbjct: 148 MSNNNLERIEDDTFQATT-SLQNLQLSSNR-LTHVDLSLIP--SLFHANVSYNLLS---- 199

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
            +L     +E LD  +N I+            L +L L+ N     + +      +  L 
Sbjct: 200 -TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LTDTAWLLNYPGLV 251

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
            +DLS N    K+    F        V   +L  L                         
Sbjct: 252 EVDLSYNELE-KIMYHPF--------VKMQRLERLY------------------------ 278

Query: 253 SKGRMMTYNKIPDI---------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG 303
                ++ N++  +         L  + LS N     +  +      L+ L LD+N++  
Sbjct: 279 -----ISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV- 331

Query: 304 HIPSCLGNLTNLESLDLSNNRFS 326
            +   L     L++L LS+N + 
Sbjct: 332 TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 38/250 (15%)

Query: 101 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 160
              +  I      +     + +             +  +  + +   N+ +     + L 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 161 TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
           +   + +L L   +   I  +         +  + +  N     LP   F         N
Sbjct: 67  SFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVF--------QN 115

Query: 221 TSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV 280
              L  L         +  + +S+    +  N+             LT + +S+N  +R+
Sbjct: 116 VPLLTVL--------VLERNDLSSLPRGIFHNTPK-----------LTTLSMSNNNLERI 156

Query: 281 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
              +      LQ L L +N L  H+   L  + +L   ++S N  S      L     +E
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVE 208

Query: 341 FFDVSDNYLT 350
             D S N + 
Sbjct: 209 ELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 16/165 (9%)

Query: 12  PSMQYLNALNLSHNLLTS-SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKN 70
                +  L+ SHN +      +   L      TIL L  +N+LT    +W+ N   +  
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVEL------TILKL-QHNNLTD--TAWLLNYPGLVE 252

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           + LS+N L  ++          L  L +  N     +         L V+DLSHN     
Sbjct: 253 VDLSYNELEKIMYHPFVKMQ-RLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
           + R+     +LE L L +N I  T    L T   L  L L  N +
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 351

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (269), Expect = 3e-26
 Identities = 63/298 (21%), Positives = 100/298 (33%), Gaps = 61/298 (20%)

Query: 44  TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF 103
            I  + +++SL   + S   +   VK L LS N LS +    L  F+ +L +L+L  N  
Sbjct: 13  KIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVL 70

Query: 104 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP 163
                      S L  +DL++N  Q      L+    +E L   NN IS           
Sbjct: 71  --YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQ 120

Query: 164 NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223
               + L +NK   +      +   S++  +DL  N     +              ++  
Sbjct: 121 GKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEID-TVNFAEL-------AASSDT 170

Query: 224 LRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--------LTGIILSSN 275
           L +L                              + YN I D+        L  + LSSN
Sbjct: 171 LEHLN-----------------------------LQYNFIYDVKGQVVFAKLKTLDLSSN 201

Query: 276 RFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333
           +    +     +  G+  ++L NN L   I   L    NLE  DL  N F     +  
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 57/252 (22%)

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
           I +     +R  +  ++ +  +  +     +   ++ LDL  N +S    + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
           +L L SN     + E       S L  +DL+NN                 +++    +  
Sbjct: 62  LLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ--------------ELLVGPSIET 103

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-------LTGIILSSNRFDR 279
           L                                 N I  +          I L++N+   
Sbjct: 104 LH-----------------------------AANNNISRVSCSRGQGKKNIYLANNKITM 134

Query: 280 VIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF 338
           +          +Q L+L  N +   +      +   LE L+L  N     +    V F  
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAK 192

Query: 339 LEFFDVSDNYLT 350
           L+  D+S N L 
Sbjct: 193 LKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 40/271 (14%), Positives = 85/271 (31%), Gaps = 64/271 (23%)

Query: 91  DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 150
           +   +  +  ++    +         +  +DLS N         L   +KLE L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 151 ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSF 210
           + +T    L ++  L  L L +N    +            +  +  +NN  + ++     
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQEL-------LVGPSIETLHAANNNIS-RVSCSRG 119

Query: 211 LCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI---- 266
                         + +                              +  NKI  +    
Sbjct: 120 -----------QGKKNIY-----------------------------LANNKITMLRDLD 139

Query: 267 ------LTGIILSSNRFDRV-IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 319
                 +  + L  N  D V      A+   L+ LNL  N +   +   +     L++LD
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLD 197

Query: 320 LSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           LS+N+ +  +  +      + +  + +N L 
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 17/193 (8%)

Query: 12  PSMQYLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVK 69
                +  L+ ++N ++    +  QG          +YL +NN +T          + V+
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQG-K------KNIYL-ANNKITMLRDLDEGCRSRVQ 147

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
            L L  N +  V    L   SD L  L+LQ N  +  +    +  ++L  +DLS N    
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA- 204

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
            +     + + + ++ L NN++       L    NL    LR N F+        D    
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSK 260

Query: 190 KLHIIDLSNNRFT 202
              +  ++     
Sbjct: 261 NQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 17  LNALNLSHNLLTS---------------SNNLQGPLPVPPPETILYLVSNNSLTGEIPSW 61
           L  LNLS N+L                 +NN    L V P    L+  +NN+++  +   
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHA-ANNNIS-RVSCS 117

Query: 62  ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFG-TIPDTFIKESRLGVI 120
                  KN+ L++N ++ +     G  S  +  LDL+ N        +       L  +
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
           +L +N     +    V  +KL+ LDL +N+++        +   +  + LR+NK   I  
Sbjct: 175 NLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI-- 229

Query: 181 EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD 229
             +       L   DL  N F        F     ++ V    ++ L  
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
                ++ +   + + +   +   ++ L+L  N L     + L   T LE L+LS+N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 327 GQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQ 358
                 L   + L   D+++NY+   + +G  
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 281 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
           I     N    ++  + +++L+  + S   +  N++ LDLS N  S      L  FT LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 341 FFDVSDNYLTGAIPLG 356
             ++S N L   + L 
Sbjct: 62  LLNLSSNVLYETLDLE 77

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 21/157 (13%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-----TILYLVSNNSLTGEI 58
            +    L  S   L  LNL +N +           V           L L S+N L   +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYD---------VKGQVVFAKLKTLDL-SSNKLA-FM 206

Query: 59  PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF-FGTIPDTFIKESRL 117
                +   V  + L +N L  ++ + L    + L   DL+GN F  GT+ D F K  R+
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 118 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
               ++    +    ++   C+       G     D 
Sbjct: 265 --QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (271), Expect = 1e-25
 Identities = 82/354 (23%), Positives = 139/354 (39%), Gaps = 63/354 (17%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
           L  +N S+N LT    L+    +      + + +NN +    P  + NL  +  L L +N
Sbjct: 70  LTQINFSNNQLTDITPLKNLTKL----VDILM-NNNQIADITP--LANLTNLTGLTLFNN 122

Query: 77  NLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 136
            ++ + P  L N +  L+ L+L  N    +        + L  +   + +      + L 
Sbjct: 123 QITDIDP--LKNLT-NLNRLELSSNTI--SDISALSGLTSLQQLSFGNQV---TDLKPLA 174

Query: 137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDL 196
           N + LE LD+ +N++SD   S L  + NL  LI  +N+   I          + L  + L
Sbjct: 175 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSL 228

Query: 197 SNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM 251
           + N+         L + + L L   +I N + L  L           T L          
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL-----------TKLTELK------ 271

Query: 252 NSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG 303
                 +  N+I +I        LT + L+ N+ + + P  I+NLK L  L L  NN+  
Sbjct: 272 ------LGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 304 HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
             P  + +LT L+ L   NN+ S      L   T + +     N ++   PL  
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 72/367 (19%), Positives = 133/367 (36%), Gaps = 63/367 (17%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC 63
            I +   D ++       L    +T + +      V    T L       +       + 
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQV----TTLQA-DRLGIK--SIDGVE 65

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
            LN +  +  S+N L+ + P  L N + +L  + +  N      P      + L  + L 
Sbjct: 66  YLNNLTQINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR 183
           +N      P  L N + L  L+L +N ISD   S L  + +L  L   +      + + +
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-----VTDLK 171

Query: 184 TDCRFSKLHIIDLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVS 238
                + L  +D+S+N+ +      KL +   L     +I + + L  L           
Sbjct: 172 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL----------- 220

Query: 239 TDLISTYDYSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKG 290
           T+L                +  N++ DI        LT + L++N+   + P  ++ L  
Sbjct: 221 TNLDELS------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK 266

Query: 291 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           L  L L  N +    P  L  LT L +L+L+ N+     P  +     L +  +  N ++
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 351 GAIPLGK 357
              P+  
Sbjct: 323 DISPVSS 329

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 72/346 (20%), Positives = 119/346 (34%), Gaps = 73/346 (21%)

Query: 22  LSHNLLTSSNNLQG--PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS 79
           L    +T    +           +    L    ++T  +     +L+ V  L      + 
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVL-GKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 80  GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 139
            +    +   ++ L+ ++   N      P      ++L  I +++N      P  L N +
Sbjct: 60  SIDG--VEYLNN-LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 140 KLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
            L  L L NNQI+D  P  L  + NLN L L SN     I +       + L  +   N 
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFGNQ 166

Query: 200 RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMT 259
                         D   + N + L  L                              ++
Sbjct: 167 V------------TDLKPLANLTTLERLD-----------------------------IS 185

Query: 260 YNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 311
            NK+ DI        L  +I ++N+   + P  +  L  L  L+L+ N L+      L +
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLAS 241

Query: 312 LTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
           LTNL  LDL+NN+ S   P  L   T L    +  N ++   PL  
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 285

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.9 bits (216), Expect = 1e-18
 Identities = 68/358 (18%), Positives = 122/358 (34%), Gaps = 83/358 (23%)

Query: 17  LNALNLSHNLLTS---------------SNNLQGPLPVPPPETILYL-VSNNSLTGEIPS 60
           LN L LS N ++                 N +    P+    T+  L +S+N ++    S
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--IS 193

Query: 61  WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120
            +  L  +++L+ ++N +S + P  LG  +  L  L L GN        T    + L  +
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQL--KDIGTLASLTNLTDL 248

Query: 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
           DL++N      P  L   +KL  L LG NQIS+  P  L  +  L  L L  N+   I  
Sbjct: 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS- 303

Query: 181 EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTD 240
                     L  + L  N  +   P           + + ++L+ L             
Sbjct: 304 ---PISNLKNLTYLTLYFNNISDISP-----------VSSLTKLQRLF------------ 337

Query: 241 LISTYDYSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQ 292
                               NK+ D+        +  +    N+   + P  +ANL  + 
Sbjct: 338 -----------------FYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 293 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
            L L++        +   N++   ++           P  + +       D++ N  +
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 52/321 (16%), Positives = 112/321 (34%), Gaps = 53/321 (16%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  L +L  ++N ++    L            L L + N L  +I + + +L  + +L 
Sbjct: 197 KLTNLESLIATNNQISDITPLGI----LTNLDELSL-NGNQLK-DIGT-LASLTNLTDLD 249

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
           L++N +S + P  L   + +L+ L L  N      P      + L  ++L+ N  +   P
Sbjct: 250 LANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
             + N   L +L L  N ISD  P  + ++  L  L   +NK    + +  +    + ++
Sbjct: 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK----VSDVSSLANLTNIN 356

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
            +   +N+ +   P           + N +++  L         ++    +    +   N
Sbjct: 357 WLSAGHNQISDLTP-----------LANLTRITQL--------GLNDQAWTNAPVNYKAN 397

Query: 253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL 312
                   N    +             + P +I++       ++  N             
Sbjct: 398 VSIPNTVKNVTGAL-------------IAPATISDGGSYTEPDITWNLPSY-TNEVSYTF 443

Query: 313 TNLESLDLSNNRFSGQIPQQL 333
           +   ++      FSG + Q L
Sbjct: 444 SQPVTIGKGTTTFSGTVTQPL 464

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (271), Expect = 1e-25
 Identities = 58/357 (16%), Positives = 117/357 (32%), Gaps = 43/357 (12%)

Query: 10  LDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWI-CNLNT 67
           +D ++QY       H  + + +   G   +      I+    N+++  ++P+ +  +   
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF-KNSTMR-KLPAALLDSFRQ 76

Query: 68  VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127
           V+ L L+   +  +           +  L +  N      P  F     L V+ L  N  
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCR 187
                    N  KL  L + NN +            +L  L L SN+   +         
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSL 190

Query: 188 FSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY 247
              L   ++S N  +               +     +  L          S + I+    
Sbjct: 191 IPSLFHANVSYNLLS--------------TLAIPIAVEEL--------DASHNSINVVRG 228

Query: 248 SLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
            + +      + +N + D         L  + LS N  ++++      ++ L+ L + NN
Sbjct: 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
            L   +      +  L+ LDLS+N     + +   +F  LE   +  N +   + L 
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.2 bits (247), Expect = 2e-22
 Identities = 59/336 (17%), Positives = 111/336 (33%), Gaps = 31/336 (9%)

Query: 21  NLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI--CNLNTVKNLVLSHNNL 78
              +N+       +        + + Y V  +  T ++        LN  K +   ++ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 79  SGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 138
             +    L +F  ++ +L+L            F     +  + +  N  +   P    N 
Sbjct: 64  RKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122

Query: 139 SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN 198
             L  L L  N +S          P L  L + +N    I  E  T    + L  + LS+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSS 180

Query: 199 NRFT----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSK 254
           NR T      +PS     +    +   +    ++++       S + I+     + +   
Sbjct: 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL-----DASHNSINVVRGPVNVE-- 233

Query: 255 GRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314
                       LT + L  N         + N  GL  ++L  N L+  +      +  
Sbjct: 234 ------------LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           LE L +SNNR    +         L+  D+S N+L 
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 9e-14
 Identities = 54/303 (17%), Positives = 99/303 (32%), Gaps = 36/303 (11%)

Query: 12  PSMQYLNALNLSHNLLTS-SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKN 70
                +  L+ SHN +      +   L      TIL L  +N+LT    +W+ N   +  
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVNVEL------TILKL-QHNNLTD--TAWLLNYPGLVE 258

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
           + LS+N L  ++          L  L +  N     +         L V+DLSHN     
Sbjct: 259 VDLSYNELEKIMYHPFVKMQ-RLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-H 315

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCR--- 187
           + R+     +LE L L +N I  T    L T   L  L L  N +         +     
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW-------DCNSLRAL 365

Query: 188 ---FSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDV-------ISPYGQV 237
               ++  + D   +            C ++ K      L+Y+           +     
Sbjct: 366 FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425

Query: 238 STDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297
           +TD I++        ++   +       +   +        ++    I   + LQ L+ +
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485

Query: 298 NNN 300
            + 
Sbjct: 486 IDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 53/319 (16%), Positives = 96/319 (30%), Gaps = 82/319 (25%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTVKNLVLSH 75
           L  L++S+N L     ++            L L S+N LT    S I +L    +  +S+
Sbjct: 149 LTTLSMSNNNLER---IEDDTFQATTSLQNLQL-SSNRLTHVDLSLIPSL---FHANVSY 201

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 135
           N LS +           +  LD   N+              L ++ L HN         L
Sbjct: 202 NLLSTL------AIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTD--TAWL 250

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195
           +N   L  +DL  N++          +  L  L + +N+   ++           L ++D
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR---LVALNLYGQPIPTLKVLD 307

Query: 196 LSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255
           LS+N     +                 +L  L                            
Sbjct: 308 LSHNHLL-HVERNQP---------QFDRLENLY--------------------------- 330

Query: 256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TN 314
             + +N I  +                  ++    L+ L L +N+      + L  L  N
Sbjct: 331 --LDHNSIVTL-----------------KLSTHHTLKNLTLSHNDWD---CNSLRALFRN 368

Query: 315 LESLDLSNNRFSGQIPQQL 333
           +    + +     +I  QL
Sbjct: 369 VARPAVDDADQHCKIDYQL 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (266), Expect = 4e-25
 Identities = 52/289 (17%), Positives = 99/289 (34%), Gaps = 48/289 (16%)

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
           N N  K   ++ ++L   L     +  + +  LDL GN             ++L +++LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR 183
            N+        L + S L  LDL NN + +     L   P++  L   +N    +     
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS-- 117

Query: 184 TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS--QLRYLQDVISPYGQVSTDL 241
              R      I L+NN+ T  L      C   ++ ++    ++  +      + +++   
Sbjct: 118 ---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV-----NFAELAASS 168

Query: 242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL 301
            +                       L  + L  N     +   +     L+ L+L +N L
Sbjct: 169 DT-----------------------LEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKL 203

Query: 302 QGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
              +     +   +  + L NN+    I + L     LE FD+  N   
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (259), Expect = 4e-24
 Identities = 63/298 (21%), Positives = 100/298 (33%), Gaps = 61/298 (20%)

Query: 44  TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF 103
            I  + +++SL   + S   +   VK L LS N LS +    L  F+ +L +L+L  N  
Sbjct: 13  KIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVL 70

Query: 104 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP 163
                      S L  +DL++N  Q      L+    +E L   NN IS           
Sbjct: 71  --YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQ 120

Query: 164 NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223
               + L +NK   +      +   S++  +DL  N     +              ++  
Sbjct: 121 GKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEID-TVNFAEL-------AASSDT 170

Query: 224 LRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--------LTGIILSSN 275
           L +L                              + YN I D+        L  + LSSN
Sbjct: 171 LEHLN-----------------------------LQYNFIYDVKGQVVFAKLKTLDLSSN 201

Query: 276 RFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333
           +    +     +  G+  ++L NN L   I   L    NLE  DL  N F     +  
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.5 bits (240), Expect = 1e-21
 Identities = 50/316 (15%), Positives = 99/316 (31%), Gaps = 21/316 (6%)

Query: 12  PSMQYLNALNLSHNLLT--SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVK 69
                +  L+ ++N ++  S +  QG          +YL +NN +T          + V+
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQG-K------KNIYL-ANNKITMLRDLDEGCRSRVQ 147

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
            L L  N +  V    L   SD L  L+LQ N  +          ++L  +DLS N    
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLA- 204

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
            +     + + + ++ L NN++       L    NL    LR N F+        D    
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSK 260

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ--VSTDLISTYDY 247
              +  ++       L  ++        + +       +D+ +P+    ++         
Sbjct: 261 NQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAY-CCEDLPAPFADRLIALKRKEHALL 318

Query: 248 SLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS 307
           S   +   R+    +       I     ++  VI       +    L      L   + +
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 308 CLGNLTNLESLDLSNN 323
                  L+       
Sbjct: 379 GRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 55/334 (16%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 17  LNALNLSHNLLT----------------SSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
           L  LNLS N+L                 ++N +Q  L V P    L+  +NN+++    S
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LLVGPSIETLHA-ANNNISRVSCS 117

Query: 61  WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKE-SRLGV 119
                   KN+ L++N ++ +     G  S  +  LDL+ N                L  
Sbjct: 118 RGQGK---KNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           ++L +N     +    V  +KL+ LDL +N+++        +   +  + LR+NK   I 
Sbjct: 174 LNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI- 229

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
              +       L   DL  N F        F     ++ V    ++ L            
Sbjct: 230 --EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT-VP 286

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
            L     Y               +      ++         +     N    + ++    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333
             +  I           +L+        Q+    
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 7e-20
 Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 57/252 (22%)

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
           I +     +R  +  ++ +  +  +     +   ++ LDL  N +S    + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
           +L L SN     + E       S L  +DL+NN                 +++    +  
Sbjct: 62  LLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ--------------ELLVGPSIET 103

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-------LTGIILSSNRFDR 279
           L                                 N I  +          I L++N+   
Sbjct: 104 LH-----------------------------AANNNISRVSCSRGQGKKNIYLANNKITM 134

Query: 280 VIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF 338
           +          +Q L+L  N +   +      +   LE L+L  N     +  Q+V F  
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAK 192

Query: 339 LEFFDVSDNYLT 350
           L+  D+S N L 
Sbjct: 193 LKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 14/222 (6%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC 63
            +    L  S   L  LNL +N +     ++G +     +T L L S+N L   +     
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKT-LDL-SSNKLA-FMGPEFQ 211

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF-FGTIPDTFIKESRLGVIDL 122
           +   V  + L +N L  ++ + L      L   DL+GN F  GT+ D F K  R+    +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRV--QTV 267

Query: 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYG--IIK 180
           +    +    ++   C+       G     D    +   +  L           G    +
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327

Query: 181 EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS 222
                   ++   ID    ++   +  +  L   A   +   
Sbjct: 328 LECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQK 368

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 281 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
           I     N    ++  + +++L+  + S   +  N++ LDLS N  S      L  FT LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 341 FFDVSDNYLTGAIPLGK 357
             ++S N L   + L  
Sbjct: 62  LLNLSSNVLYETLDLES 78

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 24/211 (11%), Positives = 57/211 (27%), Gaps = 4/211 (1%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
             Q L   +L  N       L+           +   +   LTG+               
Sbjct: 235 FSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
               +L       L     +   L     +    +      ++R   ID     ++  I 
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
           +  +       L+     + +   +       L+  + ++    G I+        S L 
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV---GQIELQHATEEQSPLQ 410

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223
           ++     R+      +  +  +A++  +  Q
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 9e-25
 Identities = 47/341 (13%), Positives = 87/341 (25%), Gaps = 92/341 (26%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLTG 56
                L D +     AL L    L             P +         + +     L  
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ---F-------PDQAFRLSHLQHMTI-DAAGLM- 117

Query: 57  EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESR 116
           E+P  +     ++ L L+ N L   LP  + + +  L  L ++       +P+       
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELSIRACPELTELPE------- 168

Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
                    L              L+ L L    I  + P+ +  + NL  L +R++   
Sbjct: 169 --------PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236
            +           KL  +DL         P               + L+ L         
Sbjct: 220 AL---GPAIHHLPKLEELDLRGCTALRNYPP---------IFGGRAPLKRL--------- 258

Query: 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNL 296
               L                   + +                 +P  I  L  L+ L+L
Sbjct: 259 ---ILKD----------------CSNL---------------LTLPLDIHRLTQLEKLDL 284

Query: 297 DNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFT 337
                   +PS +  L     + +  +  +     + V   
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 6e-24
 Identities = 40/322 (12%), Positives = 87/322 (27%), Gaps = 53/322 (16%)

Query: 44  TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF 103
             LY   + +L       +       N   +  + +          S+   +    G   
Sbjct: 15  ENLYFQGSTALR-PYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRAL 68

Query: 104 FGTIPDTF--IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
                D      +     ++L       + P      S L+ + +    +    P  +  
Sbjct: 69  -KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
              L  L L  N    +   P +    ++L  + +       +LP        + +    
Sbjct: 126 FAGLETLTLARNPLRAL---PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI---------LTGIIL 272
             L+ L+                             + +  I  +         L  + +
Sbjct: 183 VNLQSLR-----------------------------LEWTGIRSLPASIANLQNLKSLKI 213

Query: 273 SSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ 332
            ++     +  +I +L  L+ L+L       + P   G    L+ L L +      +P  
Sbjct: 214 RNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 333 LVEFTFLEFFDVSDNYLTGAIP 354
           +   T LE  D+        +P
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 1e-23
 Identities = 49/304 (16%), Positives = 85/304 (27%), Gaps = 46/304 (15%)

Query: 57  EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE-LSVLDLQGNNFFGTIPDTFIKES 115
                  N N  +    +   L       L + +      L+L+        PD   + S
Sbjct: 47  HSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLS 104

Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN-- 173
            L  + +        +P ++   + LE L L  N +    P+ + ++  L  L +R+   
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 174 -----KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKI--VNTSQLRY 226
                +                L  + L        LP+ S   L  +K   +  S L  
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA 220

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA 286
           L   I         L                         L  + L      R  P    
Sbjct: 221 LGPAIH-------HLPK-----------------------LEELDLRGCTALRNYPPIFG 250

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
               L+ L L + +    +P  +  LT LE LDL       ++P  + +        V  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 347 NYLT 350
           +   
Sbjct: 311 HLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 20/168 (11%)

Query: 3   GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLT 55
                      +  L +L L    + S           P           L +  N+ L+
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRS----------LPASIANLQNLKSLKI-RNSPLS 219

Query: 56  GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKES 115
             +   I +L  ++ L L         P   G  +  L  L L+  +   T+P    + +
Sbjct: 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLT 277

Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP 163
           +L  +DL   +   R+P  +        + +  +  +          P
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 43/269 (15%), Positives = 70/269 (26%), Gaps = 74/269 (27%)

Query: 93  LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 152
              L  QG+       D   +  R    D +             N +  +        + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK 69

Query: 153 DTFPSWLG--TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSF 210
                 L   T P    L LRS         P    R S L  + +       +LP    
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLPQF---PDQAFRLSHLQHMTIDAAGLM-ELPD--- 121

Query: 211 LCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI 270
                  +   + L  L                                           
Sbjct: 122 ------TMQQFAGLETL------------------------------------------- 132

Query: 271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN---------LTNLESLDLS 321
            L+ N   R +P SIA+L  L+ L++        +P  L +         L NL+SL L 
Sbjct: 133 TLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 322 NNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
                  +P  +     L+   + ++ L+
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (265), Expect = 1e-24
 Identities = 56/354 (15%), Positives = 99/354 (27%), Gaps = 67/354 (18%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPE------TILYLVSNNSLTGEIPSWICNLN 66
            +  L    L      +  NL+                   L   +    +I      L 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 67  TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 126
            V +  L    +  V           L +++ +   F        +K   L  +  + N 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSN- 335

Query: 127 FQGRIPRSLVNCSKLEFLDLGNNQIS--DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT 184
            +G    S V+   LEFLDL  N +S             +L  L L  N    +      
Sbjct: 336 -KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSN 391

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244
                +L  +D  ++          FL L          L YL                 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSL--------RNLIYLD---------------- 427

Query: 245 YDYSLIMNSKGRMMTYNKIPDILTGII----------LSSNRFDRVIPTSI-ANLKGLQV 293
                        +++        GI           ++ N F       I   L+ L  
Sbjct: 428 -------------ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 294 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
           L+L    L+   P+   +L++L+ L++++N+            T L+   +  N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (257), Expect = 1e-23
 Identities = 69/382 (18%), Positives = 123/382 (32%), Gaps = 54/382 (14%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-------VSNNSLTGEIPSWICNL 65
           S   L  L+LS   + +                  L       ++ N +          L
Sbjct: 50  SFPELQVLDLSRCEIQTI----------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 66  NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNF-FGTIPDTFIKESRLGVIDLSH 124
           ++++ LV    NL+ +    +G+    L  L++  N      +P+ F   + L  +DLS 
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 125 NLFQGRIPRSLVNCSKLEF----LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
           N  Q      L    ++      LDL  N ++            L+ L LR+N    +  
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD-SLNV 216

Query: 181 EPRTDCRFSKLHIIDLSNNRFTG--KLPSKSFLCLDAMKIVNTSQLR--YLQDVISPYGQ 236
                   + L +  L    F     L       L+ +  +   + R  YL   +     
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 237 VSTDLISTYDYSLIMNSKGRM----------------MTYNKIPDI----LTGIILSSNR 276
           +   L +   +SL+  +  R+                  + + P +    L  +  +SN+
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 277 FDRVIPTSIANLKGLQVLNLDNNNLQ--GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLV 334
                  S  +L  L+ L+L  N L   G         T+L+ LDLS N     +    +
Sbjct: 337 GGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 335 EFTFLEFFDVSDNYLTGAIPLG 356
               LE  D   + L       
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFS 415

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 6e-23
 Identities = 53/310 (17%), Positives = 106/310 (34%), Gaps = 18/310 (5%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
              +   +IP  +    + KNL LS N L  +      +F  EL VLDL           
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDG 70

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
            +   S L  + L+ N  Q     +    S L+ L      ++      +G +  L  L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS------Q 223
           +  N      K P      + L  +DLS+N+    +       L  M ++N S       
Sbjct: 131 VAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 224 LRYLQDVISPYGQVST-DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIP 282
           + ++Q       ++    L + +D   +M +  + +   ++  ++ G   +    ++   
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 283 TSIANLKGLQVLNLDNNNLQG---HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL 339
           +++  L  L +       L      I      LTN+ S  L +     ++          
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK-DFSYNFGW 306

Query: 340 EFFDVSDNYL 349
           +  ++ +   
Sbjct: 307 QHLELVNCKF 316

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 68/364 (18%), Positives = 122/364 (33%), Gaps = 37/364 (10%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
              L+LS N L    +        P   +L L S   +         +L+ +  L+L+ N
Sbjct: 30  TKNLDLSFNPLRHLGS--YSFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 77  NLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSL 135
            +  +        S  L  L     N              L  ++++HNL Q  ++P   
Sbjct: 87  PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV----LILRSNKFYGIIKEPRTDCRFSKL 191
            N + LE LDL +N+I   + + L  +  + +    L L  N    I        +  +L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI---QPGAFKEIRL 202

Query: 192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY-----LQDVISPYGQVSTDLISTY- 245
           H + L NN  +  +       L  +++       +     L+       +   +L     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI-ANLKGLQVLNLDNNNLQGH 304
             + +      ++        ++   L S   +RV   S     + L+++N         
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 305 IPSCL----------------GNLTNLESLDLSNNR--FSGQIPQQLVEFTFLEFFDVSD 346
               L                 +L +LE LDLS N   F G   Q     T L++ D+S 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 347 NYLT 350
           N + 
Sbjct: 383 NGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 5e-22
 Identities = 45/200 (22%), Positives = 72/200 (36%), Gaps = 5/200 (2%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  L  L+LS N L+                 L L S N +   + S    L  +++L 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVI-TMSSNFLGLEQLEHLD 402

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
             H+NL  +    +      L  LD+   +        F   S L V+ ++ N FQ    
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 133 R-SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL 191
                    L FLDL   Q+    P+   ++ +L VL + SN+   +        R + L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSL 520

Query: 192 HIIDLSNNRFTGKLPSKSFL 211
             I L  N +    P   +L
Sbjct: 521 QKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 57/319 (17%), Positives = 111/319 (34%), Gaps = 43/319 (13%)

Query: 12  PSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNL 71
             +  L         L    +    L         + + + ++   +  +  N    ++L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGW-QHL 309

Query: 72  VLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL--FQG 129
            L +          L +    L  L    N   G    + +    L  +DLS N   F+G
Sbjct: 310 ELVNCKFGQFPTLKLKS----LKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
              +S    + L++LDL  N +  T  S    +  L  L  + +    +  E        
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLR 421

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY--LQDVISPYGQVSTDLISTYDY 247
            L  +D+S+        +  F  L +++++    +     Q+   P   + T+L +    
Sbjct: 422 NLIYLDISHTHTRV-AFNGIFNGLSSLEVLK---MAGNSFQENFLPD--IFTELRN---- 471

Query: 248 SLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS 307
                              LT + LS  + +++ PT+  +L  LQVLN+ +N L+     
Sbjct: 472 -------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 308 CLGNLTNLESLDLSNNRFS 326
               LT+L+ + L  N + 
Sbjct: 513 IFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 61/371 (16%), Positives = 114/371 (30%), Gaps = 67/371 (18%)

Query: 13  SMQYLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKN 70
           ++  L  L+LS N + S    +L+    +P     L L S N +   I         +  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL-SLNPMN-FIQPGAFKEIRLHK 204

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG--------VIDL 122
           L L +N  S  + +        L V  L    F          +S L            L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 123 SH-NLFQGRIPRSLVNCSKLEFLDLGNNQIS----DTFPSWLGTI--------------- 162
           ++ + +   I       + +    L +  I      ++      +               
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK-LPSKSFLCLDAMKIVNT 221
            +L  L   SNK         ++     L  +DLS N  + K   S+S     ++K ++ 
Sbjct: 325 KSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
           S                  +I+     L +               L  +    +   ++ 
Sbjct: 381 S---------------FNGVITMSSNFLGLEQ-------------LEHLDFQHSNLKQMS 412

Query: 282 PTSI-ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ-LVEFTFL 339
             S+  +L+ L  L++ + + +         L++LE L ++ N F          E   L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 340 EFFDVSDNYLT 350
            F D+S   L 
Sbjct: 473 TFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           L  + LS      +   +  +L  L  L L  N +Q         L++L+ L       +
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 327 GQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
                 +     L+  +V+ N +  +  L + F+   N
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +P     + LS N    +   S  +   LQVL+L    +Q        +L++L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           N             + L+     +  L 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA 113

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 1e-23
 Identities = 65/342 (19%), Positives = 120/342 (35%), Gaps = 94/342 (27%)

Query: 17  LNALNLSHNLLTSSNNLQGPLP--VPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLS 74
              LN+  + LT+       LP  +P   T L +  +N+LT  +P+    L   + L +S
Sbjct: 42  NAVLNVGESGLTT-------LPDCLPAHITTLVI-PDNNLT-SLPALPPEL---RTLEVS 89

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 134
            N L+  LP        ELS+      +    +P        L  + +  N     +P  
Sbjct: 90  GNQLT-SLPVLPPGLL-ELSIFSNPLTH-LPALPSG------LCKLWIFGNQLT-SLPVL 139

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
                 L+ L + +NQ++ + P+       L  L   +N+   +   P      S L  +
Sbjct: 140 PPG---LQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLTSLPMLP------SGLQEL 186

Query: 195 DLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSK 254
            +S+N+    LP+              S+L  L                           
Sbjct: 187 SVSDNQLA-SLPT------------LPSELYKLW-------------------------- 207

Query: 255 GRMMTYNKIPDI------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSC 308
                 N++  +      L  +I+S NR    +P   +    L+ L +  N L   +P  
Sbjct: 208 ---AYNNRLTSLPALPSGLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLT-SLPML 259

Query: 309 LGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
              L    SL +  N+ + ++P+ L+  +     ++  N L+
Sbjct: 260 PSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 4e-21
 Identities = 69/334 (20%), Positives = 113/334 (33%), Gaps = 95/334 (28%)

Query: 10  LDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVK 69
           L      L  L +S N LTS       LPV PP  +   + +N LT  +P+    L    
Sbjct: 76  LPALPPELRTLEVSGNQLTS-------LPVLPPGLLELSIFSNPLT-HLPALPSGL---C 124

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
            L +  N L+  LP         L  L +  +N   ++P    +  +L      +N    
Sbjct: 125 KLWIFGNQLT-SLPVLPPG----LQELSV-SDNQLASLPALPSELCKL---WAYNNQLT- 174

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
            +P      S L+ L + +NQ++ + P+       L  L   +N+   +   P      S
Sbjct: 175 SLPMLP---SGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTSLPALP------S 221

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
            L  + +S NR T  LP               S+L+ L                      
Sbjct: 222 GLKELIVSGNRLTS-LPV------------LPSELKELM--------------------- 247

Query: 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 309
                                 +S NR    +P   +    L  L++  N L   +P  L
Sbjct: 248 ----------------------VSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESL 280

Query: 310 GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD 343
            +L++  +++L  N  S +  Q L E T    + 
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 3e-18
 Identities = 52/308 (16%), Positives = 90/308 (29%), Gaps = 88/308 (28%)

Query: 62  ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121
            C  N    L +  + L+  LP CL      ++ L +  NN   ++P        L  ++
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNL-TSLPALP---PELRTLE 87

Query: 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKE 181
           +S N     +P       +L         +             L  L +  N+   +   
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPVL 139

Query: 182 PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL 241
           P        L  + +S+N+    LP+              S+L  L              
Sbjct: 140 P------PGLQELSVSDNQLA-SLPA------------LPSELCKLW------------- 167

Query: 242 ISTYDYSLIMNSKGRMMTYNKIPDI------LTGIILSSNRFDRVIPTSIANLKGLQVLN 295
                              N++  +      L  + +S N+    +PT  + L  L   N
Sbjct: 168 ----------------AYNNQLTSLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYN 210

Query: 296 LDNNNLQGHIPS-----CLGN--------LTNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342
               +L             GN         + L+ L +S NR +  +P      + L   
Sbjct: 211 NRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLP---SGLLSL 266

Query: 343 DVSDNYLT 350
            V  N LT
Sbjct: 267 SVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 49/208 (23%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 10  LDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTV 68
           L      L  L++S N L S       LP  P E   L+   NN LT  +P+    L   
Sbjct: 176 LPMLPSGLQELSVSDNQLAS-------LPTLPSELYKLWA-YNNRLT-SLPALPSGL--- 223

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
           K L++S N L+  LP         L  L +   N   ++P      S L  + +  N   
Sbjct: 224 KELIVSGNRLTS-LPVLPSE----LKELMV-SGNRLTSLPMLP---SGLLSLSVYRNQLT 274

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
            R+P SL++ S    ++L  N +S+     L  I +         +F         + R 
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 189 SKLHIID-LSNNRFTGKLPSKSFLCLDA 215
             L   D L   R     P+  +     
Sbjct: 334 LHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 20/94 (21%)

Query: 275 NRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN------------------LTNLE 316
            R   V         G  VLN+  + L   +P CL                       L 
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELR 84

Query: 317 SLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           +L++S N+ +  +P        L  F     +L 
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.5 bits (246), Expect = 3e-23
 Identities = 63/303 (20%), Positives = 99/303 (32%), Gaps = 61/303 (20%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87
           +S  L   P  +P   T L L  +N L          L  +  L LS N LS     C  
Sbjct: 15  NSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQ 72

Query: 88  NFSD--ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKLEFL 144
           +      L  LDL  N    T+   F+   +L  +D  H+  +     S+ ++   L +L
Sbjct: 73  SDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 145 DLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK 204
           D+ +      F      + +L VL +  N F      P        L  +DLS  +   +
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLE-Q 189

Query: 205 LPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP 264
           L   +F  L        S L+ L                                     
Sbjct: 190 LSPTAFNSL--------SSLQVL------------------------------------- 204

Query: 265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TNLESLDLSNN 323
                  +S N F  +       L  LQVL+   N++       L +  ++L  L+L+ N
Sbjct: 205 ------NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 324 RFS 326
            F+
Sbjct: 259 DFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 57/303 (18%), Positives = 102/303 (33%), Gaps = 64/303 (21%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN--FFGTI 107
           ++  LT  +P+ I   ++   L L  N L  +        + +L+ L L  N   F G  
Sbjct: 15  NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCC 70

Query: 108 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLN 166
             +    + L  +DLS N     +  + +   +LE LD  ++ +      S   ++ NL 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
            L +                  S L ++ ++ N F        F  L          L +
Sbjct: 130 YLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL--------RNLTF 179

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA 286
           L                                            LS  + +++ PT+  
Sbjct: 180 L-------------------------------------------DLSQCQLEQLSPTAFN 196

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE--FTFLEFFDV 344
           +L  LQVLN+ +NN           L +L+ LD S N       +Q ++   + L F ++
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

Query: 345 SDN 347
           + N
Sbjct: 256 TQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 10/201 (4%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  L  L+LS N L+                 L L S N +   + S    L  +++L 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVI-TMSSNFLGLEQLEHLD 107

Query: 73  LSHNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
             H+NL  +       F     L  LD+   +        F   S L V+ ++ N FQ  
Sbjct: 108 FQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 131 IPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
                      L FLDL   Q+    P+   ++ +L VL +  N F+ +  +       +
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLN 223

Query: 190 KLHIIDLSNNRFTGKLPSKSF 210
            L ++D S N        +  
Sbjct: 224 SLQVLDYSLNHIM-TSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIP--SWICNLNTVKNLVLS 74
           L  L+LS N + + ++    L        L    +++L  ++   S   +L  +  L +S
Sbjct: 80  LKYLDLSFNGVITMSSNFLGL---EQLEHLDF-QHSNLK-QMSEFSVFLSLRNLIYLDIS 134

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-PDTFIKESRLGVIDLSHNLFQGRIPR 133
           H +            S  L VL + GN+F     PD F +   L  +DLS    +   P 
Sbjct: 135 HTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
           +  + S L+ L++ +N            + +L VL    N      K+       S L  
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLAF 252

Query: 194 IDLSNNRF 201
           ++L+ N F
Sbjct: 253 LNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 43/218 (19%), Positives = 70/218 (32%), Gaps = 43/218 (19%)

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
              L+L +N++          +  L  L L SN         ++D   + L  +DLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQ------DVISPYGQVSTDLISTYDYSLIMNSK 254
               + S +FL L         QL +L         +S +  V   L +           
Sbjct: 90  VI-TMSS-NFLGL--------EQLEHLDFQHSNLKQMSEFS-VFLSLRN----------- 127

Query: 255 GRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLT 313
                       L  + +S              L  L+VL +  N+ Q +        L 
Sbjct: 128 ------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 314 NLESLDLSNNRFSGQIPQQ-LVEFTFLEFFDVSDNYLT 350
           NL  LDLS  +   Q+        + L+  ++S N   
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ-GHIPS-CLGNLTNLESLDL 320
           IP   T + L SN+   +       L  L  L+L +N L      S      T+L+ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
           S N     +    +    LE  D   + L       
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 17  LNALNLSHNLLTSSN--------NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTV 68
           L  L++SH     +         +L+          +L +  N+     +P     L  +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLE----------VLKMAGNSFQENFLPDIFTELRNL 177

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
             L LS   L   L     N    L VL++  NNFF      +   + L V+D S N   
Sbjct: 178 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 129 GRIPRSLVN--CSKLEFLDLGNNQIS 152
               +  +    S L FL+L  N  +
Sbjct: 237 -TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ--I 329
            +S     V PT I        L L++N LQ         LT L  L LS+N  S +   
Sbjct: 14  CNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 330 PQQLVEFTFLEFFDVSDNYLT 350
            Q     T L++ D+S N + 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI 91

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 7e-22
 Identities = 59/291 (20%), Positives = 94/291 (32%), Gaps = 53/291 (18%)

Query: 66  NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 125
           N    +V +   LS V PQ           L+L  NN      DTF     L V+ L  N
Sbjct: 54  NQFSKVVCTRRGLSEV-PQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 126 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD 185
             +     +    + L  L+L +N ++         +  L  L LR+N    I       
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAF 167

Query: 186 CRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
            R   L  +DL   +    +   +F  L          L+YL                  
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGL--------FNLKYLN----------------- 202

Query: 246 DYSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297
                       +    I D+        L  + +S N F  + P S   L  L+ L + 
Sbjct: 203 ------------LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-FTFLEFFDVSDN 347
           N+ +     +    L +L  L+L++N  S  +P  L     +L    +  N
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 6e-20
 Identities = 55/298 (18%), Positives = 92/298 (30%), Gaps = 62/298 (20%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87
           +   L   P  +P     L L   N++         +L+ ++ L L  N++  +      
Sbjct: 62  TRRGLSEVPQGIPSNTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 88  NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDL 146
             +  L+ L+L  N         F   S+L  + L +N  +  IP  +      L  LDL
Sbjct: 121 GLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 147 GN-NQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL 205
           G   ++          + NL  L L        IK+         L  +++S N F  ++
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEMSGNHFP-EI 233

Query: 206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPD 265
              SF  L        S L+ L                                      
Sbjct: 234 RPGSFHGL--------SSLKKLW------------------------------------- 248

Query: 266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
                 + +++   +   +   L  L  LNL +NNL          L  L  L L +N
Sbjct: 249 ------VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 28/218 (12%)

Query: 13  SMQYLNALNLSHNLLTS--------SNNLQGPLPVPPPETILYLVSNNSLTGEIPS-WIC 63
            + +L  L L  N +            +L            L L  +N LT  IPS    
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLN----------TLEL-FDNWLT-VIPSGAFE 144

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDL 122
            L+ ++ L L +N +  +           L  LDL        I    F     L  ++L
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEP 182
                +  +P +L     LE L++  N   +  P     + +L  L + +++   I  E 
Sbjct: 204 GMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--ER 259

Query: 183 RTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
                 + L  ++L++N  +  LP   F  L  +  ++
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 41/237 (17%), Positives = 73/237 (30%), Gaps = 60/237 (25%)

Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
           ++   +  +       +P+ +   S   +L+L  N I          + +L VL L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 175 FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPY 234
              I  E       + L+ ++L +N  T  +PS +F           S+LR L       
Sbjct: 111 IRQI--EVGAFNGLASLNTLELFDNWLT-VIPSGAF--------EYLSKLREL------- 152

Query: 235 GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVL 294
                                                L +N  + +   +   +  L  L
Sbjct: 153 ------------------------------------WLRNNPIESIPSYAFNRVPSLMRL 176

Query: 295 NLDNNNLQGHIPS-CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           +L       +I       L NL+ L+L        +P  L     LE  ++S N+  
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.4 bits (240), Expect = 7e-22
 Identities = 57/291 (19%), Positives = 96/291 (32%), Gaps = 53/291 (18%)

Query: 66  NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 125
           N    ++    NL  V P      S    +L+L  N       ++F     L ++ LS N
Sbjct: 43  NQFSKVICVRKNLREV-PD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 126 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD 185
             +     +    + L  L+L +N+++         +  L  L LR+N    I       
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--PSYAF 156

Query: 186 CRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
            R   L  +DL   +    +   +F  L        S LRYL                  
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGL--------SNLRYLN----------------- 191

Query: 246 DYSLIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297
                       +    + +I        L  + LS N    + P S   L  LQ L + 
Sbjct: 192 ------------LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-FTFLEFFDVSDN 347
            + +Q    +   NL +L  ++L++N  +  +P  L      LE   +  N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 26/217 (11%)

Query: 13  SMQYLNALNLSHNLLTS--------SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 64
            +++L  L LS N + +          NL            L L  +N LT         
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLN----------TLEL-FDNRLTTIPNGAFVY 134

Query: 65  LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLS 123
           L+ +K L L +N +  +           L  LDL        I    F   S L  ++L+
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR 183
               +  IP +L    KL+ LDL  N +S   P     + +L  L +  ++   I  E  
Sbjct: 194 MCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--ERN 249

Query: 184 TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
                  L  I+L++N  T  LP   F  L  ++ ++
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 55/287 (19%), Positives = 92/287 (32%), Gaps = 58/287 (20%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87
              NL+  P  +     +L L   N +     +   +L  ++ L LS N++  +      
Sbjct: 51  VRKNLREVPDGISTNTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 88  NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDL 146
             +  L+ L+L  N         F+  S+L  + L +N  +  IP  +      L  LDL
Sbjct: 110 GLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 147 G-NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL 205
           G   ++S         + NL  L L        ++E        KL  +DLS N  +  +
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLS-AI 222

Query: 206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPD 265
              SF  L          L+ L                              M  ++I  
Sbjct: 223 RPGSFQGL--------MHLQKLW-----------------------------MIQSQIQV 245

Query: 266 I----------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ 302
           I          L  I L+ N    +       L  L+ ++L +N   
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 59/298 (19%), Positives = 92/298 (30%), Gaps = 59/298 (19%)

Query: 90  SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 149
           S++ S +     N    +PD     +R  +++L  N  Q     S  +   LE L L  N
Sbjct: 42  SNQFSKVICVRKNL-REVPDGISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 150 QISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKS 209
            I          + NLN L L  N+   I          SKL  + L NN     +PS +
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 210 FLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--- 266
           F  +          LR L                             +    ++  I   
Sbjct: 156 FNRI--------PSLRRL----------------------------DLGELKRLSYISEG 179

Query: 267 -------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 319
                  L  + L+     R IP  +  L  L  L+L  N+L    P     L +L+ L 
Sbjct: 180 AFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 320 LSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNT---SFDGNSGLC 374
           +  ++              L   +++ N LT  +P    F    +        N   C
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD-LFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 13/161 (8%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWI-CNLNTVKNLVLS 74
           L  L L +N + S   +        P    L L     L+  I       L+ ++ L L+
Sbjct: 138 LKELWLRNNPIES---IPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLA 193

Query: 75  HNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
             NL  +      N +   +L  LDL GN+     P +F     L  + +  +  Q    
Sbjct: 194 MCNLREI-----PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
            +  N   L  ++L +N ++         + +L  + L  N
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 61/320 (19%), Positives = 105/320 (32%), Gaps = 72/320 (22%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
           S+  L   +P  I        L L +N++S +           L  L L  N        
Sbjct: 41  SDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEK 96

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
            F    +L  + +S N     IP +L   S L  L + +N+I          + N+N + 
Sbjct: 97  AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 170 LRSNKFYGIIKEPRTDCRFS--KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
           +  N       EP     F   KL+ + +S  + T  +P                 L  L
Sbjct: 154 MGGNPLENSGFEPGA---FDGLKLNYLRISEAKLT-GIPKDLP-----------ETLNEL 198

Query: 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI----------LTGIILSSNRF 277
                                         + +NKI  I          L  + L  N+ 
Sbjct: 199 H-----------------------------LDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 278 DRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIP------- 330
             +   S++ L  L+ L+LDNN L   +P+ L +L  L+ + L  N  + ++        
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 331 QQLVEFTFLEFFDVSDNYLT 350
              V+  +     + +N + 
Sbjct: 288 GFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 52/266 (19%), Positives = 83/266 (31%), Gaps = 29/266 (10%)

Query: 92  ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 151
            L V+          +P     ++ L  +DL +N               L  L L NN+I
Sbjct: 34  HLRVVQCSDLGL-KAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 152 SDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
           S         +  L  L +  N    I   P      S L  + + +NR   K+P   F 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEI--PPNL---PSSLVELRIHDNRIR-KVPKGVFS 144

Query: 212 CLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI----- 266
            L  M  +             P       L                ++  K+  I     
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEP--GAFDGL----------KLNYLRISEAKLTGIPKDLP 192

Query: 267 --LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 324
             L  + L  N+   +    +     L  L L +N ++      L  L  L  L L NN+
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 325 FSGQIPQQLVEFTFLEFFDVSDNYLT 350
            S ++P  L +   L+   +  N +T
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 53/329 (16%), Positives = 100/329 (30%), Gaps = 92/329 (27%)

Query: 14  MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVL 73
           +Q+L AL L +N ++                    +   + +         L  ++ L +
Sbjct: 77  LQHLYALVLVNNKISK-------------------IHEKAFSP--------LRKLQKLYI 109

Query: 74  SHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN-LFQGRIP 132
           S N+L  + P    +    L  L +  N         F     +  I++  N L      
Sbjct: 110 SKNHLVEIPPNLPSS----LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
               +  KL +L +   +++   P        LN L L  NK   I  E     R+SKL+
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAI--ELEDLLRYSKLY 220

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
            + L +N+    + + S              LR L                         
Sbjct: 221 RLGLGHNQIR-MIENGSLS--------FLPTLRELH------------------------ 247

Query: 253 SKGRMMTYNKIPDI---------LTGIILSSNRFDRVIPTSIANLKG------LQVLNLD 297
                +  NK+  +         L  + L +N   +V       +           ++L 
Sbjct: 248 -----LDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 298 NNNLQGHI--PSCLGNLTNLESLDLSNNR 324
           NN +      P+    +T+  ++   N +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 3e-21
 Identities = 57/328 (17%), Positives = 113/328 (34%), Gaps = 77/328 (23%)

Query: 36  PLPVPPPETILYLVSNNSLTG---EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE 92
            LP+    ++      N+++G   +  S             + N    +L +CL    ++
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQ 60

Query: 93  LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 152
            S L L   N   ++PD      ++ V++++ N     +P    +   LE+LD  +N++S
Sbjct: 61  FSELQLNRLN-LSSLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDNRLS 113

Query: 153 DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLC 212
            T P       +L  L + +N+   + + P      + L  I+  NN+ T  LP      
Sbjct: 114 -TLPE---LPASLKHLDVDNNQLTMLPELP------ALLEYINADNNQLT-MLPEL---- 158

Query: 213 LDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKI------PDI 266
                    + L  L                              +  N++      P+ 
Sbjct: 159 --------PTSLEVLS-----------------------------VRNNQLTFLPELPES 181

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQ----VLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           L  + +S+N     +P         +          N +  HIP  + +L    ++ L +
Sbjct: 182 LEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           N  S +I + L + T    +     Y +
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 1e-19
 Identities = 58/342 (16%), Positives = 106/342 (30%), Gaps = 62/342 (18%)

Query: 20  LNLSHNLLTS-SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNL 78
            N  +N ++    +          + +    + N     +    C +N    L L+  NL
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGE-NRNEAVSLLKE--CLINQFSELQLNRLNL 71

Query: 79  SGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 138
           S  LP  L     +++VL++  N    ++P+     + L  +D   N     +P    + 
Sbjct: 72  S-SLPDNLPP---QITVLEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLPELPASL 122

Query: 139 SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN 198
             L   D+ NNQ++   P        L  +   +N+   + + P      + L ++ + N
Sbjct: 123 KHL---DVDNNQLT-MLPELPA---LLEYINADNNQLTMLPELP------TSLEVLSVRN 169

Query: 199 NRFTGKLPSKSFLCLDAMKIVNTS--QLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR 256
           N+ T  LP       ++++ ++ S   L  L  V                         R
Sbjct: 170 NQLT-FLPE----LPESLEALDVSTNLLESLPAVP-----------------------VR 201

Query: 257 MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 316
                   +         NR    IP +I +L     + L++N L   I   L   T   
Sbjct: 202 NH---HSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

Query: 317 SLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQ 358
                   FS    QQ          D    +          
Sbjct: 258 DYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 1e-16
 Identities = 52/369 (14%), Positives = 108/369 (29%), Gaps = 54/369 (14%)

Query: 2   HGKIPKWLLDPSMQYLNALNLSHNLLTS--------------SNNLQGPLPVPPPE-TIL 46
             +    L +  +   + L L+   L+S              + N    LP  P     L
Sbjct: 46  RNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYL 105

Query: 47  YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT 106
               +N L+  +P    +L   K+L + +N L+ +LP+        L  ++   NN    
Sbjct: 106 DA-CDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPAL----LEYINA-DNNQLTM 154

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL- 165
           +P+     + L V+ + +N     +P    +   LE LD+  N +  + P+      +  
Sbjct: 155 LPELP---TSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSE 206

Query: 166 ---NVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
                   R N+    I   P           I L +N  +     +S     A    + 
Sbjct: 207 ETEIFFRCRENR----ITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHG 261

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
            ++ +                +   +            ++           S+       
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321

Query: 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
             S  N  G +            + + L  L+    L   +   +    +   +   L +
Sbjct: 322 TVSARNTSGFRE----------QVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTW 371

Query: 342 FDVSDNYLT 350
            ++    L 
Sbjct: 372 NNLRKTLLV 380

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 79/341 (23%), Positives = 129/341 (37%), Gaps = 70/341 (20%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTVKNLVLSH 75
            + L L++  L+S       LP  PP    L   S NSLT E+P    +L ++     + 
Sbjct: 73  AHELELNNLGLSS-------LPELPPHLESLVA-SCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 135
             LS + P         L  L +  NN    +P+     S L +ID+ +N  + ++P   
Sbjct: 124 KALSDLPPL--------LEYLGVS-NNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195
            +   LEF+  GNNQ+    P  L  +P L  +   +N    +   P        L  I 
Sbjct: 173 PS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLP------LSLESIV 221

Query: 196 LSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255
             NN    +LP           + N   L  +            +L+ T    L  + + 
Sbjct: 222 AGNNILE-ELPE----------LQNLPFLTTI--------YADNNLLKTLP-DLPPSLEA 261

Query: 256 RMMTYNKIPDI------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 309
             +  N + D+      LT + +S N F   +     NL     LN  +N ++  +    
Sbjct: 262 LNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLY---YLNASSNEIR-SLC--- 313

Query: 310 GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
               +LE L++SNN+   ++P        LE    S N+L 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.4 bits (225), Expect = 9e-20
 Identities = 70/358 (19%), Positives = 119/358 (33%), Gaps = 90/358 (25%)

Query: 10  LDPSMQYLNALNLSHNLLTS-------------SNNLQGPLPVPPPE-TILYLVSNNSLT 55
           L     +L +L  S N LT               NN    L   PP    L + SNN L 
Sbjct: 86  LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGV-SNNQLE 144

Query: 56  GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKES 115
            ++P  + N + +K + + +N+L   LP    +    L  +    N              
Sbjct: 145 -KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQL--EELPELQNLP 195

Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
            L  I   +N  + ++P   ++   LE +  GNN + +     L  +P L  +   +N  
Sbjct: 196 FLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILEE--LPELQNLPFLTTIYADNNLL 249

Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
             +   P        L  +++ +N  T  LP                 L +L        
Sbjct: 250 KTLPDLP------PSLEALNVRDNYLT-DLPELP------------QSLTFLD------- 283

Query: 236 QVSTDLISTYDYSLIMNSKGRMMTYNKIPDI---LTGIILSSNRFDRVIPTSIANLKGLQ 292
                        +  N       ++ + ++   L  +  SSN     I +       L+
Sbjct: 284 -------------VSENI------FSGLSELPPNLYYLNASSNE----IRSLCDLPPSLE 320

Query: 293 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
            LN+ NN L   +P+       LE L  S N  + ++P+       L+   V  N L 
Sbjct: 321 ELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 55/317 (17%), Positives = 109/317 (34%), Gaps = 57/317 (17%)

Query: 12  PSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNL 71
            ++ +L A+   +N L    +L   L        +    NN L  E+P  + NL  +  +
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLPLSL------ESIVA-GNNILE-ELPE-LQNLPFLTTI 242

Query: 72  VLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 131
              +N L   LP    +    L  L+++ +N+   +P+       L  +D+S N+F   +
Sbjct: 243 YADNNLLK-TLPDLPPS----LEALNVR-DNYLTDLPELP---QSLTFLDVSENIFS-GL 292

Query: 132 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL 191
                N   L +L+  +N+I     S     P+L  L + +NK   +   P       +L
Sbjct: 293 SELPPN---LYYLNASSNEIR----SLCDLPPSLEELNVSNNKLIELPALP------PRL 339

Query: 192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS--QLRYLQDVISPYGQVSTDLISTYDYSL 249
             +  S N    ++P         +K ++     LR   D+      +  +        L
Sbjct: 340 ERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 309
             N              L  + + +N   R  P    ++   + L +++  +        
Sbjct: 395 PQN--------------LKQLHVETNPL-REFPDIPESV---EDLRMNSERVVDPYEFAH 436

Query: 310 GNLTNLESLDLSNNRFS 326
                LE     ++   
Sbjct: 437 ETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 54/309 (17%), Positives = 102/309 (33%), Gaps = 81/309 (26%)

Query: 48  LVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI 107
           L  +++LT E+P    N+ +      + +      P   G    E++V  L+        
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-EMAVSRLRDC------ 68

Query: 108 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV 167
                 + +   ++L++      +P        LE L    N ++   P    ++ +L V
Sbjct: 69  -----LDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
                     +            L  + +SNN+   KLP           + N+S L+ +
Sbjct: 119 DNNNLKALSDLP---------PLLEYLGVSNNQLE-KLPE----------LQNSSFLKII 158

Query: 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI------LTGIILSSNRFDRVI 281
                                         +  N +  +      L  I   +N+    +
Sbjct: 159 -----------------------------DVDNNSLKKLPDLPPSLEFIAAGNNQL-EEL 188

Query: 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           P  + NL  L  +  DNN+L+  +P       +LES+   NN    ++P +L    FL  
Sbjct: 189 P-ELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE-ELP-ELQNLPFLTT 241

Query: 342 FDVSDNYLT 350
               +N L 
Sbjct: 242 IYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 63/382 (16%), Positives = 138/382 (36%), Gaps = 68/382 (17%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLT-----------SSNNLQGPLPVPPPETILYL-VSN 51
           ++P+     S++ L   N +   L+           S+N L+    +     +  + V N
Sbjct: 105 ELPELP--QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162

Query: 52  NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF 111
           NSL  ++P    +L   + +   +N L   LP+ L N    L+ +    N+    +PD  
Sbjct: 163 NSLK-KLPDLPPSL---EFIAAGNNQLE-ELPE-LQNLPF-LTAIYADNNSL-KKLPDLP 214

Query: 112 IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR 171
           +    L  I   +N+        L N   L  +   NN +  T P      P+L  L +R
Sbjct: 215 LS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVR 265

Query: 172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN-TSQLRYLQDV 230
            N    + + P++    + L + +   +  +   P+  +L   + +I +       L+++
Sbjct: 266 DNYLTDLPELPQS---LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322

Query: 231 ISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI------LTGIILSSNRFDRVIPTS 284
                 VS + +     +L    +  + ++N + ++      L  + +  N   R  P  
Sbjct: 323 N-----VSNNKLIELP-ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPL-REFPDI 375

Query: 285 IANLK----------------GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ 328
             +++                 L+ L+++ N L+   P    ++ +L    +++ R    
Sbjct: 376 PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDP 431

Query: 329 IPQQLVEFTFLEFFDVSDNYLT 350
                     LE      ++  
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 18/101 (17%)

Query: 267 LTGIILSSNRFDRVIPTSIANL-------------KGLQVLNLDNNNLQGHIPSCLGNLT 313
            T    + + ++R  P                   +    L L+N  L   +P    +L 
Sbjct: 36  KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL- 93

Query: 314 NLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
             ESL  S N  + ++P+       L   + +   L+   P
Sbjct: 94  --ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 18/97 (18%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-------------T 313
           L   +  S+     +P    N+K         +  + + P   G                
Sbjct: 13  LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 314 NLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
               L+L+N   S  +P+       LE    S N LT
Sbjct: 72  QAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT 104

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 281 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
           I     +   LQ     ++NL   +P    N+ +      + + +    P    E   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 341 FFDVSDNYLTGAIPL 355
              + D     A  L
Sbjct: 62  VSRLRDCLDRQAHEL 76

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 64/360 (17%), Positives = 127/360 (35%), Gaps = 40/360 (11%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTVKNLVLSHNNL 78
           ++LS N +   N              L +    +    I +     L+++  L L +N  
Sbjct: 35  VDLSLNSIAELNE--TSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 79  SGVLPQCLGNFSDELSVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQGRIPRSL- 135
             +        +  L VL L   N  G +   + F   + L ++ L  N  +   P S  
Sbjct: 92  LQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 136 VNCSKLEFLDLGNNQIS----DTFPSWLGTIPNLNVLILRSNKFYGI------IKEPRTD 185
           +N  +   LDL  N++     +   ++ G   +  +L L S     +       ++    
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 186 CRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
            + + +  +DLS N F  +  +K F    A   + +  L    ++ S +G  +      +
Sbjct: 209 FKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
            +  +  S             +    LS ++   ++ +  ++   L+ L L  N +   I
Sbjct: 268 TFKGLEASG------------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KI 314

Query: 306 PS-CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
                  LT+L  L+LS N       +       LE  D+S N++  A+       +F  
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQ----SFLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.3 bits (201), Expect = 8e-17
 Identities = 50/336 (14%), Positives = 107/336 (31%), Gaps = 52/336 (15%)

Query: 50  SNNSLTG--EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI 107
            N  L    E+P+ +        + LS N+++ +          +L  L ++       I
Sbjct: 18  INRGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVI 70

Query: 108 P-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF--PSWLGTIPN 164
             +TF   S L ++ L +N F      +    + LE L L    +       ++   + +
Sbjct: 71  RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQL 224
           L +L+LR N    I           + H++DL+ N+    +  +  L           +L
Sbjct: 131 LEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVK-SICEEDLLNFQGKH-FTLLRL 187

Query: 225 RYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII------------- 271
             +         +  +           +     ++ N   + +                 
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFK--NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 272 ----------LSSNRFDRVIPTSIANLK--GLQVLNLDNNNLQGHIPSCL-GNLTNLESL 318
                          F      +   L+  G++  +L  + +   +   +  + T+LE L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 319 DLSNNRFSGQIP----QQLVEFTFLEFFDVSDNYLT 350
            L+ N  + +I       L     L   ++S N+L 
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKL---NLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 74/368 (20%), Positives = 119/368 (32%), Gaps = 75/368 (20%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
           L  L L +N           L                           L  ++ L L+  
Sbjct: 81  LIILKLDYNQFLQ-------LE--------------------TGAFNGLANLEVLTLTQC 113

Query: 77  NL-SGVLPQCLGNFSD--ELSVLDLQGNNFFGTIPDT-FIKESRLGVIDLSHNLFQGRIP 132
           NL   VL      F     L +L L+ NN     P + F+   R  V+DL+ N  +  I 
Sbjct: 114 NLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SIC 170

Query: 133 RSL---VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
                         L L +  + D    WLG     N                    + +
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF------------------KNT 212

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
            +  +DLS N F  +  +K F    A   + +  L    ++ S +G  +      + +  
Sbjct: 213 SITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 250 IMNSKGRM--MTYNKIPDI----------LTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297
           +  S  +   ++ +KI  +          L  + L+ N  +++   +   L  L  LNL 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL-VEFTFLEFFDVSDNYLTGAIPLG 356
            N L         NL  LE LDLS N     +  Q  +    L+   +  N L  ++P G
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDG 389

Query: 357 KQFATFDN 364
                FD 
Sbjct: 390 ----IFDR 393

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 55/320 (17%), Positives = 95/320 (29%), Gaps = 71/320 (22%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSN-------NSLTGEIPSWICNL 65
           +M+  + L+L+ N + S              T+L L S          L  E        
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 66  NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 125
            ++  L LS N     + +   +      +  L  +N +                D  + 
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----GHTNFKDPDNF 267

Query: 126 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD 185
            F+G      +  S ++  DL  ++I     S      +L  L L  N+   I  +    
Sbjct: 268 TFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI--DDNAF 319

Query: 186 CRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
              + L  ++LS N     + S+ F  L         +L  L                  
Sbjct: 320 WGLTHLLKLNLSQNFLG-SIDSRMFENL--------DKLEVL------------------ 352

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
                       ++YN I  +          F          L  L+ L LD N L+   
Sbjct: 353 -----------DLSYNHIRALGDQS------FL--------GLPNLKELALDTNQLKSVP 387

Query: 306 PSCLGNLTNLESLDLSNNRF 325
                 LT+L+ + L  N +
Sbjct: 388 DGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 49/277 (17%), Positives = 85/277 (30%), Gaps = 65/277 (23%)

Query: 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL-GTIPNLNVLILRSNKFYG 177
            +DLS N        S      L+FL +          +     + +L +L L  N+F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 178 IIKEPRTDCRFSKLHIIDLSNNRFTG-KLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236
           +  E       + L ++ L+     G  L    F  L        + L  L         
Sbjct: 94  L--ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL--------TSLEMLV-------- 135

Query: 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDI-----------LTGIILSSNRFDRVIPTSI 285
                                +  N I  I              + L+ N+   +    +
Sbjct: 136 ---------------------LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 286 ANLKG--LQVLNLDNNNLQ--------GHIPSCLGNLTNLESLDLSNNRFSGQIPQ---Q 332
            N +G    +L L +  LQ                  T++ +LDLS N F   + +    
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 333 LVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDG 369
            +  T ++   +S++Y  G+      F   DN +F G
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 263 IPDI---LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESL 318
           +P++   +  + LS N    +  TS + L+ LQ L ++       I +     L++L  L
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 319 DLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI 353
            L  N+F             LE   ++   L GA+
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 54/344 (15%), Positives = 97/344 (28%), Gaps = 80/344 (23%)

Query: 16  YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSH 75
           +L  +  S   L        P  +PP   +L L  NN +T        NL  +  L+L +
Sbjct: 32  HLRVVQCSDLGLEKV-----PKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILIN 85

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 135
           N +S + P        +L  L L  N               L  + +  N          
Sbjct: 86  NKISKISPGAFAPLV-KLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVF 141

Query: 136 VNCSKLEFLDLGNNQISDTF--PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
              +++  ++LG N +  +         +  L+ + +       I            L  
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-----PQGLPPSLTE 196

Query: 194 IDLSNNRFTGKLPSKSF--------LCLDAMKI--------VNTSQLRYLQDVISPYGQV 237
           + L  N+ T K+ + S         L L    I         NT  LR L          
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH--------- 246

Query: 238 STDLISTYDYSLIMNSKGRMMTYNKIPDI---------LTGIILSSNRFDRVIPTSIA-- 286
                               +  NK+  +         +  + L +N    +        
Sbjct: 247 --------------------LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 287 ----NLKGLQVLNLDNNNLQGHI--PSCLGNLTNLESLDLSNNR 324
                      ++L +N +Q     PS    +    ++ L N +
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 51/266 (19%), Positives = 90/266 (33%), Gaps = 28/266 (10%)

Query: 92  ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 151
            L V+          +P     ++   ++DL +N           N   L  L L NN+I
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 152 SDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
           S   P     +  L  L L  N+   +    +       L  + +  N  T K+    F 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKEL--PEKM---PKTLQELRVHENEIT-KVRKSVFN 142

Query: 212 CLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI----- 266
            L+ M +V           I         +       + +           I  I     
Sbjct: 143 GLNQMIVVELGTNPLKSSGIEN--GAFQGMKKL--SYIRIA-------DTNITTIPQGLP 191

Query: 267 --LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 324
             LT + L  N+  +V   S+  L  L  L L  N++       L N  +L  L L+NN+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 325 FSGQIPQQLVEFTFLEFFDVSDNYLT 350
              ++P  L +  +++   + +N ++
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 32/203 (15%)

Query: 14  MQYLNALNLSHNLLTSS----------NNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC 63
           +  +  + L  N L SS            L            + + ++ ++T  IP  + 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLS----------YIRI-ADTNIT-TIPQGL- 190

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
              ++  L L  N ++ V    L   +  L+ L L  N+       +      L  + L+
Sbjct: 191 -PPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQIS----DTF--PSWLGTIPNLNVLILRSNKFYG 177
           +N    ++P  L +   ++ + L NN IS    + F  P +     + + + L SN    
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 178 IIKEPRTDCRFSKLHIIDLSNNR 200
              +P T         + L N +
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNYK 330

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 52/275 (18%), Positives = 78/275 (28%), Gaps = 59/275 (21%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
               L   +P  I      + + L  N +S V           L++L L  N        
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAA 74

Query: 110 TFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168
            F   + L  +DLS N     +   +     +L  L L    + +  P     +  L  L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ 228
            L+ N    +     T      L  + L  NR +  +P ++F             L  L 
Sbjct: 135 YLQDNALQAL--PDDTFRDLGNLTHLFLHGNRIS-SVPERAF--------RGLHSLDRLL 183

Query: 229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL 288
                                                      L  NR   V P +  +L
Sbjct: 184 -------------------------------------------LHQNRVAHVHPHAFRDL 200

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
             L  L L  NNL       L  L  L+ L L++N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 52/286 (18%), Positives = 79/286 (27%), Gaps = 59/286 (20%)

Query: 63  CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122
           C              L  V P            + L GN        +F     L ++ L
Sbjct: 8   CYNEPKVTTSCPQQGLQAV-PV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 123 SHNLFQGRIPRSLVNCSKLEFLDLGNN-QISDTFPSWLGTIPNLNVLILRSNKFYGIIKE 181
             N+       +    + LE LDL +N Q+    P+    +  L+ L L       +   
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--G 121

Query: 182 PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL 241
           P      + L  + L +N     LP  +F  L          L +L              
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL--------GNLTHL-------------- 158

Query: 242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL 301
                                         L  NR   V   +   L  L  L L  N +
Sbjct: 159 -----------------------------FLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 302 QGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
               P    +L  L +L L  N  S    + L     L++  ++DN
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 48/277 (17%), Positives = 82/277 (29%), Gaps = 60/277 (21%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87
               LQ  P+ +P     ++L   N ++    +       +  L L  N L+ +      
Sbjct: 19  PQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 88  NFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLD 145
             +  L  LDL  N    ++   TF    RL  + L     Q  +        + L++L 
Sbjct: 78  GLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 146 LGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL 205
           L +N +          + NL  L L  N+   +    R       L  + L  NR    +
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPD 265
              +F  L         +L  L                                      
Sbjct: 193 HPHAFRDL--------GRLMTLY------------------------------------- 207

Query: 266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ 302
                 L +N    +   ++A L+ LQ L L++N   
Sbjct: 208 ------LFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 41/216 (18%), Positives = 61/216 (28%), Gaps = 65/216 (30%)

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
            + + L  N+IS    +      NL +L L SN    I  +       + L  +DLS+N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNA 91

Query: 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY 260
               +   +F            +L  L                                 
Sbjct: 92  QLRSVDPATF--------HGLGRLHTL--------------------------------- 110

Query: 261 NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLD 319
                      L       + P     L  LQ L L +N LQ  +P     +L NL  L 
Sbjct: 111 ----------HLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 320 LSNNRFSGQIPQQLVEFTF-----LEFFDVSDNYLT 350
           L  NR        + E  F     L+   +  N + 
Sbjct: 160 LHGNRI-----SSVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 40/183 (21%), Positives = 55/183 (30%), Gaps = 31/183 (16%)

Query: 17  LNALNLSHNLLTS-----------------SNNLQGPLPVPPPET--------ILYLVSN 51
           L  L L  N+L                   S+N Q  L    P T         L+L   
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ--LRSVDPATFHGLGRLHTLHL-DR 114

Query: 52  NSLTGEIPS-WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDT 110
             L  E+       L  ++ L L  N L  +      +    L+ L L GN         
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERA 172

Query: 111 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLIL 170
           F     L  + L  N      P +  +  +L  L L  N +S      L  +  L  L L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 171 RSN 173
             N
Sbjct: 233 NDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           IP     I L  NR   V   S    + L +L L +N L     +    L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 323 NRFSGQIPQQ-LVEFTFLEFFDVSDNYLT 350
           N     +          L    +    L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 5e-18
 Identities = 54/323 (16%), Positives = 87/323 (26%), Gaps = 72/323 (22%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSW---ICNLNTVKNLVLSH 75
           L      + +  +L     +    ++  L V    +   I      +  ++ ++ L L +
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKE------SRLGVIDLSHNLFQG 129
             ++G  P  L   +    +  L   N      D ++ E        L V+ ++      
Sbjct: 105 LEVTGTAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSW----LGTIPNLNVLILRSNKFYGIIKE-PRT 184
                +     L  LDL +N                 P L VL LR+             
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244
                +L  +DLS+N       + S            SQL  L                 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCD--------WPSQLNSL----------------- 258

Query: 245 YDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH 304
                                      LS     +V     A L    VL+L  N L   
Sbjct: 259 --------------------------NLSFTGLKQVPKGLPAKL---SVLDLSYNRLD-R 288

Query: 305 IPSCLGNLTNLESLDLSNNRFSG 327
            PS    L  + +L L  N F  
Sbjct: 289 NPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 39/209 (18%), Positives = 63/209 (30%), Gaps = 15/209 (7%)

Query: 3   GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSW 61
           G  P  LL+ +   LN LNL +    + +     L       +  L ++           
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 62  ICNLNTVKNLVLSHNNLSGVLP----QCLGNFSD--ELSVLDLQGNNFFGTIPDTFIKES 115
           +     +  L LS N   G        C   F     L++ +       G          
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 116 RLGVIDLSHNLFQGRIPRSL-VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
           +L  +DLSHN  +           S+L  L+L    +        G    L+VL L  N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNR 285

Query: 175 FYGIIKEPRTDCRFSKLHIIDLSNNRFTG 203
                          ++  + L  N F  
Sbjct: 286 LDRNPSP----DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 46/211 (21%), Positives = 69/211 (32%), Gaps = 20/211 (9%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS----WICNLNTV 68
            +  L  L L +  +T +          P   IL L  N S                  +
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGL 151

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDT----FIKESRLGVIDLSH 124
           K L ++  +      + +  F   LS LDL  N   G          +K   L V+ L +
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 125 NLFQ---GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP-NLNVLILRSNKFYGIIK 180
              +   G          +L+ LDL +N + D   +     P  LN L L       +  
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-- 268

Query: 181 EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
                   +KL ++DLS NR     PS   L
Sbjct: 269 ---PKGLPAKLSVLDLSYNRLDR-NPSPDEL 295

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 42/245 (17%), Positives = 76/245 (31%), Gaps = 38/245 (15%)

Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW---LGTIPNLNVLILRSN 173
           L  +D   +L Q      ++    L+ L +   +I          +  I  L  L L + 
Sbjct: 49  LKRVDTEADLGQ---FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP 233
           +  G    P  +     L+I++L N  +  +        L  ++      L+ L    + 
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-----LAELQQWLKPGLKVLSIAQAH 160

Query: 234 YGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA----NLK 289
               S + +  +                     L+ + LS N          A       
Sbjct: 161 SLNFSCEQVRVF-------------------PALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 290 GLQVLNLDNNNLQ---GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF-LEFFDVS 345
            LQVL L N  ++   G   +       L+ LDLS+N           ++   L   ++S
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 346 DNYLT 350
              L 
Sbjct: 262 FTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLD-NNNLQGHIPSCLGNL-----TNLESLDL 320
           L  + L +       P  +    G  +  L+  N       + L  L       L+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL 355
           +         +Q+  F  L   D+SDN   G   L
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 51/287 (17%), Positives = 100/287 (34%), Gaps = 23/287 (8%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
           S+ SL   IPS +     VK+L LS+N ++ +    L      L  L L  N       D
Sbjct: 39  SSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEED 94

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVL 168
           +F     L  +DLS+N             S L FL+L  N        S    +  L +L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ 228
            + +   +  I + +     + L  +++  +        KS   +  +  +    L   Q
Sbjct: 155 RVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLI---LHMKQ 209

Query: 229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI----------LTGIILSSNRFD 278
                  ++  D+ S+ +   + ++      ++++                + ++     
Sbjct: 210 --HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL- 266

Query: 279 RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 325
             +   +  + GL  L    N L+         LT+L+ + L  N +
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 50/297 (16%), Positives = 104/297 (35%), Gaps = 47/297 (15%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLTGEIPSWI-CNLNTV 68
           + +L+LS+N +T          +   +         L L ++N +   I      +L ++
Sbjct: 54  VKSLDLSNNRITY---------ISNSDLQRCVNLQALVL-TSNGIN-TIEEDSFSSLGSL 102

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD--TFIKESRLGVIDLSHNL 126
           ++L LS+N LS +        S  L+ L+L GN +  T+ +   F   ++L ++ + +  
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMD 160

Query: 127 FQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD 185
              +I  +     + LE L++  + +    P  L +I N++ LIL   +   +       
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFV 218

Query: 186 CRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
              S +  ++L +               +   ++     R +                  
Sbjct: 219 DVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNV------------------ 259

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ 302
              +   S  ++M        L  +  S N+   V       L  LQ + L  N   
Sbjct: 260 --KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 23/235 (9%)

Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
            R G+   S       IP  L     ++ LDL NN+I+    S L    NL  L+L SN 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 175 FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ------ 228
              I  E  +      L  +DLS N  +  L S  F           S L +L       
Sbjct: 88  INTI--EEDSFSSLGSLEHLDLSYNYLS-NLSSSWF--------KPLSSLTFLNLLGNPY 136

Query: 229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI--LTGIILSSNRFDRVIPTSIA 286
             +     + + L       +        +       +  L  + + ++      P S+ 
Sbjct: 137 KTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           +++ +  L L        +   +   +++E L+L +         +L        
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 44  TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN- 102
             L +   + L    P  + ++  V +L+L       +L   +   S  +  L+L+  + 
Sbjct: 177 EELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELRDTDL 234

Query: 103 -------FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 155
                        ++ IK+     + ++      ++ + L   S L  L+   NQ+    
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVP 293

Query: 156 PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
                 + +L  + L +N +          C  
Sbjct: 294 DGIFDRLTSLQKIWLHTNPW-------DCSCPR 319

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           + + +  + LS+NR   +  + +     LQ L L +N +         +L +LE LDLS 
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 323 NRFSGQIPQQL-VEFTFLEFFDVSDNYLT 350
           N  S  +        + L F ++  N   
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 272 LSSNRFDRV---IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ 328
            SS   + +   +  +      ++ L+L NN +     S L    NL++L L++N  +  
Sbjct: 38  GSSGSLNSIPSGLTEA------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 329 IPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTS 366
                     LE  D+S NYL+  +        F   S
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSS----WFKPLS 124

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.1 bits (200), Expect = 1e-16
 Identities = 54/321 (16%), Positives = 100/321 (31%), Gaps = 54/321 (16%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS 79
             L  N  +   ++   L   P  + L L +  +        +  +        S +N+ 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 80  GVLPQCLGNFS------DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR 133
                   +F         LS+  +  + F       +   S + + + + +  +     
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
                S    LD  NN ++DT     G +  L  LIL+ N+   + K      +   L  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 194 IDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253
           +D+S N  +                     L  L                          
Sbjct: 379 LDISQNSVSYDEKKGDCSWT--------KSLLSLN------------------------- 405

Query: 254 KGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
               M+ N + D         +  + L SN+    IP  +  L+ LQ LN+ +N L+  +
Sbjct: 406 ----MSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SV 459

Query: 306 PSC-LGNLTNLESLDLSNNRF 325
           P      LT+L+ + L  N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 54/351 (15%), Positives = 103/351 (29%), Gaps = 35/351 (9%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPE-------TILYLVSNNSLTGEIPSWICNLNTVKNLV 72
           LN+S N ++          +   +        IL + S+N +     S       ++ L 
Sbjct: 26  LNISQNYISE---------LWTSDILSLSKLRILII-SHNRIQYLDISVFKFNQELEYLD 75

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDT--FIKESRLGVIDLSHNLFQGR 130
           LSHN L  +      N    L  LDL  N F   +P    F   S+L  + LS    +  
Sbjct: 76  LSHNKLVKISCHPTVN----LKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 131 IPRSLVNCSKLE-FLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
               + + +  +  L LG        P  L      ++ I+             +    +
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVS----TDLISTY 245
            L + ++       K      +          S L       +    +         + +
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGI------ILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
            +S+        + +       T +       + S+ F             + + N   +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
             +     C   ++    LD SNN  +  + +     T LE   +  N L 
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 63/360 (17%), Positives = 123/360 (34%), Gaps = 28/360 (7%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPE--TILYLVSNNSLTGEIPSWICNLNTVKN 70
             Q L  L+LSHN L         +   P      L L  N      I     N++ +K 
Sbjct: 67  FNQELEYLDLSHNKLVK-------ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 71  LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQ 128
           L LS  +L       + + +    +L L         P+         L ++  ++  F 
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISD------TFPSWLGTIPNLNVLILRSNKFYG-IIKE 181
             +  S+   + LE  ++      +      +  + L T P L+ L L + +        
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 182 PRTDCRFSKLHIIDLSNNRFTGKLPSKSF-LCLDAMKIVNTSQLRYLQDVISPYGQVSTD 240
                  + +    +SN +  G+L  + F     ++K ++  Q+            +   
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY-IYEI 298

Query: 241 LISTYDYSLIMNSKGRMMTYNKIPDILTG---IILSSNRFDRVIPTSIANLKGLQVLNLD 297
             +    +  ++     M +   P  ++    +  S+N     +  +  +L  L+ L L 
Sbjct: 299 FSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 298 NNNLQ--GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-TFLEFFDVSDNYLTGAIP 354
            N L+    I      + +L+ LD+S N  S    +    +   L   ++S N LT  I 
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 49/301 (16%), Positives = 105/301 (34%), Gaps = 18/301 (5%)

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
            S N L  V P+   + S + ++L++  N          +  S+L ++ +SHN  Q    
Sbjct: 7   RSKNGLIHV-PK---DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
                  +LE+LDL +N++            NL  L L  N F  +          S+L 
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFG-NMSQLK 118

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDV------ISPYGQVSTDLISTYD 246
            + LS      K        L+  K++      Y +              +     +  +
Sbjct: 119 FLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 247 YSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306
           +  I++   + +   ++ +I   +  +   +   I   +     L  L L+N     +  
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 307 SCLGNL---TNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFD 363
             +  L   T +    +SN +  GQ+  +  +++      +S + +   +    Q   ++
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 364 N 364
            
Sbjct: 298 I 298

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLT--GEIPSWICNLNTVKNLVLS 74
              L+ S+NLLT +               L L   N L    +I      + +++ L +S
Sbjct: 326 FLHLDFSNNLLTDTVF--ENCGHLTELETLIL-QMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 134
            N++S    +   +++  L  L++  N    TI        R+ V+DL  N  +  IP+ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
           +V    L+ L++ +NQ+          + +L  + L +N +
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 53/289 (18%), Positives = 92/289 (31%), Gaps = 65/289 (22%)

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
              +     +  + P     F+ E    +L+  +   T   T  + + +  I  +++  +
Sbjct: 2   GETITVSTPIKQIFP--DDAFA-ETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK 56

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
             +   +     +  L L  N+++D  P  L  + NL  L L  NK    IK+  +    
Sbjct: 57  -SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDL 108

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248
            KL  + L +N  +               I     L  L+                   S
Sbjct: 109 KKLKSLSLEHNGIS--------------DINGLVHLPQLE-------------------S 135

Query: 249 LIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN 300
           L +         NKI DI        L  + L  N+   +    +A L  LQ L L  N+
Sbjct: 136 LYLG-------NNKITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH 186

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349
           +       L  L NL+ L+L +     +                +D  L
Sbjct: 187 IS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 65/330 (19%), Positives = 116/330 (35%), Gaps = 80/330 (24%)

Query: 25  NLLTSSNNLQ--GPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82
             +T S  ++   P           L    S+T  +      LN++  ++ +++++  V 
Sbjct: 3   ETITVSTPIKQIFPDDAFAETIKDNL-KKKSVTDAVT--QNELNSIDQIIANNSDIKSV- 58

Query: 83  PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSK 140
            Q +      ++ L L GN      P T +K   LG + L  N    +I    SL +  K
Sbjct: 59  -QGIQYLP-NVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDEN----KIKDLSSLKDLKK 110

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
           L+ L L +N ISD   + L  +P L  L L +NK    I +     R +KL  + L +N+
Sbjct: 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQ 164

Query: 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY 260
            +               IV  + L  LQ++                           ++ 
Sbjct: 165 IS--------------DIVPLAGLTKLQNL--------------------------YLSK 184

Query: 261 NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 320
           N I D+                 ++A LK L VL L +        +   NL    ++  
Sbjct: 185 NHISDL----------------RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           ++       P+ + +    E  +V  +   
Sbjct: 229 TDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 20/280 (7%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  ++ +  +++ + S   +Q    V    T L+L + N LT +I   + NL  +  L 
Sbjct: 41  ELNSIDQIIANNSDIKSVQGIQYLPNV----TKLFL-NGNKLT-DIKP-LTNLKNLGWLF 93

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
           L  N +  +    L +   +L  L L+ N    +  +  +   +L  + L +N  +    
Sbjct: 94  LDENKIKDLSS--LKDLK-KLKSLSLEHNGI--SDINGLVHLPQLESLYLGNN--KITDI 146

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
             L   +KL+ L L +NQISD  P  L  +  L  L L  N     I + R       L 
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLD 200

Query: 193 IIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
           +++L +     K  +     +    + NT       ++IS  G      +  +       
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

Query: 253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ 292
                     I            +  + + T   ++ G  
Sbjct: 261 VSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 48/223 (21%)

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
           +      +  I   FP             L+       + +  T    + +  I  +N+ 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSD 54

Query: 201 FT-----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255
                    LP+ + L L+  K+ +   L  L            +L   +          
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNL-----------KNLGWLF---------- 93

Query: 256 RMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS 307
             +  NKI D+        L  + L  N    +    + +L  L+ L L NN +     +
Sbjct: 94  --LDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DIT 147

Query: 308 CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
            L  LT L++L L +N+ S  +P  L   T L+   +S N+++
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 57/275 (20%), Positives = 91/275 (33%), Gaps = 56/275 (20%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
              +   +IP  +    + KNL LS N L  +      +F  EL VLDL       TI D
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEI-QTIED 69

Query: 110 -TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168
             +   S L  + L+ N  Q     +    S L+ L      ++      +G +  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ 228
            +  N      K P      + L  +DLS+N+    +       L  M ++N S      
Sbjct: 130 NVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS------ 181

Query: 229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL 288
                                                    + LS N  + + P +   +
Sbjct: 182 -----------------------------------------LDLSLNPMNFIQPGAFKEI 200

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
           + L+ L LD N L+         LT+L+ + L  N
Sbjct: 201 R-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWI-CNLNTVKNLVLS 74
           L+ L L+ N + S   L             L  V  N  +  + ++   +L T+K L ++
Sbjct: 78  LSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVA 132

Query: 75  HNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTIP-DTFIKESRLGVI----DLSHNLF 127
           HN +     +    FS+   L  LDL  N    +I         ++ ++    DLS N  
Sbjct: 133 HNLIQSF--KLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
              I        +L+ L L  NQ+          + +L  + L +N
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 46/239 (19%), Positives = 72/239 (30%), Gaps = 61/239 (25%)

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
            + LDL  N +         + P L VL L   +   I  E       S L  + L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNP 87

Query: 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY 260
               L   +F  L        S L+ L                                 
Sbjct: 88  IQ-SLALGAFSGL--------SSLQKLV-----------------------------AVE 109

Query: 261 NKIPDI----------LTGIILSSNRFDRVIPTSI-ANLKGLQVLNLDNNNLQGHIPSCL 309
             +  +          L  + ++ N           +NL  L+ L+L +N +Q    + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 310 GNLTNLE----SLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
             L  +     SLDLS N  +  I     +   L+   +  N L  ++P G     FD 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDG----IFDR 222

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +P     + LS N    +   S  +   LQVL+L    +Q        +L++L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 323 NR 324
           N 
Sbjct: 86  NP 87

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 52/285 (18%), Positives = 89/285 (31%), Gaps = 58/285 (20%)

Query: 92  ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 151
               +    +N   T   T      +  +          I   +   + L  L+L +NQI
Sbjct: 20  NAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 152 SDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT-----GKLP 206
           +D  P  L  +  +  L L  N     +K          +  +DL++ + T       L 
Sbjct: 76  TDLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 207 SKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI 266
           +   L LD  +I N S L  L +                                     
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTN------------------------------------- 152

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           L  + + + +   + P  +ANL  L  L  D+N +     S L +L NL  + L NN+ S
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS 208

Query: 327 GQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNS 371
              P  L   + L    +++  +T             N     + 
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 73/277 (26%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
             +++T  +     +L+ +  L      ++ +  + +   +  L  L+L+ N    T   
Sbjct: 27  GKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLN-NLIGLELKDNQI--TDLA 79

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
                +++  ++LS N    +   ++     ++ LDL + QI+D  P  L  + NL VL 
Sbjct: 80  PLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD 229
           L  N+    I         + L  + + N + +               +   + L  L  
Sbjct: 136 LDLNQ----ITNISPLAGLTNLQYLSIGNAQVS--------------DLTPLANLSKLTT 177

Query: 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLK 289
           +                              NKI DI                + +A+L 
Sbjct: 178 LK--------------------------ADDNKISDI----------------SPLASLP 195

Query: 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
            L  ++L NN +    P  L N +NL  + L+N   +
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 48/236 (20%)

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
               +    +  G + ++DT       +  +  L          +         + L  +
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGL 68

Query: 195 DLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249
           +L +N+ T       L   + L L    + N S +  LQ +                 +L
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSI----------------KTL 112

Query: 250 IMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL 301
            + S        +I D+        L  + L  N+   + P  +A L  LQ L++ N  +
Sbjct: 113 DLTS-------TQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163

Query: 302 QGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
               P  L NL+ L +L   +N+ S   P  L     L    + +N ++   PL  
Sbjct: 164 SDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 62/345 (17%), Positives = 124/345 (35%), Gaps = 57/345 (16%)

Query: 4   KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNN--SLTGEIPSW 61
            I     DP++     +    + +T +        +    T L        ++ G     
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGI----TTLSAFGTGVTTIEG----- 58

Query: 62  ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121
           +  LN +  L L  N ++ + P  L N + +++ L+L GN               +  +D
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP--LKNLT-KITELELSGNPL--KNVSAIAGLQSIKTLD 113

Query: 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKE 181
           L+        P  L   S L+ L L  NQI++  P  L  + NL  L + + +   +   
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--T 167

Query: 182 PRTDCRFSKLHIIDLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQ--DVISPY 234
           P  +   SKL  +   +N+ +       LP+   + L   +I + S L       +++  
Sbjct: 168 PLANL--SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

Query: 235 GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVL 294
            Q  T+    Y+ +L++                   ++       + P +I++       
Sbjct: 226 NQTITNQPVFYNNNLVVP-----------------NVVKGPSGAPIAPATISDN-----G 263

Query: 295 NLDNNNLQGHIPSCLGNLT----NLESLDLSNNRFSGQIPQQLVE 335
              + NL  ++ S + N++       +   +   FSG + Q L E
Sbjct: 264 TYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTE 308

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 48/223 (21%)

Query: 148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT----- 202
              I+  FP     + N   +    +     + +  T      +  +       T     
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSN----VTDTVTQADLDGITTLSAFGTGVTTIEGV 59

Query: 203 GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNK 262
             L +   L L   +I + + L+ L           T +                ++ N 
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNL-----------TKITELE------------LSGNP 96

Query: 263 IPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314
           + ++        +  + L+S +   V P  +A L  LQVL LD N +  +I   L  LTN
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTN 152

Query: 315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
           L+ L + N + S   P  L   + L      DN ++   PL  
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLAS 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 68/281 (24%)

Query: 49  VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP 108
           V+   +   IPS   +  T   L L   +L  +      N    +S + +  +     + 
Sbjct: 18  VTCKDIQ-RIPSLPPSTQT---LKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLE 72

Query: 109 -DTFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGNNQISDTFP--SWLGTIPN 164
             +F   S++  I++ +      I    L     L+FL + N  +   FP  + + +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

Query: 165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQL 224
             +L +  N +   I         ++   + L NN FT  +   +F         N ++L
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF---------NGTKL 181

Query: 225 RYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTS 284
             +                                            L+ N++  VI   
Sbjct: 182 DAVY-------------------------------------------LNKNKYLTVIDKD 198

Query: 285 I-ANLK-GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
               +  G  +L++   ++   +PS    L +L+ L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 19/217 (8%)

Query: 17  LNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTVKNLVL 73
              L L    L +  S+     LP     + +Y+  + +L  ++ S    NL+ V ++ +
Sbjct: 33  TQTLKLIETHLRTIPSHAFSN-LPN---ISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEI 87

Query: 74  SHNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTIPD-TFIKE-SRLGVIDLSHNLFQG 129
            +      +        +   L  L +         PD T +       +++++ N +  
Sbjct: 88  RNTRNLTYIDP--DALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 130 RIPRSLVN--CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCR 187
            IP +     C++   L L NN  + +   +      L+ + L  NK+  +I +      
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 188 FSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQL 224
           +S   ++D+S    T  LPSK    L  +   NT  L
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 39/297 (13%), Positives = 81/297 (27%), Gaps = 87/297 (29%)

Query: 59  PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRL 117
            S  C  +  ++  ++  ++  + P            L L   +   TIP   F     +
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQRI-PS----LPPSTQTLKLIETHL-RTIPSHAFSNLPNI 57

Query: 118 GVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
             I +S ++   ++   S  N SK+  +++ N +        L  I          +   
Sbjct: 58  SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-------LTYID--------PDALK 102

Query: 177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236
            +            L  + + N       P  + +        +T     L+        
Sbjct: 103 EL----------PLLKFLGIFNTGLK-MFPDLTKV-------YSTDIFFILE-------- 136

Query: 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL-KGLQVLN 295
                                             I  +     +   +   L      L 
Sbjct: 137 ----------------------------------ITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 296 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE--FTFLEFFDVSDNYLT 350
           L NN     +     N T L+++ L+ N++   I +      ++     DVS   +T
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 67/373 (17%), Positives = 122/373 (32%), Gaps = 60/373 (16%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS 79
           ++ S+  LT       P  +PP    L L S NS++      I  L+ ++ L LSHN + 
Sbjct: 36  VDYSNRNLTH-----VPKDLPPRTKALSL-SQNSISELRMPDISFLSELRVLRLSHNRIR 89

Query: 80  GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV--N 137
             L   +  F+ +L  LD+  N     I       + L  +DLS N F   +P      N
Sbjct: 90  -SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGN 144

Query: 138 CSKLEFLDLGNNQI-SDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDL 196
            +KL FL L   +              +  +L L S    G   E       + LH++  
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 197 SNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR 256
            N+ F       S     ++  +   QL  ++       ++ T L        ++N   +
Sbjct: 205 PNSLF-------SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 257 MM-------------------TYNKIPDI-LTGII-------------------LSSNRF 277
            +                    Y  I ++ +T  I                   + +  F
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 278 DRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFT 337
                   +    + +  L  ++       C  + ++   L+ + N F+  + Q      
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 338 FLEFFDVSDNYLT 350
            L+   +  N L 
Sbjct: 378 RLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 73/364 (20%), Positives = 129/364 (35%), Gaps = 32/364 (8%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
           L  L LS       + L     +     +L LVS +   GE  S      TV +LV   N
Sbjct: 148 LTFLGLSAAKFRQLD-LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 77  NLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--- 133
           +L  V      N    L + +++ N+       TF+ E   G   L+  L          
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 134 ----SLVNCSKLEFLDLGNNQIS-----DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT 184
                      +E+L++ N  I+     + F      + +L +  +++  F     +   
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL--FSKEAL 324

Query: 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244
              F++++I  LS +  T  +         +   +N +Q     D +    Q  + L   
Sbjct: 325 YSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQ-NVFTDSVF---QGCSTLKRL 379

Query: 245 YDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR----VIPTSIANLKGLQVLNLDNNN 300
               L  N          +   ++ +       +         + A  + + VLNL +N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFA 360
           L G +  CL     ++ LDL NNR    IP+ +     L+  +V+ N L  ++P G    
Sbjct: 440 LTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG---- 491

Query: 361 TFDN 364
            FD 
Sbjct: 492 VFDR 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 58/348 (16%), Positives = 122/348 (35%), Gaps = 22/348 (6%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE--TILYLVSNNSLTGEIPSWICNLNTVKNLVLS 74
           L  L++SHN L +       +   P      L L  N+     +     NL  +  L LS
Sbjct: 102 LEYLDVSHNRLQN-------ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQGRIP 132
                 +    + +      +LDL   +  G   ++      + L ++   ++LF  ++ 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF---- 188
            S+     L+  ++  N  +        +       +L     +       +   F    
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 189 -SKLHIIDLSNNRFTGKLPSKSF-LCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYD 246
              +  +++ N   T ++  + F     A+K +    ++    + S    + +       
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA-LYSVFAEMNI 333

Query: 247 YSLIMN-SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ--G 303
             L ++ +    M     P   T +  + N F   +    + LK LQ L L  N L+   
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 304 HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-TFLEFFDVSDNYLT 350
            +     N+++LE+LD+S N  +     +   +   +   ++S N LT
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
           +N   LS +            P P   T L   + N  T  +      L  ++ L+L  N
Sbjct: 331 MNIKMLSISDTPF--IHMVCPPSPSSFTFLNF-TQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 77  NLSGVLPQCLGNFSD--ELSVLDLQGNNF-FGTIPDTFIKESRLGVIDLSHNLFQGRIPR 133
            L     +      +   L  LD+  N+        T      + V++LS N+  G + R
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDC-RFSKLH 192
            L    K++ LDL NN+I  + P  +  +  L  L + SN+   +   P     R + L 
Sbjct: 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV---PDGVFDRLTSLQ 500

Query: 193 IIDLSNNRF 201
            I L +N +
Sbjct: 501 YIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSN--NSLTGEIPSWICNL-NTVK 69
           +++ L  L L  N L +         +    + L  +    NSL        C    ++ 
Sbjct: 375 TLKRLQTLILQRNGLKN---FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
            L LS N L+G + +CL     ++ VLDL  N    +IP        L  ++++ N  + 
Sbjct: 432 VLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK- 486

Query: 130 RIPR-SLVNCSKLEFLDLGNN 149
            +P       + L+++ L +N
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +P     + LS N    +    I+ L  L+VL L +N ++           +LE LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQF 359
           NR    I         L   D+S N     +P+ K+F
Sbjct: 110 NRLQN-ISCC--PMASLRHLDLSFNDFD-VLPVCKEF 142

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 43/248 (17%), Positives = 83/248 (33%), Gaps = 16/248 (6%)

Query: 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
            + LS N         +   S+L  L L +N+I            +L  L +  N+   I
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 179 IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKI--VNTSQLRYLQDVISPYGQ 236
                + C  + L  +DLS N F      K F  L  +    ++ ++ R L  +   +  
Sbjct: 116 -----SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNL 296
           +S  L+    Y +       +   N    +L  +   ++ F   +  S+  L  LQ+ N+
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTT--VLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 297 DNNNLQGHIPSCL-------GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349
             N+                  L N+    +           Q      +E+ ++ +  +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 350 TGAIPLGK 357
           T  I   +
Sbjct: 289 TERIDREE 296

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 5e-12
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 10/174 (5%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
              K     +   M+ L+ L      L   + L+    V P          +    E   
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA---VDPMRAAYLDDLRSKFLLENSV 435

Query: 61  WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120
                  V+ L L+H +L+ +    L      ++ LDL  N     +P        L V+
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCH--LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD-TFPSWLGTIPNLNVLILRSN 173
             S N  +  +   + N  +L+ L L NN++        L + P L +L L+ N
Sbjct: 492 QASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
           L+      +    +  L  +  L+L +N L+  +P  L  L  LE L  S+N     +  
Sbjct: 448 LAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD- 502

Query: 332 QLVEFTFLEFFDVSDNYLT 350
            +     L+   + +N L 
Sbjct: 503 GVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 17/165 (10%)

Query: 10  LDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVK 69
           +DP          S  L                  +L+L ++  LT  +   +  L  V 
Sbjct: 414 VDPMRAAYLDDLRSKFL----LENSVLKMEYADVRVLHL-AHKDLT-VLCH-LEQLLLVT 466

Query: 70  NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
           +L LSHN L   LP  L      L VL    +N    +        RL  + L +N  Q 
Sbjct: 467 HLDLSHNRLR-ALPPALAALRC-LEVLQA-SDNALENVDG-VANLPRLQELLLCNNRLQQ 522

Query: 130 -RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI----PNLNVLI 169
               + LV+C +L  L+L  N +          +    P+++ ++
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 34/309 (11%), Positives = 81/309 (26%), Gaps = 65/309 (21%)

Query: 14  MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVL 73
           + +  + +    +L               E +     +   +  + S + +   ++ L  
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP 379

Query: 74  SHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR 133
            +      +   +      L  L  +            +   R   +D   + F      
Sbjct: 380 ENKWCLLTIILLM----RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 435

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
             +  + +  L L +  ++      L  +  +  L L  N+   +   P        L +
Sbjct: 436 LKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNR---LRALPPALAALRCLEV 490

Query: 194 IDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253
           +  S+N                  +   + L  LQ+                   L++ +
Sbjct: 491 LQASDNALE--------------NVDGVANLPRLQE-------------------LLLCN 517

Query: 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ---GHIPSCLG 310
                  N++        L              +   L +LNL  N+L    G       
Sbjct: 518 -------NRLQQSAAIQPLV-------------SCPRLVLLNLQGNSLCQEEGIQERLAE 557

Query: 311 NLTNLESLD 319
            L ++ S+ 
Sbjct: 558 MLPSVSSIL 566

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 49/357 (13%), Positives = 114/357 (31%), Gaps = 51/357 (14%)

Query: 14  MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVL 73
           +  L +L+  ++ +T    ++         T L   ++N++T  +   +     +  L  
Sbjct: 41  LATLTSLDCHNSSITDMTGIEK----LTGLTKLIC-TSNNIT-TLD--LSQNTNLTYLAC 92

Query: 74  SHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR 133
             N L+ +    L      L+ L+   N           +   L  ++ + N        
Sbjct: 93  DSNKLTNLDVTPLTK----LTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT---EI 142

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
            + + ++L  LD   N+        +     L  L    NK   +        +   L+ 
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS-----QNKLLNR 195

Query: 194 IDLSNNRFT----GKLPSKSFLCLDAMKI--VNTSQLRYLQDVISPYGQVSTDLISTYDY 247
           ++   N  T     +    +FL   + K+  ++ + L  L          S + ++  D 
Sbjct: 196 LNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFD-----CSVNPLTELDV 250

Query: 248 SLIMNSKGRMMTYNKIPDI-------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN 300
           S +            + +I       L        R  + +   + +   L +L+     
Sbjct: 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG 308

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
           +   +   L     L  L L+N   + ++   +   T L+     + ++     +GK
Sbjct: 309 IT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSSVGK 359

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 55/344 (15%), Positives = 109/344 (31%), Gaps = 45/344 (13%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNLVLSH 75
           L  L  + N +T+       L +     + YL   +N LT  +   +  L  +  L    
Sbjct: 66  LTKLICTSNNITT-------LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDT 115

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 135
           N L+ +           L+ L+   N     I       ++L  +D   N    ++   +
Sbjct: 116 NKLTKLDVSQNPL----LTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKLD--V 166

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195
              ++L  LD   N+I++   S       LN L   +N    +        +  +L  +D
Sbjct: 167 TPQTQLTTLDCSFNKITELDVSQN---KLLNRLNCDTNNITKL-----DLNQNIQLTFLD 218

Query: 196 LSNNRFT----GKLPSKSFLCLDAMKI--VNTSQLRYLQDVISPYGQVST-DLISTYDYS 248
            S+N+ T      L   ++       +  ++ S L  L  +      +   DL       
Sbjct: 219 CSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278

Query: 249 LIMNSKGRMMTYNKIPDI--LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306
                  R +    +     L  +   +     +    ++    L  L L+N  L   + 
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD 334

Query: 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
             + + T L+SL   N          + +   L     ++    
Sbjct: 335 --VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 47/304 (15%), Positives = 90/304 (29%), Gaps = 59/304 (19%)

Query: 47  YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT 106
            + +   +          L T+ +L   +++++ +    +   +  L+ L    NN   T
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLT-GLTKLICTSNNI-TT 78

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
           +     + + L  +    N         +   +KL +L+   N+++    S     P L 
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVSQN---PLLT 130

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
            L    N    I          ++L  +D   N+   KL            +   +QL  
Sbjct: 131 YLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKLD-----------VTPQTQLTT 174

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA 286
           L          S + I+  D S                  L  +   +N   ++    + 
Sbjct: 175 LD--------CSFNKITELDVSQNKL--------------LNRLNCDTNNITKL---DLN 209

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
               L  L+  +N L   I   +  LT L   D S N  +          + L       
Sbjct: 210 QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQ 263

Query: 347 NYLT 350
             L 
Sbjct: 264 TDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 41/355 (11%), Positives = 93/355 (26%), Gaps = 93/355 (26%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNL 71
               L  LN + N LT        + V     +  L    N    ++   +     +  L
Sbjct: 125 QNPLLTYLNCARNTLTE-------IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 72  VLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 131
             S N ++ +           L+ L+   NN              +  +DL+        
Sbjct: 176 DCSFNKITELDVSQNKL----LNRLNCDTNN--------------ITKLDLN-------- 209

Query: 132 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL 191
                   +L FLD  +N+++      +  +  L       N    +          SKL
Sbjct: 210 -----QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL-----DVSTLSKL 256

Query: 192 HIIDLSNNRFT----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY 247
             +                   +   +  + +    + +   +                 
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD------------- 303

Query: 248 SLIMNSKGRMMTYNKIPDI-------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN 300
                          I ++       L  + L++     +    +++   L+ L+  N +
Sbjct: 304 ----------CQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAH 350

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ-----QLVEFTFLEFFDVSDNYLT 350
           +Q    S +G +  L +   +  +      +      L      +  D   N + 
Sbjct: 351 IQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 43/255 (16%)

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
            +  +        +    Q     S    + L  LD  N+ I+D   + +  +  L  LI
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLI 70

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD 229
             SN    +        + + L  +   +N+ T  L            +   ++L YL  
Sbjct: 71  CTSNNITTL-----DLSQNTNLTYLACDSNKLT-NLD-----------VTPLTKLTYL-- 111

Query: 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-------LTGIILSSNRFDRVIP 282
                    T+ ++  D S            N + +I       LT +    N+  ++  
Sbjct: 112 ------NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK--KITK 163

Query: 283 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342
             +     L  L+   N +   +   +     L  L+   N  + ++   L +   L F 
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 343 DVSDNYLTGAIPLGK 357
           D S N LT  I +  
Sbjct: 218 DCSSNKLT-EIDVTP 231

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 45/321 (14%), Positives = 94/321 (29%), Gaps = 43/321 (13%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
           L  LN   N LT  +  Q PL      T L   + N+LT EI   + +   +  L    N
Sbjct: 108 LTYLNCDTNKLTKLDVSQNPLL-----TYLNC-ARNTLT-EID--VSHNTQLTELDCHLN 158

Query: 77  NLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 136
                L   +   + +L+ LD   N     +     +   L  ++   N    ++   L 
Sbjct: 159 KKITKLD--VTPQT-QLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNIT-KLD--LN 209

Query: 137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDL 196
              +L FLD  +N+++      +  +  L       N    +          SKL  +  
Sbjct: 210 QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHC 261

Query: 197 SNNRFT----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252
                            +   +  + +    + +   +           I+  D S    
Sbjct: 262 IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD--CQAAGITELDLSQNPK 319

Query: 253 SKGRMMTYNKIPDI-------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
                +   ++ ++       L  +   +        +S+  +  L             +
Sbjct: 320 LVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI-TM 376

Query: 306 PSCLGNLTNLESLDLSNNRFS 326
           P       +L ++ +S +   
Sbjct: 377 PKETLTNNSL-TIAVSPDLLD 396

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTVKNLVLSHNNLSGVLPQCL 86
           S   L   P  +P    +L L S+N+L+     W    L  + +L+LSHN+L+ +     
Sbjct: 26  SKQQLPNVPQSLPSYTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--- 81

Query: 87  GNFSD--ELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLE 142
             F     L  LDL  N+   T+    F     L V+ L +N     + R +  + ++L+
Sbjct: 82  EAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 143 FLDLGNNQIS----DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN 198
            L L  NQIS    +        +P L +L L SNK   +             + + L N
Sbjct: 140 KLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 199 NRFT 202
           N   
Sbjct: 199 NPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 46/178 (25%), Positives = 65/178 (36%), Gaps = 35/178 (19%)

Query: 10  LDPSMQYLNALNLSHNLLTS---------SNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
           L      L+   LSHN L+            NL            L L S+N L   I S
Sbjct: 37  LPSYTALLD---LSHNNLSRLRAEWTPTRLTNLH----------SLLL-SHNHLN-FISS 81

Query: 61  WI-CNLNTVKNLVLSHNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTIPDTFIKESRL 117
                +  ++ L LS N+L   L +    FSD   L VL L  N+      + F   ++L
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDE--FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138

Query: 118 GVIDLSHNLFQGRIP----RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR 171
             + LS N    R P    +      KL  LDL +N++     + L  +P      L 
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 37/191 (19%), Positives = 53/191 (27%), Gaps = 60/191 (31%)

Query: 141 LEFLDLGNNQISDTFPSW-LGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
              LDL +N +S     W    + NL+ L+L  N    I            L  +DLS+N
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--SSEAFVPVPNLRYLDLSSN 98

Query: 200 RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMT 259
                L    F         +   L  L                                
Sbjct: 99  HLH-TLDEFLF--------SDLQALEVL-------------------------------- 117

Query: 260 YNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP----SCLGNLTNL 315
                      +L +N    V   +  ++  LQ L L  N +    P         L  L
Sbjct: 118 -----------LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL 165

Query: 316 ESLDLSNNRFS 326
             LDLS+N+  
Sbjct: 166 MLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 258 MTYNKIPDI-----------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306
           +++N +  +           L  ++LS N  + +   +   +  L+ L+L +N+L     
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105

Query: 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTS 366
               +L  LE L L NN           +   L+   +S N ++   P+        + +
Sbjct: 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE----LIKDGN 160

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 52/290 (17%), Positives = 95/290 (32%), Gaps = 65/290 (22%)

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
              +     +  +       F+ E    +L+  +   T   T  + + +  I  +++  +
Sbjct: 5   SETITVPTPIKQIFS--DDAFA-ETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK 59

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
             +   +     +  L L  N+++D  P  L  + NL  L L  NK    +K+  +    
Sbjct: 60  -SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDL 111

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248
            KL  + L +N  +               I     L  L+                   S
Sbjct: 112 KKLKSLSLEHNGIS--------------DINGLVHLPQLE-------------------S 138

Query: 249 LIMNSKGRMMTYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN 300
           L + +       NKI DI        L  + L  N+   ++P  +A L  LQ L L  N+
Sbjct: 139 LYLGN-------NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189

Query: 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           +   +   L  L NL+ L+L +     +                +D  L 
Sbjct: 190 IS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 75/277 (27%)

Query: 49  VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP 108
           +   S+T  +      LN++  ++ +++++  V  Q +      ++ L L GN      P
Sbjct: 31  LKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLP-NVTKLFLNGNKLTDIKP 85

Query: 109 DTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
              +K   LG + L  N    ++    SL +  KL+ L L +N ISD     L  +P L 
Sbjct: 86  LANLKN--LGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLE 137

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
            L L +NK    I +     R +KL  + L +N+ +               IV  + L  
Sbjct: 138 SLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS--------------DIVPLAGLTK 179

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA 286
           LQ++                           ++ N I D+                 ++A
Sbjct: 180 LQNL--------------------------YLSKNHISDL----------------RALA 197

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
            LK L VL L +        +   NL    ++  ++ 
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 20/190 (10%)

Query: 13  SMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLV 72
            +  ++ +  +++ + S   +Q    V    T L+L + N LT +I   + NL  +  L 
Sbjct: 44  ELNSIDQIIANNSDIKSVQGIQYLPNV----TKLFL-NGNKLT-DIKP-LANLKNLGWLF 96

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
           L  N +  +    L +   +L  L L+ N    +  +  +   +L  + L +N  +    
Sbjct: 97  LDENKVKDLSS--LKDLK-KLKSLSLEHNGI--SDINGLVHLPQLESLYLGNN--KITDI 149

Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLH 192
             L   +KL+ L L +NQISD  P  L  +  L  L L  N     I + R       L 
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLD 203

Query: 193 IIDLSNNRFT 202
           +++L +    
Sbjct: 204 VLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 17  LNALNLSHNLLTSSNNLQG--PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLS 74
           L  L L  N +   ++L+    L        L L  +N ++ +I   + +L  +++L L 
Sbjct: 92  LGWLFLDENKVKDLSSLKDLKKL------KSLSL-EHNGIS-DING-LVHLPQLESLYLG 142

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 134
           +N ++ +    L   + +L  L L+ N    +        ++L  + LS N       R+
Sbjct: 143 NNKITDITV--LSRLT-KLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN--HISDLRA 195

Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
           L     L+ L+L + +  +   +    +   N +       
Sbjct: 196 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 45/224 (20%)

Query: 13  SMQYLNALNLSHNLLTSS------NNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NL 65
               L  + +S N +         +NL       P    + +   N+L   I      NL
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNL-------PKLHEIRIEKANNLL-YINPEAFQNL 103

Query: 66  NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD-TFIK-ESRLGVIDLS 123
             ++ L++S+  +   LP      S +  +LD+Q N    TI   +F+       ++ L+
Sbjct: 104 PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR 183
            N  Q     +       E     NN +                  L ++ F+G      
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLE----------------ELPNDVFHGA----- 201

Query: 184 TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
                S   I+D+S  R    LPS     L  ++  +T  L+ L
Sbjct: 202 -----SGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 34/267 (12%), Positives = 74/267 (27%), Gaps = 37/267 (13%)

Query: 96  LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 155
              Q +     IP    + +    +       +     +      LE +++  N + +  
Sbjct: 14  FLCQESKV-TEIPSDLPRNAI--ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 156 PSWLGTIPNLNVL----ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
            +      NL  L    I ++N    I   P        L  + +SN      LP    +
Sbjct: 71  EA--DVFSNLPKLHEIRIEKANNLLYI--NPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 212 CLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI----- 266
                 +++      +         +  +        L   S    +  N I +I     
Sbjct: 126 HSLQKVLLDIQDNINIHT-------IERNSFV----GLSFESVILWLNKNGIQEIHNSAF 174

Query: 267 -----LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 321
                    +  +N  + +         G  +L++    +       L NL  L +    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 322 NNRFSGQIPQQLVEFTFLEFFDVSDNY 348
           N +   ++P  L +   L    ++   
Sbjct: 235 NLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLS 321
           +P     +     +   +   + +    L+ + +  N++   I +    NL  L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 322 N-NRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
             N      P+       L++  +S+  + 
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 17  LNALNLSHNLLTS-SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNL-NTVKNLVLS 74
           L  L +S+  +    +  +        + +L +  N ++     +    L      L L+
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSL---QKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 75  HNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPR 133
            N +  +           L  L+L  NN    +P D F   S   ++D+S       +P 
Sbjct: 163 KNGIQEIHNSAFNGTQ--LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219

Query: 134 ---------------------SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168
                                +L     L    L        F +W   I  L+ +
Sbjct: 220 YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 15/163 (9%)

Query: 14  MQYLNALNLSHNLLTSSNNLQG--PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNL 71
           M  L  + L++  +T    ++    +        L + +N   T   P  I  L+ ++ L
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNI------KDLTI-NNIHATNYNP--ISGLSNLERL 93

Query: 72  VLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 131
            +   +++      L   +  L++LD+  +    +I        ++  IDLS+N     I
Sbjct: 94  RIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 132 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
              L    +L+ L++  + + D     +   P LN L   S  
Sbjct: 153 M-PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 260 YNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 311
              + D+        +  + +++       P  I+ L  L+ L +   ++       L  
Sbjct: 53  NINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG 110

Query: 312 LTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
           LT+L  LD+S++     I  ++     +   D+S N
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
            +N++  + L++ N++ +    +      +  L +   +   T  +     S L  + + 
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAH-NIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR 183
                     +L   + L  LD+ ++   D+  + + T+P +N + L  N     I +  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AITDIM 153

Query: 184 TDCRFSKLHIIDLSNNRFT 202
                 +L  +++  +   
Sbjct: 154 PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           LT + +S +  D  I T I  L  +  ++L  N     I   L  L  L+SL++  +   
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

Query: 327 GQIPQQLVEFTFLEFFDVSDNYLTG 351
                 + +F  L         + G
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 263 IPD-ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 321
           IPD      +            + A +  L  + L N N+   +   +    N++ L ++
Sbjct: 17  IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTIN 74

Query: 322 NNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354
           N   +   P  +   + LE   +    +T    
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKI 105

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 44/261 (16%), Positives = 74/261 (28%), Gaps = 65/261 (24%)

Query: 63  CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122
            +   V        NL+ + P    +   + ++L L  N  +     T +  +RL  ++L
Sbjct: 10  ASHLEVN---CDKRNLTAL-PP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEP 182
                +    +       L  LDL +NQ+  + P    T+P L VL +  N+   +    
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL--PL 117

Query: 183 RTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI 242
                  +L  + L  N     LP                +L  L               
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPT--------PKLEKLS-------------- 154

Query: 243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ 302
                                        L++N    +    +  L+ L  L L  N+L 
Sbjct: 155 -----------------------------LANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 303 GHIPSCLGNLTNLESLDLSNN 323
             IP        L    L  N
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 50/243 (20%), Positives = 80/243 (32%), Gaps = 62/243 (25%)

Query: 83  PQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 141
           P C  +       ++    N    +P D     + L    LS NL       +L+  ++L
Sbjct: 2   PICEVSKVASHLEVNCDKRNL-TALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRL 57

Query: 142 EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201
             L+L   ++  T     GT+P L  L L  N+   +   P        L ++D+S NR 
Sbjct: 58  TQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRL 112

Query: 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYN 261
           T  LP  +   L         +L+ L                              +  N
Sbjct: 113 T-SLPLGALRGL--------GELQELY-----------------------------LKGN 134

Query: 262 KIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 321
           ++  +  G+                    L+ L+L NNNL       L  L NL++L L 
Sbjct: 135 ELKTLPPGL------LTP--------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 322 NNR 324
            N 
Sbjct: 181 ENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +P   T + LS N        ++     L  LNLD   L   +    G L  L +LDLS+
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSH 86

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
           N+    +P        L   DVS N LT ++PLG        
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG----ALRG 122

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 49/210 (23%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN 76
              +N     LT+      P  +P   TIL+L S N L     + +     +  L L   
Sbjct: 12  HLEVNCDKRNLTAL-----PPDLPKDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 77  NLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-- 132
            L       L        L  LDL  N    ++P        L V+D+S N     +P  
Sbjct: 66  EL-----TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 133 --RSLVN---------------------CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
             R L                         KLE L L NN +++     L  + NL+ L+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
           L+ N  Y I   P+       L    L  N
Sbjct: 179 LQENSLYTI---PKGFFGSHLLPFAFLHGN 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 11  DPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNN--SLTGEIPSWICNLNTV 68
           DP +      NL    +T   + +    V          ++N  SL G     +     +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGV----QNFNGDNSNIQSLAG-----MQFFTNL 65

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLF 127
           K L LSHN +S + P  L + + +L  L +  N     + +   I  + L  + L +N  
Sbjct: 66  KELHLSHNQISDLSP--LKDLT-KLEELSVNRNR----LKNLNGIPSACLSRLFLDNN-- 116

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCR 187
           + R   SL++   LE L + NN++       LG +  L VL L  N+    I       R
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE----ITNTGGLTR 170

Query: 188 FSKLHIIDLSNNRFT 202
             K++ IDL+  +  
Sbjct: 171 LKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 48/280 (17%), Positives = 90/280 (32%), Gaps = 39/280 (13%)

Query: 62  ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121
              L       L   +++ ++       S  +   +   +N            + L  + 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELS-GVQNFNGDNSNI--QSLAGMQFFTNLKELH 69

Query: 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKE 181
           LSHN  Q      L + +KLE L +  N++ +           L+ L L +N+    +++
Sbjct: 70  LSHN--QISDLSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNE----LRD 120

Query: 182 PRTDCRFSKLHIIDLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQ--DVISPY 234
             +      L I+ + NN+       G L     L L   +I NT  L  L+  + I   
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180

Query: 235 GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVL 294
           GQ   +    Y   L +         N + D   G  +S        P  I+N       
Sbjct: 181 GQKCVNEPVKYQPELYIT--------NTVKD-PDGRWIS--------PYYISNGGSYVDG 223

Query: 295 NLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLV 334
            +       +        +   ++  +   F G + Q + 
Sbjct: 224 CVLWELPV-YTDEVSYKFSEYINVGETEAIFDGTVTQPIK 262

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 65/222 (29%)

Query: 146 LGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL 205
                I+  FP     + N     L        + +  +    S +   +  N+      
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQS----VTDLVSQKELSGVQNFNGDNSNIQ--- 54

Query: 206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPD 265
                       +        L+++                           +++N+I D
Sbjct: 55  -----------SLAGMQFFTNLKELH--------------------------LSHNQISD 77

Query: 266 I--------LTGIILSSNRFDRVIPTSIANLKG--LQVLNLDNNNLQGHIPSCLGNLTNL 315
           +        L  + ++ NR       ++  +    L  L LDNN L+      L +L NL
Sbjct: 78  LSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNL 130

Query: 316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
           E L + NN+    +   L   + LE  D+  N +T    L +
Sbjct: 131 EILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLTR 170

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 65/367 (17%), Positives = 112/367 (30%), Gaps = 74/367 (20%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGE----IPSWICNLNTVKNLV 72
           + +L++    L S       LP+     ++ L  +  LT      I S +     +  L 
Sbjct: 5   IQSLDIQCEEL-SDARWAELLPLLQQCQVVRL-DDCGLTEARCKDISSALRVNPALAELN 62

Query: 73  LSHNNL--SGV--LPQCLGNFSDELSVLDLQGNNF----FGTIPDTFIKESRLGVIDLSH 124
           L  N L   GV  + Q L   S ++  L LQ         G +  T      L  + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 125 NLFQGRIPRSLV-----NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           NL      + L         +LE L L    +S      L ++       LR+       
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-------LRAKP----- 170

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
                         + +SNN             L      +  QL  L+        + +
Sbjct: 171 ----------DFKELTVSNNDIN----EAGVRVLCQGLKDSPCQLEALK--------LES 208

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD-----RVIPTSIANLKGLQVL 294
             +++ +   +      ++        L  + L SN+        + P  +     L+ L
Sbjct: 209 CGVTSDNCRDL----CGIVASKAS---LRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 295 NLDNNNLQ----GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-----TFLEFFDVS 345
            +    +     G +   L    +L+ L L+ N    +  + L E        LE   V 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 346 DNYLTGA 352
               T A
Sbjct: 322 SCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 66/374 (17%), Positives = 116/374 (31%), Gaps = 76/374 (20%)

Query: 13  SMQYLNALNLSHNLLTSS--NNLQGPLPVPPPE-TILYLVSNNSLTGE----IPSWICNL 65
               L  LNL  N L     + +   L  P  +   L L  N  LTG     + S +  L
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL-QNCCLTGAGCGVLSSTLRTL 112

Query: 66  NTVKNLVLSHNNL--SGV--LPQCLGNFSDELSVLDLQGNNF----FGTIPDTFIKESRL 117
            T++ L LS N L  +G+  L + L +    L  L L+  +        +      +   
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 118 GVIDLSHNLFQGRIPRSL-----VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS 172
             + +S+N       R L      +  +LE L L +  ++      L         I+ S
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-------IVAS 225

Query: 173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVIS 232
                             L  + L +N+        + LC   +   ++  LR L     
Sbjct: 226 KA---------------SLRELALGSNKLGDV--GMAELC-PGLLHPSSR-LRTLWIWEC 266

Query: 233 PYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD-----RVIPTSIAN 287
                    +      L                 L  + L+ N         +  T +  
Sbjct: 267 GITAKGCGDLCR---VLRAKES------------LKELSLAGNELGDEGARLLCETLLEP 311

Query: 288 LKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-----TF 338
              L+ L + + +       H  S L     L  L +SNNR      ++L +      + 
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 339 LEFFDVSDNYLTGA 352
           L    ++D  ++ +
Sbjct: 372 LRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 73/379 (19%), Positives = 122/379 (32%), Gaps = 90/379 (23%)

Query: 13  SMQYLNALNLSHNLLTSSNN---LQGPLPVPPPETILYLVSNNSLTGE----IPSWICNL 65
           ++  L  L+LS NLL  +      +G L        L L    SL+      + S +   
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL-EYCSLSAASCEPLASVLRAK 169

Query: 66  NTVKNLVLSHNNLS--GV--LPQCLGNFSDELSVLDLQGNNF----FGTIPDTFIKESRL 117
              K L +S+N+++  GV  L Q L +   +L  L L+           +      ++ L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 118 GVIDLSHNLFQGR-----IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI----PNLNVL 168
             + L  N           P  L   S+L  L +    I+      L  +     +L  L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 169 ILRSNKF--YGI------IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
            L  N+    G       + EP       +L  + + +  FT    +       ++   N
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGC-----QLESLWVKSCSFT----AACCSHFSSVLAQN 340

Query: 221 TSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV 280
              L  LQ                             ++ N++ D   G+        + 
Sbjct: 341 RF-LLELQ-----------------------------ISNNRLED--AGVRELCQGLGQ- 367

Query: 281 IPTSIANLKGLQVLNLDNNNLQ----GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF 336
                     L+VL L + ++       + + L    +L  LDLSNN        QLVE 
Sbjct: 368 ------PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 337 -----TFLEFFDVSDNYLT 350
                  LE   + D Y +
Sbjct: 422 VRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 53/293 (18%)

Query: 90  SDELSVLDLQGNNFFGTIPDTFIKE-----SRLGVIDLSHNLFQGR----IPRSLVNCSK 140
           S ++  LD+Q       + D    E      +  V+ L            I  +L     
Sbjct: 2   SLDIQSLDIQCEE----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 141 LEFLDLGNNQISDTFPSWLGTI-----PNLNVLILRSNKF--YGIIKEPRTDCRFSKLHI 193
           L  L+L +N++ D     +          +  L L++      G      T      L  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 194 IDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253
           + LS+N             L    +    +L  L        Q+    +S      +   
Sbjct: 118 LHLSDNLLG----DAGLQLLCEGLLDPQCRLEKL--------QLEYCSLSAASCEPL--- 162

Query: 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA-----NLKGLQVLNLDNNNLQ----GH 304
              ++           + +S+N  +      +      +   L+ L L++  +       
Sbjct: 163 -ASVLRAKP---DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-----TFLEFFDVSDNYLTGA 352
           +   + +  +L  L L +N+       +L        + L    + +  +T  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 57/341 (16%), Positives = 104/341 (30%), Gaps = 76/341 (22%)

Query: 50  SNNSLTGE----IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF---SDELSVLDLQGNN 102
             +++T E    + + +   ++VK +VLS N +     + L        +L + +   + 
Sbjct: 12  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-SDI 70

Query: 103 FFGTIPDTFIKE-----------SRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLG 147
           F G + D   +             +L  + LS N F       +   L   + LE L L 
Sbjct: 71  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130

Query: 148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS 207
           NN +     + +          L+        K          L  I    NR      +
Sbjct: 131 NNGLGPQAGAKIAR-------ALQELAVNKKAKNAPP------LRSIICGRNRLE----N 173

Query: 208 KSFLCLDAMKIVNTSQLRYL---QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP 264
            S          +   L  +   Q+ I P G     L+      L    +          
Sbjct: 174 GSMKEWAKTFQSHRL-LHTVKMVQNGIRPEG--IEHLLLE---GLAYCQE---------- 217

Query: 265 DILTGIILSSNRFD----RVIPTSIANLKGLQVLNLDNNNLQG----HIPSCLGNLTN-- 314
             L  + L  N F       +  ++ +   L+ L L++  L       +      L N  
Sbjct: 218 --LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275

Query: 315 LESLDLSNNRFSGQIPQQLVE-----FTFLEFFDVSDNYLT 350
           L++L L  N       + L          L F +++ N  +
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 35/268 (13%), Positives = 71/268 (26%), Gaps = 62/268 (23%)

Query: 117 LGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDT----FPSWLGTIPNLNVL 168
           +    L  +         +   L+    ++ + L  N I           + +  +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 169 ILRSNKFYGIIKEPRTDCRF--------SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
                    +  E     R          KLH + LS+N F       +   L      +
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG----PTAQEPLIDFLSKH 121

Query: 221 TSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV 280
           T  L +L                              +  N +     G  ++    +  
Sbjct: 122 TP-LEHLY-----------------------------LHNNGLGPQ-AGAKIARALQELA 150

Query: 281 IPTSIANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNRFSGQ-----IPQ 331
           +     N   L+ +    N L+            +   L ++ +  N    +     + +
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 332 QLVEFTFLEFFDVSDNYLT--GAIPLGK 357
            L     L+  D+ DN  T  G+  L  
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAI 238

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 56/223 (25%)

Query: 13  SMQYLNALNLSHN------------LLTSSNNLQGPLPVPPPETILYLVSN--NSLTGEI 58
               +  + LS N             + S  +L           I          +  EI
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDL----------EIAEFSDIFTGRVKDEI 79

Query: 59  P-------SWICNLNTVKNLVLSHNNLSGVLPQCLGNF---SDELSVLDLQGNNFFGTIP 108
           P         +     +  + LS N       + L +F      L  L L  N       
Sbjct: 80  PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL----- 134

Query: 109 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD----TFPSWLGTIPN 164
                        ++  L +  + +   N   L  +  G N++ +     +     +   
Sbjct: 135 ------GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 165 LNVLILRSNKFY-----GIIKEPRTDCRFSKLHIIDLSNNRFT 202
           L+ + +  N         ++ E    C   +L ++DL +N FT
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFT 229

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 52/214 (24%)

Query: 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL-GTIPNLNVLILRSNKFYGII 179
           DL  N       ++    +KL  L L +N++  T P+ +   + NL  L +  NK   + 
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL- 100

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
                  +   L  + L  N+    LP + F  L        ++L YL            
Sbjct: 101 -PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSL--------TKLTYLS----------- 139

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDI----------LTGIILSSNRFDRVIPTSIANLK 289
                             + YN++  +          L  + L +N+  RV   +   L 
Sbjct: 140 ------------------LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
            L+ L LDNN L+        +L  L+ L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           IP     + L SN+   +   +   L  L++L L++N LQ         L NLE+L +++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 323 NRFS---GQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
           N+       +  QLV    L    +  N L  ++P       FD+
Sbjct: 95  NKLQALPIGVFDQLVNLAEL---RLDRNQLK-SLPPR----VFDS 131

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 267 LTGIILSSNRFDRVIPT-SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 325
           LT + + + +  + +    +  L  L+ L +  + L+   P        L  L+LS N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 326 SGQIPQQLVEFTFLEFFDVSDNYLT 350
              +  + V+   L+   +S N L 
Sbjct: 93  E-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 274 SNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNRFSGQIPQQ 332
           +          +   + L  L ++N     H+    L  L  L +L +  +      P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 333 LVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTS-----FDGNSGLC 374
                 L   ++S N L  ++       T    S       GN   C
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWK----TVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTI 107
           + +    +    +     +  L + +      L     +     EL  L +  +      
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVA 72

Query: 108 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS-DTFPSWL 159
           PD F    RL  ++LS N  +  +    V    L+ L L  N +       WL
Sbjct: 73  PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSW-LGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
                L     L  L + N Q         L  +  L  L +  +    +   P      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFT 79

Query: 189 SKLHIIDLSNNRFTGKLPSKSF 210
            +L  ++LS N     L  K+ 
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTV 100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 91/542 (16%), Positives = 151/542 (27%), Gaps = 188/542 (34%)

Query: 7   KWLL--------DPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEI 58
           K+L+         PSM          + L + N +     V   +  L          ++
Sbjct: 92  KFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYL----------KL 140

Query: 59  PSWICNLNTVKNLVLSHNNL-SG--VL---------PQC----------LGNFSDELSVL 96
              +  L   KN+++    L SG   +          QC          L N +   +VL
Sbjct: 141 RQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 97  DLQGNNFFGTI-PDTFIKESRLGVIDLSHNLFQGRIPR-----SLVNCSKLEFLD-LGNN 149
           ++        I P+   +      I L  +  Q  + R        NC  L  L  + N 
Sbjct: 200 EML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNA 256

Query: 150 QISDTFPSWLGTIPNLN--VLIL-RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206
           +  + F        NL+  +L+  R  +    +    T    + + +   S    T    
Sbjct: 257 KAWNAF--------NLSCKILLTTRFKQVTDFLSAATT----THISLDHHSMT-LT-PDE 302

Query: 207 SKSFL--CLDAMKIVNTSQLRYLQDVISPY-----GQVSTDLISTYDYSLIMNSKGRMMT 259
            KS L   LD         L       +P       +   D ++T+D         + + 
Sbjct: 303 VKSLLLKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-------KHVN 351

Query: 260 YNKIPDILTGII--LSSN----RFDRV--------IPTS----------------IAN-L 288
            +K+  I+   +  L        FDR+        IPT                 + N L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-FTFLEFFD---- 343
               ++          IPS       LE      N +   + + +V+ +   + FD    
Sbjct: 412 HKYSLVEKQPKESTISIPSIY-----LELKVKLENEY--ALHRSIVDHYNIPKTFDSDDL 464

Query: 344 ---VSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEES 400
                D Y          F +             G  L K  E  E             +
Sbjct: 465 IPPYLDQY----------FYSH-----------IGHHL-KNIEHPE-----------RMT 491

Query: 401 LFSGA---FDW---KIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGIR 454
           LF      F +   KI     A      +              L+ L  QQ+   K  I 
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSI--------------LNTL--QQLKFYKPYIC 535

Query: 455 RN 456
            N
Sbjct: 536 DN 537

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 11/153 (7%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSD--ELSVLDLQGNNFFGTI 107
           SN  L  +IP  I        L L++N  + +     G F    +L  ++   NN    I
Sbjct: 19  SNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFS-NNKITDI 72

Query: 108 PD-TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
            +  F   S +  I L+ N  +    +       L+ L L +N+I+         + ++ 
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
           +L L  N+   +   P        L  ++L  N
Sbjct: 133 LLSLYDNQITTV--APGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           L  I  S+N+   +   +     G+  + L +N L+         L +L++L L +N   
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--- 115

Query: 327 GQIPQQLVEFTF-----LEFFDVSDNYLTGAIPLGKQFATFDN 364
            +I   +   +F     +    + DN +T  +  G     FD 
Sbjct: 116 -RI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG----AFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 55/181 (30%)

Query: 144 LDLGNNQISDTFPS-WLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202
           L L NN+ +    +     +P L  +   +NK   I  E       S ++ I L++NR  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI--EEGAFEGASGVNEILLTSNRLE 94

Query: 203 GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNK 262
             +  K F  L          L+ L                             M+  N+
Sbjct: 95  N-VQHKMFKGL--------ESLKTL-----------------------------MLRSNR 116

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           I  +          F          L  +++L+L +N +    P     L +L +L+L  
Sbjct: 117 ITCVGNDS------FI--------GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 323 N 323
           N
Sbjct: 163 N 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 13/166 (7%)

Query: 21  NLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG 80
               + +      +  +     +  L+      +  ++ + +  L   K+L LS NN+  
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELHG-MIPPIE-KMDATLSTLKACKHLALSTNNIEK 62

Query: 81  VLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--SLVNC 138
           +    L      L +L L  N     I +       L  + +S+N    +I     +   
Sbjct: 63  I--SSLSGME-NLRILSLGRNLI-KKIENLDAVADTLEELWISYN----QIASLSGIEKL 114

Query: 139 SKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEPR 183
             L  L + NN+I++      L  +  L  L+L  N  Y   KE  
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
           ++  +L      + L L  N I     S L  + NL +L L  N    I K    D    
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNL---IKKIENLDAVAD 93

Query: 190 KLHIIDLSNNRFT-----GKLPSKSFLCLDAMKIVNTSQLRYLQD 229
            L  + +S N+        KL +   L +   KI N  ++  L  
Sbjct: 94  TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 281 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLE 340
           +  +++ LK  + L L  NN++  I S L  + NL  L L  N    +I         LE
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 341 FFDVSDNYLT 350
              +S N + 
Sbjct: 97  ELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 261 NKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL 312
           N I  I        L  + L  N   + I    A    L+ L +  N +   + S +  L
Sbjct: 58  NNIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIA-SL-SGIEKL 114

Query: 313 TNLESLDLSNNRFS--GQIPQQLVEFTFLEFFDVSDN 347
            NL  L +SNN+ +  G+I  +L     LE   ++ N
Sbjct: 115 VNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 64  NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123
               V+ LVL +   +    + L      L  L L              K  +L  ++LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSN 173
            N   G +         L  L+L  N++ D      L  +  L  L L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 261 NKIPDILTGIILSSNRFDRV-IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 319
           N+ P  +  ++L + + +   I    A    L+ L+L N  L   + S L  L  L+ L+
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLE 77

Query: 320 LSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           LS NR  G +     +   L   ++S N L 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 40  PPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSD--ELSVLD 97
           P     L L +  S  G+I         ++ L L +  L       + N     +L  L+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLE 77

Query: 98  LQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFP 156
           L  N  FG +     K   L  ++LS N  +       L     L+ LDL N ++++   
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 157 SW---LGTIPNLNVL 168
                   +P L  L
Sbjct: 138 YRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 95  VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
           VLD   +N  G I     +   L  + L +      +  +L    KL+ L+L  N+I   
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGG 86

Query: 155 FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
                  +PNL  L L  NK    I       +   L  +DL N 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326
           L  + L +     V  +++  L  L+ L L  N + G +      L NL  L+LS N+  
Sbjct: 51  LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 327 G-QIPQQLVEFTFLEFFDVSDN 347
                + L +   L+  D+ + 
Sbjct: 109 DISTLEPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 40  PPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSD--ELSVLD 97
           P     L L ++ S  G++         ++ L   +  L+      + N     +L  L+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLE 70

Query: 98  LQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF- 155
           L  N   G +     K   L  ++LS N  +       L     L+ LDL N ++++   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 156 --PSWLGTIPNLNVL 168
              +    +P L  L
Sbjct: 131 YRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 324
           + L  +   +     +   ++  L  L+ L L +N + G +        NL  L+LS N+
Sbjct: 42  EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 325 FSG-QIPQQLVEFTFLEFFDVSDN 347
                  + L +   L+  D+ + 
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 261 NKIPDILTGIILSSNRFDRV-IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 319
           N+ P  +  ++L ++R +   +       + L+ L+  N  L   I + L  L  L+ L+
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLE 70

Query: 320 LSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
           LS+NR SG +     +   L   ++S N + 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 95  VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
           VLD   +N  G +     +   L  +   +      I  +L   +KL+ L+L +N++S  
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGG 79

Query: 155 FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
                   PNL  L L  NK    +       +   L  +DL N 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNC 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTVKNLVLSHNNLSGVLPQCL 86
               L   P  +P   T + L   N++   IP         ++ + LS+N +S + P   
Sbjct: 19  RGKGLTEIPTNLPETITEIRL-EQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAP--- 73

Query: 87  GNFSD--ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEF 143
             F     L+ L L GN         F     L ++ L+ N     +   +  +   L  
Sbjct: 74  DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNL 132

Query: 144 LDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
           L L +N++          +  +  + L  N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +P+ +T I L  N    + P + +  K L+ ++L NN +    P     L +L SL L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
           N+ +            L+   ++ N +   + +      F +
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVD----AFQD 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 51/173 (29%)

Query: 162 IP-NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
           +P  +  + L  N    I   P     + KL  IDLSNN+ + +L   +F  L       
Sbjct: 30  LPETITEIRLEQNTIKVI--PPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGL------- 79

Query: 221 TSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI----------LTGI 270
              L  L                              +  NKI ++          L  +
Sbjct: 80  -RSLNSLV-----------------------------LYGNKITELPKSLFEGLFSLQLL 109

Query: 271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323
           +L++N+ + +   +  +L  L +L+L +N LQ         L  ++++ L+ N
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 92  ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNN 149
               LDL+G      I +      +   ID S N     I +        +L+ L + NN
Sbjct: 20  RDRELDLRGYKI-PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNN 74

Query: 150 QISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRT-DC--RFSKLHIIDLSNNRFT 202
           +I          +P+L  LIL +N     + E    D       L  + +  N  T
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNS----LVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 261 NKIPDI---------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 311
            KIP I            I  S N   ++       L+ L+ L ++NN +          
Sbjct: 29  YKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86

Query: 312 LTNLESLDLSNNRFSG-QIPQQLVEFTFLEFFDVSDN 347
           L +L  L L+NN          L     L +  +  N
Sbjct: 87  LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 86/207 (41%)

Query: 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
           ++ L+  L + +      N  +   LDL   +I          I NL             
Sbjct: 1   MVKLTAELIE-QAA-QYTNAVRDRELDLRGYKIPV--------IENLGAT---------- 40

Query: 179 IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVS 238
                      +   ID S+N                 K+     LR L+          
Sbjct: 41  ---------LDQFDAIDFSDNEIR--------------KLDGFPLLRRLKT--------- 68

Query: 239 TDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDN 298
                                          +++++NR  R+       L  L  L L N
Sbjct: 69  -------------------------------LLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 299 NNLQ--GHIPSCLGNLTNLESLDLSNN 323
           N+L   G +   L +L +L  L +  N
Sbjct: 98  NSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 17/155 (10%)

Query: 20  LNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS 79
           + L+  L+  +      +        L L     +   I +    L+    +  S N + 
Sbjct: 2   VKLTAELIEQAAQYTNAVRD----RELDL-RGYKIP-VIENLGATLDQFDAIDFSDNEIR 55

Query: 80  GVLPQCLGNFSD--ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLV 136
                 L  F     L  L +  N               L  + L++N          L 
Sbjct: 56  -----KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 137 NCSKLEFLDLGNNQISDTF---PSWLGTIPNLNVL 168
           +   L +L +  N +++        +  +P + VL
Sbjct: 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 257 MM--TYNKIPDI--------LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306
           M+  T   I              + L   +    I    A L     ++  +N ++    
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350
                L  L++L ++NNR              L    +++N L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 5e-06
 Identities = 9/76 (11%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 267 LTGIILSSNRFDRVIPTSIAN---LKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLD 319
           L  + +       V+         L  L+ +++    L       +   +  + +L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 320 LSNNRFSGQIPQQLVE 335
           +  N  S ++ ++L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 7e-06
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGN---LTNLESLDLSNNRFSG----QIPQQLVEFTFL 339
               L+ L + +   Q  +         L  LE++D+S    +      +   + +   L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 340 EFFDVSDNYLTGA 352
           +F ++  NYL+  
Sbjct: 310 KFINMKYNYLSDE 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 56/340 (16%), Positives = 107/340 (31%), Gaps = 78/340 (22%)

Query: 22  LSHNLLTSS--NNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-----NLNTVKNLVLS 74
           +++ L      N ++    +P   T L L S N+L       +         +V +L LS
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDL-SLNNLYSISTVELIQAFANTPASVTSLNLS 59

Query: 75  HNNLS----GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
            N+L       L Q L      ++ L+L GN          +        +L   L    
Sbjct: 60  GNSLGFKNSDELVQILAAIPANVTSLNLSGNF---------LSYK--SSDELVKTL---- 104

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI-----PNLNVLILRSNKFY--------G 177
                     +  LDLG N  S    S           ++  L LR N            
Sbjct: 105 ----AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160

Query: 178 IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQV 237
           I+           ++ ++L  N    K  + + L    +  +  S +  L         +
Sbjct: 161 ILAAIPA-----NVNSLNLRGNNLASK--NCAELA-KFLASIPAS-VTSLD--------L 203

Query: 238 STDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD----RVIPTSIANLKGLQV 293
           S +L+    Y+ +      + +    P+ +  + L  N         +     +LK LQ 
Sbjct: 204 SANLLGLKSYAEL----AYIFSSI--PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 294 LNLDNNNLQG-------HIPSCLGNLTNLESLDLSNNRFS 326
           + LD + ++         + +   N+  +  +D +     
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           IP     + L S     +   +   L  L  LNLD N LQ        +LT L +L L+N
Sbjct: 33  IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 323 NRFS---GQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
           N+ +     +   L +   L    +  N L  ++P G
Sbjct: 93  NQLASLPLGVFDHLTQLDKL---YLGGNQLK-SLPSG 125

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           IP  +T + L  N+F  ++P  ++N K L +++L NN +         N+T L +L LS 
Sbjct: 29  IPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 323 NR 324
           NR
Sbjct: 88  NR 89

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           IP   T + L +N    +       L  L  L L  N LQ         LT+L  L+LS 
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 323 NRFSGQIPQ----QLVEFTFLEFFDVSDNYLTGAIPLG 356
           N+    +P     +L +   L    ++ N L  ++P G
Sbjct: 86  NQLQ-SLPNGVFDKLTQLKEL---ALNTNQLQ-SLPDG 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.98
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.98
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.6
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.12
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	90.3
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	90.05
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	80.59

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-48  Score=404.82  Aligned_cols=342  Identities=32%  Similarity=0.482  Sum_probs=234.8

Q ss_pred             CCcEEEccCCccccccchhhhc--CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           43 ETILYLVSNNSLTGEIPSWICN--LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +|+.|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+..++ +|++|++++|.+++..|..|..+++|++|
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence            4555555555554444444443  45566666666666556666666665 66666666666666666666666666666


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR  200 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~  200 (456)
                      ++++|++++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|++++..+..+  ..+++|++|++++|.
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNS  525 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCc
Confidence            666666666666666666666666666666666666666666666666666666666555444  566667777777776


Q ss_pred             CcCCCChhhhhCccccccccccCccccccccCCCCCccccc----cccccceeE--------------------------
Q 038396          201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL----ISTYDYSLI--------------------------  250 (456)
Q Consensus       201 l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------------------------  250 (456)
                      ++|.+|. .+..+++|+.+++++|.+.......+.......    .........                          
T Consensus       526 l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          526 FSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             CEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             ccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence            6666663 356666677777666655322211111000000    000000000                          


Q ss_pred             -------------eeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCe
Q 038396          251 -------------MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLES  317 (456)
Q Consensus       251 -------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  317 (456)
                                   ....+........++.|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|++
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence                         0000001111223567999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCccCC
Q 038396          318 LDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARA  389 (456)
Q Consensus       318 L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c~~~~~~~  389 (456)
                      |||++|++++.+|..+..+++|++||+++|+++|.+|...++.++...+|.|||++||.|+. .|....+..
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~  755 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADG  755 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999987 887655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.6e-42  Score=359.23  Aligned_cols=354  Identities=30%  Similarity=0.418  Sum_probs=214.6

Q ss_pred             cCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchh-hhcCCCCCeeecccCcC
Q 038396            3 GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSW-ICNLNTVKNLVLSHNNL   78 (456)
Q Consensus         3 g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l   78 (456)
                      |.+|+.+... +++|++|+|++|+++      +.+|..   +++|+.|++++|.+++.+|.. +..+++|++|++++|.+
T Consensus       283 ~~ip~~~~~~-~~~L~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          283 GEIPDFLSGA-CDTLTGLDLSGNHFY------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             ESCCCCSCTT-CTTCSEEECCSSEEE------ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CccCHHHHhh-cCcCCEEECcCCcCC------CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            4566655541 266666666666654      233322   566666666666666555543 66666666666666666


Q ss_pred             ccccChhhhhCCCCCcEEEccCCccceeCCccccC--CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC
Q 038396           79 SGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIK--ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP  156 (456)
Q Consensus        79 ~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  156 (456)
                      ++.+|..+..+..+|++|++++|.+++..|..+..  +++|++|++++|++++.+|..+..+++|++|++++|.+++..|
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            66666666555434566666665555555544444  4555555555555555555555555555555555555555555


Q ss_pred             ccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCC
Q 038396          157 SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ  236 (456)
Q Consensus       157 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~  236 (456)
                      ..++.+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++.+|. .+..+++|+.+++++|++.......+..
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            555555555555555555554444333  4445555555555555544442 2445555555555554432111111110


Q ss_pred             ccccccccccceeEeeccCc---ccccccccccccEEEccCCCCCccCch------------------------------
Q 038396          237 VSTDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPT------------------------------  283 (456)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~------------------------------  283 (456)
                      ..    ...  .+....+..   .......+++|++|++++|.+++.+|.                              
T Consensus       513 l~----~L~--~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          513 LE----NLA--ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             CT----TCC--EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             CC----CCC--EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            00    000  000000000   011111245566666666666554443                              


Q ss_pred             ----------------------------------------hhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCC
Q 038396          284 ----------------------------------------SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN  323 (456)
Q Consensus       284 ----------------------------------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  323 (456)
                                                              .+..+++|+.|||++|++++.+|..++.+++|+.|+|++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                    4445678999999999999999999999999999999999


Q ss_pred             cccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCC
Q 038396          324 RFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSG  372 (456)
Q Consensus       324 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~  372 (456)
                      ++++.+|..+..+++|+.|||++|+++|.+|.. ..++.++.+++.+|+.
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            999999999999999999999999999999975 5677888888998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=356.69  Aligned_cols=364  Identities=22%  Similarity=0.234  Sum_probs=239.6

Q ss_pred             ChhhhhhcCCCCCEEEccCCCCC------------------CCCcCccCCCC-----CCCCCcEEEccCCccccccc-hh
Q 038396            6 PKWLLDPSMQYLNALNLSHNLLT------------------SSNNLQGPLPV-----PPPETILYLVSNNSLTGEIP-SW   61 (456)
Q Consensus         6 p~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~l~~~~~~-----~~~~L~~L~ls~n~l~~~~~-~~   61 (456)
                      |..|.+  +++|++|+|++|.|+                  +.|.+.+.++.     .+++|++|++++|.+++..+ ..
T Consensus        66 ~~~f~~--L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  143 (844)
T 3j0a_A           66 KEAFRN--LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS  143 (844)
T ss_dssp             TTTTSS--CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred             HHHhcC--CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh
Confidence            445666  666666666666665                  22333333322     26677777777777765543 46


Q ss_pred             hhcCCCCCeeecccCcCccccChhhhhC--CCC------------------------------CcEEEccCCccceeCCc
Q 038396           62 ICNLNTVKNLVLSHNNLSGVLPQCLGNF--SDE------------------------------LSVLDLQGNNFFGTIPD  109 (456)
Q Consensus        62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~------------------------------L~~L~Ls~n~i~~~~~~  109 (456)
                      |.++++|++|++++|.+++..+..+..+  . +                              |++|++++|.+++..+.
T Consensus       144 ~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG  222 (844)
T ss_dssp             GGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred             HhhCCCCCEEECCCCcCCeeCHHHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence            7777777777777777765555554433  1 2                              44444444443322222


Q ss_pred             ccc------------------------------------C--CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcC
Q 038396          110 TFI------------------------------------K--ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI  151 (456)
Q Consensus       110 ~~~------------------------------------~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i  151 (456)
                      .+.                                    +  .++|++|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus       223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i  302 (844)
T 3j0a_A          223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI  302 (844)
T ss_dssp             GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred             HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC
Confidence            111                                    1  14677788888888777777888888888888888888


Q ss_pred             CcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccccc
Q 038396          152 SDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~  231 (456)
                      ++..|..|..+++|++|++++|++.+..+..+  ..+++|++|++++|.+. .++...|..+++|+.|++++|.+.....
T Consensus       303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             CEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred             CCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC
Confidence            87777788888888888888888877766555  67788888888888887 5665667778888888887766432110


Q ss_pred             -----------CCCCCcccccccc----------------------c-cceeEeeccCcc----cccccccccccEEEcc
Q 038396          232 -----------SPYGQVSTDLIST----------------------Y-DYSLIMNSKGRM----MTYNKIPDILTGIILS  273 (456)
Q Consensus       232 -----------~~~~~~~~~~~~~----------------------~-~~~~~~~~~~~~----~~~~~~~~~L~~L~Ls  273 (456)
                                 ..+..++......                      . ...+....+...    ......+++|+.|+++
T Consensus       380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls  459 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG  459 (844)
T ss_dssp             CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred             CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence                       0111111000000                      0 001111111110    1111224667777777


Q ss_pred             CCCCC-----ccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCc
Q 038396          274 SNRFD-----RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY  348 (456)
Q Consensus       274 ~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~  348 (456)
                      +|.++     +..+..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+.  ++|+.|++++|+
T Consensus       460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence            77776     33345677889999999999999988888889999999999999999876666554  789999999999


Q ss_pred             CcccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 038396          349 LTGAIPLGKQFATFDNTSFDGNSGLCGRPLS  379 (456)
Q Consensus       349 l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~  379 (456)
                      +++..|..  +..+..+++.+||+.|+|++.
T Consensus       538 l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          538 LLAPNPDV--FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred             CCCCChhH--hCCcCEEEecCCCcccccccH
Confidence            99888853  668888999999999988753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=327.31  Aligned_cols=328  Identities=18%  Similarity=0.160  Sum_probs=179.5

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      ++++|||++|+|+.   +.......+++|++|++++|.+++..|.+|.++++|++|+|++|.+++..+..|..++ +|++
T Consensus        33 ~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~  108 (477)
T 2id5_A           33 ETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTK  108 (477)
T ss_dssp             TCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCE
T ss_pred             CCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCE
Confidence            45555555555541   1111112245555555555555554455555555555555555555532223344444 5555


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      |++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            55555555555555555555555555555555554455555555555555555555544444455555555555555555


Q ss_pred             cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396          176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG  255 (456)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (456)
                      .+..+..+  ..+++|++|++++|...+.++...+.. .+|+.++++++.+...                          
T Consensus       189 ~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~--------------------------  239 (477)
T 2id5_A          189 NAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAV--------------------------  239 (477)
T ss_dssp             CEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSC--------------------------
T ss_pred             cEeChhhc--ccCcccceeeCCCCccccccCcccccC-ccccEEECcCCccccc--------------------------
Confidence            55443333  445555555555554444444332222 2444444444432100                          


Q ss_pred             cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhc
Q 038396          256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE  335 (456)
Q Consensus       256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~  335 (456)
                       .......+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..
T Consensus       240 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  318 (477)
T 2id5_A          240 -PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS  318 (477)
T ss_dssp             -CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred             -CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence             0001112456777777777777766666777777777777777777777777777777777777777777655556667


Q ss_pred             CCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          336 FTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       336 l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      +++|+.|++++|++.|.++..+.+.......+.++...|..|
T Consensus       319 l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          319 VGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             GGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            777777777777777766544444444444556666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.2e-39  Score=319.71  Aligned_cols=359  Identities=18%  Similarity=0.164  Sum_probs=219.2

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccccc-chhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEI-PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      ++|++|||++|.|+.   +.......+++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++. +|
T Consensus        30 ~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NL  105 (455)
T ss_dssp             TTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TC
T ss_pred             CccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc-cC
Confidence            456666666665541   11111112555666666666554322 44555566666666666666555555555555 56


Q ss_pred             cEEEccCCccceeCCcc--ccCCCCccEEeccCCcCcccCCcc-ccCCCCCcEEeCcCCcCCcCCCccccCC--CCCCEE
Q 038396           94 SVLDLQGNNFFGTIPDT--FIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGNNQISDTFPSWLGTI--PNLNVL  168 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L  168 (456)
                      ++|++++|.+++..+..  |..+++|++|++++|++++..|.. +..+++|++|++++|.+++..+..+..+  .+|+.|
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            66666666655433322  555566666666666665544443 5556666666666666655555555443  455666


Q ss_pred             EccCCcccccCCCCCC------ccCCCCccEEecccccCcCCCChhhhh--CccccccccccCccccccccC--CCCCcc
Q 038396          169 ILRSNKFYGIIKEPRT------DCRFSKLHIIDLSNNRFTGKLPSKSFL--CLDAMKIVNTSQLRYLQDVIS--PYGQVS  238 (456)
Q Consensus       169 ~L~~n~l~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~--~l~~l~~l~l~~~~~~~~~~~--~~~~~~  238 (456)
                      ++++|.+.+..+..+.      ...+++|++|++++|.+++..|.....  ...+++.++++.+........  .+....
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence            6666655554333221      123456777777777666444432211  124555555555433211100  000000


Q ss_pred             cccc-c---cccceeEeeccCc---ccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccC
Q 038396          239 TDLI-S---TYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN  311 (456)
Q Consensus       239 ~~~~-~---~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  311 (456)
                      .... .   .....+.......   .......+++|++|++++|.+++..+..+..+++|++|+|++|++++..|..|..
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence            0000 0   0011111111111   1122234678999999999999988999999999999999999999888999999


Q ss_pred             CCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCC
Q 038396          312 LTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       312 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      +++|++|+|++|++++..|..+..+++|++|++++|++++..+.. ..++.++.+++.+|++.|++|
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999888999999999999999999999765543 567889999999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=323.11  Aligned_cols=324  Identities=21%  Similarity=0.230  Sum_probs=285.3

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      -+.++.++++++       .+|.. .+.++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.+++ +|++
T Consensus        13 ~~~v~c~~~~l~-------~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~   84 (477)
T 2id5_A           13 DRAVLCHRKRFV-------AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRT   84 (477)
T ss_dssp             TTEEECCSCCCS-------SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCE
T ss_pred             CCEEEeCCCCcC-------cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCE
Confidence            468999999887       55554 57899999999999988889999999999999999999988899999998 8999


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      |++++|.++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus        85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A           85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            99999999977777899999999999999999988899999999999999999999988888999999999999999999


Q ss_pred             cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396          176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG  255 (456)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (456)
                      +++.+..+  ..+++|+.|++++|.+. .++...+..+++|+.++++++...........                    
T Consensus       165 ~~~~~~~l--~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------  221 (477)
T 2id5_A          165 TSIPTEAL--SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------------------  221 (477)
T ss_dssp             SSCCHHHH--TTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTT--------------------
T ss_pred             cccChhHh--cccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccc--------------------
Confidence            88755444  78899999999999998 56667788999999999998765433221111                    


Q ss_pred             cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhc
Q 038396          256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE  335 (456)
Q Consensus       256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~  335 (456)
                             ...+|++|++++|.+++..+..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..+..
T Consensus       222 -------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          222 -------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             -------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             -------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence                   0236999999999999877788999999999999999999888889999999999999999999988999999


Q ss_pred             CCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396          336 FTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       336 l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      +++|+.|++++|.+++..+.. ..++.++.+++.+|++.|+|+.
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            999999999999999765533 4567888999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.9e-39  Score=329.77  Aligned_cols=333  Identities=18%  Similarity=0.235  Sum_probs=284.4

Q ss_pred             CChhhh--hhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCc-ccc-ccchhhhcC------CCCCee
Q 038396            5 IPKWLL--DPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNS-LTG-EIPSWICNL------NTVKNL   71 (456)
Q Consensus         5 ip~~~~--~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~-l~~-~~~~~~~~l------~~L~~L   71 (456)
                      +|+.+.  +  +++|++|+|++|.+.      +.+|..   +++|++|++++|+ +++ .+|..+..+      ++|++|
T Consensus       239 ip~~l~~~~--l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          239 KTEDLKWDN--LKDLTDVEVYNCPNL------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TTSCCCGGG--CTTCCEEEEECCTTC------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             Cchhhhhcc--cCCCCEEEecCCcCC------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence            999988  9  999999999999875      456654   7899999999998 998 899988887      999999


Q ss_pred             ecccCcCccccCh--hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCC-CcEEeCcC
Q 038396           72 VLSHNNLSGVLPQ--CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEFLDLGN  148 (456)
Q Consensus        72 ~Ls~n~l~~~~~~--~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~Ls~  148 (456)
                      ++++|.++ .+|.  .+..++ +|++|++++|.+++.+| .|..+++|++|++++|+++ .+|..+..+++ |++|++++
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred             ECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence            99999999 8998  899998 89999999999998899 8999999999999999999 88888999999 99999999


Q ss_pred             CcCCcCCCccccCCC--CCCEEEccCCcccccCCCCCC-----ccCCCCccEEecccccCcCCCChhhhhCccccccccc
Q 038396          149 NQISDTFPSWLGTIP--NLNVLILRSNKFYGIIKEPRT-----DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT  221 (456)
Q Consensus       149 n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l  221 (456)
                      |.++ .+|..+..++  +|++|++++|.+.+..+..+.     ...+++|++|++++|.++ .+|...+..+++|+.+++
T Consensus       387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL  464 (636)
T ss_dssp             SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred             CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence            9999 7888887655  899999999999987766551     016779999999999999 899888889999999999


Q ss_pred             cCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhh--ccCCCCeEeCCCc
Q 038396          222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA--NLKGLQVLNLDNN  299 (456)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n  299 (456)
                      ++|.+.......+...                    ....+.+++|++|+|++|.++. +|..+.  .+++|+.|+|++|
T Consensus       465 s~N~l~~i~~~~~~~~--------------------~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N  523 (636)
T 4eco_A          465 MGNMLTEIPKNSLKDE--------------------NENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN  523 (636)
T ss_dssp             CSSCCSBCCSSSSEET--------------------TEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS
T ss_pred             CCCCCCCcCHHHhccc--------------------cccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC
Confidence            9987631111000000                    0000112379999999999996 666776  9999999999999


Q ss_pred             cccccCCccccCCCCCCeeeC------CCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCC
Q 038396          300 NLQGHIPSCLGNLTNLESLDL------SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGL  373 (456)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l  373 (456)
                      ++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|+.|++++|++ +.+|... .+.++.+++.+|+..
T Consensus       524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNI  600 (636)
T ss_dssp             CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTC
T ss_pred             CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCc
Confidence            9996 8999999999999999      56788889999999999999999999999 6778653 378999999999987


Q ss_pred             CC
Q 038396          374 CG  375 (456)
Q Consensus       374 c~  375 (456)
                      |-
T Consensus       601 ~~  602 (636)
T 4eco_A          601 SI  602 (636)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.4e-39  Score=328.34  Aligned_cols=212  Identities=17%  Similarity=0.141  Sum_probs=151.6

Q ss_pred             cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccccc-CCCCCcc
Q 038396          160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI-SPYGQVS  238 (456)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~  238 (456)
                      ..+++|++|++++|++++....+..+..+++|++|++++|.++ .+| ..+..+++|+.++++++.+..... ..+... 
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-  423 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-  423 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhcc-
Confidence            3456777778888877765322222366777888888888776 455 446777777777777776533321 111110 


Q ss_pred             ccccccccceeEeeccCc---ccccccccccccEEEccCCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396          239 TDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN  314 (456)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  314 (456)
                         ....  .+.......   .......+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++
T Consensus       424 ---~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          424 ---EKLL--YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             ---TTCC--EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ---ccCC--EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence               0000  011111111   11122336789999999999987 47888999999999999999999999999999999


Q ss_pred             CCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCC-CCCCcccCCCCCCCCCCCC
Q 038396          315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFA-TFDNTSFDGNSGLCGRPLS  379 (456)
Q Consensus       315 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~~~~~~n~~lc~~~~~  379 (456)
                      |++|++++|++++..|..+..+++|+.|++++|+++...+....++ .++.+++.+||+.|+|+..
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999999999998889999999999999999999994433334454 4888999999999998853

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1e-38  Score=326.27  Aligned_cols=302  Identities=18%  Similarity=0.187  Sum_probs=204.2

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      +|++|++++|.+++..+..+..++ +|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            455666666666655555566665 6777777777766 55666666777777777777776666666667777777777


Q ss_pred             cCCcCCcCCCc-cccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcc
Q 038396          147 GNNQISDTFPS-WLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR  225 (456)
Q Consensus       147 s~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~  225 (456)
                      ++|.+.+.++. .+..+++|++|++++|.+.+....+..+..+++|++|++++|.+. .++...+..+++|+.++++++.
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCc
Confidence            77766644433 366667777777777766655411222256666777777777666 3333446666666666666665


Q ss_pred             ccccccCC-CCCccccccccccceeEeeccC---cccccccccccccEEEccCCCCCcc---CchhhhccCCCCeEeCCC
Q 038396          226 YLQDVISP-YGQVSTDLISTYDYSLIMNSKG---RMMTYNKIPDILTGIILSSNRFDRV---IPTSIANLKGLQVLNLDN  298 (456)
Q Consensus       226 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~L~~  298 (456)
                      +....... +...    ....  .+......   ........+++|++|++++|.+++.   .+..+..+++|+.|++++
T Consensus       412 l~~~~~~~~~~~l----~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~  485 (606)
T 3t6q_A          412 LKVKDAQSPFQNL----HLLK--VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF  485 (606)
T ss_dssp             EECCTTCCTTTTC----TTCC--EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred             CCCcccchhhhCc----ccCC--EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence            43221111 1110    0000  01111110   1111223367899999999999873   235788999999999999


Q ss_pred             ccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCC
Q 038396          299 NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       299 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      |++++..|..|..+++|++|+|++|++++..|..+..++.| +|++++|++++..|.. ..++.++.+++.+||+.|+|+
T Consensus       486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99998889999999999999999999999999999999999 9999999999877753 456778889999999999876


Q ss_pred             C
Q 038396          378 L  378 (456)
Q Consensus       378 ~  378 (456)
                      .
T Consensus       565 ~  565 (606)
T 3t6q_A          565 N  565 (606)
T ss_dssp             G
T ss_pred             c
Confidence            3

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-38  Score=326.40  Aligned_cols=333  Identities=20%  Similarity=0.217  Sum_probs=278.3

Q ss_pred             ccCCChhhhhhcCCCCCEEEccCCCCCCCC-----------cCccCCCC-----CCCCCcEEEccCCccccccchhhhcC
Q 038396            2 HGKIPKWLLDPSMQYLNALNLSHNLLTSSN-----------NLQGPLPV-----PPPETILYLVSNNSLTGEIPSWICNL   65 (456)
Q Consensus         2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~l~~~~~~-----~~~~L~~L~ls~n~l~~~~~~~~~~l   65 (456)
                      +| ||+.|.+  +++|++|+|++|.++...           ...+.+|.     .+++|++|++++|.+.+.+|..|.++
T Consensus       196 ~~-ip~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          196 TF-VSKAVMR--LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EE-ECGGGGG--CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             cc-CCHHHhc--ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            46 9999999  999999999999987310           00001443     36799999999999999999999999


Q ss_pred             CCCCeeecccCc-Ccc-ccChhhhhC------CCCCcEEEccCCccceeCCc--cccCCCCccEEeccCCcCcccCCccc
Q 038396           66 NTVKNLVLSHNN-LSG-VLPQCLGNF------SDELSVLDLQGNNFFGTIPD--TFIKESRLGVIDLSHNLFQGRIPRSL  135 (456)
Q Consensus        66 ~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l  135 (456)
                      ++|++|++++|+ +++ .+|..++.+      + +|++|++++|.++ .+|.  .|..+++|++|++++|++++.+| .+
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence            999999999998 998 899999886      6 8999999999999 7888  89999999999999999998888 89


Q ss_pred             cCCCCCcEEeCcCCcCCcCCCccccCCCC-CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhh---
Q 038396          136 VNCSKLEFLDLGNNQISDTFPSWLGTIPN-LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL---  211 (456)
Q Consensus       136 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---  211 (456)
                      ..+++|++|++++|.++ .+|..+..+++ |++|++++|+++.+ +..+....+++|++|++++|.+++.+|.. +.   
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~  426 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLD  426 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTC
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhh-hcccc
Confidence            99999999999999998 78888999999 99999999999954 44443334558999999999999776643 44   


Q ss_pred             ----CccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhc
Q 038396          212 ----CLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN  287 (456)
Q Consensus       212 ----~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~  287 (456)
                          .+.+|+.+++++|.+...                           .......++.|++|+|++|.++.+++..+..
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~l---------------------------p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  479 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKF---------------------------PKELFSTGSPLSSINLMGNMLTEIPKNSLKD  479 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSC---------------------------CTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred             cccccCCCCCEEECcCCccCcC---------------------------CHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence                667899999988776210                           0011112567999999999999755555444


Q ss_pred             cC-------CCCeEeCCCccccccCCcccc--CCCCCCeeeCCCCcccccCchhhhcCCCCCEEec------cCCcCccc
Q 038396          288 LK-------GLQVLNLDNNNLQGHIPSCLG--NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDV------SDNYLTGA  352 (456)
Q Consensus       288 l~-------~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l------s~N~l~~~  352 (456)
                      ..       +|+.|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|+.|++      ++|++.+.
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred             ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence            33       9999999999999 7888887  99999999999999996 8999999999999999      56788888


Q ss_pred             CCCC-CCCCCCCCcccCCCCC
Q 038396          353 IPLG-KQFATFDNTSFDGNSG  372 (456)
Q Consensus       353 ~p~~-~~~~~l~~~~~~~n~~  372 (456)
                      +|.. ..++.++.+++.+|..
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC
T ss_pred             ChHHHhcCCCCCEEECCCCcC
Confidence            8865 5678888999999976

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.5e-38  Score=311.09  Aligned_cols=322  Identities=19%  Similarity=0.180  Sum_probs=255.3

Q ss_pred             ccCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccc
Q 038396            2 HGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV   81 (456)
Q Consensus         2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~   81 (456)
                      ++..|..|.+  +++|++|+|++|.+..  .+.......+++|++|++++|.+++..|..|.++++|++|++++|.+++.
T Consensus        43 ~~~~~~~~~~--l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  118 (455)
T 3v47_A           43 AELNETSFSR--LQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA  118 (455)
T ss_dssp             CEECTTTTSS--CTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred             CcCChhHhcc--CccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence            4556788999  9999999999998751  11112223388999999999999988899999999999999999999875


Q ss_pred             cChh--hhhCCCCCcEEEccCCccceeCCcc-ccCCCCccEEeccCCcCcccCCccccCC--CCCcEEeCcCCcCCcCCC
Q 038396           82 LPQC--LGNFSDELSVLDLQGNNFFGTIPDT-FIKESRLGVIDLSHNLFQGRIPRSLVNC--SKLEFLDLGNNQISDTFP  156 (456)
Q Consensus        82 ~~~~--~~~l~~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--~~L~~L~Ls~n~i~~~~~  156 (456)
                      .+..  +..++ +|++|++++|.+++..|.. |..+++|++|++++|++++..+..+..+  .+|+.|++++|.+.+..+
T Consensus       119 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~  197 (455)
T 3v47_A          119 VLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE  197 (455)
T ss_dssp             HHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred             ccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccch
Confidence            5554  88888 8999999999999887776 8899999999999999998888877765  566777777777665433


Q ss_pred             ccc--------cCCCCCCEEEccCCcccccCCC-------------------------------------CCCccCCCCc
Q 038396          157 SWL--------GTIPNLNVLILRSNKFYGIIKE-------------------------------------PRTDCRFSKL  191 (456)
Q Consensus       157 ~~~--------~~l~~L~~L~L~~n~l~~~~~~-------------------------------------~~~~~~l~~L  191 (456)
                      ..+        ..+++|++|++++|++.+..+.                                     .+.....++|
T Consensus       198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  277 (455)
T 3v47_A          198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV  277 (455)
T ss_dssp             TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred             hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence            322        2445667777776665432111                                     1111123688


Q ss_pred             cEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEE
Q 038396          192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII  271 (456)
Q Consensus       192 ~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  271 (456)
                      ++|++++|.+++. +...+..+++|+.++++++.+.......+.                           .+++|++|+
T Consensus       278 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------------------------~l~~L~~L~  329 (455)
T 3v47_A          278 KTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFW---------------------------GLTHLLKLN  329 (455)
T ss_dssp             CEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTT---------------------------TCTTCCEEE
T ss_pred             eEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhc---------------------------CcccCCEEE
Confidence            9999999998844 445688888999999988776332221111                           256799999


Q ss_pred             ccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396          272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       272 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                      +++|.+++..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|+++|
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            99999999889999999999999999999998889999999999999999999997777778999999999999999999


Q ss_pred             cCCCC
Q 038396          352 AIPLG  356 (456)
Q Consensus       352 ~~p~~  356 (456)
                      .+|..
T Consensus       410 ~~~~~  414 (455)
T 3v47_A          410 SCPRI  414 (455)
T ss_dssp             CTTTT
T ss_pred             CCCcc
Confidence            99954

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-37  Score=323.27  Aligned_cols=355  Identities=17%  Similarity=0.144  Sum_probs=265.7

Q ss_pred             CChhhhhhcCCCCCEEEccCCCCCCC-----------CcCccCCCC-----CCCCCcEEEccCCccccccchhhhcCCCC
Q 038396            5 IPKWLLDPSMQYLNALNLSHNLLTSS-----------NNLQGPLPV-----PPPETILYLVSNNSLTGEIPSWICNLNTV   68 (456)
Q Consensus         5 ip~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~l~~~~~~-----~~~~L~~L~ls~n~l~~~~~~~~~~l~~L   68 (456)
                      ||+.|.+  +++|++|+|++|+|+..           +.+.|.+|.     .+++|+.|++++|.+.+.+|..|.++++|
T Consensus       440 IP~~l~~--L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQR--LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGGG--CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred             hhHHHhc--CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence            8999999  99999999999998730           001112554     36789999999999999999999999999


Q ss_pred             CeeecccCc-Ccc-ccChhhhhCC------CCCcEEEccCCccceeCCc--cccCCCCccEEeccCCcCcccCCccccCC
Q 038396           69 KNLVLSHNN-LSG-VLPQCLGNFS------DELSVLDLQGNNFFGTIPD--TFIKESRLGVIDLSHNLFQGRIPRSLVNC  138 (456)
Q Consensus        69 ~~L~Ls~n~-l~~-~~~~~~~~l~------~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  138 (456)
                      ++|++++|+ +++ .+|..++.+.      ++|++|++++|.++ .+|.  .|..+++|++|++++|+++ .+| .|..+
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L  594 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN  594 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence            999999998 887 7888777653      37999999999999 7787  8999999999999999999 777 89999


Q ss_pred             CCCcEEeCcCCcCCcCCCccccCCCC-CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhh--hh--Cc
Q 038396          139 SKLEFLDLGNNQISDTFPSWLGTIPN-LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKS--FL--CL  213 (456)
Q Consensus       139 ~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~--~~--~l  213 (456)
                      ++|+.|++++|.++ .+|..+..+++ |++|++++|+++.+ +..+.....++|+.|++++|.+.+.+|.-.  +.  .+
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~  672 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG  672 (876)
T ss_dssp             SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred             CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence            99999999999998 78888899998 99999999998854 344422233448888888888876554211  11  23


Q ss_pred             cccccccccCccccccccCCCCCccccccccccceeEeeccC-ccccccc-------ccccccEEEccCCCCCccCchhh
Q 038396          214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG-RMMTYNK-------IPDILTGIILSSNRFDRVIPTSI  285 (456)
Q Consensus       214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~L~~L~Ls~n~l~~~~~~~l  285 (456)
                      .+|+.|++++|.+.......+.    .........+...... .......       .+++|+.|+|++|+++. +|..+
T Consensus       673 ~~L~~L~Ls~N~L~~lp~~~~~----~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l  747 (876)
T 4ecn_A          673 INASTVTLSYNEIQKFPTELFA----TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF  747 (876)
T ss_dssp             CCEEEEECCSSCCCSCCHHHHH----TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGG
T ss_pred             CCcCEEEccCCcCCccCHHHHc----cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHh
Confidence            4677777777665311000000    0000000111000000 0000111       12379999999999995 66677


Q ss_pred             h--ccCCCCeEeCCCccccccCCccccCCCCCCeeeCCC------CcccccCchhhhcCCCCCEEeccCCcCcccCCCCC
Q 038396          286 A--NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN------NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK  357 (456)
Q Consensus       286 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~  357 (456)
                      .  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|.. 
T Consensus       748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-  824 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-  824 (876)
T ss_dssp             STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-
T ss_pred             hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-
Confidence            6  89999999999999996 788899999999999976      788889999999999999999999999 678875 


Q ss_pred             CCCCCCCcccCCCCCCC
Q 038396          358 QFATFDNTSFDGNSGLC  374 (456)
Q Consensus       358 ~~~~l~~~~~~~n~~lc  374 (456)
                      ..+.++.+++.+|+...
T Consensus       825 l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          825 LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             CCSSSCEEECCSCTTCE
T ss_pred             hcCCCCEEECCCCCCCc
Confidence            33688888899998643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.7e-37  Score=315.68  Aligned_cols=361  Identities=20%  Similarity=0.218  Sum_probs=242.2

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP   83 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   83 (456)
                      .||+.+.    +++++|||++|+|+   .+.......+++|++|+|++|+|+++.+++|.++++|++|+|++|++++..+
T Consensus        45 ~vP~~lp----~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           45 KIPDNLP----FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             SCCSSSC----TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             ccCCCCC----cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            4665552    37899999999887   2222222337889999999999987778889999999999999999985555


Q ss_pred             hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396           84 QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI  162 (456)
Q Consensus        84 ~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  162 (456)
                      ..|.++. +|++|++++|++++..+..|+++++|++|++++|++++. .|..+..+++|++|++++|++++..+..+..+
T Consensus       118 ~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          118 GAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             GGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             HHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence            6778887 899999999999877777888999999999999988753 56778888999999999988876555444322


Q ss_pred             CCC----CEEEccCCcccccCCCC--------------------------------------------------------
Q 038396          163 PNL----NVLILRSNKFYGIIKEP--------------------------------------------------------  182 (456)
Q Consensus       163 ~~L----~~L~L~~n~l~~~~~~~--------------------------------------------------------  182 (456)
                      .++    ..++++.|.+..+.+..                                                        
T Consensus       197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  276 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  276 (635)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred             hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence            111    12223222221111000                                                        


Q ss_pred             --------------------------------------------------------------------------------
Q 038396          183 --------------------------------------------------------------------------------  182 (456)
Q Consensus       183 --------------------------------------------------------------------------------  182 (456)
                                                                                                      
T Consensus       277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l  356 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF  356 (635)
T ss_dssp             GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred             cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence                                                                                            


Q ss_pred             --------CCccCCCCccEEecccccCcC--CCChh----------------------hhhCccccccccccCccccccc
Q 038396          183 --------RTDCRFSKLHIIDLSNNRFTG--KLPSK----------------------SFLCLDAMKIVNTSQLRYLQDV  230 (456)
Q Consensus       183 --------~~~~~l~~L~~L~ls~n~l~~--~~~~~----------------------~~~~l~~l~~l~l~~~~~~~~~  230 (456)
                              .....+++|+.+++++|.+..  ..+..                      .+..++.++.+++..+......
T Consensus       357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  436 (635)
T 4g8a_A          357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS  436 (635)
T ss_dssp             ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred             ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence                    000123444445555444421  01110                      0112223333333332221111


Q ss_pred             cCCCCCccccccccccc-eeEeeccC---cccccccccccccEEEccCCCC-CccCchhhhccCCCCeEeCCCccccccC
Q 038396          231 ISPYGQVSTDLISTYDY-SLIMNSKG---RMMTYNKIPDILTGIILSSNRF-DRVIPTSIANLKGLQVLNLDNNNLQGHI  305 (456)
Q Consensus       231 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~  305 (456)
                      ...      ........ ........   ........++.++.|++++|.+ ....|..+..+++|++|+|++|++++..
T Consensus       437 ~~~------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~  510 (635)
T 4g8a_A          437 EFS------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  510 (635)
T ss_dssp             SSC------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             ccc------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence            100      00000000 11111111   1122233467899999999975 4557788999999999999999999999


Q ss_pred             CccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC-CC-CCCCCcccCCCCCCCCCCC
Q 038396          306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK-QF-ATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       306 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~~n~~lc~~~~  378 (456)
                      |..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..|... .+ ..++.+++.+||+.|+|.+
T Consensus       511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999999999999999999998888899999999999999999999888652 33 5788899999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-37  Score=291.70  Aligned_cols=259  Identities=30%  Similarity=0.455  Sum_probs=185.6

Q ss_pred             CCCcEEEccCCcccc--ccchhhhcCCCCCeeeccc-CcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCcc
Q 038396           42 PETILYLVSNNSLTG--EIPSWICNLNTVKNLVLSH-NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG  118 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  118 (456)
                      .+++.|++++|.+++  .+|..|.++++|++|++++ |.+.+.+|..+..++ +|++|++++|.+++..|..|..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            456666666666665  5666666666666666663 666656666666665 566666666666656666666666666


Q ss_pred             EEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCC-CCCEEEccCCcccccCCCCCCccCCCCccEEecc
Q 038396          119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP-NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLS  197 (456)
Q Consensus       119 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls  197 (456)
                      +|++++|++++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++..+..+  ..++        
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~--------  198 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN--------  198 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC--------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc--------
Confidence            666666666655666666666666666666666555555555554 55555555555543332222  1111        


Q ss_pred             cccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCC
Q 038396          198 NNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRF  277 (456)
Q Consensus       198 ~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  277 (456)
                                                                                           |++|++++|.+
T Consensus       199 ---------------------------------------------------------------------L~~L~Ls~N~l  209 (313)
T 1ogq_A          199 ---------------------------------------------------------------------LAFVDLSRNML  209 (313)
T ss_dssp             ---------------------------------------------------------------------CSEEECCSSEE
T ss_pred             ---------------------------------------------------------------------ccEEECcCCcc
Confidence                                                                                 56666666666


Q ss_pred             CccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC
Q 038396          278 DRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK  357 (456)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~  357 (456)
                      ++..|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|...
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            666777888899999999999999966665 8889999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCCC
Q 038396          358 QFATFDNTSFDGNSGLCGRPLSKGC  382 (456)
Q Consensus       358 ~~~~l~~~~~~~n~~lc~~~~~~~c  382 (456)
                      .++.++.+++.+|+++||.|+. .|
T Consensus       289 ~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccChHHhcCCCCccCCCCC-CC
Confidence            8999999999999999998876 36

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=315.36  Aligned_cols=188  Identities=18%  Similarity=0.177  Sum_probs=143.1

Q ss_pred             cCCCCccEEecccccCcCCCC-hhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec--cCccccccc
Q 038396          186 CRFSKLHIIDLSNNRFTGKLP-SKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS--KGRMMTYNK  262 (456)
Q Consensus       186 ~~l~~L~~L~ls~n~l~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  262 (456)
                      ..+++|++|++++|.+++... ...+..+++|+.++++++.+...... +...    .......+....  .........
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l----~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL----EQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC----TTCCEEECTTSEEESCTTSCTTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cccc----CCCCEEEccCCccccccchhhhh
Confidence            457889999999999874321 34578899999999998876332211 1110    011111110000  000111223


Q ss_pred             ccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccc-ccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCE
Q 038396          263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF  341 (456)
Q Consensus       263 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  341 (456)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            4678999999999999989999999999999999999998 578999999999999999999999888999999999999


Q ss_pred             EeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396          342 FDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       342 L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      |++++|++++..|.. ..++.++.+++.+|++.|+|+.
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999877754 5678889999999999998774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-36  Score=310.35  Aligned_cols=359  Identities=16%  Similarity=0.105  Sum_probs=179.2

Q ss_pred             cCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            3 GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         3 g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      +..|..|.+  +++|++|+|++|+++.   +.......+++|++|++++|.+++..|..|.++++|++|++++|.+++..
T Consensus        47 ~~~~~~~~~--l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~  121 (606)
T 3t6q_A           47 TIQNTTFSR--LINLTFLDLTRCQIYW---IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID  121 (606)
T ss_dssp             EECTTTSTT--CTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred             cCChhHhcc--CccceEEECCCCccce---eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence            334556777  7777777777777651   11111122566666666666666555666666666666666666666444


Q ss_pred             ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc--EEeCcCCc----------
Q 038396           83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE--FLDLGNNQ----------  150 (456)
Q Consensus        83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~--~L~Ls~n~----------  150 (456)
                      +..+..+. +|++|++++|.+++.....+..+++|++|++++|++++..+..+..+++|+  .|++++|.          
T Consensus       122 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~  200 (606)
T 3t6q_A          122 FIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD  200 (606)
T ss_dssp             GSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred             cchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence            44555555 566666666665543323333355555555555555544444444444443  33333333          


Q ss_pred             -----------------------------------------------------------------CCcCCCccccCCCCC
Q 038396          151 -----------------------------------------------------------------ISDTFPSWLGTIPNL  165 (456)
Q Consensus       151 -----------------------------------------------------------------i~~~~~~~~~~l~~L  165 (456)
                                                                                       +++..+..|+.+++|
T Consensus       201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  280 (606)
T 3t6q_A          201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL  280 (606)
T ss_dssp             TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred             hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence                                                                             333333335556666


Q ss_pred             CEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCC-CCCccc-----
Q 038396          166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP-YGQVST-----  239 (456)
Q Consensus       166 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~-----  239 (456)
                      ++|++++|+++.++ ..+  ..+++|++|++++|.++ .++...+..+++|+.++++++......... +.....     
T Consensus       281 ~~L~l~~n~l~~lp-~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          281 QELDLTATHLSELP-SGL--VGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             SEEECTTSCCSCCC-SSC--CSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             CEEeccCCccCCCC-hhh--cccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            77777776666442 222  55666666666666665 333344556666666666655432111110 100000     


Q ss_pred             --------------cccccc-cceeEeeccCc---ccccccccccccEEEccCCCCCccCch-hhhccCCCCeEeCCCcc
Q 038396          240 --------------DLISTY-DYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPT-SIANLKGLQVLNLDNNN  300 (456)
Q Consensus       240 --------------~~~~~~-~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~  300 (456)
                                    .+.... ...+.......   .......+++|++|++++|.+.+..+. .+..+++|++|++++|.
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence                          000000 00000000000   011111234455555555555544332 25555556666666665


Q ss_pred             ccccCCccccCCCCCCeeeCCCCccccc---CchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCC
Q 038396          301 LQGHIPSCLGNLTNLESLDLSNNRFSGQ---IPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNS  371 (456)
Q Consensus       301 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~  371 (456)
                      +++..|..+..+++|++|++++|++++.   .+..+..+++|+.|++++|.+++..|.. ..++.++.+++.+|.
T Consensus       437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            5555555555556666666666655541   1234555566666666666665554432 344555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-37  Score=324.40  Aligned_cols=357  Identities=20%  Similarity=0.254  Sum_probs=245.5

Q ss_pred             CccCCChhhhhhcCCCCCEEEc-cCCCCCCC-------------------------------------------------
Q 038396            1 IHGKIPKWLLDPSMQYLNALNL-SHNLLTSS-------------------------------------------------   30 (456)
Q Consensus         1 l~g~ip~~~~~~~l~~L~~L~L-s~N~l~~~-------------------------------------------------   30 (456)
                      |+|.+|+.|.+  +++|++||| ++|.++..                                                 
T Consensus       335 L~G~ip~~l~~--L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~  412 (876)
T 4ecn_A          335 AKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP  412 (876)
T ss_dssp             CEEEECGGGGG--CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred             CCCcCchHHhc--cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence            57899999999  999999999 88864311                                                 


Q ss_pred             ----------------------CcCccCCCCC---CCCCcEEEccCCcccc-----------------ccchhhh--cCC
Q 038396           31 ----------------------NNLQGPLPVP---PPETILYLVSNNSLTG-----------------EIPSWIC--NLN   66 (456)
Q Consensus        31 ----------------------~~l~~~~~~~---~~~L~~L~ls~n~l~~-----------------~~~~~~~--~l~   66 (456)
                                            |.+.+ +|..   +++|+.|++++|.+++                 .+|..+.  +++
T Consensus       413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence                                  23333 5543   6788888888888887                 2777766  888


Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCc-cce-eCCccccCC-------CCccEEeccCCcCcccCCc--cc
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN-FFG-TIPDTFIKE-------SRLGVIDLSHNLFQGRIPR--SL  135 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~-i~~-~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~--~l  135 (456)
                      +|++|+|++|.+.+.+|..+.+++ +|++|++++|+ +++ .+|..+..+       ++|++|++++|+++ .+|.  .+
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l  569 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL  569 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred             CCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence            888888888888888888888887 78888888887 776 666655544       48888888888888 6777  78


Q ss_pred             cCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCC-ccEEecccccCcCCCChhhhhCcc
Q 038396          136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK-LHIIDLSNNRFTGKLPSKSFLCLD  214 (456)
Q Consensus       136 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~l~  214 (456)
                      ..+++|++|++++|.++ .+| .++.+++|+.|++++|++..+ +..+  ..+++ |+.|++++|.++ .+|. .+..+.
T Consensus       570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l--~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~  642 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEI-PEDF--CAFTDQVEGLGFSHNKLK-YIPN-IFNAKS  642 (876)
T ss_dssp             TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCC-CTTS--CEECTTCCEEECCSSCCC-SCCS-CCCTTC
T ss_pred             hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccc-hHHH--hhccccCCEEECcCCCCC-cCch-hhhccc
Confidence            88888888888888887 667 788888888888888888733 3334  66777 888888888887 7773 344443


Q ss_pred             --ccccccccCccccccccCCCCCccccccccccceeEeeccCc---ccccccccccccEEEccCCCCCccCchhhhc--
Q 038396          215 --AMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPTSIAN--  287 (456)
Q Consensus       215 --~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~--  287 (456)
                        +|+.+++++|.+...... +..............+....+..   .......++.|+.|+|++|.++.+++..+..  
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~-l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~  721 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRN-ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD  721 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSS-CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred             cCCCCEEECcCCcCCCcccc-chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence              388888888766322110 00000000000001111111111   1111123466888888888887543333332  


Q ss_pred             -----cCCCCeEeCCCccccccCCcccc--CCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC------CcCcccCC
Q 038396          288 -----LKGLQVLNLDNNNLQGHIPSCLG--NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD------NYLTGAIP  354 (456)
Q Consensus       288 -----l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~------N~l~~~~p  354 (456)
                           +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |.+.+.+|
T Consensus       722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip  799 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP  799 (876)
T ss_dssp             SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred             ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence                 237888888888887 6677776  78888888888888875 677777888888888865      66777777


Q ss_pred             CC-CCCCCCCCcccCCCCC
Q 038396          355 LG-KQFATFDNTSFDGNSG  372 (456)
Q Consensus       355 ~~-~~~~~l~~~~~~~n~~  372 (456)
                      .. ..++.++.+++.+|..
T Consensus       800 ~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             TTGGGCSSCCEEECCSSCC
T ss_pred             HHHhcCCCCCEEECCCCCC
Confidence            54 4566777777777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-36  Score=315.05  Aligned_cols=363  Identities=19%  Similarity=0.181  Sum_probs=233.9

Q ss_pred             cCCChhhhhhcCC--CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcc
Q 038396            3 GKIPKWLLDPSMQ--YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG   80 (456)
Q Consensus         3 g~ip~~~~~~~l~--~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   80 (456)
                      +..|..|..  ++  +|++|++++|+++.   +.......+++|+.|++++|.+++..|..|.++++|++|++++|...+
T Consensus       236 ~~~~~~~~~--l~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          236 TTSNTTFLG--LKWTNLTMLDLSYNNLNV---VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             EECTTTTGG--GGGSCCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             ccChhHhhc--cCcCCCCEEECCCCCcCc---cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            344555655  43  37777777777651   111111235677777777777776666677777777777776654332


Q ss_pred             -----ccCh----hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcc--cCCccccCC--CCCcEEeCc
Q 038396           81 -----VLPQ----CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG--RIPRSLVNC--SKLEFLDLG  147 (456)
Q Consensus        81 -----~~~~----~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l--~~L~~L~Ls  147 (456)
                           .+|.    .+..++ +|++|++++|.+++..+..|.++++|++|++++|.+..  ..+..|..+  ++|+.|+++
T Consensus       311 ~~~~~~lp~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~  389 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT  389 (680)
T ss_dssp             ------CCEECTTTTTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred             ccccccccccChhhcccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence                 1221    455565 67777777777777666777777777777777765431  122223222  466667777


Q ss_pred             CCcCCcCCCccccCCCCCCEEEccCCcccccCC-CCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK-EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      +|.+++..|.++..+++|++|++++|.+.+..+ ..+  ..+++|++|++++|.+. .++...|..++.|+.++++++..
T Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc--cCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccc
Confidence            777776667777777777777777777765433 233  56777777777777776 44555566777777777766554


Q ss_pred             ccc--ccCCCCCccccccccccceeEeecc-CcccccccccccccEEEccCCCCCccCc--------hhhhccCCCCeEe
Q 038396          227 LQD--VISPYGQVSTDLISTYDYSLIMNSK-GRMMTYNKIPDILTGIILSSNRFDRVIP--------TSIANLKGLQVLN  295 (456)
Q Consensus       227 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~  295 (456)
                      ...  ....+..    ........+..... .........+++|++|++++|.+++..+        ..+..+++|+.|+
T Consensus       467 ~~~~~~p~~~~~----l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          467 KNVDSSPSPFQP----LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             BCTTCSSCTTTT----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccCCccccc----CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            211  0000100    00000011100000 1111112335779999999999887522        2378889999999


Q ss_pred             CCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC--CCCCCCCcccCCCCCC
Q 038396          296 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK--QFATFDNTSFDGNSGL  373 (456)
Q Consensus       296 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~~n~~l  373 (456)
                      |++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|...  .++.++.+++.+||+.
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            99999995555678999999999999999997666778899999999999999997666432  4678888999999999


Q ss_pred             CCCCC
Q 038396          374 CGRPL  378 (456)
Q Consensus       374 c~~~~  378 (456)
                      |+|+.
T Consensus       623 c~c~~  627 (680)
T 1ziw_A          623 CTCES  627 (680)
T ss_dssp             BCCCC
T ss_pred             cCCcc
Confidence            99874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=321.14  Aligned_cols=360  Identities=20%  Similarity=0.154  Sum_probs=218.3

Q ss_pred             cCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            3 GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         3 g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      +..|..|.+  +++|++|||++|.+..  .+.......+++|++|++++|.+++..|++|.++++|++|+|++|.+++.+
T Consensus        38 ~i~~~~~~~--l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  113 (844)
T 3j0a_A           38 TVTASSFPF--LEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV  113 (844)
T ss_dssp             EECSSSCSS--CCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred             ccChhHCcc--cccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence            344556666  6777777777764320  111111223778888888888888777888888888888888888887655


Q ss_pred             Chh--hhhCCCCCcEEEccCCccceeCC-ccccCCCCccEEeccCCcCcccCCccccCC---------------------
Q 038396           83 PQC--LGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNC---------------------  138 (456)
Q Consensus        83 ~~~--~~~l~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---------------------  138 (456)
                      |..  +..++ +|++|++++|.+++..+ ..|.++++|++|++++|.+++..+..+..+                     
T Consensus       114 ~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~  192 (844)
T 3j0a_A          114 LKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV  192 (844)
T ss_dssp             STTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred             ccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence            554  66776 78888888888876544 467778888888888877765433322211                     


Q ss_pred             -------------------------------------------------------------------------CCCcEEe
Q 038396          139 -------------------------------------------------------------------------SKLEFLD  145 (456)
Q Consensus       139 -------------------------------------------------------------------------~~L~~L~  145 (456)
                                                                                               ++|+.|+
T Consensus       193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~  272 (844)
T 3j0a_A          193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD  272 (844)
T ss_dssp             CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred             chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence                                                                                     2344444


Q ss_pred             CcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcc
Q 038396          146 LGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR  225 (456)
Q Consensus       146 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~  225 (456)
                      +++|.+++..+..+..+++|+.|++++|++.+..+..+  ..+++|++|++++|.++ .++...+..+++|+.+++++|.
T Consensus       273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNH  349 (844)
T ss_dssp             CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCC
T ss_pred             CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCC
Confidence            44444444444455556666666666666665555444  55666666666666665 3433446666666666666655


Q ss_pred             ccccccCCCCCccc------------cccccc-cceeEeeccCcccccc-------------------------cccccc
Q 038396          226 YLQDVISPYGQVST------------DLISTY-DYSLIMNSKGRMMTYN-------------------------KIPDIL  267 (456)
Q Consensus       226 ~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~L  267 (456)
                      +.......+.....            .+.... ........+. ...+.                         ..+++|
T Consensus       350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCcc
Confidence            42221111111100            000000 0000000000 00001                         124556


Q ss_pred             cEEEccCCCCCccCch-hhhccCCCCeEeCCCcccc-----ccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCE
Q 038396          268 TGIILSSNRFDRVIPT-SIANLKGLQVLNLDNNNLQ-----GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF  341 (456)
Q Consensus       268 ~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  341 (456)
                      ++|++++|.+++..+. .+..+++|+.|+|++|.++     +..+..|..+++|++|+|++|++++..|..+..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            6666666666654332 3445667777777777775     334456888999999999999999888888999999999


Q ss_pred             EeccCCcCcccCCCCCCCCCCCCcccCCCCC
Q 038396          342 FDVSDNYLTGAIPLGKQFATFDNTSFDGNSG  372 (456)
Q Consensus       342 L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~  372 (456)
                      |+|++|++++..|.... +.++.+++.+|..
T Consensus       509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQL  538 (844)
T ss_dssp             EEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred             eECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence            99999999976654433 6677777777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-36  Score=310.33  Aligned_cols=182  Identities=16%  Similarity=0.084  Sum_probs=136.8

Q ss_pred             cCCCCccEEecccccCcCCC-ChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec--cCccccccc
Q 038396          186 CRFSKLHIIDLSNNRFTGKL-PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS--KGRMMTYNK  262 (456)
Q Consensus       186 ~~l~~L~~L~ls~n~l~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  262 (456)
                      ..+++|++|++++|.+++.. ....+..+++|+.++++++.+.... ..+...    .......+....  .........
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGL----EELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTC----TTCCEEECTTSEEESTTTTTTTT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCC----CCCCeeECCCCccCCccChhhhh
Confidence            46789999999999998432 1355889999999999998763321 222111    111111110000  001112223


Q ss_pred             ccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccc-cCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCE
Q 038396          263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF  341 (456)
Q Consensus       263 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  341 (456)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..+..+++|+.
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence            46789999999999999889999999999999999999997 47889999999999999999999888999999999999


Q ss_pred             EeccCCcCcccCCCC-CCCCCCCCcccCCCCC
Q 038396          342 FDVSDNYLTGAIPLG-KQFATFDNTSFDGNSG  372 (456)
Q Consensus       342 L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~  372 (456)
                      |++++|++++..|.. ..++.++.+++.+|..
T Consensus       502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             EECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            999999999887754 4577788888888863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.4e-36  Score=305.58  Aligned_cols=344  Identities=22%  Similarity=0.247  Sum_probs=234.3

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE   92 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~   92 (456)
                      +...+++|+++|+++       .+|.. .++++.|++++|.+++..+.+|.++++|++|++++|.+++..|..|..++ +
T Consensus        30 ~~~~~~l~ls~~~L~-------~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~  101 (562)
T 3a79_B           30 NELESMVDYSNRNLT-------HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-D  101 (562)
T ss_dssp             ---CCEEECTTSCCC-------SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-T
T ss_pred             cCCCcEEEcCCCCCc-------cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-C
Confidence            445578888888877       34443 46788888888888877777888888888888888888877777788777 7


Q ss_pred             CcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCcCCcCCCccccCCCCC--CEEE
Q 038396           93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL--NVLI  169 (456)
Q Consensus        93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~  169 (456)
                      |++|++++|.++ .+|..  .+++|++|++++|++++. .|..|.++++|++|++++|.+++.   .+..+++|  ++|+
T Consensus       102 L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~  175 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL  175 (562)
T ss_dssp             CCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred             CCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEE
Confidence            888888888888 44544  678888888888888753 357788888888888888887643   33444444  7777


Q ss_pred             ccCCcc--cccCCCCCCc--------------------------------------------------------------
Q 038396          170 LRSNKF--YGIIKEPRTD--------------------------------------------------------------  185 (456)
Q Consensus       170 L~~n~l--~~~~~~~~~~--------------------------------------------------------------  185 (456)
                      +++|.+  ++..+..+..                                                              
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~  255 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT  255 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred             eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence            777776  4333222200                                                              


Q ss_pred             -----------------cCCCCccEEecccccCcCCCChhhh--------------------------------------
Q 038396          186 -----------------CRFSKLHIIDLSNNRFTGKLPSKSF--------------------------------------  210 (456)
Q Consensus       186 -----------------~~l~~L~~L~ls~n~l~~~~~~~~~--------------------------------------  210 (456)
                                       ...++|++|++++|.++|.+|...+                                      
T Consensus       256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred             ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence                             0012566677777777666654321                                      


Q ss_pred             --------------hCccccccccccCccccccccCCCCCccccccccccceeEeeccCcc---cccccccccccEEEcc
Q 038396          211 --------------LCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRM---MTYNKIPDILTGIILS  273 (456)
Q Consensus       211 --------------~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls  273 (456)
                                    ..+++|+.++++++.+.......+...    .......+........   ......+++|++|+++
T Consensus       336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL----KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC----SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             EEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc----CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence                          345566666666665533222111111    1111111111100100   1112336789999999


Q ss_pred             CCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCccc
Q 038396          274 SNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGA  352 (456)
Q Consensus       274 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~  352 (456)
                      +|.+++ .++..+..+++|++|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|+.|++++|+++..
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence            999988 4555688889999999999999877776554  69999999999999 7787777999999999999999954


Q ss_pred             CCC-CCCCCCCCCcccCCCCCCCCCCC
Q 038396          353 IPL-GKQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       353 ~p~-~~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      .+. ...++.++.+++.+|++.|+|+.
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          489 PDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            333 35677888999999999998864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.5e-37  Score=308.44  Aligned_cols=355  Identities=19%  Similarity=0.246  Sum_probs=218.2

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP   83 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   83 (456)
                      .||+.+    .++|++|||++|+++.   +.......+++|++|++++|++++..|++|.++++|++|++++|.+++..|
T Consensus        19 ~ip~~~----~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           19 SIPSGL----TAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             SCCSCC----CTTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             cccccC----CCCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence            456544    3578888888888762   111111236778888888888887777778888888888888888876655


Q ss_pred             hhhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccCCc-CcccCCccccCCCCCcEEeCcCCcCCcCCCccccC
Q 038396           84 QCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNL-FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT  161 (456)
Q Consensus        84 ~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  161 (456)
                      ..+..+. +|++|++++|.+++. .|..|..+++|++|++++|+ +....+..|.++++|++|++++|.+++..|..++.
T Consensus        92 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A           92 SWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             HHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             HHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence            5677777 788888888888753 45677778888888888887 44344457777888888888888877766666654


Q ss_pred             ------------------------CCCCCEEEccCCcccccCCCCCC-ccCC----------------------------
Q 038396          162 ------------------------IPNLNVLILRSNKFYGIIKEPRT-DCRF----------------------------  188 (456)
Q Consensus       162 ------------------------l~~L~~L~L~~n~l~~~~~~~~~-~~~l----------------------------  188 (456)
                                              +++|++|++++|++++....+.. ...+                            
T Consensus       171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (549)
T 2z81_A          171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI  250 (549)
T ss_dssp             CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred             cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence                                    45566666666666553110000 0011                            


Q ss_pred             -----------------------------------------------------------CCccEEecccccCcCCCChhh
Q 038396          189 -----------------------------------------------------------SKLHIIDLSNNRFTGKLPSKS  209 (456)
Q Consensus       189 -----------------------------------------------------------~~L~~L~ls~n~l~~~~~~~~  209 (456)
                                                                                 ++|+.|++++|.+. .+|...
T Consensus       251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~  329 (549)
T 2z81_A          251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF  329 (549)
T ss_dssp             TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred             ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence                                                                       22333444444443 344443


Q ss_pred             hhCccccccccccCcccccccc---CCCCCccccccccccceeEeeccCcc-----cccccccccccEEEccCCCCCccC
Q 038396          210 FLCLDAMKIVNTSQLRYLQDVI---SPYGQVSTDLISTYDYSLIMNSKGRM-----MTYNKIPDILTGIILSSNRFDRVI  281 (456)
Q Consensus       210 ~~~l~~l~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~~  281 (456)
                      +..+++|+.+++++|.+.....   ..+..    .....  .+....+...     ......+++|++|++++|+++. +
T Consensus       330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----l~~L~--~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l  402 (549)
T 2z81_A          330 SQHLKSLEFLDLSENLMVEEYLKNSACKGA----WPSLQ--TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M  402 (549)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHTCTTS----STTCC--EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-C
T ss_pred             HhcCccccEEEccCCccccccccchhhhhc----cccCc--EEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-C
Confidence            4445555555555554422110   00000    00000  0111111100     0112335667788888887775 5


Q ss_pred             chhhhccCCCCeEeCCCccccccCCccc------------------cCCCCCCeeeCCCCcccccCchhhhcCCCCCEEe
Q 038396          282 PTSIANLKGLQVLNLDNNNLQGHIPSCL------------------GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD  343 (456)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  343 (456)
                      |..+..+++|++|++++|++++ +|..+                  ..+++|++|+|++|+++ .+|. ...+++|++|+
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~  479 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMK  479 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEE
T ss_pred             ChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEe
Confidence            5566667777777777777652 22221                  25677888888888887 5665 45788888888


Q ss_pred             ccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCC
Q 038396          344 VSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       344 ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      +++|++++.+|.. ..++.++.+++.+|++.|+|+
T Consensus       480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            8888888777653 567788888899999988876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-36  Score=292.03  Aligned_cols=309  Identities=17%  Similarity=0.208  Sum_probs=240.7

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCC----CCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPV----PPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF   89 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~----~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   89 (456)
                      ++++++|++++|.++       .+|.    .+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+
T Consensus        44 l~~l~~l~l~~~~l~-------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             GCCCSEEEEESCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCceEEEecCCchh-------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            577888888888876       3443    26788888888888887777788888888888888888886666677777


Q ss_pred             CCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396           90 SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI  169 (456)
Q Consensus        90 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  169 (456)
                      + +|++|++++|.++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++.   .++.+++|+.|+
T Consensus       117 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~  192 (390)
T 3o6n_A          117 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN  192 (390)
T ss_dssp             T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred             C-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence            7 788888888888855555567888888888888888877777788888888888888888754   255677888888


Q ss_pred             ccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396          170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL  249 (456)
Q Consensus       170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (456)
                      +++|.+.+.       ...++|++|++++|.+. .+|..   ...+|+.++++++.+...                    
T Consensus       193 l~~n~l~~~-------~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--------------------  241 (390)
T 3o6n_A          193 VSYNLLSTL-------AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--------------------  241 (390)
T ss_dssp             CCSSCCSEE-------ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--------------------
T ss_pred             ccccccccc-------CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--------------------
Confidence            888887755       23457888888888877 44432   235677777777654211                    


Q ss_pred             EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396          250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI  329 (456)
Q Consensus       250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  329 (456)
                               .....++.|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|++|++++|+++ .+
T Consensus       242 ---------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~  310 (390)
T 3o6n_A          242 ---------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV  310 (390)
T ss_dssp             ---------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred             ---------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ec
Confidence                     112235679999999999999888899999999999999999984 5666788999999999999998 67


Q ss_pred             chhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          330 PQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       330 ~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      |..+..+++|+.|++++|+++.. | ...++.++.+++.+|++.|.+.
T Consensus       311 ~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchhH
Confidence            77788899999999999999855 3 3567788899999999988653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=298.06  Aligned_cols=111  Identities=25%  Similarity=0.348  Sum_probs=77.9

Q ss_pred             cccccEEEccCCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396          264 PDILTGIILSSNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF  342 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  342 (456)
                      +++|++|++++|.+++ .++..+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|
T Consensus       373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            4456666666666655 2223355566666666666666555554443  67888888888887 677777789999999


Q ss_pred             eccCCcCcccCCC--CCCCCCCCCcccCCCCCCCCCCC
Q 038396          343 DVSDNYLTGAIPL--GKQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       343 ~ls~N~l~~~~p~--~~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      ++++|+++. +|.  ...++.++.+++.+|++.|+|+.
T Consensus       450 ~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          450 NVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999999984 554  34577788888999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.3e-35  Score=300.95  Aligned_cols=332  Identities=20%  Similarity=0.181  Sum_probs=259.6

Q ss_pred             ccCCChhhhhhcCCCCCEEEccCCCCCCCC--cC----------------cc-----CCC-------CCCCCCcEEEccC
Q 038396            2 HGKIPKWLLDPSMQYLNALNLSHNLLTSSN--NL----------------QG-----PLP-------VPPPETILYLVSN   51 (456)
Q Consensus         2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~--~l----------------~~-----~~~-------~~~~~L~~L~ls~   51 (456)
                      ++..|..|..  +++|++|++++|+++...  .+                .+     .+|       ..+++|+.|++++
T Consensus       261 ~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          261 NVVGNDSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             CEECTTTTTT--CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             CccCcccccC--cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            3445677878  888999999988876110  00                00     122       2367888888888


Q ss_pred             CccccccchhhhcCCCCCeeecccCcCcc-ccC-hhhhhCC-CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCc
Q 038396           52 NSLTGEIPSWICNLNTVKNLVLSHNNLSG-VLP-QCLGNFS-DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ  128 (456)
Q Consensus        52 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~~~l~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~  128 (456)
                      |.+++..+..|.++++|++|++++|.+.. .++ ..+..+. +.|++|++++|++++..|..|..+++|++|++++|+++
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            88888778888888888888888887532 222 2233221 26899999999999888889999999999999999998


Q ss_pred             ccCC-ccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396          129 GRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS  207 (456)
Q Consensus       129 ~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  207 (456)
                      +.+| ..|.++++|++|++++|.+++..+..|..+++|++|++++|.+......+..+..+++|++|++++|.++ .++.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~  497 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NIND  497 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCCh
Confidence            7555 6888999999999999999888888899999999999999988743222333378899999999999998 6777


Q ss_pred             hhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhc
Q 038396          208 KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN  287 (456)
Q Consensus       208 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~  287 (456)
                      ..+..+++|+.+++++|.+.......+..                   ........++.|++|++++|.++.+++..|.+
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          498 DMLEGLEKLEILDLQHNNLARLWKHANPG-------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCGGGGSTTSTT-------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hhhccccccCEEeCCCCCccccchhhccC-------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            77899999999999998763322111110                   00011223577999999999999877778999


Q ss_pred             cCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhh-cCCCCCEEeccCCcCcccCCC
Q 038396          288 LKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLV-EFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       288 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      +++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+. .+++|+.|++++|++.|.++.
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99999999999999977777889999999999999999988877777 789999999999999999985

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=304.87  Aligned_cols=192  Identities=19%  Similarity=0.205  Sum_probs=137.3

Q ss_pred             cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccccc-CCCCCcc
Q 038396          160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI-SPYGQVS  238 (456)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~  238 (456)
                      ..+++|++|++++|.+++....+..+..+++|++|++++|.+. .++.. +..+++|+.++++++.+..... ..+... 
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-  420 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-  420 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC-
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcC-
Confidence            3467788888888887755311112256778888888888877 44444 7777788888887766533211 011110 


Q ss_pred             ccccccccceeEeeccCc---ccccccccccccEEEccCCCCC-ccCchhhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396          239 TDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFD-RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN  314 (456)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  314 (456)
                         ....  .+.......   .......+++|++|++++|.+. +..|..+..+++|+.|++++|++++..|..|..+++
T Consensus       421 ---~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          421 ---RNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             ---TTCC--EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ---CCCC--EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence               0000  111111111   1112233678999999999997 467888999999999999999999888999999999


Q ss_pred             CCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCC
Q 038396          315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQF  359 (456)
Q Consensus       315 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  359 (456)
                      |++|++++|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            999999999999888888999999999999999999999975433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7e-35  Score=281.50  Aligned_cols=318  Identities=21%  Similarity=0.206  Sum_probs=259.9

Q ss_pred             CCChh-hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            4 KIPKW-LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         4 ~ip~~-~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      .+|+. |..  +++|++|+|++|.++.   +.......+++|++|++++|.+++..|..|.++++|++|++++|.++ .+
T Consensus        59 ~l~~~~~~~--l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l  132 (390)
T 3o6n_A           59 KLPAALLDS--FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL  132 (390)
T ss_dssp             EECTHHHHH--CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             hCChhHhcc--cccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cC
Confidence            46665 567  9999999999999872   22122234889999999999999888899999999999999999999 55


Q ss_pred             Chh-hhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccC
Q 038396           83 PQC-LGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT  161 (456)
Q Consensus        83 ~~~-~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  161 (456)
                      |.. +..++ +|++|++++|.+++..+..|..+++|++|++++|++++.   .+..+++|++|++++|.+++     +..
T Consensus       133 ~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~  203 (390)
T 3o6n_A          133 PRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAI  203 (390)
T ss_dssp             CTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EEC
T ss_pred             CHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCC
Confidence            554 57787 899999999999988888899999999999999999854   36678999999999999874     344


Q ss_pred             CCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccc
Q 038396          162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL  241 (456)
Q Consensus       162 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~  241 (456)
                      .++|++|++++|.+......     ..++|+.|++++|.+++ .  ..+..+++|+.++++++.+.......+       
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------  268 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEKIMYHPF-------  268 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECC-----CCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCEEESGGG-------
T ss_pred             CCcceEEECCCCeeeecccc-----ccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcCCCcChhHc-------
Confidence            56899999999999877432     34799999999999984 3  458889999999999987633211111       


Q ss_pred             cccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCC
Q 038396          242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS  321 (456)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  321 (456)
                                          ..+++|++|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       269 --------------------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          269 --------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  326 (390)
T ss_dssp             --------------------TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             --------------------cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence                                125679999999999998 4556788999999999999999 677778999999999999


Q ss_pred             CCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          322 NNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       322 ~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      +|+++.. +  +..+++|+.|++++|++++.... ..+..+....+.+++..|.++
T Consensus       327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            9999854 3  67889999999999999986543 344556666677888778754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-35  Score=301.84  Aligned_cols=308  Identities=17%  Similarity=0.208  Sum_probs=193.4

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCC----CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVP----PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF   89 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~----~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   89 (456)
                      +++++.|++++|.++       .+|..    +++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|..|+.+
T Consensus        50 l~~l~~l~l~~~~l~-------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCCCC-------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            456666666666654       33321    5666666666666666555666666666666666666665555555666


Q ss_pred             CCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396           90 SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI  169 (456)
Q Consensus        90 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  169 (456)
                      + +|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..   ++.+++|+.|+
T Consensus       123 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~  198 (597)
T 3oja_B          123 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN  198 (597)
T ss_dssp             T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred             C-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence            5 6666666666666554455566666666666666666666666666666666666666666432   34455666666


Q ss_pred             ccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396          170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL  249 (456)
Q Consensus       170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (456)
                      +++|.+.+.       ...++|+.|++++|.+. .++...   ..+|+.|++++|.+..                     
T Consensus       199 l~~n~l~~l-------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~---------------------  246 (597)
T 3oja_B          199 VSYNLLSTL-------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD---------------------  246 (597)
T ss_dssp             CCSSCCSEE-------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC---------------------
T ss_pred             cccCccccc-------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC---------------------
Confidence            666665543       22345566666666554 222211   1345555555544311                     


Q ss_pred             EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396          250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI  329 (456)
Q Consensus       250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  329 (456)
                              ......++.|+.|+|++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+
T Consensus       247 --------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i  316 (597)
T 3oja_B          247 --------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV  316 (597)
T ss_dssp             --------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred             --------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-cc
Confidence                    0111224568888888888877777777778888888888888874 4555667778888888888877 56


Q ss_pred             chhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCC
Q 038396          330 PQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGR  376 (456)
Q Consensus       330 ~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~  376 (456)
                      |..+..+++|+.|++++|.+++..  ...++.+..+++.+|++.|.+
T Consensus       317 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          317 ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence            666777788888888888877542  234566777777777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=291.97  Aligned_cols=329  Identities=20%  Similarity=0.193  Sum_probs=207.2

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP   83 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   83 (456)
                      .||+.+    .++|++|+|++|.++..   .......+++|++|++++|++++..|.+|.++++|++|++++|+++ .+|
T Consensus        14 ~ip~~~----~~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp   85 (520)
T 2z7x_B           14 HVPKDL----SQKTTILNISQNYISEL---WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS   85 (520)
T ss_dssp             SCCCSC----CTTCSEEECCSSCCCCC---CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred             cccccc----cccccEEECCCCccccc---ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence            356544    24677777777777621   0000122667777777777777666777777777777777777777 555


Q ss_pred             hhhhhCCCCCcEEEccCCccce-eCCccccCCCCccEEeccCCcCcccCCccccCCCCC--cEEeCcCCcC--CcCCCcc
Q 038396           84 QCLGNFSDELSVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL--EFLDLGNNQI--SDTFPSW  158 (456)
Q Consensus        84 ~~~~~l~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~~L~Ls~n~i--~~~~~~~  158 (456)
                      ..  .+. +|++|++++|.+++ ..|..|+.+++|++|++++|++++   ..+..+++|  ++|++++|.+  .+..|..
T Consensus        86 ~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           86 CH--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             CC--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             cc--ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence            54  555 67777777777775 356677777777777777777653   223334444  4444444444  2233322


Q ss_pred             ccCCC---------------------------------------------------------------------------
Q 038396          159 LGTIP---------------------------------------------------------------------------  163 (456)
Q Consensus       159 ~~~l~---------------------------------------------------------------------------  163 (456)
                      +..+.                                                                           
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  239 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR  239 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred             ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence            22211                                                                           


Q ss_pred             --------CCCEEEccCCcccccCCCCC--------------------------------------------------C-
Q 038396          164 --------NLNVLILRSNKFYGIIKEPR--------------------------------------------------T-  184 (456)
Q Consensus       164 --------~L~~L~L~~n~l~~~~~~~~--------------------------------------------------~-  184 (456)
                              +|++|++++|++.+..+..+                                                  . 
T Consensus       240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~  319 (520)
T 2z7x_B          240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC  319 (520)
T ss_dssp             HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred             HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence                    33444444444332222111                                                  0 


Q ss_pred             ccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccc--cccCCCCCccccccccccceeEeeccC--ccccc
Q 038396          185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ--DVISPYGQVSTDLISTYDYSLIMNSKG--RMMTY  260 (456)
Q Consensus       185 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  260 (456)
                      ...+++|++|++++|.+++.+| ..+..+++|+.+++++|.+..  .....+..    ........+......  .....
T Consensus       320 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          320 PSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQ----MKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----CTTCCEEECCSSCCBCCGGGCS
T ss_pred             hhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhh----CCCCCEEECCCCcCCcccccch
Confidence            1466788888888888885555 346778888888888876632  10000110    001111111111000  11111


Q ss_pred             ccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh-hhcCCCC
Q 038396          261 NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ-LVEFTFL  339 (456)
Q Consensus       261 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L  339 (456)
                      ...++.|++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  470 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL  470 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence            23367899999999999887666554  79999999999999 88888889999999999999999 56654 8899999


Q ss_pred             CEEeccCCcCcccCCC
Q 038396          340 EFFDVSDNYLTGAIPL  355 (456)
Q Consensus       340 ~~L~ls~N~l~~~~p~  355 (456)
                      ++|++++|+++|.++.
T Consensus       471 ~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          471 QKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CEEECCSSCBCCCHHH
T ss_pred             cEEECcCCCCcccCCc
Confidence            9999999999998874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.6e-34  Score=269.22  Aligned_cols=306  Identities=20%  Similarity=0.283  Sum_probs=253.5

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN   88 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   88 (456)
                      +..  +++|++|++++|.++....+     ..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..
T Consensus        40 ~~~--l~~L~~L~l~~~~i~~~~~~-----~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~  108 (347)
T 4fmz_A           40 QEE--LESITKLVVAGEKVASIQGI-----EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQN  108 (347)
T ss_dssp             HHH--HTTCSEEECCSSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred             chh--cccccEEEEeCCccccchhh-----hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcC
Confidence            446  88999999999999733222     228899999999999995443  9999999999999999984 44 5888


Q ss_pred             CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396           89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL  168 (456)
Q Consensus        89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  168 (456)
                      ++ +|++|++++|.+++..+  +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus       109 l~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  182 (347)
T 4fmz_A          109 LT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL  182 (347)
T ss_dssp             CT-TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             CC-cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence            88 89999999999985533  889999999999999766444 448999999999999999985543  8899999999


Q ss_pred             EccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccce
Q 038396          169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS  248 (456)
Q Consensus       169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (456)
                      ++++|.+.+..+  +  ..+++|+.|++++|.++ .++.  +..+++|+.++++++.+.....                 
T Consensus       183 ~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~-----------------  238 (347)
T 4fmz_A          183 SLNYNQIEDISP--L--ASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP-----------------  238 (347)
T ss_dssp             ECTTSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG-----------------
T ss_pred             EccCCccccccc--c--cCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc-----------------
Confidence            999999987644  3  77899999999999998 4443  7888999999999876522110                 


Q ss_pred             eEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccccc
Q 038396          249 LIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ  328 (456)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  328 (456)
                                  ...+++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       239 ------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          239 ------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             ------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred             ------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence                        12256799999999999884  4688999999999999999854  4688999999999999999988


Q ss_pred             CchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCC
Q 038396          329 IPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSG  372 (456)
Q Consensus       329 ~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~  372 (456)
                      .|..+..+++|++|++++|++++..| ...++.++.+++.+|+.
T Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             ChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            88999999999999999999998777 55678888888888863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-34  Score=290.09  Aligned_cols=318  Identities=23%  Similarity=0.223  Sum_probs=221.2

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +...+++++++|.+++ +|..+.  ++|++|++++|.+++..|..|..++ +|++|++++|.+++..|..|.++++|++|
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            4456899999999995 676554  8999999999999977778899998 89999999999999989999999999999


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCCCCCCccCCCCc--cEEecc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL--HIIDLS  197 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L--~~L~ls  197 (456)
                      ++++|+++ .+|..  .+++|++|++++|.+++. .|..|+++++|++|++++|++.+.   .+  ..+++|  ++|+++
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~--~~l~~L~L~~L~L~  177 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL--LPVAHLHLSCILLD  177 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT--GGGTTSCEEEEEEE
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch--hhhhhceeeEEEee
Confidence            99999999 55655  899999999999999864 468999999999999999999763   33  555666  999999


Q ss_pred             cccC--cCCCChh-------------------------hhhCcccccccc------------------------------
Q 038396          198 NNRF--TGKLPSK-------------------------SFLCLDAMKIVN------------------------------  220 (456)
Q Consensus       198 ~n~l--~~~~~~~-------------------------~~~~l~~l~~l~------------------------------  220 (456)
                      +|.+  ++..|..                         .+..+.+|+.++                              
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9988  5443322                         111233333333                              


Q ss_pred             -------------------------ccCccccccccCCC-----CCccc-----------ccc---------ccccceeE
Q 038396          221 -------------------------TSQLRYLQDVISPY-----GQVST-----------DLI---------STYDYSLI  250 (456)
Q Consensus       221 -------------------------l~~~~~~~~~~~~~-----~~~~~-----------~~~---------~~~~~~~~  250 (456)
                                               ++++.+.......+     .....           ..+         ........
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence                                     33333211111111     00000           000         00011122


Q ss_pred             eeccCc-ccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc--CCccccCCCCCCeeeCCCCcccc
Q 038396          251 MNSKGR-MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH--IPSCLGNLTNLESLDLSNNRFSG  327 (456)
Q Consensus       251 ~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~  327 (456)
                      ...... ...+...+++|++|++++|.+++..|..+..+++|+.|++++|++++.  .|..+..+++|++|++++|++++
T Consensus       338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence            222211 111124467788888888888887777888888888888888888753  34567788888888888888886


Q ss_pred             cCch-hhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCC
Q 038396          328 QIPQ-QLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNS  371 (456)
Q Consensus       328 ~~~~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~  371 (456)
                      .+|. .+..+++|++|++++|.+++.+|.... +.++.+++.+|.
T Consensus       418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~  461 (562)
T 3a79_B          418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNR  461 (562)
T ss_dssp             CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSC
T ss_pred             ccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCc
Confidence            4554 466777888888888887776664322 456666666664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.3e-34  Score=291.64  Aligned_cols=319  Identities=21%  Similarity=0.189  Sum_probs=262.7

Q ss_pred             CCChh-hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396            4 KIPKW-LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL   82 (456)
Q Consensus         4 ~ip~~-~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   82 (456)
                      .+|+. |..  +++|++|+|++|.|+.   +.......+++|+.|++++|.+++..|..|.++++|++|+|++|.+++..
T Consensus        65 ~lp~~~~~~--l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  139 (597)
T 3oja_B           65 KLPAALLDS--FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP  139 (597)
T ss_dssp             EECTHHHHH--CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCHHHHcc--CCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence            45654 566  9999999999999872   21112234889999999999999988889999999999999999999544


Q ss_pred             ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396           83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI  162 (456)
Q Consensus        83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  162 (456)
                      +..|..++ +|++|++++|.+++..|..|..+++|++|++++|.+++..   +..+++|+.|++++|.+++     +...
T Consensus       140 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~  210 (597)
T 3oja_B          140 RGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIP  210 (597)
T ss_dssp             TTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECC
T ss_pred             HHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCC
Confidence            44567887 8999999999999988989999999999999999999642   5678899999999999874     3456


Q ss_pred             CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396          163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI  242 (456)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~  242 (456)
                      ++|+.|++++|.+..+....     .++|+.|++++|.+++.   ..+..+++|+.|++++|.+.......+        
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~--------  274 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF--------  274 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG--------
T ss_pred             chhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh--------
Confidence            78999999999998775432     36899999999999852   458889999999999987633222111        


Q ss_pred             ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCC
Q 038396          243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN  322 (456)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  322 (456)
                                         ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++
T Consensus       275 -------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~  333 (597)
T 3oja_B          275 -------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH  333 (597)
T ss_dssp             -------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred             -------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCC
Confidence                               125779999999999998 4667788999999999999999 7788889999999999999


Q ss_pred             CcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       323 N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      |.+++. +  +..+++|+.|++++|+++|.+.. ..+..+....+.+++..|+.+
T Consensus       334 N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          334 NSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            999854 3  67789999999999999987643 245566667788999899864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=7e-34  Score=268.31  Aligned_cols=285  Identities=20%  Similarity=0.270  Sum_probs=202.6

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS   94 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~   94 (456)
                      +++.++++++.++       .+|.. .++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..++ +|+
T Consensus        34 ~l~~l~~~~~~l~-------~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-------AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQ  105 (332)
T ss_dssp             ETTEEECCSSCCS-------SCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCC
T ss_pred             cCCEEECCCCCcc-------ccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCC
Confidence            6899999999886       44443 56889999999999877778899999999999999999877788888888 899


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc--CCCccccCCCCCCEEEccC
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFPSWLGTIPNLNVLILRS  172 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~  172 (456)
                      +|++++|.++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.++.  ..+..+..+ +|++|++++
T Consensus       106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            9999999988 4554443  789999999999987766778889999999999998863  667777777 899999999


Q ss_pred             CcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEee
Q 038396          173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN  252 (456)
Q Consensus       173 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (456)
                      |++++++.. .    .++|++|++++|.++ .++...+..+++                                     
T Consensus       182 n~l~~l~~~-~----~~~L~~L~l~~n~i~-~~~~~~l~~l~~-------------------------------------  218 (332)
T 2ft3_A          182 AKLTGIPKD-L----PETLNELHLDHNKIQ-AIELEDLLRYSK-------------------------------------  218 (332)
T ss_dssp             SBCSSCCSS-S----CSSCSCCBCCSSCCC-CCCTTSSTTCTT-------------------------------------
T ss_pred             CCCCccCcc-c----cCCCCEEECCCCcCC-ccCHHHhcCCCC-------------------------------------
Confidence            998875432 2    368889999999888 444333444443                                     


Q ss_pred             ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396          253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ  332 (456)
Q Consensus       253 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  332 (456)
                                    |++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus       219 --------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          219 --------------LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             --------------CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             --------------CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence                          556666666666655556666666777777777666 55666666666777777777666544444


Q ss_pred             hhc------CCCCCEEeccCCcCc--ccCCCC-CCCCCCCCcccCCC
Q 038396          333 LVE------FTFLEFFDVSDNYLT--GAIPLG-KQFATFDNTSFDGN  370 (456)
Q Consensus       333 l~~------l~~L~~L~ls~N~l~--~~~p~~-~~~~~l~~~~~~~n  370 (456)
                      +..      .+.|+.|++++|++.  +..|.. ..++.++.+.+.+|
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            433      245666677776665  222221 23444444445444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.2e-35  Score=271.62  Aligned_cols=249  Identities=27%  Similarity=0.376  Sum_probs=201.8

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccC-CccccccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSN-NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS   90 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   90 (456)
                      .++++|+|++|.++...    .+|..   +++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~~----~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPY----PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCE----ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCc----ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            57999999999986200    34432   78999999995 999999999999999999999999999999999999998


Q ss_pred             CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCC-CCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396           91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS-KLEFLDLGNNQISDTFPSWLGTIPNLNVLI  169 (456)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  169 (456)
                       +|++|++++|.+++.+|..|..+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..++ |++|+
T Consensus       126 -~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          126 -TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             -TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             -CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence             899999999999999999999999999999999999999999999998 999999999999999999999887 99999


Q ss_pred             ccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396          170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL  249 (456)
Q Consensus       170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (456)
                      +++|++++..+..+  ..+++|+.|++++|.+++.++                                           
T Consensus       204 Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-------------------------------------------  238 (313)
T 1ogq_A          204 LSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLG-------------------------------------------  238 (313)
T ss_dssp             CCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGG-------------------------------------------
T ss_pred             CcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecC-------------------------------------------
Confidence            99999988766555  677888888888887763222                                           


Q ss_pred             EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396          250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI  329 (456)
Q Consensus       250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  329 (456)
                                                        .+..+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+
T Consensus       239 ----------------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          239 ----------------------------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             ----------------------------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ----------------------------------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence                                              1334455666666666666666666666666666666666666665


Q ss_pred             chhhhcCCCCCEEeccCCcC
Q 038396          330 PQQLVEFTFLEFFDVSDNYL  349 (456)
Q Consensus       330 ~~~l~~l~~L~~L~ls~N~l  349 (456)
                      |.. ..+++|+.+++++|+.
T Consensus       285 p~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSSE
T ss_pred             CCC-ccccccChHHhcCCCC
Confidence            554 5566666666666663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.9e-33  Score=263.00  Aligned_cols=286  Identities=21%  Similarity=0.232  Sum_probs=221.4

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS   94 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~   94 (456)
                      +++.++++++.++       .+|.. .+.++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..++ +|+
T Consensus        32 ~l~~l~~~~~~l~-------~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~  103 (330)
T 1xku_A           32 HLRVVQCSDLGLE-------KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLE  103 (330)
T ss_dssp             ETTEEECTTSCCC-------SCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCC
T ss_pred             CCeEEEecCCCcc-------ccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCC
Confidence            7999999999987       44543 57899999999999988777899999999999999999977788999998 899


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc--CCCccccCCCCCCEEEccC
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFPSWLGTIPNLNVLILRS  172 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~  172 (456)
                      +|++++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.++.  ..+..+..+++|++|++++
T Consensus       104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            9999999998 4555543  799999999999998878889999999999999999964  6678889999999999999


Q ss_pred             CcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEee
Q 038396          173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN  252 (456)
Q Consensus       173 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (456)
                      |.++.++..     ..++|++|++++|.+++ ++...+..+                                       
T Consensus       181 n~l~~l~~~-----~~~~L~~L~l~~n~l~~-~~~~~~~~l---------------------------------------  215 (330)
T 1xku_A          181 TNITTIPQG-----LPPSLTELHLDGNKITK-VDAASLKGL---------------------------------------  215 (330)
T ss_dssp             SCCCSCCSS-----CCTTCSEEECTTSCCCE-ECTGGGTTC---------------------------------------
T ss_pred             CccccCCcc-----ccccCCEEECCCCcCCc-cCHHHhcCC---------------------------------------
Confidence            999876432     23789999999999884 332333333                                       


Q ss_pred             ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396          253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ  332 (456)
Q Consensus       253 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  332 (456)
                                  ++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus       216 ------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          216 ------------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             ------------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             ------------CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence                        34777778888887777767778888888888888887 67777778888888888888887655555


Q ss_pred             hhc------CCCCCEEeccCCcCccc-C-CCC-CCCCCCCCcccCCC
Q 038396          333 LVE------FTFLEFFDVSDNYLTGA-I-PLG-KQFATFDNTSFDGN  370 (456)
Q Consensus       333 l~~------l~~L~~L~ls~N~l~~~-~-p~~-~~~~~l~~~~~~~n  370 (456)
                      |..      .+.|+.+++++|++... + |.. ..+..++.+++.+|
T Consensus       283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            543      36777888888887632 2 211 22344445555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.7e-33  Score=263.88  Aligned_cols=288  Identities=23%  Similarity=0.320  Sum_probs=240.8

Q ss_pred             CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396            5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ   84 (456)
Q Consensus         5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   84 (456)
                      +| .+..  +++|++|++++|++++...     ...+++|++|++++|.+++ + +.+..+++|++|++++|.++ .++.
T Consensus        59 ~~-~~~~--~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~  127 (347)
T 4fmz_A           59 IQ-GIEY--LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP  127 (347)
T ss_dssp             CT-TGGG--CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG
T ss_pred             ch-hhhh--cCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh
Confidence            44 4778  9999999999999983322     2348899999999999995 3 36999999999999999998 4444


Q ss_pred             hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396           85 CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN  164 (456)
Q Consensus        85 ~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  164 (456)
                       +..++ +|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++
T Consensus       128 -~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~  200 (347)
T 4fmz_A          128 -LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTS  200 (347)
T ss_dssp             -GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTT
T ss_pred             -hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCc
Confidence             77887 89999999997664444 48999999999999999985443  8899999999999999985433  889999


Q ss_pred             CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccc
Q 038396          165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST  244 (456)
Q Consensus       165 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~  244 (456)
                      |+.|++++|.+.+..+    +..+++|++|++++|.++ .++.  +..+++|+.++++++.+...               
T Consensus       201 L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~---------------  258 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP----VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI---------------  258 (347)
T ss_dssp             CCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC---------------
T ss_pred             cceeecccCCCCCCch----hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC---------------
Confidence            9999999999987654    378899999999999998 5554  88899999999998765221               


Q ss_pred             ccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCc
Q 038396          245 YDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR  324 (456)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  324 (456)
                                    .....+++|++|++++|.+++.  ..+..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus       259 --------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          259 --------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             --------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             --------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence                          0112257799999999999985  468899999999999999998889999999999999999999


Q ss_pred             ccccCchhhhcCCCCCEEeccCCcCc
Q 038396          325 FSGQIPQQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       325 l~~~~~~~l~~l~~L~~L~ls~N~l~  350 (456)
                      +++..|  +..+++|+.|++++|+++
T Consensus       323 l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          323 ITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cccccC--hhhhhccceeehhhhccc
Confidence            996655  889999999999999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-33  Score=284.83  Aligned_cols=202  Identities=15%  Similarity=0.120  Sum_probs=170.3

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE   92 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~   92 (456)
                      |+...+.|.++|.++       .+|.. .+.+++|++++|.+++..|..|.++++|++|++++|.+++..|.+|..+. +
T Consensus         4 C~~~~~c~~~~~~l~-------~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~   75 (549)
T 2z81_A            4 CDASGVCDGRSRSFT-------SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-S   75 (549)
T ss_dssp             ECTTSEEECTTSCCS-------SCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred             CCCCceEECCCCccc-------cccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-c
Confidence            566677899999987       55554 57899999999999988889999999999999999999988888899998 8


Q ss_pred             CcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCc-CCcCCCccccCCCCCCEEEc
Q 038396           93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQ-ISDTFPSWLGTIPNLNVLIL  170 (456)
Q Consensus        93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L  170 (456)
                      |++|++++|.+++..+..|.++++|++|++++|++++. .|..+..+++|++|++++|. +....+..++.+++|++|++
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence            99999999999988888899999999999999999863 56789999999999999998 44444468999999999999


Q ss_pred             cCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.+++..+..+  ..+++|++|++++|.+. .+|...+..+++|+.++++++.+
T Consensus       156 ~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          156 KALSLRNYQSQSL--KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EETTCCEECTTTT--TTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred             cCCcccccChhhh--hccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence            9999998877666  66777777777777765 55555555667777777766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.1e-33  Score=274.09  Aligned_cols=326  Identities=22%  Similarity=0.313  Sum_probs=213.9

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN   88 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   88 (456)
                      +..  +++|++|||++|.++....     ...+++|++|++++|.+++..+  +.++++|++|++++|.+++. +. +..
T Consensus        64 ~~~--l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~  132 (466)
T 1o6v_A           64 VEY--LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKN  132 (466)
T ss_dssp             GGG--CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred             hhh--hcCCCEEECCCCccCCchh-----hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcC
Confidence            555  6677777777776652211     1225667777777777664433  66677777777777776633 32 556


Q ss_pred             CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396           89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL  168 (456)
Q Consensus        89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  168 (456)
                      ++ +|++|++++|.+++. + .+..+++|++|+++ |.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|++|
T Consensus       133 l~-~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  204 (466)
T 1o6v_A          133 LT-NLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  204 (466)
T ss_dssp             CT-TCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CC-CCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEE
Confidence            65 677777777766642 2 35555555555554 233322  1267777888888888887643  346777888888


Q ss_pred             EccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccce
Q 038396          169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS  248 (456)
Q Consensus       169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (456)
                      ++++|.+.+..+  +  ..+++|++|++++|.++ .++  .+..+++|+.++++++.+.....  +..    ........
T Consensus       205 ~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~  271 (466)
T 1o6v_A          205 IATNNQISDITP--L--GILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLAP--LSG----LTKLTELK  271 (466)
T ss_dssp             ECCSSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GTT----CTTCSEEE
T ss_pred             EecCCccccccc--c--cccCCCCEEECCCCCcc-cch--hhhcCCCCCEEECCCCccccchh--hhc----CCCCCEEE
Confidence            888887776643  2  55777888888888776 333  36677777777777765532211  100    00111111


Q ss_pred             eEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccccc
Q 038396          249 LIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ  328 (456)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  328 (456)
                      +.......... ...++.|++|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|++|++++|++++.
T Consensus       272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          272 LGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            11110011111 2336779999999999988544  7889999999999999986655  78899999999999999864


Q ss_pred             CchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCC
Q 038396          329 IPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLC  374 (456)
Q Consensus       329 ~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc  374 (456)
                        ..+..+++|+.|++++|++++..| ...++.++.+.+.+|++..
T Consensus       347 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          347 --SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             --hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence              468899999999999999998887 5667788888888887654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.8e-32  Score=280.15  Aligned_cols=342  Identities=19%  Similarity=0.171  Sum_probs=249.2

Q ss_pred             CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396            5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ   84 (456)
Q Consensus         5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   84 (456)
                      .|..|.+  +++|++|||++|+|+   .+.......+++|++|+|++|++++..+.+|.++++|++|++++|++++..+.
T Consensus        68 ~~~~f~~--l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~  142 (635)
T 4g8a_A           68 GSYSFFS--FPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF  142 (635)
T ss_dssp             CTTTTTT--CTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred             CHHHHhC--CCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence            3457888  999999999999997   22222334488999999999999988888899999999999999999966666


Q ss_pred             hhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccCCcCcccCCccccCC-------------------------
Q 038396           85 CLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC-------------------------  138 (456)
Q Consensus        85 ~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-------------------------  138 (456)
                      .|++++ +|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+                         
T Consensus       143 ~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~  221 (635)
T 4g8a_A          143 PIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  221 (635)
T ss_dssp             CCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             hhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence            788888 899999999999764 57888899999999999998875544332211                         


Q ss_pred             --------------------------------------------------------------------------------
Q 038396          139 --------------------------------------------------------------------------------  138 (456)
Q Consensus       139 --------------------------------------------------------------------------------  138 (456)
                                                                                                      
T Consensus       222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~  301 (635)
T 4g8a_A          222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL  301 (635)
T ss_dssp             TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred             cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence                                                                                            


Q ss_pred             --------------------------CCCcEEeCcCCcCCcCCC-------------------ccccCCCCCCEEEccCC
Q 038396          139 --------------------------SKLEFLDLGNNQISDTFP-------------------SWLGTIPNLNVLILRSN  173 (456)
Q Consensus       139 --------------------------~~L~~L~Ls~n~i~~~~~-------------------~~~~~l~~L~~L~L~~n  173 (456)
                                                ..|+.|++.+|.+....+                   .....+++|+.|++++|
T Consensus       302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n  381 (635)
T 4g8a_A          302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN  381 (635)
T ss_dssp             TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred             hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence                                      122333333333221111                   01124567788888887


Q ss_pred             cccccCCC-----------------------CCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccc
Q 038396          174 KFYGIIKE-----------------------PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDV  230 (456)
Q Consensus       174 ~l~~~~~~-----------------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~  230 (456)
                      .+......                       ...+..+++|+.++++.+......+...+..+..++.++++.+......
T Consensus       382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~  461 (635)
T 4g8a_A          382 GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  461 (635)
T ss_dssp             CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence            76432110                       1113567888999998888776667677888888888888877653322


Q ss_pred             cCCCCCccccccccccceeEee--ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCcc
Q 038396          231 ISPYGQVSTDLISTYDYSLIMN--SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSC  308 (456)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  308 (456)
                      ...+....    ......+...  ...........+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..
T Consensus       462 ~~~~~~~~----~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  537 (635)
T 4g8a_A          462 NGIFNGLS----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  537 (635)
T ss_dssp             TTTTTTCT----TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred             ccccccch----hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence            22211111    0000000000  00111222334678999999999999999999999999999999999999888999


Q ss_pred             ccCCCCCCeeeCCCCcccccCchhhhcC-CCCCEEeccCCcCcccCCCC
Q 038396          309 LGNLTNLESLDLSNNRFSGQIPQQLVEF-TFLEFFDVSDNYLTGAIPLG  356 (456)
Q Consensus       309 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~~  356 (456)
                      |..+++|++|+|++|+|++..|..+..+ ++|++|++++|+++|.|...
T Consensus       538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence            9999999999999999999999999888 68999999999999988753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=266.32  Aligned_cols=278  Identities=16%  Similarity=0.147  Sum_probs=218.9

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE   92 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~   92 (456)
                      |+.....|+++|.++       .+|.. .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..++ +
T Consensus        30 C~~~~~c~~~~~~l~-------~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~  101 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-------SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-S  101 (353)
T ss_dssp             ECTTSEEECCSTTCS-------SCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred             CCCCeEeeCCCCCcc-------cccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-C
Confidence            677777888888887       55554 56899999999999877666888999999999999999877777788887 8


Q ss_pred             CcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCC-ccccCCCCCcEEeCcCC-cCCcCCCccccCCCCCCEEEc
Q 038396           93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNN-QISDTFPSWLGTIPNLNVLIL  170 (456)
Q Consensus        93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L  170 (456)
                      |++|++++|.+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .++...+..++.+++|++|++
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            9999999999986655568888999999999999885444 47888899999999988 477666778888899999999


Q ss_pred             cCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeE
Q 038396          171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLI  250 (456)
Q Consensus       171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (456)
                      ++|.+.+..+..+  ..+++|++|++++|.++ .+|...+..                                      
T Consensus       182 ~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~--------------------------------------  220 (353)
T 2z80_A          182 DASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIFVDV--------------------------------------  220 (353)
T ss_dssp             EETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHHHHH--------------------------------------
T ss_pred             CCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhhhhh--------------------------------------
Confidence            9999888766666  77888999999998886 555433322                                      


Q ss_pred             eeccCcccccccccccccEEEccCCCCCccCchhh---hccCCCCeEeCCCccccc----cCCccccCCCCCCeeeCCCC
Q 038396          251 MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI---ANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNN  323 (456)
Q Consensus       251 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~N  323 (456)
                                   +++|++|++++|.+++..+..+   .....++.++++++.+++    .+|..+..+++|++|++++|
T Consensus       221 -------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          221 -------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             -------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             -------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence                         2447777777777776544433   235667788888887764    46778889999999999999


Q ss_pred             cccccCchh-hhcCCCCCEEeccCCcCcccCC
Q 038396          324 RFSGQIPQQ-LVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       324 ~l~~~~~~~-l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      +++ .+|.. +..+++|++|++++|+++|.+|
T Consensus       288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999 55555 5889999999999999998887

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=5.1e-32  Score=255.54  Aligned_cols=267  Identities=21%  Similarity=0.250  Sum_probs=219.9

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      .+++.++++++.++ .+|..+  .++|++|++++|.+++..|..+..++ +|++|++++|.+++..|..|..+++|++|+
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            36889999999888 556555  36889999999999866677888888 899999999999988888899999999999


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccc--cCCCCCCccCCCCccEEecccc
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYG--IIKEPRTDCRFSKLHIIDLSNN  199 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~ls~n  199 (456)
                      +++|+++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.++.  ..+..+  ..+ +|++|++++|
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEA  182 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSS
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCC
Confidence            9999988 5555544  789999999999987766778889999999999998864  433333  555 8889999998


Q ss_pred             cCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCc
Q 038396          200 RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR  279 (456)
Q Consensus       200 ~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  279 (456)
                      .++ .+|...                                                      ++.|++|++++|.+++
T Consensus       183 ~l~-~l~~~~------------------------------------------------------~~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          183 KLT-GIPKDL------------------------------------------------------PETLNELHLDHNKIQA  207 (332)
T ss_dssp             BCS-SCCSSS------------------------------------------------------CSSCSCCBCCSSCCCC
T ss_pred             CCC-ccCccc------------------------------------------------------cCCCCEEECCCCcCCc
Confidence            887 455321                                                      2358899999999999


Q ss_pred             cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC--
Q 038396          280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK--  357 (456)
Q Consensus       280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~--  357 (456)
                      ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+...  
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            88889999999999999999999888889999999999999999999 788889999999999999999996654321  


Q ss_pred             -----CCCCCCCcccCCCCCCC
Q 038396          358 -----QFATFDNTSFDGNSGLC  374 (456)
Q Consensus       358 -----~~~~l~~~~~~~n~~lc  374 (456)
                           .+..+..+++.+||..+
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSCG
T ss_pred             cccccccccccceEeecCcccc
Confidence                 14556778899999764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=7.8e-32  Score=254.13  Aligned_cols=270  Identities=21%  Similarity=0.272  Sum_probs=225.8

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      .+++.++++++.++ .+|..+.  +.|++|++++|.+++..+..+..++ +|++|++++|.+++..|..|..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            47899999999988 5565443  6899999999999966666788888 899999999999988889999999999999


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +++|+++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.........+..+++|++|++++|.+
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            9999998 5565554  789999999999998777788999999999999999865222222337889999999999988


Q ss_pred             cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396          202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI  281 (456)
Q Consensus       202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  281 (456)
                      + .+|...                                                      +++|++|++++|.+++..
T Consensus       184 ~-~l~~~~------------------------------------------------------~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          184 T-TIPQGL------------------------------------------------------PPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             C-SCCSSC------------------------------------------------------CTTCSEEECTTSCCCEEC
T ss_pred             c-cCCccc------------------------------------------------------cccCCEEECCCCcCCccC
Confidence            7 455320                                                      245999999999999988


Q ss_pred             chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC----
Q 038396          282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK----  357 (456)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~----  357 (456)
                      +..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+...    
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence            999999999999999999999888889999999999999999999 788889999999999999999996554321    


Q ss_pred             ---CCCCCCCcccCCCCCCC
Q 038396          358 ---QFATFDNTSFDGNSGLC  374 (456)
Q Consensus       358 ---~~~~l~~~~~~~n~~lc  374 (456)
                         ....+..+++.+||..+
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCG
T ss_pred             cccccccccceEeecCcccc
Confidence               23556777889998765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-31  Score=264.49  Aligned_cols=322  Identities=23%  Similarity=0.268  Sum_probs=246.7

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      +++|++|++++|.+++...+     ..+++|++|++++|.+++..+  +.++++|++|++++|.+++. +. +..++ +|
T Consensus        45 l~~l~~L~l~~~~i~~l~~~-----~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~-~L  114 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLT-NL  114 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCT-TC
T ss_pred             hccccEEecCCCCCccCcch-----hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCC-CC
Confidence            67899999999998732211     228899999999999996554  99999999999999999854 44 88888 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      ++|++++|.+++..+  +..+++|++|++++|++++ ++ .+..+++|++|+++ |.+.+..  .++.+++|++|++++|
T Consensus       115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            999999999996543  8999999999999999985 44 58999999999997 4555332  4889999999999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS  253 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (456)
                      .+.+..  .  +..+++|++|++++|.+++..+   +..+++|+.++++++.+....  .+.    .........+....
T Consensus       188 ~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~l~----~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          188 KVSDIS--V--LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLA----SLTNLTDLDLANNQ  254 (466)
T ss_dssp             CCCCCG--G--GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGG----GCTTCSEEECCSSC
T ss_pred             cCCCCh--h--hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch--hhh----cCCCCCEEECCCCc
Confidence            988763  2  3788999999999999985444   677899999999988763210  010    01111111111111


Q ss_pred             cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396          254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL  333 (456)
Q Consensus       254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l  333 (456)
                      ...... ...+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..|  +
T Consensus       255 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~  327 (466)
T 1o6v_A          255 ISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V  327 (466)
T ss_dssp             CCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred             cccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence            111111 2346779999999999988544  7888999999999999986544  7889999999999999986655  7


Q ss_pred             hcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCC
Q 038396          334 VEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGL  373 (456)
Q Consensus       334 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l  373 (456)
                      ..+++|+.|++++|++++. +....++.++.+++.+|...
T Consensus       328 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred             ccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence            7899999999999999875 44456777888888888653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-31  Score=260.25  Aligned_cols=302  Identities=13%  Similarity=0.065  Sum_probs=180.3

Q ss_pred             CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396            5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ   84 (456)
Q Consensus         5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   84 (456)
                      .+..+.+  +++|++|++++|.+++...+     ..+++|++|++++|.+++. |  +..+++|++|++++|.+++ ++ 
T Consensus        34 ~~~~~~~--l~~L~~L~Ls~n~l~~~~~l-----~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~-  101 (457)
T 3bz5_A           34 DTISEEQ--LATLTSLDCHNSSITDMTGI-----EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD-  101 (457)
T ss_dssp             SEEEHHH--HTTCCEEECCSSCCCCCTTG-----GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC-
T ss_pred             cccChhH--cCCCCEEEccCCCcccChhh-----cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee-
Confidence            3445666  77788888888777622111     1266777777777777753 3  6677777777777777774 33 


Q ss_pred             hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396           85 CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN  164 (456)
Q Consensus        85 ~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  164 (456)
                       +..++ +|++|++++|.+++. +  +..+++|++|++++|++++. +  +..+++|++|++++|...+.+  .++.+++
T Consensus       102 -~~~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 -VTPLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             -CTTCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             -cCCCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCc
Confidence             56666 677777777777753 3  66777777777777777753 2  566666677777666433333  3556666


Q ss_pred             CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccc
Q 038396          165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST  244 (456)
Q Consensus       165 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~  244 (456)
                      |++|++++|++++++   +  ..+++|+.|++++|.+++ ++   +..+++|+.+++++|.+....   +...    ...
T Consensus       172 L~~L~ls~n~l~~l~---l--~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l----~~L  235 (457)
T 3bz5_A          172 LTTLDCSFNKITELD---V--SQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID---VTPL----TQL  235 (457)
T ss_dssp             CCEEECCSSCCCCCC---C--TTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTC----TTC
T ss_pred             CCEEECCCCccceec---c--ccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC---cccc----CCC
Confidence            666666666666542   2  455666666666666653 22   455566666666655442210   1000    000


Q ss_pred             ccceeEeeccCcccccccccc----------cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCc-------
Q 038396          245 YDYSLIMNSKGRMMTYNKIPD----------ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-------  307 (456)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~----------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-------  307 (456)
                      ..  +....+.........++          .|+.|++++|.+.+..|  +..+++|+.|++++|...+.+|.       
T Consensus       236 ~~--L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~  311 (457)
T 3bz5_A          236 TY--FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE  311 (457)
T ss_dssp             SE--EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred             CE--EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence            00  00000000000001112          34555555555554444  45678888888888876555443       


Q ss_pred             -cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396          308 -CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       308 -~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                       .+..+++|++|++++|++++. +  +..+++|+.|++++|++++
T Consensus       312 L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          312 LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence             255667888888888888863 3  7788889999999998886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=100.00  E-value=2.3e-31  Score=248.22  Aligned_cols=251  Identities=24%  Similarity=0.305  Sum_probs=177.9

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccc--cChhhhhCCCCC
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV--LPQCLGNFSDEL   93 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~L   93 (456)
                      -+.++++++.++       .+|.. .+++++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+. +|
T Consensus         9 ~~~l~c~~~~l~-------~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L   80 (306)
T 2z66_A            9 GTEIRCNSKGLT-------SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SL   80 (306)
T ss_dssp             TTEEECCSSCCS-------SCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CC
T ss_pred             CCEEEcCCCCcc-------cCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-cc
Confidence            467888888887       45544 56889999999999866556688899999999999988732  356677777 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCC-ccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS  172 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  172 (456)
                      ++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            99999999888 456668888888888888888885544 5678888888888888888777777777778888888888


Q ss_pred             Ccccc-cCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396          173 NKFYG-IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM  251 (456)
Q Consensus       173 n~l~~-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (456)
                      |.+.+ ..+..+  ..+++|++|++++|.++                                                 
T Consensus       160 n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~-------------------------------------------------  188 (306)
T 2z66_A          160 NSFQENFLPDIF--TELRNLTFLDLSQCQLE-------------------------------------------------  188 (306)
T ss_dssp             CEEGGGEECSCC--TTCTTCCEEECTTSCCC-------------------------------------------------
T ss_pred             CccccccchhHH--hhCcCCCEEECCCCCcC-------------------------------------------------
Confidence            87765 333333  44555555555555554                                                 


Q ss_pred             eccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCch
Q 038396          252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ  331 (456)
Q Consensus       252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  331 (456)
                                                 +..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus       189 ---------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          189 ---------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             ---------------------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             ---------------------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence                                       44445555666666666666666655555566666666666666666666666


Q ss_pred             hhhcCC-CCCEEeccCCcCcccCC
Q 038396          332 QLVEFT-FLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       332 ~l~~l~-~L~~L~ls~N~l~~~~p  354 (456)
                      .+..++ +|++|++++|+++|.++
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEECSGG
T ss_pred             HHHhhhccCCEEEccCCCeecccC
Confidence            666653 66677777776666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.98  E-value=8.1e-31  Score=257.89  Aligned_cols=253  Identities=21%  Similarity=0.213  Sum_probs=202.5

Q ss_pred             CCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396           43 ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL  122 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  122 (456)
                      ....++.++..++ .+|..+.  +++++|+|++|.+++..+..|..++ +|++|++++|.+++..+..|.++++|++|++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3467777777777 4555443  5788888888888877777777777 7888888888888777788888888888888


Q ss_pred             cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC-CcccccCCCCCCccCCCCccEEecccccC
Q 038396          123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS-NKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      ++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++ |.+..+.+..+  ..+++|++|++++|.+
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCTTCCEEECTTSCC
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--cCCCCCCEEECCCCcc
Confidence            88888866666788888888888888888866666788888888888887 45555544444  6788888888888888


Q ss_pred             cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396          202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI  281 (456)
Q Consensus       202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  281 (456)
                      + .+|.  +.                                                   .+++|++|+|++|.+++..
T Consensus       209 ~-~~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          209 K-DMPN--LT---------------------------------------------------PLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             S-SCCC--CT---------------------------------------------------TCTTCCEEECTTSCCSEEC
T ss_pred             c-cccc--cc---------------------------------------------------ccccccEEECcCCcCcccC
Confidence            7 3431  10                                                   0345889999999999988


Q ss_pred             chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396          282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      |..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus       235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999999999999999999988899999999999999999999977777888999999999999999887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.98  E-value=1.3e-30  Score=255.45  Aligned_cols=190  Identities=26%  Similarity=0.363  Sum_probs=142.9

Q ss_pred             ccCCChhhhhhcCCC-------------CCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCC
Q 038396            2 HGKIPKWLLDPSMQY-------------LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTV   68 (456)
Q Consensus         2 ~g~ip~~~~~~~l~~-------------L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L   68 (456)
                      +|.+|+.+.+  +.+             +++|++++|+++       .+|..+++|+.|++++|.+++ +|..   +++|
T Consensus        47 ~~~~p~~~~~--l~~L~~l~l~~c~~~~l~~L~l~~~~l~-------~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L  113 (454)
T 1jl5_A           47 ERNAPPGNGE--QREMAVSRLRDCLDRQAHELELNNLGLS-------SLPELPPHLESLVASCNSLTE-LPEL---PQSL  113 (454)
T ss_dssp             HHTSCTTSCC--CHHHHHHHHHHHHHHTCSEEECTTSCCS-------CCCSCCTTCSEEECCSSCCSS-CCCC---CTTC
T ss_pred             cccCCccccc--chhcchhhhhhhhccCCCEEEecCCccc-------cCCCCcCCCCEEEccCCcCCc-cccc---cCCC
Confidence            4566766665  554             477888877776       455556789999999999886 5543   4788


Q ss_pred             CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396           69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  148 (456)
Q Consensus        69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  148 (456)
                      ++|++++|.+++ +|.    .+++|++|++++|.+++ +| .|..+++|++|++++|++++ +|..+   .+|++|++++
T Consensus       114 ~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~  182 (454)
T 1jl5_A          114 KSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGN  182 (454)
T ss_dssp             CEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCS
T ss_pred             cEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcC
Confidence            889999988873 443    22378999999999885 66 58888999999999998884 55433   5889999999


Q ss_pred             CcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          149 NQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      |.+++ +| .++.+++|++|++++|++++++..      .++|++|++++|.++ .+|.  +..+++|+.++++++.+
T Consensus       183 n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          183 NQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCC
T ss_pred             CcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcC
Confidence            98885 45 588888999999999888875321      257888888888887 7773  77888888888887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.98  E-value=7.7e-31  Score=257.15  Aligned_cols=252  Identities=21%  Similarity=0.219  Sum_probs=178.7

Q ss_pred             CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396           44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS  123 (456)
Q Consensus        44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  123 (456)
                      ...++.+++.++ .+|..+.  ++++.|+|++|.+++..+..|..+. +|++|+|++|.++++.+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            445666666665 4444333  4566666666666655555666665 66666666666666655666666666666666


Q ss_pred             CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC-CcccccCCCCCCccCCCCccEEecccccCc
Q 038396          124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS-NKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      +|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++ +.+..+.+..+  ..+++|++|++++|.++
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCSSCCEEECTTSCCS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--hcccccCeecCCCCcCc
Confidence            6666655555566666666666666666655555666666666666666 33333333333  55666777777766665


Q ss_pred             CCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCc
Q 038396          203 GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIP  282 (456)
Q Consensus       203 ~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  282 (456)
                       .+|.  +                                                   ..+++|++|+|++|.+++..+
T Consensus       199 -~~~~--~---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~  224 (440)
T 3zyj_A          199 -EIPN--L---------------------------------------------------TPLIKLDELDLSGNHLSAIRP  224 (440)
T ss_dssp             -SCCC--C---------------------------------------------------TTCSSCCEEECTTSCCCEECT
T ss_pred             -cccc--c---------------------------------------------------CCCcccCEEECCCCccCccCh
Confidence             3331  0                                                   014558999999999999888


Q ss_pred             hhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396          283 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       283 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      ..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus       225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            9999999999999999999988899999999999999999999977778888999999999999999987764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2e-30  Score=254.33  Aligned_cols=313  Identities=16%  Similarity=0.143  Sum_probs=228.1

Q ss_pred             CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396            5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ   84 (456)
Q Consensus         5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   84 (456)
                      +| .+..  +++|++|+|++|+++..     . ...+++|++|++++|.+++. +  +.++++|++|++++|.+++ +| 
T Consensus        57 ~~-~l~~--l~~L~~L~Ls~n~l~~~-----~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~-  122 (457)
T 3bz5_A           57 MT-GIEK--LTGLTKLICTSNNITTL-----D-LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD-  122 (457)
T ss_dssp             CT-TGGG--CTTCSEEECCSSCCSCC-----C-CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC-
T ss_pred             Ch-hhcc--cCCCCEEEccCCcCCeE-----c-cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec-
Confidence            45 6888  99999999999999832     1 23388999999999999964 3  8899999999999999985 44 


Q ss_pred             hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396           85 CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN  164 (456)
Q Consensus        85 ~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  164 (456)
                       +..++ +|++|++++|.+++. +  +..+++|++|++++|+..+.+  .+..+++|++|++++|.+++ +|  ++.+++
T Consensus       123 -~~~l~-~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~  192 (457)
T 3bz5_A          123 -VSQNP-LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL  192 (457)
T ss_dssp             -CTTCT-TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred             -CCCCC-cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence             77787 899999999999964 3  788899999999999655454  47888999999999999986 34  788899


Q ss_pred             CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccc
Q 038396          165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST  244 (456)
Q Consensus       165 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~  244 (456)
                      |+.|++++|++++.   .+  ..+++|++|++++|++++ +|   +..+++|+.+++++|.+.......+..........
T Consensus       193 L~~L~l~~N~l~~~---~l--~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          193 LNRLNCDTNNITKL---DL--NQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             CCEEECCSSCCSCC---CC--TTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred             CCEEECcCCcCCee---cc--ccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence            99999999998876   23  678899999999999984 66   67788888888888776433222121111000000


Q ss_pred             -ccceeEeeccCccccc-ccccccccEEEccCCCCCccCch--------hhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396          245 -YDYSLIMNSKGRMMTY-NKIPDILTGIILSSNRFDRVIPT--------SIANLKGLQVLNLDNNNLQGHIPSCLGNLTN  314 (456)
Q Consensus       245 -~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  314 (456)
                       ....+..........+ ...++.|+.|++++|...+.+|.        .+..+++|+.|++++|++++. +  +..+++
T Consensus       264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~  340 (457)
T 3bz5_A          264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTK  340 (457)
T ss_dssp             CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred             CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCc
Confidence             0000001111000001 12357899999999987665443        256678999999999999974 3  899999


Q ss_pred             CCeeeCCCCcccccCchhhhc-------------CCCCCEEeccCCcCcccCCC
Q 038396          315 LESLDLSNNRFSGQIPQQLVE-------------FTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       315 L~~L~Ls~N~l~~~~~~~l~~-------------l~~L~~L~ls~N~l~~~~p~  355 (456)
                      |+.|++++|++++ ++ .+..             +..|..+++++|+++|.+|.
T Consensus       341 L~~L~l~~N~l~~-l~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          341 LKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CSEEECCSSCCCB-CT-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCT
T ss_pred             CcEEECCCCCCCC-cc-ccccccccCCcEEecceeeecCccccccCcEEEEcCh
Confidence            9999999999986 22 1221             23466677777777777773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=3.4e-30  Score=252.47  Aligned_cols=265  Identities=22%  Similarity=0.301  Sum_probs=114.6

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      ++|++|++++|++++ +| .|.++++|++|++++|+++ .+|..+   . +|++|++++|.+++ +| .+..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---P-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---c-cccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            445555555555553 33 3555555555555555554 233221   1 45555555555553 33 345555555555


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +++|++++ +|...   ++|++|++++|.++ .+| .++.+++|++|++++|++++++.      .+++|++|++++|.+
T Consensus       202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l  269 (454)
T 1jl5_A          202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYL  269 (454)
T ss_dssp             CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCC
T ss_pred             CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcc
Confidence            55555553 22211   34555555555554 334 25555555555555555554321      124555555555555


Q ss_pred             cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396          202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI  281 (456)
Q Consensus       202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  281 (456)
                      + .+|..    .++|+.+++++|.+....     ..+.   ...  ...... .....+...+++|++|++++|++++ +
T Consensus       270 ~-~l~~~----~~~L~~L~ls~N~l~~l~-----~~~~---~L~--~L~l~~-N~l~~i~~~~~~L~~L~Ls~N~l~~-l  332 (454)
T 1jl5_A          270 T-DLPEL----PQSLTFLDVSENIFSGLS-----ELPP---NLY--YLNASS-NEIRSLCDLPPSLEELNVSNNKLIE-L  332 (454)
T ss_dssp             S-CCCCC----CTTCCEEECCSSCCSEES-----CCCT---TCC--EEECCS-SCCSEECCCCTTCCEEECCSSCCSC-C
T ss_pred             c-ccCcc----cCcCCEEECcCCccCccc-----CcCC---cCC--EEECcC-CcCCcccCCcCcCCEEECCCCcccc-c
Confidence            5 23321    244555555554432100     0000   000  000000 0011112223456666666666655 2


Q ss_pred             chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccc--cCchhhhcC-------------CCCCEEeccC
Q 038396          282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG--QIPQQLVEF-------------TFLEFFDVSD  346 (456)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~l-------------~~L~~L~ls~  346 (456)
                      |..   +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+             ++|+.|++++
T Consensus       333 p~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~  405 (454)
T 1jl5_A          333 PAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET  405 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred             ccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence            322   355666666666665 3443   34566666666666665  455555544             5566666666


Q ss_pred             CcCcc
Q 038396          347 NYLTG  351 (456)
Q Consensus       347 N~l~~  351 (456)
                      |++++
T Consensus       406 N~l~~  410 (454)
T 1jl5_A          406 NPLRE  410 (454)
T ss_dssp             -----
T ss_pred             CcCCc
Confidence            66655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=9.5e-31  Score=257.40  Aligned_cols=253  Identities=20%  Similarity=0.188  Sum_probs=220.2

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      ..+.++.++..++ .+|..+.   +++++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            4578999999998 7787553   38999999999999988999999999999999999999888899999999999999


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.++...+..|..+++|++|++++|++..+.+..+  ..+++|++|++++|...+.++...|..              
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------  194 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG--------------  194 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------------
Confidence            9999998777789999999999999999998876666  789999999999855443555433332              


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP  306 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (456)
                                                           +++|++|++++|.+++. | .+..+++|+.|+|++|++++..|
T Consensus       195 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          195 -------------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECG
T ss_pred             -------------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCc
Confidence                                                 34588899999999875 3 58889999999999999999999


Q ss_pred             ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396          307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      ..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..++.++.+++.+||+.|+|.+
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999999999999999999888999999999999999999999665543 4577888999999999999964

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=256.21  Aligned_cols=253  Identities=18%  Similarity=0.200  Sum_probs=220.6

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      ..+.++.+++.++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4678999999998 7887654   38999999999999888899999999999999999999888889999999999999


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.++...+..|..+++|++|++++|++..+.+..+  ..+++|++|++++|...+.++...|..              
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------  183 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG--------------  183 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc--------------
Confidence            9999997777789999999999999999998876666  789999999999865443555433333              


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP  306 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (456)
                                                           +++|++|++++|.++.. | .+..+++|+.|+|++|++++..|
T Consensus       184 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~  224 (440)
T 3zyj_A          184 -------------------------------------LSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRP  224 (440)
T ss_dssp             -------------------------------------CSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECT
T ss_pred             -------------------------------------ccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccCh
Confidence                                                 34588899999999874 4 48889999999999999999989


Q ss_pred             ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396          307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      ..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..++.++.+++.+||+.|+|.+
T Consensus       225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99999999999999999999888999999999999999999999766543 4578889999999999999854

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1.8e-31  Score=246.20  Aligned_cols=249  Identities=20%  Similarity=0.223  Sum_probs=153.8

Q ss_pred             CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396           69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  148 (456)
Q Consensus        69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  148 (456)
                      ++++++++.++ .+|..+   +++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            34555555555 444432   12566666666666655555556666666666666666655555566666666666666


Q ss_pred             Cc-CCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccc
Q 038396          149 NQ-ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL  227 (456)
Q Consensus       149 n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~  227 (456)
                      |. ++...+..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.++ .++...+..               
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~---------------  151 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD---------------  151 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT---------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHhcc---------------
Confidence            65 554445556666666666666666655544444  55566666666666665 333222221               


Q ss_pred             ccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCc
Q 038396          228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS  307 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (456)
                                                          +++|++|++++|.+++..+..+..+++|+.|++++|++++..|.
T Consensus       152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence                                                23366666666666666666677788888888888888877788


Q ss_pred             cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCC
Q 038396          308 CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCG  375 (456)
Q Consensus       308 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~  375 (456)
                      .|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.++..+.+.+++......+...|.
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence            88888888888888888886666667888888888888888887766543333333333344444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1e-30  Score=241.17  Aligned_cols=252  Identities=21%  Similarity=0.258  Sum_probs=143.0

Q ss_pred             CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE
Q 038396           18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL   96 (456)
Q Consensus        18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L   96 (456)
                      ++++.+++.++       .+|.. .++++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..++ +|++|
T Consensus        14 ~~~~c~~~~l~-------~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQ-------AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQL   85 (285)
T ss_dssp             CEEECCSSCCS-------SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEE
T ss_pred             eEEEcCcCCcc-------cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEE
Confidence            45566665554       33332 34555666666655554445555555555555555555544455555554 55555


Q ss_pred             EccCCc-cceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           97 DLQGNN-FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        97 ~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      ++++|. ++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            555554 4444445555555555555555555544444555555555555555555544444444455555555555544


Q ss_pred             cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396          176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG  255 (456)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (456)
                      +++.+..+  ..+++                                                                 
T Consensus       166 ~~~~~~~~--~~l~~-----------------------------------------------------------------  178 (285)
T 1ozn_A          166 SSVPERAF--RGLHS-----------------------------------------------------------------  178 (285)
T ss_dssp             CEECTTTT--TTCTT-----------------------------------------------------------------
T ss_pred             cccCHHHh--cCccc-----------------------------------------------------------------
Confidence            44332222  23333                                                                 


Q ss_pred             cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhc
Q 038396          256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE  335 (456)
Q Consensus       256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~  335 (456)
                                 |++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+....+.. .-
T Consensus       179 -----------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~  246 (285)
T 1ozn_A          179 -----------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL  246 (285)
T ss_dssp             -----------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred             -----------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence                       555555666666656667777788888888888888666666788888888888888876433311 11


Q ss_pred             CCCCCEEeccCCcCcccCCCC
Q 038396          336 FTFLEFFDVSDNYLTGAIPLG  356 (456)
Q Consensus       336 l~~L~~L~ls~N~l~~~~p~~  356 (456)
                      ...++.+..+.+.+.|..|..
T Consensus       247 ~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          247 WAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHHHHHCCSEECCCBEEESGG
T ss_pred             HHHHHhcccccCccccCCchH
Confidence            122444557778888887753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=7.1e-31  Score=249.90  Aligned_cols=278  Identities=21%  Similarity=0.238  Sum_probs=215.9

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      ++.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            455566888888888 5565444  4788888888888865555788887 88888888888888778888888888888


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCC-cccccCCCCCCccCCCCccEEeccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSN-KFYGIIKEPRTDCRFSKLHIIDLSN  198 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~  198 (456)
                      ++++|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++| .+....+..+  ..+++|++|++++
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~  183 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDA  183 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEE
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCC
Confidence            888888886555558888888888888888885443 46788888888888888 4666655555  6788888888888


Q ss_pred             ccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC
Q 038396          199 NRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD  278 (456)
Q Consensus       199 n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  278 (456)
                      |.+++..|. .+..                                                   +++|++|++++|.++
T Consensus       184 n~l~~~~~~-~l~~---------------------------------------------------l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          184 SDLQSYEPK-SLKS---------------------------------------------------IQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCEECTT-TTTT---------------------------------------------------CSEEEEEEEECSCST
T ss_pred             CCcCccCHH-HHhc---------------------------------------------------cccCCeecCCCCccc
Confidence            888743332 1222                                                   345889999999998


Q ss_pred             ccCchhhhccCCCCeEeCCCccccccCCcccc---CCCCCCeeeCCCCcccc----cCchhhhcCCCCCEEeccCCcCcc
Q 038396          279 RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG---NLTNLESLDLSNNRFSG----QIPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       279 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                      ......+..+++|+.|++++|++++..+..+.   ..+.++.++++++.+++    .+|..+..+++|+.|++++|+++ 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            76555667799999999999999976655443   45678889999988875    46788899999999999999999 


Q ss_pred             cCCCC--CCCCCCCCcccCCCCCCCCCC
Q 038396          352 AIPLG--KQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       352 ~~p~~--~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      .+|..  ..++.++.+++.+|++.|+++
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            45543  568889999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=7.9e-30  Score=237.80  Aligned_cols=265  Identities=21%  Similarity=0.216  Sum_probs=203.6

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccc--cchhhhcCCCCCeeecccCcCccc
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGE--IPSWICNLNTVKNLVLSHNNLSGV   81 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~   81 (456)
                      .+|..+    .++|++|+|++|+++   .+.......+++|+.|++++|.++..  .+..+..+++|++|++++|.++ .
T Consensus        21 ~ip~~~----~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~   92 (306)
T 2z66_A           21 SVPTGI----PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T   92 (306)
T ss_dssp             SCCSCC----CTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-E
T ss_pred             cCCCCC----CCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-c
Confidence            456544    458999999999997   23333334488999999999999843  3678888999999999999998 6


Q ss_pred             cChhhhhCCCCCcEEEccCCccceeCC-ccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc-CCCccc
Q 038396           82 LPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD-TFPSWL  159 (456)
Q Consensus        82 ~~~~~~~l~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~  159 (456)
                      +|..+..++ +|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++ ..|..+
T Consensus        93 l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           93 MSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            777788888 89999999999996655 678999999999999999998888999999999999999999986 578899


Q ss_pred             cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccc
Q 038396          160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST  239 (456)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~  239 (456)
                      ..+++|++|++++|++++..+..+  ..+++|++|++++|.++ .+                                  
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~----------------------------------  214 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFF-SL----------------------------------  214 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCS-BC----------------------------------
T ss_pred             hhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccC-cc----------------------------------
Confidence            999999999999999998866665  66777788877777776 22                                  


Q ss_pred             cccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCC-CCCee
Q 038396          240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT-NLESL  318 (456)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L  318 (456)
                                                               .+..+..+++|+.|++++|++++..|..+..++ +|++|
T Consensus       215 -----------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          215 -----------------------------------------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  253 (306)
T ss_dssp             -----------------------------------------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred             -----------------------------------------ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence                                                     223445566677777777777666666666663 67777


Q ss_pred             eCCCCcccccCc--hhhhcCCCCCEEeccCCcCcccCCC
Q 038396          319 DLSNNRFSGQIP--QQLVEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       319 ~Ls~N~l~~~~~--~~l~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      +|++|.++...+  .....+...+.+.+..+.+.|..|.
T Consensus       254 ~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             ECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             EccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            777777664321  1122233444555666677766664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.6e-29  Score=237.53  Aligned_cols=226  Identities=19%  Similarity=0.208  Sum_probs=165.0

Q ss_pred             CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEE
Q 038396           65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  144 (456)
Q Consensus        65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  144 (456)
                      .+.+++|++++|.++ .+|..++.+. +|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            356677777777776 6666666666 6777777777776 56666677777777777777776 556667777777777


Q ss_pred             eCcCCcCCcCCCcccc---------CCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccc
Q 038396          145 DLGNNQISDTFPSWLG---------TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDA  215 (456)
Q Consensus       145 ~Ls~n~i~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~  215 (456)
                      ++++|.+.+.+|..+.         .+++|++|++++|+++.+ +..+  ..+++|++|++++|.++ .+|.. +..   
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l--~~l~~L~~L~L~~N~l~-~l~~~-l~~---  227 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASI--ANLQNLKSLKIRNSPLS-ALGPA-IHH---  227 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGG--GGCTTCCEEEEESSCCC-CCCGG-GGG---
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhh--cCCCCCCEEEccCCCCC-cCchh-hcc---
Confidence            7777666666665544         377777777777777633 2223  66777777777777776 34432 211   


Q ss_pred             cccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEe
Q 038396          216 MKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLN  295 (456)
Q Consensus       216 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  295 (456)
                                                                      +++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus       228 ------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          228 ------------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             ------------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             ------------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence                                                            34478888888888887888888889999999


Q ss_pred             CCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396          296 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       296 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~  350 (456)
                      |++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9998888888888888999999999998888889999999999999988877664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.7e-31  Score=248.16  Aligned_cols=248  Identities=21%  Similarity=0.230  Sum_probs=180.2

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCc-cccChhhh-------hCCCCCcEEEccCCccceeCCccc-
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS-GVLPQCLG-------NFSDELSVLDLQGNNFFGTIPDTF-  111 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~~L~~L~Ls~n~i~~~~~~~~-  111 (456)
                      .++|+.+++++|.+  .+|..+...  |++|++++|.++ ..+|..+.       .+. +|++|++++|.+++..|..+ 
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHH
Confidence            34567777777777  556655544  778888888874 34555554       566 78888888888887777765 


Q ss_pred             -cCCCCccEEeccCCcCcccCCccccCC-----CCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccC--CCCC
Q 038396          112 -IKESRLGVIDLSHNLFQGRIPRSLVNC-----SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII--KEPR  183 (456)
Q Consensus       112 -~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~  183 (456)
                       ..+++|++|++++|++++. |..+..+     ++|++|++++|.+++..+..++.+++|++|++++|++.+..  +...
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             7788888888888888765 6666665     78888888888888777777888888888888888765431  1112


Q ss_pred             CccCCCCccEEecccccCcCCCCh---hhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccc
Q 038396          184 TDCRFSKLHIIDLSNNRFTGKLPS---KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY  260 (456)
Q Consensus       184 ~~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (456)
                      .+..+++|++|++++|.++ .++.   ..+..                                                
T Consensus       196 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~------------------------------------------------  226 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGME-TPSGVCSALAAA------------------------------------------------  226 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCC-CHHHHHHHHHHT------------------------------------------------
T ss_pred             HhccCCCCCEEECCCCcCc-chHHHHHHHHhc------------------------------------------------
Confidence            2256778888888888776 2221   11111                                                


Q ss_pred             ccccccccEEEccCCCCCccCc-hhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCC
Q 038396          261 NKIPDILTGIILSSNRFDRVIP-TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL  339 (456)
Q Consensus       261 ~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  339 (456)
                         +++|++|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|
T Consensus       227 ---l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          227 ---RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             ---TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             ---CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence               3458888899998888664 45666789999999999998 7777666  7899999999999855 65 8888999


Q ss_pred             CEEeccCCcCcc
Q 038396          340 EFFDVSDNYLTG  351 (456)
Q Consensus       340 ~~L~ls~N~l~~  351 (456)
                      ++|++++|++++
T Consensus       299 ~~L~L~~N~l~~  310 (312)
T 1wwl_A          299 GNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECTTCTTTC
T ss_pred             CEEeccCCCCCC
Confidence            999999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.9e-29  Score=235.73  Aligned_cols=226  Identities=19%  Similarity=0.268  Sum_probs=185.4

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            367788888888887 66777777888888888888888 7787788887 7888888888888 667778888888888


Q ss_pred             eccCCcCcccCCccccC---------CCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCc
Q 038396          121 DLSHNLFQGRIPRSLVN---------CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL  191 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~---------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  191 (456)
                      ++++|++.+.+|..+..         +++|++|++++|.++ .+|..++.+++|++|++++|+++++++ .  +..+++|
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~-~--l~~l~~L  231 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-A--IHHLPKL  231 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG-G--GGGCTTC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch-h--hccCCCC
Confidence            88887777777776654         889999999999988 778888889999999999999887643 2  3778899


Q ss_pred             cEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEE
Q 038396          192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII  271 (456)
Q Consensus       192 ~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  271 (456)
                      ++|++++|.+.+.+|.. +..                                                   +++|++|+
T Consensus       232 ~~L~Ls~n~~~~~~p~~-~~~---------------------------------------------------l~~L~~L~  259 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPI-FGG---------------------------------------------------RAPLKRLI  259 (328)
T ss_dssp             CEEECTTCTTCCBCCCC-TTC---------------------------------------------------CCCCCEEE
T ss_pred             CEEECcCCcchhhhHHH-hcC---------------------------------------------------CCCCCEEE
Confidence            99999998888666632 211                                                   34588889


Q ss_pred             ccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccc
Q 038396          272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS  326 (456)
Q Consensus       272 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  326 (456)
                      +++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9998888889989999999999999999999999999999999999999988765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.2e-30  Score=244.34  Aligned_cols=262  Identities=25%  Similarity=0.233  Sum_probs=128.3

Q ss_pred             EEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCc
Q 038396           47 YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL  126 (456)
Q Consensus        47 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~  126 (456)
                      .+++.+.+.......+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++..+  |..+++|++|++++|+
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            34444444433333344444555555555555544344444444 45555555555543332  4445555555555555


Q ss_pred             CcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396          127 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       127 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  206 (456)
                      +++..     ..++|++|++++|.+++..+.   .+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+
T Consensus        92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           92 VQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             EEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEG
T ss_pred             ccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccH
Confidence            54221     124555555555555433222   23445555555555554433333  444555555555555542222


Q ss_pred             hhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhh
Q 038396          207 SKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA  286 (456)
Q Consensus       207 ~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~  286 (456)
                      ...+..+++|+.+++++|.+....                             ....+++|++|++++|.+++.++ .+.
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~-----------------------------~~~~l~~L~~L~Ls~N~l~~l~~-~~~  211 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVK-----------------------------GQVVFAKLKTLDLSSNKLAFMGP-EFQ  211 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEE-----------------------------CCCCCTTCCEEECCSSCCCEECG-GGG
T ss_pred             HHHhhccCcCCEEECCCCcCcccc-----------------------------cccccccCCEEECCCCcCCcchh-hhc
Confidence            111122222222222222210000                             00013446777777777766433 366


Q ss_pred             ccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccc-ccCchhhhcCCCCCEEeccC-CcCccc
Q 038396          287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS-GQIPQQLVEFTFLEFFDVSD-NYLTGA  352 (456)
Q Consensus       287 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~ls~-N~l~~~  352 (456)
                      .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++ +.+++.
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            6677777777777776 45556666677777777777766 55666666666677666663 334443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=3.8e-28  Score=245.10  Aligned_cols=262  Identities=23%  Similarity=0.293  Sum_probs=215.0

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      .++++|++++|.|+       .+|.. .++|+.|++++|.++ .+|.   .+++|++|+|++|.++ .+|.   .++ +|
T Consensus        40 ~~l~~L~ls~n~L~-------~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~-~L  103 (622)
T 3g06_A           40 NGNAVLNVGESGLT-------TLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPP-GL  103 (622)
T ss_dssp             HCCCEEECCSSCCS-------CCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCT-TC
T ss_pred             CCCcEEEecCCCcC-------ccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCC-CC
Confidence            46999999999997       44443 479999999999999 4555   5789999999999998 6676   455 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      ++|++++|.+++. |.   .+++|++|++++|++++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|
T Consensus       104 ~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N  171 (622)
T 3g06_A          104 LELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNN  171 (622)
T ss_dssp             CEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             CEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCC
Confidence            9999999999954 44   56899999999999994 5543   4899999999999985 443   3578999999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS  253 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (456)
                      .+++++      ..+++|+.|++++|.++ .+|.    ...+|+.+++++|.+..                         
T Consensus       172 ~l~~l~------~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-------------------------  215 (622)
T 3g06_A          172 QLTSLP------MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-------------------------  215 (622)
T ss_dssp             CCSCCC------CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-------------------------
T ss_pred             CCCCCc------ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-------------------------
Confidence            998864      34689999999999998 5664    24677888888765521                         


Q ss_pred             cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396          254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL  333 (456)
Q Consensus       254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l  333 (456)
                            +...+++|+.|++++|.++++ |   ..+++|+.|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..+
T Consensus       216 ------l~~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l  280 (622)
T 3g06_A          216 ------LPALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESL  280 (622)
T ss_dssp             ------CCCCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGG
T ss_pred             ------cCCCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHH
Confidence                  111246799999999999984 4   45689999999999999 5565   6789999999999999 789999


Q ss_pred             hcCCCCCEEeccCCcCcccCCC
Q 038396          334 VEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       334 ~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      ..+++|+.|++++|++++.+|.
T Consensus       281 ~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GGSCTTCEEECCSCCCCHHHHH
T ss_pred             hhccccCEEEecCCCCCCcCHH
Confidence            9999999999999999987764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.7e-31  Score=263.77  Aligned_cols=322  Identities=21%  Similarity=0.144  Sum_probs=184.5

Q ss_pred             ChhhhhhcCCCCCEEEccCCCCCC--CCcCccCCCCCCCCCcEEEccCCcccc----ccchhhhcCCCCCeeecccCcCc
Q 038396            6 PKWLLDPSMQYLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTG----EIPSWICNLNTVKNLVLSHNNLS   79 (456)
Q Consensus         6 p~~~~~~~l~~L~~L~Ls~N~l~~--~~~l~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~   79 (456)
                      |+.+..  +++|++|||++|.+++  ...+...++...++|++|++++|.++.    .++..+..+++|++|++++|.++
T Consensus        49 ~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           49 SSALRV--NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             HHHHHT--CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHHHh--CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            334444  5566666666665541  001111122112256666666666663    34556666666666666666665


Q ss_pred             cccChhhhhC----CCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCcccCCcccc-----CCCCCcEEeC
Q 038396           80 GVLPQCLGNF----SDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQGRIPRSLV-----NCSKLEFLDL  146 (456)
Q Consensus        80 ~~~~~~~~~l----~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L~~L~L  146 (456)
                      +..+..+...    .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++
T Consensus       127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL  206 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence            4433333321    11466666666666642    234445556667777776666543333332     2456677777


Q ss_pred             cCCcCCcC----CCccccCCCCCCEEEccCCcccccCCCCC---CccCCCCccEEecccccCcCC----CChhhhhCccc
Q 038396          147 GNNQISDT----FPSWLGTIPNLNVLILRSNKFYGIIKEPR---TDCRFSKLHIIDLSNNRFTGK----LPSKSFLCLDA  215 (456)
Q Consensus       147 s~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~ls~n~l~~~----~~~~~~~~l~~  215 (456)
                      ++|.+++.    ++..+..+++|++|++++|.+.+.....+   ....+++|++|++++|.+++.    ++ ..+..+++
T Consensus       207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~  285 (461)
T 1z7x_W          207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKES  285 (461)
T ss_dssp             TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTT
T ss_pred             cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCC
Confidence            77766642    34455566677777777776654211000   002356677777777766521    22 22444666


Q ss_pred             cccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCcc----CchhhhccCCC
Q 038396          216 MKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV----IPTSIANLKGL  291 (456)
Q Consensus       216 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L  291 (456)
                      |+.+++++|.+.......+.                      .......+.|++|++++|.+++.    .+..+..+++|
T Consensus       286 L~~L~Ls~n~i~~~~~~~l~----------------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          286 LKELSLAGNELGDEGARLLC----------------------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHH----------------------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cceEECCCCCCchHHHHHHH----------------------HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            66666666544111000000                      00011124688888888888765    34556677888


Q ss_pred             CeEeCCCccccccCCccccC-----CCCCCeeeCCCCcccc----cCchhhhcCCCCCEEeccCCcCccc
Q 038396          292 QVLNLDNNNLQGHIPSCLGN-----LTNLESLDLSNNRFSG----QIPQQLVEFTFLEFFDVSDNYLTGA  352 (456)
Q Consensus       292 ~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~ls~N~l~~~  352 (456)
                      ++|++++|++++..+..+..     .++|++|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            88888888887665554442     6788888888888885    6777788888888888888888753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=1.6e-27  Score=218.67  Aligned_cols=227  Identities=21%  Similarity=0.164  Sum_probs=160.3

Q ss_pred             eecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCc
Q 038396           71 LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ  150 (456)
Q Consensus        71 L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~  150 (456)
                      ++..+..++ .+|..+.   ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            445555555 4554432   257777777777776666667777777777777777776666667777777777777777


Q ss_pred             CCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCC-CChhhhhCccccccccccCcccccc
Q 038396          151 ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK-LPSKSFLCLDAMKIVNTSQLRYLQD  229 (456)
Q Consensus       151 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~l~l~~~~~~~~  229 (456)
                      +++..+..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++. +|. .+..                 
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~-~~~~-----------------  147 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPE-YFSN-----------------  147 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCG-GGGG-----------------
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCch-hhcc-----------------
Confidence            776666667777777777777777766654444  6677777777777777631 231 1211                 


Q ss_pred             ccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCC----eEeCCCccccccC
Q 038396          230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ----VLNLDNNNLQGHI  305 (456)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~  305 (456)
                                                        +++|++|++++|.+++..+..+..+++|+    .|++++|++++..
T Consensus       148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence                                              24477788888888777777777777776    8999999999666


Q ss_pred             CccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC
Q 038396          306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG  356 (456)
Q Consensus       306 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~  356 (456)
                      +..+. ..+|++|++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus       194 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          194 PGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            65554 458999999999999766667889999999999999999988753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=3.6e-29  Score=247.60  Aligned_cols=149  Identities=19%  Similarity=0.102  Sum_probs=76.8

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      ++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..++ +|++|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            355555555555555555555555555555555555554333  44454 55555555555553321     14555555


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+..+. ..+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc
Confidence            555555543332   234555555555555555455555555555555555555544333220 1345555555555554


Q ss_pred             c
Q 038396          202 T  202 (456)
Q Consensus       202 ~  202 (456)
                      +
T Consensus       182 ~  182 (487)
T 3oja_A          182 Y  182 (487)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.7e-29  Score=235.94  Aligned_cols=253  Identities=23%  Similarity=0.247  Sum_probs=206.4

Q ss_pred             hhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccc-eeCCcccc-------CCCCccEEeccCCcCcccCC
Q 038396           61 WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFF-GTIPDTFI-------KESRLGVIDLSHNLFQGRIP  132 (456)
Q Consensus        61 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~  132 (456)
                      .+...++|++|++++|.+  .+|..+..   .|++|++++|.++ ..+|..+.       ++++|++|++++|++++..|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            456678899999999999  67887765   3899999999995 44666554       78999999999999998888


Q ss_pred             ccc--cCCCCCcEEeCcCCcCCcCCCccccCC-----CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCC
Q 038396          133 RSL--VNCSKLEFLDLGNNQISDTFPSWLGTI-----PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL  205 (456)
Q Consensus       133 ~~l--~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~  205 (456)
                      ..+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|++.+..+..+  ..+++|++|++++|++.+.+
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcch
Confidence            876  8999999999999999977 8777776     899999999999998877766  78999999999999976432


Q ss_pred             ChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCcc---Cc
Q 038396          206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV---IP  282 (456)
Q Consensus       206 ~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~  282 (456)
                      +..  ...                                              ....+++|++|++++|.+++.   ..
T Consensus       190 ~~~--~~~----------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          190 GLI--SAL----------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             HHH--HHS----------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             HHH--HHH----------------------------------------------HhccCCCCCEEECCCCcCcchHHHHH
Confidence            110  000                                              001145699999999999842   22


Q ss_pred             hhhhccCCCCeEeCCCccccccCC-ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCC
Q 038396          283 TSIANLKGLQVLNLDNNNLQGHIP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFAT  361 (456)
Q Consensus       283 ~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  361 (456)
                      ..+..+++|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+.  ++|++|++++|++++. |....++.
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~  297 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQ  297 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCE
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCC
Confidence            445678999999999999997775 55677899999999999999 7787765  8999999999999977 66667888


Q ss_pred             CCCcccCCCCCC
Q 038396          362 FDNTSFDGNSGL  373 (456)
Q Consensus       362 l~~~~~~~n~~l  373 (456)
                      ++.+++.+|+..
T Consensus       298 L~~L~L~~N~l~  309 (312)
T 1wwl_A          298 VGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEECTTCTTT
T ss_pred             CCEEeccCCCCC
Confidence            888899999753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=5.2e-29  Score=246.40  Aligned_cols=219  Identities=25%  Similarity=0.216  Sum_probs=175.0

Q ss_pred             CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEE
Q 038396           65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  144 (456)
Q Consensus        65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  144 (456)
                      +++|++|+|++|.+++..|..|..++ +|++|+|++|.+++..|  |..+++|++|++++|.+++..     ..++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            44899999999999977778899988 89999999999997765  889999999999999998543     23899999


Q ss_pred             eCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCc
Q 038396          145 DLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQL  224 (456)
Q Consensus       145 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~  224 (456)
                      ++++|.+++..+.   .+++|+.|++++|.+++..+..+  ..+++|++|++++|.+++..|......            
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------------  167 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------------  167 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh------------
Confidence            9999999866543   46889999999999998876666  778999999999999985444322112            


Q ss_pred             cccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc
Q 038396          225 RYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH  304 (456)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  304 (456)
                                                             ++.|+.|+|++|.+++..+  ...+++|+.|+|++|++++.
T Consensus       168 ---------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          168 ---------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             ---------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred             ---------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence                                                   3447888888888877522  33578888888888888854


Q ss_pred             CCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396          305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       305 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                      . ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.+
T Consensus       207 ~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          207 G-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             C-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             C-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence            4 447788888888888888884 67777788888888888888873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=1e-30  Score=258.15  Aligned_cols=353  Identities=16%  Similarity=0.129  Sum_probs=177.2

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc----ccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG----EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS   90 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   90 (456)
                      ++|++|||++|+++... + ..+...+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+....
T Consensus         3 ~~l~~L~Ls~~~l~~~~-~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDAR-W-AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHH-H-HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchh-H-HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            34666666666654110 0 0001114566666666666653    2344555566666666666666544343333322


Q ss_pred             C----CCcEEEccCCccce----eCCccccCCCCccEEeccCCcCcccCCcccc-----CCCCCcEEeCcCCcCCcCC--
Q 038396           91 D----ELSVLDLQGNNFFG----TIPDTFIKESRLGVIDLSHNLFQGRIPRSLV-----NCSKLEFLDLGNNQISDTF--  155 (456)
Q Consensus        91 ~----~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L~~L~Ls~n~i~~~~--  155 (456)
                      .    +|++|++++|.++.    .++..+..+++|++|++++|++++..+..+.     ..++|++|++++|.+++..  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            1    36666666666653    3355566666666666666666543222221     2345666666666665432  


Q ss_pred             --CccccCCCCCCEEEccCCcccccCCCCCC---ccCCCCccEEecccccCcCCC---ChhhhhCccccccccccCcccc
Q 038396          156 --PSWLGTIPNLNVLILRSNKFYGIIKEPRT---DCRFSKLHIIDLSNNRFTGKL---PSKSFLCLDAMKIVNTSQLRYL  227 (456)
Q Consensus       156 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~---~~~~~~~l~~l~~l~l~~~~~~  227 (456)
                        +..+..+++|++|++++|.+.......+.   ....++|++|++++|.+++.-   -...+..+++|+.++++++.+.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence              33444556666666666665432111110   001345666666666665210   0123444556666666665432


Q ss_pred             ccccCCCCC-ccccccccccceeEeeccCc-------ccccccccccccEEEccCCCCCccCchhhhcc-----CCCCeE
Q 038396          228 QDVISPYGQ-VSTDLISTYDYSLIMNSKGR-------MMTYNKIPDILTGIILSSNRFDRVIPTSIANL-----KGLQVL  294 (456)
Q Consensus       228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L  294 (456)
                      ......+.. .........  .+.......       .......++.|++|++++|.+++..+..+...     ++|++|
T Consensus       241 ~~~~~~l~~~~~~~~~~L~--~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLR--TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCC--EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             hHHHHHHHHHHhcCCCCce--EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            211000000 000000000  000000000       00001114567777777777765444333332     577777


Q ss_pred             eCCCcccccc----CCccccCCCCCCeeeCCCCcccccCchhhhc-----CCCCCEEeccCCcCcc----cCCCC-CCCC
Q 038396          295 NLDNNNLQGH----IPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-----FTFLEFFDVSDNYLTG----AIPLG-KQFA  360 (456)
Q Consensus       295 ~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~ls~N~l~~----~~p~~-~~~~  360 (456)
                      ++++|.+++.    ++..+..+++|++|++++|++++..+..+..     .++|+.|++++|.+++    .+|.. ...+
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            7777777654    3455666777888888888776554444432     5677888888887774    33322 2345


Q ss_pred             CCCCcccCCCC
Q 038396          361 TFDNTSFDGNS  371 (456)
Q Consensus       361 ~l~~~~~~~n~  371 (456)
                      .++.+++.+|+
T Consensus       399 ~L~~L~l~~N~  409 (461)
T 1z7x_W          399 SLRELDLSNNC  409 (461)
T ss_dssp             CCCEEECCSSS
T ss_pred             CccEEECCCCC
Confidence            66666777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.6e-26  Score=231.75  Aligned_cols=255  Identities=29%  Similarity=0.341  Sum_probs=209.5

Q ss_pred             CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396            4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP   83 (456)
Q Consensus         4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   83 (456)
                      .+|..+    .++|++|+|++|.|+       .+|..+++|++|++++|++++ +|.   .+++|++|++++|.++ .+|
T Consensus        54 ~lp~~l----~~~L~~L~L~~N~l~-------~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~  117 (622)
T 3g06_A           54 TLPDCL----PAHITTLVIPDNNLT-------SLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLP  117 (622)
T ss_dssp             CCCSCC----CTTCSEEEECSCCCS-------CCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCC
T ss_pred             ccChhh----CCCCcEEEecCCCCC-------CCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCC
Confidence            566655    368999999999997       566678999999999999994 554   7899999999999998 556


Q ss_pred             hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCC
Q 038396           84 QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP  163 (456)
Q Consensus        84 ~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  163 (456)
                      .   .+. +|++|++++|.++. +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.+++ +|   ..++
T Consensus       118 ~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~  181 (622)
T 3g06_A          118 A---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPS  181 (622)
T ss_dssp             C---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred             C---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCC
Confidence            5   344 89999999999995 5543   4899999999999994 444   35789999999999985 55   5578


Q ss_pred             CCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccc
Q 038396          164 NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIS  243 (456)
Q Consensus       164 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~  243 (456)
                      +|+.|++++|.+++++.      .+++|+.|++++|.++ .+|.    .+++|+.|++++|.+..               
T Consensus       182 ~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~---------------  235 (622)
T 3g06_A          182 GLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS---------------  235 (622)
T ss_dssp             TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC---------------
T ss_pred             CCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc---------------
Confidence            99999999999987643      2478999999999998 6664    34778889988876521               


Q ss_pred             cccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCC
Q 038396          244 TYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN  323 (456)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  323 (456)
                                      +...+++|++|++++|.++.+ |.   .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus       236 ----------------lp~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          236 ----------------LPVLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             ----------------CCCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             ----------------CCCCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence                            112256799999999999974 43   6789999999999999 77899999999999999999


Q ss_pred             cccccCchhhhcCC
Q 038396          324 RFSGQIPQQLVEFT  337 (456)
Q Consensus       324 ~l~~~~~~~l~~l~  337 (456)
                      .+++..|..+..++
T Consensus       295 ~l~~~~~~~l~~L~  308 (622)
T 3g06_A          295 PLSERTLQALREIT  308 (622)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHhcc
Confidence            99998888776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=7.5e-28  Score=225.32  Aligned_cols=241  Identities=21%  Similarity=0.209  Sum_probs=189.8

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      .++..+++.+.+.......+..++ +|++|++++|.+++..|..|..+++|++|++++|++++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            355667888888744444444444 89999999999998888899999999999999999996654  899999999999


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.+++..     ..++|++|++++|++++..+.     .+++|++|++++|.++ .++...+..+++|+.+++++|.+
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCC
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCC
Confidence            999998432     348999999999999987543     3578999999999998 56656678888888888888766


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP  306 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (456)
                      ......                          .+...++.|++|++++|.+++. + ....+++|++|+|++|++++ +|
T Consensus       157 ~~~~~~--------------------------~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~  207 (317)
T 3o53_A          157 DTVNFA--------------------------ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG  207 (317)
T ss_dssp             CEEEGG--------------------------GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred             CcccHH--------------------------HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence            321111                          1111246689999999998875 2 23357889999999999984 44


Q ss_pred             ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396          307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                      ..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence            55888889999999999988 567778888899999999999883

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=4.3e-26  Score=208.35  Aligned_cols=207  Identities=21%  Similarity=0.232  Sum_probs=134.7

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      ..+.++++++.++ .+|..+.   ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3556666666666 4554332   25666666666666555555666666666666666666444444555666666666


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.+++..+..+..+++|++|++++|++++..+..+  ..+++                                    
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~------------------------------------  134 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTK------------------------------------  134 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTT------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcC------------------------------------
Confidence            6666654444445555555555555555554433322  33334                                    


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP  306 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (456)
                                                              |++|++++|.+++..+..+..+++|+.|+|++|++++..+
T Consensus       135 ----------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          135 ----------------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             ----------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ----------------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence                                                    5555555555555555567778888888888888887777


Q ss_pred             ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396          307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      ..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            7788888999999999998866666788889999999999999887763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=2e-26  Score=211.35  Aligned_cols=211  Identities=23%  Similarity=0.219  Sum_probs=120.6

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEEE
Confidence            3466666666666655555566666666666666666544444555555 566666666666555555555555555555


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR  200 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~  200 (456)
                      +++|++++..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|++++.                      
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~----------------------  164 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----------------------  164 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE----------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC----------------------
Confidence            555555544444455555555555555555432 344455555555555555544433                      


Q ss_pred             CcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccccccc-EEEccCCCCCc
Q 038396          201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILT-GIILSSNRFDR  279 (456)
Q Consensus       201 l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~  279 (456)
                           +...+..+..++.                                                +. +|++++|.+++
T Consensus       165 -----~~~~~~~l~~L~~------------------------------------------------l~l~L~ls~n~l~~  191 (276)
T 2z62_A          165 -----YCTDLRVLHQMPL------------------------------------------------LNLSLDLSLNPMNF  191 (276)
T ss_dssp             -----CGGGGHHHHTCTT------------------------------------------------CCEEEECCSSCCCE
T ss_pred             -----CHHHhhhhhhccc------------------------------------------------cceeeecCCCcccc
Confidence                 2222222222111                                                22 56667777766


Q ss_pred             cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396          280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI  329 (456)
Q Consensus       280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  329 (456)
                      ..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|+++...
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            55544433 47888888888888666666778888888888888887543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=5.7e-26  Score=209.35  Aligned_cols=206  Identities=23%  Similarity=0.280  Sum_probs=138.5

Q ss_pred             hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396           62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  141 (456)
Q Consensus        62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  141 (456)
                      +.++++++++++++|.++ .+|..+.   +.+++|++++|.+++..+..|..+++|++|++++|.+++..+  ...+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            456777888888888887 5665543   268888888888877777777788888888888888775433  2667777


Q ss_pred             cEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccc
Q 038396          142 EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT  221 (456)
Q Consensus       142 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l  221 (456)
                      ++|++++|.++ .+|..+..+++|++|++++|+++++.+..+  ..+++|++|++++|.++                   
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~-------------------  137 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK-------------------  137 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCC-------------------
Confidence            88888887776 556666677777777777777766654444  45555566655555554                   


Q ss_pred             cCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccc
Q 038396          222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL  301 (456)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (456)
                                                                               +.++..|..+++|+.|+|++|++
T Consensus       138 ---------------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G          138 ---------------------------------------------------------TLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ---------------------------------------------------------CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ---------------------------------------------------------ccChhhcccccCCCEEECCCCcC
Confidence                                                                     33344455566666666666666


Q ss_pred             cccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccC
Q 038396          302 QGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI  353 (456)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~  353 (456)
                      ++..+..|..+++|++|+|++|+++ .+|..+...++|+.+++++|++.|.+
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            6555555566667777777777766 55666666667777777777776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=3e-25  Score=202.73  Aligned_cols=201  Identities=20%  Similarity=0.308  Sum_probs=178.5

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      .+.+.+++++++++       .+|.. .++++.|++++|++++..+..|.++++|++|++++|.+++..+..+..++ +|
T Consensus        16 ~~~~~l~~~~~~l~-------~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~L   87 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-------AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NL   87 (270)
T ss_dssp             TTTTEEECTTSCCS-------SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT-TC
T ss_pred             CCCCEEEccCCCCC-------ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC-CC
Confidence            35889999999998       45543 56899999999999987778999999999999999999954444567777 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      ++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            99999999999877788899999999999999999888888999999999999999999777777899999999999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      +++++.+..+  ..+++|++|++++|.++ .+|...+..+++|+.+++++|++
T Consensus       168 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          168 QLKRVPEGAF--DKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCSCCCTTTT--TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCcEeChhHh--ccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence            9998876656  78899999999999998 77877888999999999999876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=2e-25  Score=205.68  Aligned_cols=207  Identities=22%  Similarity=0.175  Sum_probs=154.8

Q ss_pred             ccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCC
Q 038396          111 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK  190 (456)
Q Consensus       111 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  190 (456)
                      +..+++++++++++|.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.++++...    ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence            345566666666666666 3444443  4666677777776666566666677777777777776665432    45677


Q ss_pred             ccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEE
Q 038396          191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI  270 (456)
Q Consensus       191 L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  270 (456)
                      |++|++++|.++ .+|.. +..                                                   +++|++|
T Consensus        79 L~~L~Ls~N~l~-~l~~~-~~~---------------------------------------------------l~~L~~L  105 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLL-GQT---------------------------------------------------LPALTVL  105 (290)
T ss_dssp             CCEEECCSSCCS-SCCCC-TTT---------------------------------------------------CTTCCEE
T ss_pred             CCEEECCCCcCC-cCchh-hcc---------------------------------------------------CCCCCEE
Confidence            777777777776 44421 111                                                   3447888


Q ss_pred             EccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396          271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       271 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~  350 (456)
                      ++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|+++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            88888888877788999999999999999999888888899999999999999999666667889999999999999999


Q ss_pred             ccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          351 GAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       351 ~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      ...+.......++.+.+.+||+.|+|.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccChhhcccccCCeEEeCCCCccCcCc
Confidence            544444556678889999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.6e-25  Score=204.65  Aligned_cols=228  Identities=21%  Similarity=0.233  Sum_probs=169.6

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      ++..+++.++.+++....     ..+++++.|++++|.++. + ..+..+++|++|++++|.+++ + ..+..++ +|++
T Consensus        20 ~l~~l~l~~~~~~~~~~~-----~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~   89 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQ-----NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELT-NLTY   89 (272)
T ss_dssp             HHHHHHHTCSCTTSEECH-----HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCT-TCCE
T ss_pred             HHHHHHhcCccccccccc-----ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCC-CCCE
Confidence            355566666665421111     116778888888888873 3 347788888888888888874 3 3677777 7888


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      |++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence            88888888877777788888888888888888877777788888888888888888877777778888888888888888


Q ss_pred             cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396          176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG  255 (456)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (456)
                      ++..+..+  ..+++|++|++++|.+++ ++...+..                                           
T Consensus       170 ~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~~~~~~-------------------------------------------  203 (272)
T 3rfs_A          170 QSLPEGVF--DKLTQLKDLRLYQNQLKS-VPDGVFDR-------------------------------------------  203 (272)
T ss_dssp             CCCCTTTT--TTCTTCCEEECCSSCCSC-CCTTTTTT-------------------------------------------
T ss_pred             CccCHHHh--cCCccCCEEECCCCcCCc-cCHHHHhC-------------------------------------------
Confidence            87766555  678888888888888883 44332332                                           


Q ss_pred             cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396          256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN  314 (456)
Q Consensus       256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  314 (456)
                              +++|++|++++|.+.+.       +++|+.|++..|+++|.+|..++.++.
T Consensus       204 --------l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          204 --------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             --------CTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             --------CcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence                    23477777777776543       456888888888888888888776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.8e-25  Score=204.45  Aligned_cols=222  Identities=18%  Similarity=0.231  Sum_probs=160.2

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      .+..+++..+.+.+..  ....+. +|+.|++++|.++. . ..+..+++|++|++++|++++ + ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~-~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELN-SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHT-TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCccccccc--cccccc-ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence            4445566666665332  234555 67777777777663 2 246667777777777777764 2 35677777777777


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.+++..+..++.+++|++|++++|++++..+..+  ..+++|++|++++|.++ .++...+..              
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~--------------  155 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQ-SLPKGVFDK--------------  155 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------------
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccC-ccCHHHhcc--------------
Confidence            7777776666667777777777777777776655544  66777777777777776 444322222              


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP  306 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (456)
                                                           +++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus       156 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          156 -------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence                                                 2347778888888887777778889999999999999998888


Q ss_pred             ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC
Q 038396          307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG  356 (456)
Q Consensus       307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~  356 (456)
                      ..+..+++|++|++++|.+.+.       ++.|+.+++..|.++|.+|..
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            8889999999999999988754       457889999999999999853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=208.65  Aligned_cols=231  Identities=19%  Similarity=0.193  Sum_probs=174.5

Q ss_pred             CCCCeeecccCcCccccCh---hhhhCCCCCcEEEccCCccceeCCccc--cCCCCccEEeccCCcCcccCC----cccc
Q 038396           66 NTVKNLVLSHNNLSGVLPQ---CLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQGRIP----RSLV  136 (456)
Q Consensus        66 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~  136 (456)
                      ..++.+.+.++.++...-.   .+..+. +|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3567788887776532111   122344 69999999999998888887  889999999999999986544    3455


Q ss_pred             CCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCccccc--CCCCCCccCCCCccEEecccccCcCCCChhhhhCcc
Q 038396          137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI--IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLD  214 (456)
Q Consensus       137 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~  214 (456)
                      .+++|++|++++|.+++..+..++.+++|++|++++|++.+.  .+.......+++|++|++++|.++ .++.....-  
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l--  219 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL--  219 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH--
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH--
Confidence            789999999999999888888899999999999999997652  111222257889999999999886 333210000  


Q ss_pred             ccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhcc---CCC
Q 038396          215 AMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL---KGL  291 (456)
Q Consensus       215 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L  291 (456)
                                                                    ...+++|++|+|++|.+++..|..+..+   ++|
T Consensus       220 ----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L  253 (310)
T 4glp_A          220 ----------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL  253 (310)
T ss_dssp             ----------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred             ----------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence                                                          0013458889999999988767666666   699


Q ss_pred             CeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396          292 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       292 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                      ++|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            99999999999 6677664  7999999999999853 43 6788999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=7.1e-25  Score=196.56  Aligned_cols=196  Identities=18%  Similarity=0.237  Sum_probs=107.6

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCc-CcccCCccccCCCCCcEEeCcC-CcCCcCCCccccCCCCCCEEE
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL-FQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTIPNLNVLI  169 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~  169 (456)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            46666666666665555555566666666666664 5544444556666666666665 566554445555666666666


Q ss_pred             ccCCcccccCCCCCCccCCCCcc---EEecccc-cCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccc
Q 038396          170 LRSNKFYGIIKEPRTDCRFSKLH---IIDLSNN-RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY  245 (456)
Q Consensus       170 L~~n~l~~~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~  245 (456)
                      +++|++++++.  +  ..+++|+   +|++++| .++ .++...|..                                 
T Consensus       112 l~~n~l~~lp~--~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~---------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKMFPD--L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQG---------------------------------  153 (239)
T ss_dssp             EEEECCCSCCC--C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------------------------------
T ss_pred             CCCCCCccccc--c--ccccccccccEEECCCCcchh-hcCcccccc---------------------------------
Confidence            66666555322  2  3444444   5666655 554 333222222                                 


Q ss_pred             cceeEeeccCccccccccccccc-EEEccCCCCCccCchhhhccCCCCeEeCCCcc-ccccCCccccCC-CCCCeeeCCC
Q 038396          246 DYSLIMNSKGRMMTYNKIPDILT-GIILSSNRFDRVIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNL-TNLESLDLSN  322 (456)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~  322 (456)
                                        ++.|+ +|++++|.++.+.+..+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++
T Consensus       154 ------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          154 ------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             ------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                              12244 5555555555433333443 566666666663 665555566666 6666666666


Q ss_pred             CcccccCchhhhcCCCCCEEeccCC
Q 038396          323 NRFSGQIPQQLVEFTFLEFFDVSDN  347 (456)
Q Consensus       323 N~l~~~~~~~l~~l~~L~~L~ls~N  347 (456)
                      |++++ +|..  .+++|+.|+++++
T Consensus       215 N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             Ccccc-CChh--HhccCceeeccCc
Confidence            66663 3332  4556666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.92  E-value=2.4e-26  Score=219.16  Aligned_cols=109  Identities=23%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             CCcEEEccCCccccccc----hhhhcCC-CCCeeecccCcCccccChhhhhC-----CCCCcEEEccCCccceeCCccc-
Q 038396           43 ETILYLVSNNSLTGEIP----SWICNLN-TVKNLVLSHNNLSGVLPQCLGNF-----SDELSVLDLQGNNFFGTIPDTF-  111 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~~L~~L~Ls~n~i~~~~~~~~-  111 (456)
                      +|++|++++|.+++..+    ..|..++ +|++|+|++|.+++..+..+..+     . +|++|++++|.+++..+..+ 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHHHHH
Confidence            35555555555554433    4444444 45555555555544434444332     3 45555555555543333322 


Q ss_pred             ---cCC-CCccEEeccCCcCcccCCcccc----C-CCCCcEEeCcCCcCC
Q 038396          112 ---IKE-SRLGVIDLSHNLFQGRIPRSLV----N-CSKLEFLDLGNNQIS  152 (456)
Q Consensus       112 ---~~l-~~L~~L~Ls~N~l~~~~~~~l~----~-l~~L~~L~Ls~n~i~  152 (456)
                         ..+ ++|++|++++|++++..+..+.    . .++|++|++++|.++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence               222 4455555555554433332221    1 134555555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=2.4e-24  Score=193.05  Aligned_cols=197  Identities=19%  Similarity=0.279  Sum_probs=129.9

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCc-cceeCCccccCCCCccEEeccC-CcCcccCCccccCCCCCcEE
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN-FFGTIPDTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEFL  144 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L  144 (456)
                      +|++|++++|++++..+..+..++ +|++|++++|. ++.+.+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            566666666666644444555555 66666666665 6655555666666666677666 66665555666666677777


Q ss_pred             eCcCCcCCcCCCccccCCCCCC---EEEccCC-cccccCCCCCCccCCCCcc-EEecccccCcCCCChhhhhCccccccc
Q 038396          145 DLGNNQISDTFPSWLGTIPNLN---VLILRSN-KFYGIIKEPRTDCRFSKLH-IIDLSNNRFTGKLPSKSFLCLDAMKIV  219 (456)
Q Consensus       145 ~Ls~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~~~l~~l~~l  219 (456)
                      ++++|.+++ +|. +..+++|+   +|++++| .++++.+..+  ..+++|+ +|++++|.++ .+|...+..       
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~~~~~-------  178 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGYAFNG-------  178 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTTTTTT-------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHhhcCC-------
Confidence            777776664 444 66666666   7777777 6666655444  5667777 7777777776 555332211       


Q ss_pred             cccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCC-CCccCchhhhcc-CCCCeEeCC
Q 038396          220 NTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNR-FDRVIPTSIANL-KGLQVLNLD  297 (456)
Q Consensus       220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~L~  297 (456)
                                                                   .+|++|++++|. +++..+..|..+ ++|+.|+++
T Consensus       179 ---------------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          179 ---------------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             ---------------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             ---------------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence                                                         237777788884 777777778888 889999999


Q ss_pred             CccccccCCccccCCCCCCeeeCCCCc
Q 038396          298 NNNLQGHIPSCLGNLTNLESLDLSNNR  324 (456)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~  324 (456)
                      +|++++ +|..  .+++|+.|+++++.
T Consensus       214 ~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          214 QTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCcccc-CChh--HhccCceeeccCcc
Confidence            999884 4443  56788888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=7.3e-24  Score=191.32  Aligned_cols=180  Identities=21%  Similarity=0.230  Sum_probs=162.7

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      ...++++++++.++       .+|.. .+.++.|++++|.+++..+..|.++++|++|++++|.+++..+..+..+. +|
T Consensus        14 ~~~~~l~~~~~~l~-------~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-------SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-EL   85 (251)
T ss_dssp             GGGTEEECTTCCCS-------SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TC
T ss_pred             CCCeEEecCCCCcc-------ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cC
Confidence            45789999999987       45543 57899999999999988888999999999999999999977777788888 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      ++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            99999999999888888999999999999999999777777899999999999999999877778999999999999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCC
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK  204 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  204 (456)
                      ++++..+..+  ..+++|++|++++|++.+.
T Consensus       166 ~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPHGAF--DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCTTTT--TTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHH--hCCCCCCEEEeeCCceeCC
Confidence            9998877666  7889999999999999854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=3.9e-24  Score=193.10  Aligned_cols=182  Identities=20%  Similarity=0.242  Sum_probs=121.2

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR  171 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  171 (456)
                      ..++++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4566677776666 4444443  466666666666666555566666666666666666665555556666666666666


Q ss_pred             CCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396          172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM  251 (456)
Q Consensus       172 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (456)
                      +|++++..+..+  ..+++|                                                            
T Consensus        92 ~n~l~~~~~~~~--~~l~~L------------------------------------------------------------  109 (251)
T 3m19_A           92 NNQLASLPLGVF--DHLTQL------------------------------------------------------------  109 (251)
T ss_dssp             TSCCCCCCTTTT--TTCTTC------------------------------------------------------------
T ss_pred             CCcccccChhHh--cccCCC------------------------------------------------------------
Confidence            666655443333  344444                                                            


Q ss_pred             eccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCch
Q 038396          252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ  331 (456)
Q Consensus       252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  331 (456)
                                      ++|+|++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+.
T Consensus       110 ----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          110 ----------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             ----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ----------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence                            4455555555554555567778888888888888866666788888888888888888866666


Q ss_pred             hhhcCCCCCEEeccCCcCcccCC
Q 038396          332 QLVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       332 ~l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      .+..+++|+.|++++|++++..+
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCTTST
T ss_pred             HHhCCCCCCEEEeeCCceeCCcc
Confidence            78888888888888888887633

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=2.1e-26  Score=221.73  Aligned_cols=249  Identities=18%  Similarity=0.230  Sum_probs=143.4

Q ss_pred             cchhhhcCCCCCeeecccCcCccccChh----hhhCCCCCcEEEccCCcc---ceeCCccc-------cCCCCccEEecc
Q 038396           58 IPSWICNLNTVKNLVLSHNNLSGVLPQC----LGNFSDELSVLDLQGNNF---FGTIPDTF-------IKESRLGVIDLS  123 (456)
Q Consensus        58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~~L~~L~Ls~n~i---~~~~~~~~-------~~l~~L~~L~Ls  123 (456)
                      ++..+..+++|++|+|++|.+++..+..    +..++ +|++|++++|.+   ++.+|..+       ..+++|++|+++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            4445555666666666666665433222    33444 566666666432   22233322       455666666666


Q ss_pred             CCcCcc----cCCccccCCCCCcEEeCcCCcCCcCCCcccc----CC---------CCCCEEEccCCcccccCCCC--CC
Q 038396          124 HNLFQG----RIPRSLVNCSKLEFLDLGNNQISDTFPSWLG----TI---------PNLNVLILRSNKFYGIIKEP--RT  184 (456)
Q Consensus       124 ~N~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~l~~~~~~~--~~  184 (456)
                      +|++++    .++..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|+++......  ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            666664    2455566666666666666666533222222    22         56666666666664211000  01


Q ss_pred             ccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccc
Q 038396          185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP  264 (456)
Q Consensus       185 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (456)
                      +..+++|++|++++|.++..-......                                               .....+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~-----------------------------------------------~~l~~~  215 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLL-----------------------------------------------EGLAYC  215 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHH-----------------------------------------------TTGGGC
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHH-----------------------------------------------HHhhcC
Confidence            134556666666666654100000000                                               000013


Q ss_pred             ccccEEEccCCCCC----ccCchhhhccCCCCeEeCCCcccccc----CCccccC--CCCCCeeeCCCCcccc----cCc
Q 038396          265 DILTGIILSSNRFD----RVIPTSIANLKGLQVLNLDNNNLQGH----IPSCLGN--LTNLESLDLSNNRFSG----QIP  330 (456)
Q Consensus       265 ~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~--l~~L~~L~Ls~N~l~~----~~~  330 (456)
                      ++|+.|+|++|.++    ..+|..+..+++|+.|+|++|++++.    ++..+..  +++|++|+|++|.+++    .+|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            44777777777775    44566777888888888888888755    4555533  7888888888888886    367


Q ss_pred             hhh-hcCCCCCEEeccCCcCcccCC
Q 038396          331 QQL-VEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       331 ~~l-~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      ..+ .++++|++|++++|++++..|
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHhcCCCceEEEccCCcCCcchh
Confidence            666 567888888888888886654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=7.4e-26  Score=215.83  Aligned_cols=259  Identities=19%  Similarity=0.201  Sum_probs=172.2

Q ss_pred             EEEccCCccccccchhhhcCCCCCeeecccCcCccccC----hhhhhCCCCCcEEEccCCccceeCCccccCC-----CC
Q 038396           46 LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP----QCLGNFSDELSVLDLQGNNFFGTIPDTFIKE-----SR  116 (456)
Q Consensus        46 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l-----~~  116 (456)
                      .+.+++|.+++.+|..+...++|++|++++|.+++..+    ..+..++++|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45778888888888777777779999999998885555    5566665468899999998887666666664     88


Q ss_pred             ccEEeccCCcCcccCCcc----ccCC-CCCcEEeCcCCcCCcCCCcccc----C-CCCCCEEEccCCcccccCCCCC--C
Q 038396          117 LGVIDLSHNLFQGRIPRS----LVNC-SKLEFLDLGNNQISDTFPSWLG----T-IPNLNVLILRSNKFYGIIKEPR--T  184 (456)
Q Consensus       117 L~~L~Ls~N~l~~~~~~~----l~~l-~~L~~L~Ls~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~--~  184 (456)
                      |++|++++|++++..+..    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+.+.....+  .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            899999999888665554    3344 7899999999988866554433    3 3588999999988874322111  0


Q ss_pred             ccCCC-CccEEecccccCcCCCChhhhhCc-cccccccccCccccccccCCCCCccccccccccceeEeeccCccccccc
Q 038396          185 DCRFS-KLHIIDLSNNRFTGKLPSKSFLCL-DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNK  262 (456)
Q Consensus       185 ~~~l~-~L~~L~ls~n~l~~~~~~~~~~~l-~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (456)
                      +..++ +|++|++++|.+++..+ ..+... ..                                               
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~-----------------------------------------------  193 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNC-AELAKFLAS-----------------------------------------------  193 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHT-----------------------------------------------
T ss_pred             HhcCCccccEeeecCCCCchhhH-HHHHHHHHh-----------------------------------------------
Confidence            12333 88899999988874333 222111 00                                               


Q ss_pred             ccccccEEEccCCCCCccC----chhhhc-cCCCCeEeCCCccccccCC----ccccCCCCCCeeeCCCCccccc-----
Q 038396          263 IPDILTGIILSSNRFDRVI----PTSIAN-LKGLQVLNLDNNNLQGHIP----SCLGNLTNLESLDLSNNRFSGQ-----  328 (456)
Q Consensus       263 ~~~~L~~L~Ls~n~l~~~~----~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~~-----  328 (456)
                      .+.+|++|+|++|.+++..    +..+.. .++|++|+|++|++++..+    ..+..+++|++|+|++|.+.+.     
T Consensus       194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~  273 (362)
T 3goz_A          194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC  273 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred             CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence            0134777777777776632    333444 3478888888887775443    2345667788888888774422     


Q ss_pred             --CchhhhcCCCCCEEeccCCcCccc
Q 038396          329 --IPQQLVEFTFLEFFDVSDNYLTGA  352 (456)
Q Consensus       329 --~~~~l~~l~~L~~L~ls~N~l~~~  352 (456)
                        ++..+..+++|+.||+++|++...
T Consensus       274 ~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          274 KALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHhccCCceEEEecCCCcCCCc
Confidence              223455667777888888877655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=1.8e-23  Score=194.58  Aligned_cols=79  Identities=27%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             ccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC
Q 038396          267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD  346 (456)
Q Consensus       267 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~  346 (456)
                      |++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..  .+..+++|+.|++++
T Consensus       153 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccC
Confidence            5555555555555322  5566666666666666663322  566666666666666666433  256666666666666


Q ss_pred             CcCcc
Q 038396          347 NYLTG  351 (456)
Q Consensus       347 N~l~~  351 (456)
                      |++++
T Consensus       227 N~i~~  231 (308)
T 1h6u_A          227 QTITN  231 (308)
T ss_dssp             EEEEC
T ss_pred             Ceeec
Confidence            66654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=1.3e-23  Score=199.30  Aligned_cols=185  Identities=16%  Similarity=0.192  Sum_probs=129.4

Q ss_pred             CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh-hhhhCCCCCc-
Q 038396           18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ-CLGNFSDELS-   94 (456)
Q Consensus        18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~~L~-   94 (456)
                      ++++.++++++       .+|.. +++++.|+|++|+|+.+.+++|.++++|++|+|++|++.+.+|. +|.+++ +++ 
T Consensus        12 ~~v~C~~~~Lt-------~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~   83 (350)
T 4ay9_X           12 RVFLCQESKVT-------EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHE   83 (350)
T ss_dssp             TEEEEESTTCC-------SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCE
T ss_pred             CEEEecCCCCC-------ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhh
Confidence            67888888887       55654 46788888888888866666788888888888888887655554 456666 454 


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC-CcCCcCCCccccCCC-CCCEEEccC
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTIP-NLNVLILRS  172 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~-~L~~L~L~~  172 (456)
                      .+.+++|+++.+.|..|..+++|++|++++|++++..+..+....++..|++.+ +.+....+..|..+. .++.|++++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            466677888877778888888888888888888866666666667777787754 566655555666554 577788888


Q ss_pred             CcccccCCCCCCccCCCCccEEeccc-ccCcCCCChhhhhCcc
Q 038396          173 NKFYGIIKEPRTDCRFSKLHIIDLSN-NRFTGKLPSKSFLCLD  214 (456)
Q Consensus       173 n~l~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~  214 (456)
                      |+++.+.+..+   ...+|+++++++ |.++ .+|...|..++
T Consensus       164 N~i~~i~~~~f---~~~~L~~l~l~~~n~l~-~i~~~~f~~l~  202 (350)
T 4ay9_X          164 NGIQEIHNSAF---NGTQLDELNLSDNNNLE-ELPNDVFHGAS  202 (350)
T ss_dssp             SCCCEECTTSS---TTEEEEEEECTTCTTCC-CCCTTTTTTEE
T ss_pred             ccccCCChhhc---cccchhHHhhccCCccc-CCCHHHhccCc
Confidence            88777655444   335677777764 4444 66655454443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=4.2e-25  Score=208.60  Aligned_cols=251  Identities=17%  Similarity=0.123  Sum_probs=166.7

Q ss_pred             CCcEEEccCCccccccchhhhcC--CCCCeeecccCcCccccChhhhhCCCCCcEEEccCCcccee-CCccccCCCCccE
Q 038396           43 ETILYLVSNNSLTGEIPSWICNL--NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGV  119 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~  119 (456)
                      .++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..++ +|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4667777777665   3455555  7777777777777755444 44555 777788877777654 5666777777777


Q ss_pred             EeccCCcCcccCCccccCCCCCcEEeCcCC-cCCcC-CCccccCCCCCCEEEccCC-ccccc-CCCCCCccCCC-CccEE
Q 038396          120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNN-QISDT-FPSWLGTIPNLNVLILRSN-KFYGI-IKEPRTDCRFS-KLHII  194 (456)
Q Consensus       120 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~L  194 (456)
                      |++++|++++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+  ..++ +|++|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L  200 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQL  200 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEE
Confidence            888777777666677777777788887777 56542 4555667777777777777 66542 11112  4566 77777


Q ss_pred             eccccc--Cc-CCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEE
Q 038396          195 DLSNNR--FT-GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII  271 (456)
Q Consensus       195 ~ls~n~--l~-~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  271 (456)
                      ++++|.  ++ +.++. .+.                                                   .+++|++|+
T Consensus       201 ~l~~~~~~~~~~~l~~-~~~---------------------------------------------------~~~~L~~L~  228 (336)
T 2ast_B          201 NLSGYRKNLQKSDLST-LVR---------------------------------------------------RCPNLVHLD  228 (336)
T ss_dssp             ECCSCGGGSCHHHHHH-HHH---------------------------------------------------HCTTCSEEE
T ss_pred             EeCCCcccCCHHHHHH-HHh---------------------------------------------------hCCCCCEEe
Confidence            777773  32 01110 000                                                   134588888


Q ss_pred             ccCCC-CCccCchhhhccCCCCeEeCCCcc-ccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcC
Q 038396          272 LSSNR-FDRVIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL  349 (456)
Q Consensus       272 Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l  349 (456)
                      +++|. +++..+..+..+++|+.|++++|. ++......+..+++|++|++++| ++...-..+.  ..+..|++++|++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l  305 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF  305 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence            88888 666667788888999999999984 33333336778899999999988 5432222222  2366667899999


Q ss_pred             cccCCC
Q 038396          350 TGAIPL  355 (456)
Q Consensus       350 ~~~~p~  355 (456)
                      ++..|.
T Consensus       306 ~~~~~~  311 (336)
T 2ast_B          306 TTIARP  311 (336)
T ss_dssp             CCTTCS
T ss_pred             ccccCC
Confidence            887774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=4.1e-25  Score=212.76  Aligned_cols=235  Identities=19%  Similarity=0.225  Sum_probs=152.7

Q ss_pred             CCCCcEEEccCCccccccch----hhhcCCCCCeeecccC---cCccccChhh-------hhCCCCCcEEEccCCccce-
Q 038396           41 PPETILYLVSNNSLTGEIPS----WICNLNTVKNLVLSHN---NLSGVLPQCL-------GNFSDELSVLDLQGNNFFG-  105 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~~L~~L~Ls~n~i~~-  105 (456)
                      +++|+.|++++|.+++..+.    .+..+++|++|+|++|   .+++.+|..+       ..++ +|++|++++|.++. 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPT  109 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHH
Confidence            45666666666666654332    3556677777777764   3333444444       4555 67777777777765 


Q ss_pred             ---eCCccccCCCCccEEeccCCcCcccCCcccc----CC---------CCCcEEeCcCCcCC-cCCC---ccccCCCCC
Q 038396          106 ---TIPDTFIKESRLGVIDLSHNLFQGRIPRSLV----NC---------SKLEFLDLGNNQIS-DTFP---SWLGTIPNL  165 (456)
Q Consensus       106 ---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~l---------~~L~~L~Ls~n~i~-~~~~---~~~~~l~~L  165 (456)
                         .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|.++ ...+   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               3555666677777777777777643333332    23         77788888887776 2233   345567778


Q ss_pred             CEEEccCCcccc-----cCCCCCCccCCCCccEEecccccCcC----CCChhhhhCccccccccccCccccccccCCCCC
Q 038396          166 NVLILRSNKFYG-----IIKEPRTDCRFSKLHIIDLSNNRFTG----KLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ  236 (456)
Q Consensus       166 ~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~  236 (456)
                      ++|++++|++..     ..+..+  ..+++|++|++++|.++.    .+|. .+.                         
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~-------------------------  241 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI-ALK-------------------------  241 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-HGG-------------------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-HHc-------------------------
Confidence            888888887762     112123  567788888888887751    1111 011                         


Q ss_pred             ccccccccccceeEeeccCcccccccccccccEEEccCCCCCcc----Cchhhhc--cCCCCeEeCCCccccc----cCC
Q 038396          237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV----IPTSIAN--LKGLQVLNLDNNNLQG----HIP  306 (456)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~  306 (456)
                                                .+++|++|+|++|.+++.    ++..+..  +++|+.|+|++|.+++    .+|
T Consensus       242 --------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          242 --------------------------SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             --------------------------GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             --------------------------cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence                                      134588888888888765    4555533  8999999999999997    477


Q ss_pred             ccc-cCCCCCCeeeCCCCcccccCc
Q 038396          307 SCL-GNLTNLESLDLSNNRFSGQIP  330 (456)
Q Consensus       307 ~~l-~~l~~L~~L~Ls~N~l~~~~~  330 (456)
                      ..+ .++++|++|++++|++++..+
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHhcCCCceEEEccCCcCCcchh
Confidence            777 668999999999999987663

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=195.84  Aligned_cols=231  Identities=18%  Similarity=0.195  Sum_probs=177.8

Q ss_pred             CCCcEEEccCCccccccch---hhhcCCCCCeeecccCcCccccChhh--hhCCCCCcEEEccCCccceeCC----cccc
Q 038396           42 PETILYLVSNNSLTGEIPS---WICNLNTVKNLVLSHNNLSGVLPQCL--GNFSDELSVLDLQGNNFFGTIP----DTFI  112 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~~L~~L~Ls~n~i~~~~~----~~~~  112 (456)
                      ..++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+. +|++|++++|.+++..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhh
Confidence            4578888888877632111   12345779999999999998888887  7777 89999999999986544    3455


Q ss_pred             CCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcC--C--CccccCCCCCCEEEccCCcccccCCCCC-CccC
Q 038396          113 KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT--F--PSWLGTIPNLNVLILRSNKFYGIIKEPR-TDCR  187 (456)
Q Consensus       113 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~  187 (456)
                      .+++|++|++++|++++..+..|..+++|++|++++|++.+.  .  +..++.+++|++|++++|+++....... .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            789999999999999988888999999999999999997642  1  2334688999999999999975432211 1256


Q ss_pred             CCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccc
Q 038396          188 FSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDIL  267 (456)
Q Consensus       188 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  267 (456)
                      +++|++|++++|.+++..|.. +..+                                                ..+++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~-~~~~------------------------------------------------~~~~~L  253 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPS-APRC------------------------------------------------MWSSAL  253 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSC-CSSC------------------------------------------------CCCTTC
T ss_pred             CCCCCEEECCCCCCCccchhh-HHhc------------------------------------------------cCcCcC
Confidence            789999999999998655532 1111                                                013569


Q ss_pred             cEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccc
Q 038396          268 TGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG  327 (456)
Q Consensus       268 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  327 (456)
                      ++|++++|+++. +|..+.  ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       254 ~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          254 NSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            999999999996 455553  7999999999999954 43 6888999999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=4e-23  Score=195.90  Aligned_cols=241  Identities=17%  Similarity=0.187  Sum_probs=164.1

Q ss_pred             cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeC-CccccCCCCccE-Eec
Q 038396           45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-PDTFIKESRLGV-IDL  122 (456)
Q Consensus        45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~-L~L  122 (456)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+.+|.+++ +|++|+|++|++.+.+ +.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777777777 556554  35778888888888743334577777 7888888888875444 356777777664 556


Q ss_pred             cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC-CcccccCCCCCCccCC-CCccEEeccccc
Q 038396          123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS-NKFYGIIKEPRTDCRF-SKLHIIDLSNNR  200 (456)
Q Consensus       123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l-~~L~~L~ls~n~  200 (456)
                      ++|++++..|..|..+++|++|++++|.++...+..+....++..|++.+ +++..+....+  ..+ ..++.|++++|.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNG  165 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhcccccc
Confidence            66788777777788888888888888888766555555666677777754 55665554444  333 357778888887


Q ss_pred             CcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccC-CCCCc
Q 038396          201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSS-NRFDR  279 (456)
Q Consensus       201 l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~  279 (456)
                      ++ .++...|.                                                    ..+|++|++++ |.++.
T Consensus       166 i~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~~  192 (350)
T 4ay9_X          166 IQ-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLEE  192 (350)
T ss_dssp             CC-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCCC
T ss_pred             cc-CCChhhcc----------------------------------------------------ccchhHHhhccCCcccC
Confidence            76 55543221                                                    12377888874 67777


Q ss_pred             cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCc
Q 038396          280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY  348 (456)
Q Consensus       280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~  348 (456)
                      +.+..|..+++|++|+|++|+|+...+..|.   +|+.|.+.++.-...+|. +..+++|+.++++++.
T Consensus       193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          193 LPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             CCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            6667788999999999999999855444444   555555554433336663 7888999999998654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=4.2e-25  Score=224.94  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=47.1

Q ss_pred             cccccEEEccCCC--CCccCchhhh-ccCCCCeEeCCCcccccc-CCccccCCCCCCeeeCCCCccccc-CchhhhcCCC
Q 038396          264 PDILTGIILSSNR--FDRVIPTSIA-NLKGLQVLNLDNNNLQGH-IPSCLGNLTNLESLDLSNNRFSGQ-IPQQLVEFTF  338 (456)
Q Consensus       264 ~~~L~~L~Ls~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~  338 (456)
                      +++|+.|+++.|.  +++..+..+. .+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++.....+++
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS  514 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence            4556666665332  4433333332 256666666666666542 233345566666666666665533 2333345666


Q ss_pred             CCEEeccCCcCcc
Q 038396          339 LEFFDVSDNYLTG  351 (456)
Q Consensus       339 L~~L~ls~N~l~~  351 (456)
                      |++|++++|+++.
T Consensus       515 L~~L~ls~n~it~  527 (592)
T 3ogk_B          515 LRYLWVQGYRASM  527 (592)
T ss_dssp             CCEEEEESCBCCT
T ss_pred             cCeeECcCCcCCH
Confidence            6666666666553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.8e-22  Score=185.52  Aligned_cols=193  Identities=23%  Similarity=0.311  Sum_probs=163.4

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN   88 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   88 (456)
                      +.+  +++|++|++++|.++....+     ..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..
T Consensus        37 ~~~--l~~L~~L~l~~~~i~~l~~~-----~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~  105 (308)
T 1h6u_A           37 QAD--LDGITTLSAFGTGVTTIEGV-----QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAG  105 (308)
T ss_dssp             HHH--HHTCCEEECTTSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred             HHH--cCCcCEEEeeCCCccCchhh-----hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence            445  78999999999999832221     127899999999999996544  9999999999999999984 44 6888


Q ss_pred             CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396           89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL  168 (456)
Q Consensus        89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  168 (456)
                      ++ +|++|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++..+  +..+++|++|
T Consensus       106 l~-~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L  178 (308)
T 1h6u_A          106 LQ-SIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL  178 (308)
T ss_dssp             CT-TCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CC-CCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEE
Confidence            88 899999999999864 3 38899999999999999995543  8899999999999999986433  8999999999


Q ss_pred             EccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++++|++++..+    +..+++|++|++++|.++ .++.  +..+++|+.+++++|.+
T Consensus       179 ~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          179 KADDNKISDISP----LASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             ECCSSCCCCCGG----GGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEEEEE
T ss_pred             ECCCCccCcChh----hcCCCCCCEEEccCCccC-cccc--ccCCCCCCEEEccCCee
Confidence            999999987754    378999999999999998 4442  78899999999998876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=5.3e-22  Score=173.79  Aligned_cols=175  Identities=19%  Similarity=0.226  Sum_probs=153.1

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      -+.++.+++.++       .+|.. .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+. +|++
T Consensus         9 ~~~v~c~~~~l~-------~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~   80 (208)
T 2o6s_A            9 GTTVECYSQGRT-------SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTY   80 (208)
T ss_dssp             TTEEECCSSCCS-------SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred             CCEEEecCCCcc-------CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCE
Confidence            467899999887       44543 67899999999999987777899999999999999999965555677887 8999


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      |++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            99999999977777789999999999999999977777789999999999999999977777789999999999999976


Q ss_pred             cccCCCCCCccCCCCccEEecccccCcCCCChh
Q 038396          176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK  208 (456)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  208 (456)
                      .         +.+++|++|+++.|.++|.+|..
T Consensus       161 ~---------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          161 D---------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             C---------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             e---------cCCCCHHHHHHHHHhCCceeecc
Confidence            5         34678999999999999988853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.4e-23  Score=196.49  Aligned_cols=255  Identities=18%  Similarity=0.197  Sum_probs=191.5

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCCC--CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccc-cChhhhhCCC
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVPP--PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV-LPQCLGNFSD   91 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~   91 (456)
                      ..++.+|+++|.+..      .....+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..++ 
T Consensus        47 ~~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-  118 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS-  118 (336)
T ss_dssp             TTSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-
T ss_pred             hhheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC-
Confidence            348899999998751      111112  7899999999999977665 56799999999999999865 777788887 


Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCC-cCccc-CCccccCCCCCcEEeCcCC-cCCcC-CCccccCCC-CCC
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN-LFQGR-IPRSLVNCSKLEFLDLGNN-QISDT-FPSWLGTIP-NLN  166 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~-~L~  166 (456)
                      +|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            8999999999998888888999999999999999 67753 6667888999999999999 88854 566778899 999


Q ss_pred             EEEccCCc--cc-ccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396          167 VLILRSNK--FY-GIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI  242 (456)
Q Consensus       167 ~L~L~~n~--l~-~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~  242 (456)
                      +|++++|.  ++ +..+..  +..+++|++|++++|. +++..+. .+..                              
T Consensus       199 ~L~l~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~l~~------------------------------  245 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQ-EFFQ------------------------------  245 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTTCTTCCGGGGG-GGGG------------------------------
T ss_pred             EEEeCCCcccCCHHHHHHH--HhhCCCCCEEeCCCCCcCCHHHHH-HHhC------------------------------
Confidence            99999994  43 111222  2568999999999998 5533221 1222                              


Q ss_pred             ccccceeEeeccCcccccccccccccEEEccCCC-CCccCchhhhccCCCCeEeCCCccccccCCccccCC-CCCCeeeC
Q 038396          243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNR-FDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TNLESLDL  320 (456)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L  320 (456)
                                           +++|++|++++|. +.......+..+++|+.|++++| ++..   .+..+ ..+..|++
T Consensus       246 ---------------------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l  300 (336)
T 2ast_B          246 ---------------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQI  300 (336)
T ss_dssp             ---------------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEE
T ss_pred             ---------------------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEE
Confidence                                 2458888888884 33222235778899999999998 4422   33333 24777788


Q ss_pred             CCCcccccCchhhhc
Q 038396          321 SNNRFSGQIPQQLVE  335 (456)
Q Consensus       321 s~N~l~~~~~~~l~~  335 (456)
                      ++|++++..|..+..
T Consensus       301 ~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          301 NCSHFTTIARPTIGN  315 (336)
T ss_dssp             SCCCSCCTTCSSCSS
T ss_pred             ecccCccccCCcccc
Confidence            999999888776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.1e-21  Score=171.87  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=65.5

Q ss_pred             eeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCC
Q 038396           70 NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN  149 (456)
Q Consensus        70 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n  149 (456)
                      .++++++.++ .+|..+.   ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        11 ~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            3444444444 3333221   14555555555555444444555555555555555555444444555555555555555


Q ss_pred             cCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          150 QISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       150 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      .+++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCS
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccc
Confidence            5554444445555555555555555555443333  44555555666555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=2.5e-24  Score=219.21  Aligned_cols=108  Identities=12%  Similarity=0.061  Sum_probs=74.6

Q ss_pred             cccccEEEcc----CCCCCcc-----CchhhhccCCCCeEeCCCcc--ccccCCcccc-CCCCCCeeeCCCCcccc-cCc
Q 038396          264 PDILTGIILS----SNRFDRV-----IPTSIANLKGLQVLNLDNNN--LQGHIPSCLG-NLTNLESLDLSNNRFSG-QIP  330 (456)
Q Consensus       264 ~~~L~~L~Ls----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~Ls~N~l~~-~~~  330 (456)
                      +++|+.|+++    .|.+++.     .+..+..+++|+.|++++|.  +++..+..+. .+++|++|++++|++++ .++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            5567777775    5666653     22335667888888886543  5555444444 47889999999999876 345


Q ss_pred             hhhhcCCCCCEEeccCCcCcccC-CC-CCCCCCCCCcccCCCC
Q 038396          331 QQLVEFTFLEFFDVSDNYLTGAI-PL-GKQFATFDNTSFDGNS  371 (456)
Q Consensus       331 ~~l~~l~~L~~L~ls~N~l~~~~-p~-~~~~~~l~~~~~~~n~  371 (456)
                      ..+..+++|++|++++|++++.. +. ...++.++.+++.+|.
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            55678899999999999986542 21 1346678888888887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=5.2e-21  Score=168.74  Aligned_cols=151  Identities=21%  Similarity=0.240  Sum_probs=72.1

Q ss_pred             CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccc-hhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIP-SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      +.+++++|.++       .+|.. ...++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+. +|++
T Consensus        14 ~~l~~s~n~l~-------~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLN-------KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNE   85 (220)
T ss_dssp             TEEECCSSCCS-------SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCE
T ss_pred             CEeEeCCCCcc-------cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCE
Confidence            45566665554       23332 2344555555555554322 2344555555555555555433333444444 4555


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      |++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            55555555444444444445555555555554444444444444444444444444444444444444444444444444


Q ss_pred             c
Q 038396          176 Y  176 (456)
Q Consensus       176 ~  176 (456)
                      .
T Consensus       166 ~  166 (220)
T 2v70_A          166 N  166 (220)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=5.3e-21  Score=190.75  Aligned_cols=187  Identities=25%  Similarity=0.412  Sum_probs=98.4

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      +|+.|++++|.+++ +|..+.  + +|++|++++|.|+ .+|   ..+++|++|++++|++++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            56666666666653 444332  2 5666666666665 334   234556666666666654 443 433  5666666


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                      ++|.+++ +|.   .+++|+.|++++|++++++.      .+++|++|++++|.++ .+|.  +                
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~-~lp~--l----------------  178 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLT-FLPE--L----------------  178 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-CCCC--C----------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCC-Ccch--h----------------
Confidence            6666654 333   45556666666666554322      2345556666665555 2331  0                


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCC-------CeEeCCCc
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGL-------QVLNLDNN  299 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n  299 (456)
                                                           .++|+.|+|++|.++. +|. +..  +|       +.|+|++|
T Consensus       179 -------------------------------------~~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          179 -------------------------------------PESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCREN  217 (571)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSS
T ss_pred             -------------------------------------hCCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCC
Confidence                                                 0225566666666654 232 332  44       66666666


Q ss_pred             cccccCCccccCCCCCCeeeCCCCcccccCchhhhcC
Q 038396          300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF  336 (456)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l  336 (456)
                      +|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            666 455555556666666666666665555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=7.4e-21  Score=167.73  Aligned_cols=151  Identities=19%  Similarity=0.240  Sum_probs=86.7

Q ss_pred             CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE
Q 038396           18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL   96 (456)
Q Consensus        18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L   96 (456)
                      +.++++++.++       .+|.. .+.++.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+. +|++|
T Consensus        14 ~~v~c~~~~l~-------~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLT-------EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSL   85 (220)
T ss_dssp             TEEECTTSCCS-------SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEE
T ss_pred             CEEEcCCCCcC-------cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEE
Confidence            45666666665       33332 34566666666666655555566666666666666666655555555555 56666


Q ss_pred             EccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCccc
Q 038396           97 DLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus        97 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  176 (456)
                      +|++|.++...+..|.++++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+.
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666665444444555566666666666665555555555555666666655555544445555555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=3.3e-21  Score=192.23  Aligned_cols=181  Identities=24%  Similarity=0.414  Sum_probs=129.2

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR  171 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  171 (456)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            68888888888875 55544  267888888888887 555   346788888888888875 555 544  78888888


Q ss_pred             CCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396          172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM  251 (456)
Q Consensus       172 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (456)
                      +|++++++.      .+++|+.|++++|.++ .+|.                                            
T Consensus       129 ~N~l~~lp~------~l~~L~~L~Ls~N~l~-~lp~--------------------------------------------  157 (571)
T 3cvr_A          129 NNQLTMLPE------LPALLEYINADNNQLT-MLPE--------------------------------------------  157 (571)
T ss_dssp             SSCCSCCCC------CCTTCCEEECCSSCCS-CCCC--------------------------------------------
T ss_pred             CCcCCCCCC------cCccccEEeCCCCccC-cCCC--------------------------------------------
Confidence            888877533      3577888888888877 3442                                            


Q ss_pred             eccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCC-------CeeeCCCCc
Q 038396          252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL-------ESLDLSNNR  324 (456)
Q Consensus       252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~Ls~N~  324 (456)
                                 .+++|++|+|++|.+++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+
T Consensus       158 -----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          158 -----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             -----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred             -----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence                       02447788888888877 444 44  78888888888887 5555 543  66       888888888


Q ss_pred             ccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396          325 FSGQIPQQLVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       325 l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      |+ .+|..+..+++|+.|++++|++++.+|
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            87 577777778888888888888877665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=2.8e-21  Score=183.88  Aligned_cols=176  Identities=26%  Similarity=0.276  Sum_probs=134.2

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhh-cCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWIC-NLNTVKNLVLSHNNLSGVLPQCLGNFSDELS   94 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~   94 (456)
                      -+.+++++++++       .+|.. ...++.|++++|+|++..+..|. ++++|++|+|++|.+++..+..|..++ +|+
T Consensus        20 ~~~l~c~~~~l~-------~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~   91 (361)
T 2xot_A           20 SNILSCSKQQLP-------NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLR   91 (361)
T ss_dssp             TTEEECCSSCCS-------SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCC
T ss_pred             CCEEEeCCCCcC-------ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCC
Confidence            467888888887       45544 45688888888888877777776 888888888888888866666788877 788


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccc---cCCCCCCEEEcc
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL---GTIPNLNVLILR  171 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~  171 (456)
                      +|+|++|+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|   ..+++|+.|+|+
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            88888888887777778888888888888888887778888888888888888888885544444   467888888888


Q ss_pred             CCcccccCCCCCCccCCCC--ccEEecccccCc
Q 038396          172 SNKFYGIIKEPRTDCRFSK--LHIIDLSNNRFT  202 (456)
Q Consensus       172 ~n~l~~~~~~~~~~~~l~~--L~~L~ls~n~l~  202 (456)
                      +|+++++....+  ..++.  ++.|++++|++.
T Consensus       172 ~N~l~~l~~~~~--~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          172 SNKLKKLPLTDL--QKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SSCCCCCCHHHH--HHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCccCHHHh--hhccHhhcceEEecCCCcc
Confidence            888876643333  44554  377888888776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=1.3e-20  Score=173.70  Aligned_cols=176  Identities=22%  Similarity=0.338  Sum_probs=144.9

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN   88 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   88 (456)
                      +..  +++|++|++++|.+++...+     ..+++|+.|++++|++++..+  +..+++|++|++++|.+++ ++ .+..
T Consensus        42 ~~~--l~~L~~L~l~~~~i~~~~~~-----~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~  110 (291)
T 1h6t_A           42 QNE--LNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKD  110 (291)
T ss_dssp             HHH--HHTCCEEECTTSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             hhh--cCcccEEEccCCCcccChhH-----hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence            445  78899999999998733221     227899999999999996544  8899999999999999984 44 4788


Q ss_pred             CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396           89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL  168 (456)
Q Consensus        89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  168 (456)
                      ++ +|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+  +..+++|++|
T Consensus       111 l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          111 LK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             CT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence            87 899999999999864  4688899999999999999854  578899999999999999986544  8899999999


Q ss_pred             EccCCcccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396          169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS  207 (456)
Q Consensus       169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  207 (456)
                      ++++|.++++.  .+  ..+++|+.|++++|+++ ..|.
T Consensus       184 ~L~~N~i~~l~--~l--~~l~~L~~L~l~~n~i~-~~~~  217 (291)
T 1h6t_A          184 YLSKNHISDLR--AL--AGLKNLDVLELFSQECL-NKPI  217 (291)
T ss_dssp             ECCSSCCCBCG--GG--TTCTTCSEEEEEEEEEE-CCCE
T ss_pred             ECCCCcCCCCh--hh--ccCCCCCEEECcCCccc-CCcc
Confidence            99999998763  23  77899999999999987 4553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.4e-20  Score=179.11  Aligned_cols=154  Identities=26%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh-hCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396           45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG-NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS  123 (456)
Q Consensus        45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  123 (456)
                      +.++++++.++ .+|..+.  +.++.|+|++|.+++..+..+. .+. +|++|+|++|.|+++.+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            34555555555 2333222  2345555555555533333333 444 45555555555554444455555555555555


Q ss_pred             CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCc-cCCCCccEEecccccCc
Q 038396          124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD-CRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~ls~n~l~  202 (456)
                      +|++++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|++++++...+.. ..+++|+.|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            55555444444555555555555555555444445555555555555555554433222110 23444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=2.7e-20  Score=164.17  Aligned_cols=154  Identities=23%  Similarity=0.284  Sum_probs=135.1

Q ss_pred             CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396           44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS  123 (456)
Q Consensus        44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  123 (456)
                      -+.++++++.++ .+|..+.  ++|++|++++|.+++..+..|..+. +|++|++++|.+++..|..|.++++|++|+++
T Consensus        13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            367899999998 5565544  6899999999999966666788888 89999999999998889999999999999999


Q ss_pred             CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcC
Q 038396          124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTG  203 (456)
Q Consensus       124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  203 (456)
                      +|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..+  ..+++|++|++++|++..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCC
Confidence            999997766778999999999999999998888899999999999999999998877666  778999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=3.5e-20  Score=163.37  Aligned_cols=159  Identities=18%  Similarity=0.171  Sum_probs=140.4

Q ss_pred             CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC-hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396           44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP-QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL  122 (456)
Q Consensus        44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  122 (456)
                      -+.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..++ +|++|++++|.|++..+..|..+++|++|++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            468999999998 4666553  467899999999996645 3477888 8999999999999888889999999999999


Q ss_pred             cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      ++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+  ..+++|++|++++|.+.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCc
Confidence            9999998888889999999999999999998889999999999999999999999877777  78999999999999998


Q ss_pred             CCCChh
Q 038396          203 GKLPSK  208 (456)
Q Consensus       203 ~~~~~~  208 (456)
                      +..+..
T Consensus       167 c~c~l~  172 (220)
T 2v70_A          167 CNCYLA  172 (220)
T ss_dssp             CSGGGH
T ss_pred             CCCchH
Confidence            655533

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=5.5e-20  Score=163.27  Aligned_cols=151  Identities=20%  Similarity=0.269  Sum_probs=76.6

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      .+.++.+++.++       .+|.. .++|+.|++++|.+++..|..|..+++|++|+|++|.++...+..|..++ +|++
T Consensus        21 ~~~v~c~~~~l~-------~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHA-------SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTV   92 (229)
T ss_dssp             TTEEECTTSCCS-------SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred             CCEeEccCCCcC-------ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCE
Confidence            345555555554       33332 34555555555555555555555555555555555555432223344444 5555


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      |++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            555555555444444455555555555555555 4444455555555555555555544334444455555555555544


Q ss_pred             c
Q 038396          176 Y  176 (456)
Q Consensus       176 ~  176 (456)
                      .
T Consensus       172 ~  172 (229)
T 3e6j_A          172 D  172 (229)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=1.5e-20  Score=173.29  Aligned_cols=122  Identities=19%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396           68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  147 (456)
Q Consensus        68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  147 (456)
                      +..+.+..+.+++..+  +..+. +|++|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~-~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHhcCCCcccccc--hhhcC-cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            4444555666553322  23455 677777777777643 3 36666777777777777764333  6667777777777


Q ss_pred             CCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      +|.+++.  ..+..+++|++|++++|++.+..  .+  ..+++|+.|++++|.++
T Consensus        99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~~--~l--~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A           99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             SSCCCCG--GGGTTCTTCCEEECTTSCCCCCG--GG--GGCTTCCEEECCSSCCC
T ss_pred             CCcCCCC--hhhccCCCCCEEECCCCcCCCCh--hh--cCCCCCCEEEccCCcCC
Confidence            7776642  23566666666666666665431  11  44455555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=2.4e-22  Score=204.60  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=61.9

Q ss_pred             cccccEEEccCCCCCccCchhhhc-cCCCCeEeCCCccccccCCccc-cCCCCCCeeeCCCCcccccCch-hhhcCCCCC
Q 038396          264 PDILTGIILSSNRFDRVIPTSIAN-LKGLQVLNLDNNNLQGHIPSCL-GNLTNLESLDLSNNRFSGQIPQ-QLVEFTFLE  340 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~  340 (456)
                      +++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            46788888877 666554555554 7888888888888876555555 5688888888888888644333 334578888


Q ss_pred             EEeccCCcCc
Q 038396          341 FFDVSDNYLT  350 (456)
Q Consensus       341 ~L~ls~N~l~  350 (456)
                      .|++++|+++
T Consensus       510 ~L~l~~~~~~  519 (594)
T 2p1m_B          510 SLWMSSCSVS  519 (594)
T ss_dssp             EEEEESSCCB
T ss_pred             EEeeeCCCCC
Confidence            8888888874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=6.9e-23  Score=208.60  Aligned_cols=349  Identities=13%  Similarity=0.107  Sum_probs=214.5

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCC-ccccc-cchhhhcCCCCCeeecccCcCccccChhhh----
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNN-SLTGE-IPSWICNLNTVKNLVLSHNNLSGVLPQCLG----   87 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----   87 (456)
                      +++|++|+|++|.+++..  ...+...+++|+.|++++| .++.. ++..+.++++|++|++++|.+++..+..+.    
T Consensus       104 ~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            889999999999876210  0011112678999999988 55532 445556889999999999988765444443    


Q ss_pred             hCCCCCcEEEccCCc--ccee-CCccccCCCCccEEeccCC-cCcccCCccccCCCCCcEEeCcCCc-------------
Q 038396           88 NFSDELSVLDLQGNN--FFGT-IPDTFIKESRLGVIDLSHN-LFQGRIPRSLVNCSKLEFLDLGNNQ-------------  150 (456)
Q Consensus        88 ~l~~~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~n~-------------  150 (456)
                      .++ +|++|++++|.  ++.. ++..+..+++|++|++++| .+. .++..+..+++|++|+++.+.             
T Consensus       182 ~~~-~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          182 TYT-SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TCC-CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             cCC-cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            344 79999999886  2211 1222344688999999988 333 356666677777777765442             


Q ss_pred             -------------CCc----CCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396          151 -------------ISD----TFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL  213 (456)
Q Consensus       151 -------------i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l  213 (456)
                                   +..    .++..+..+++|++|++++|.+++..... ....+++|++|++++| +...........+
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-LLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH-HHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHH-HHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence                         111    12333335789999999999865431111 1246789999999988 4322112223356


Q ss_pred             cccccccccCcc--------ccccccCCCCCccccccccccceeEeeccCcc---cccccccccccEEEcc--C----CC
Q 038396          214 DAMKIVNTSQLR--------YLQDVISPYGQVSTDLISTYDYSLIMNSKGRM---MTYNKIPDILTGIILS--S----NR  276 (456)
Q Consensus       214 ~~l~~l~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls--~----n~  276 (456)
                      ++|+.|++..+.        .+....  ...+............ .......   ..+...+++|+.|+++  +    +.
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~--l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQG--LVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHH--HHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHH--HHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            778888773321        110000  0000000111111111 1111100   1111235789999999  4    56


Q ss_pred             CCccC-----chhhhccCCCCeEeCCCccccccCCccccC-CCCCCeeeCCCCcccccCchhh-hcCCCCCEEeccCCcC
Q 038396          277 FDRVI-----PTSIANLKGLQVLNLDNNNLQGHIPSCLGN-LTNLESLDLSNNRFSGQIPQQL-VEFTFLEFFDVSDNYL  349 (456)
Q Consensus       277 l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~ls~N~l  349 (456)
                      +++..     +..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            66422     22367789999999987 677666666655 8999999999999976555555 6799999999999999


Q ss_pred             cccCCC--CCCCCCCCCcccCCCCC
Q 038396          350 TGAIPL--GKQFATFDNTSFDGNSG  372 (456)
Q Consensus       350 ~~~~p~--~~~~~~l~~~~~~~n~~  372 (456)
                      ++....  ...++.++.+++.+|+.
T Consensus       494 ~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          494 GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            643321  23466788888888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=9.1e-20  Score=183.82  Aligned_cols=172  Identities=23%  Similarity=0.347  Sum_probs=129.1

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      +++|+.|++++|.|++...+     ..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.++ .+| .+..++ +|
T Consensus        42 L~~L~~L~l~~n~i~~l~~l-----~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~-~L  111 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLK-KL  111 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTG-----GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCT-TC
T ss_pred             CCCCCEEECcCCCCCCChHH-----ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCC-CC
Confidence            77888888888887632211     127788888888888886544  778888888888888887 344 577777 78


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      ++|+|++|.+++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            8888888888753  3577788888888888888754  567888888888888888876655  778888888888888


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  206 (456)
                      ++.++.  .+  ..+++|+.|++++|.+. ..|
T Consensus       186 ~i~~l~--~l--~~l~~L~~L~L~~N~l~-~~p  213 (605)
T 1m9s_A          186 HISDLR--AL--AGLKNLDVLELFSQECL-NKP  213 (605)
T ss_dssp             CCCBCG--GG--TTCTTCSEEECCSEEEE-CCC
T ss_pred             CCCCCh--HH--ccCCCCCEEEccCCcCc-CCc
Confidence            887752  23  66788888888888887 444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.9e-19  Score=159.71  Aligned_cols=157  Identities=19%  Similarity=0.177  Sum_probs=138.0

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      ..-+.++.+++.++ .+|..+.  ++|++|+|++|.+++..|..+..+. +|++|++++|.++...+..|..+++|++|+
T Consensus        19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            34678999999998 5665443  8999999999999987788888888 899999999999877777889999999999


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|+++++.+..+  ..+++|+.|++++|.+
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCB
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCc
Confidence            9999999777778899999999999999998 778889999999999999999998876555  7889999999999998


Q ss_pred             cCCC
Q 038396          202 TGKL  205 (456)
Q Consensus       202 ~~~~  205 (456)
                      .+..
T Consensus       172 ~c~c  175 (229)
T 3e6j_A          172 DCEC  175 (229)
T ss_dssp             CTTB
T ss_pred             cCCc
Confidence            8543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=6.5e-20  Score=184.89  Aligned_cols=127  Identities=27%  Similarity=0.419  Sum_probs=62.9

Q ss_pred             hcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc
Q 038396           63 CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE  142 (456)
Q Consensus        63 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  142 (456)
                      ..+++|+.|++++|.+. .++ .+..++ +|+.|+|++|.+++..+  +..+++|+.|+|++|++++ ++ .+..+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-SVQ-GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-CCT-TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             hcCCCCCEEECcCCCCC-CCh-HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            44555555555555554 232 344444 55555555555553332  4455555555555555542 22 355555555


Q ss_pred             EEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          143 FLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       143 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      .|+|++|.+++.  ..+..+++|+.|+|++|.+.++  ..+  ..+++|+.|+|++|.+.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG--GSCTTCSEEECCSSCCC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhh--cccCCCCEEECcCCcCC
Confidence            555555555432  2344555555555555555443  112  44455555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.9e-19  Score=155.92  Aligned_cols=151  Identities=18%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +++++.|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..++ +|++|++++|.+++..+..|..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            567788888888887 445 5778888888888888775 33 3677777 78888888888887677778888888888


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCc-CCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ-ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN  199 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n  199 (456)
                      ++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++..  .+  ..+++|++|++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l--~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GI--EDFPKLNQLYAFSQ  191 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TG--GGCSSCCEEEECBC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--Hh--ccCCCCCEEEeeCc
Confidence            888888887677778888888888888887 65 344 5778888888888888887653  33  67788888888888


Q ss_pred             cCc
Q 038396          200 RFT  202 (456)
Q Consensus       200 ~l~  202 (456)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=2.1e-19  Score=155.67  Aligned_cols=151  Identities=13%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             hcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc
Q 038396           63 CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE  142 (456)
Q Consensus        63 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  142 (456)
                      ..+++|++|++++|.++ .+| .+..++ +|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34445555555555554 333 344444 45555555554431  12344555555555555555544444555555555


Q ss_pred             EEeCcCCcCCcCCCccccCCCCCCEEEccCCc-ccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccc
Q 038396          143 FLDLGNNQISDTFPSWLGTIPNLNVLILRSNK-FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT  221 (456)
Q Consensus       143 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l  221 (456)
                      +|++++|.+++..+..++.+++|++|++++|+ +..+.  .  +..+++|++|++++|.++ .++  .+..+++|+.+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~--l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~L~~L~l  188 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--P--LKTLPELKSLNIQFDGVH-DYR--GIEDFPKLNQLYA  188 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--G--GGGCSSCCEEECTTBCCC-CCT--TGGGCSSCCEEEE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--h--hcCCCCCCEEECCCCCCc-ChH--HhccCCCCCEEEe
Confidence            55555555554444445555555555555554 33331  1  144455555555555554 232  2444555555555


Q ss_pred             cCcc
Q 038396          222 SQLR  225 (456)
Q Consensus       222 ~~~~  225 (456)
                      ++|+
T Consensus       189 ~~N~  192 (197)
T 4ezg_A          189 FSQT  192 (197)
T ss_dssp             CBC-
T ss_pred             eCcc
Confidence            5443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=2.7e-19  Score=162.23  Aligned_cols=40  Identities=25%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             hhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccc
Q 038396          285 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS  326 (456)
Q Consensus       285 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  326 (456)
                      +..+++|+.|++++|++++.  ..+..+++|+.|++++|+++
T Consensus       146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            44445555555555555433  33444445555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=2.5e-19  Score=162.46  Aligned_cols=172  Identities=23%  Similarity=0.296  Sum_probs=137.4

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      +.++..+++++|.+++...+     ..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..++ +|
T Consensus        18 l~~l~~l~l~~~~i~~~~~~-----~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~-~L   87 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQ-----KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLT-KL   87 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECH-----HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCS-SC
T ss_pred             HHHHHHHHhcCCCcccccch-----hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCC-CC
Confidence            55688888999988722111     127889999999999984 45 68889999999999999984 444 78887 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      ++|++++|++++. |. +.. ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .++.+++|++|++++|
T Consensus        88 ~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           88 EELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred             CEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence            9999999999854 33 233 899999999999985 33 588999999999999999865 3 6888999999999999


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS  207 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  207 (456)
                      ++++.  ..+  ..+++|+.|++++|.++ ..|.
T Consensus       161 ~i~~~--~~l--~~l~~L~~L~l~~N~~~-~~~~  189 (263)
T 1xeu_A          161 EITNT--GGL--TRLKKVNWIDLTGQKCV-NEPV  189 (263)
T ss_dssp             CCCBC--TTS--TTCCCCCEEEEEEEEEE-CCCE
T ss_pred             cCcch--HHh--ccCCCCCEEeCCCCccc-CCcc
Confidence            99887  334  77899999999999988 4453

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=4.4e-21  Score=192.28  Aligned_cols=204  Identities=22%  Similarity=0.158  Sum_probs=134.6

Q ss_pred             hcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCc-------------cceeCCccccCCCCccEEe-ccCCcCc
Q 038396           63 CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN-------------FFGTIPDTFIKESRLGVID-LSHNLFQ  128 (456)
Q Consensus        63 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~N~l~  128 (456)
                      ..+++|+.|+|++|.++ .+|..++.+. +|++|++++|.             ..+..|..+..+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45778888888888887 7888888888 78888887764             3344555666666666666 5555432


Q ss_pred             ccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChh
Q 038396          129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK  208 (456)
Q Consensus       129 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  208 (456)
                                 .|+.+.+++|.++...+      ..|+.|++++|.+++++.  +  ..+++|+.|++++|.++ .+|..
T Consensus       424 -----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~--~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          424 -----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--L--EQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--G--GGGTTCCEEECCSSCCC-CCCGG
T ss_pred             -----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--c--cccccCcEeecCccccc-ccchh
Confidence                       23334444555542211      247777777777776531  3  66777777777777776 55532


Q ss_pred             hhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhcc
Q 038396          209 SFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL  288 (456)
Q Consensus       209 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  288 (456)
                       +..                                                   +++|+.|+|++|.+++ +| .+..+
T Consensus       482 -~~~---------------------------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          482 -LAA---------------------------------------------------LRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             -GGG---------------------------------------------------CTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             -hhc---------------------------------------------------CCCCCEEECCCCCCCC-Cc-ccCCC
Confidence             222                                                   2336677777777776 44 67777


Q ss_pred             CCCCeEeCCCccccccC-CccccCCCCCCeeeCCCCcccccCch---hhhcCCCCCEEec
Q 038396          289 KGLQVLNLDNNNLQGHI-PSCLGNLTNLESLDLSNNRFSGQIPQ---QLVEFTFLEFFDV  344 (456)
Q Consensus       289 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~l  344 (456)
                      ++|+.|+|++|++++.. |..+..+++|+.|+|++|++++..|.   .+..+++|+.|++
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888888888887665 77788888888888888887755432   2344777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=6.5e-20  Score=189.47  Aligned_cols=142  Identities=25%  Similarity=0.275  Sum_probs=78.2

Q ss_pred             cchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccC
Q 038396           58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN  137 (456)
Q Consensus        58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  137 (456)
                      .++.|..++.|+.|+|++|.+. .+|..++.+. +|++|+|++|.|+ .+|..|..+++|++|+|++|+++ .+|..|..
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3555666666666666666665 5555555555 5666666666666 55555666666666666666666 45666666


Q ss_pred             CCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCC-CCccEEecccccCcCCCC
Q 038396          138 CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF-SKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       138 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~  206 (456)
                      +++|++|+|++|.|+ .+|..|+.+++|++|+|++|.+++..+..+  ..+ ..+..+++++|.+++.+|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~--~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL--TEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH--HHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH--hhcchhhhHHhhccCcccCcCc
Confidence            666666666666665 445556666666666666666655443322  111 111234555666555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=5.7e-19  Score=152.15  Aligned_cols=113  Identities=20%  Similarity=0.319  Sum_probs=85.0

Q ss_pred             cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396          266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS  345 (456)
Q Consensus       266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls  345 (456)
                      .|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            36667777777777677788888888888888888888888788888888888888888888888888888888889999


Q ss_pred             CCcCcccCCCCCCCCCCCCcccCCCCCCCCCCC
Q 038396          346 DNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       346 ~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      +|+++|.++..+....+....+.++...|+.|.
T Consensus       135 ~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            988888877543322233334455555666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=8.7e-18  Score=144.70  Aligned_cols=127  Identities=22%  Similarity=0.309  Sum_probs=64.1

Q ss_pred             CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccch-hhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPS-WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      +++++++|+++       .+|.. ...++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+. +|++
T Consensus        11 ~~l~~s~~~l~-------~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLK-------EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQE   82 (192)
T ss_dssp             TEEECTTSCCS-------SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCE
T ss_pred             CEEEcCCCCcC-------cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCE
Confidence            55666666654       33332 23555555555555544332 245555555555555555544444455544 4555


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      |++++|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|.++
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            555555555444444555555555555555555444444444444555554444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=4.5e-21  Score=192.18  Aligned_cols=192  Identities=21%  Similarity=0.239  Sum_probs=152.0

Q ss_pred             hhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCc-------------CcccCCccccCCCCCcEEe-CcCCcCC
Q 038396           87 GNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL-------------FQGRIPRSLVNCSKLEFLD-LGNNQIS  152 (456)
Q Consensus        87 ~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~i~  152 (456)
                      ...+ +|+.|+|++|.++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+ 
T Consensus       346 ~~~~-~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDE-QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTT-TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccCc-cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence            3455 8999999999998 789999999999999998775             3445555666666666666 454433 


Q ss_pred             cCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccC
Q 038396          153 DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVIS  232 (456)
Q Consensus       153 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~  232 (456)
                                .+|+.+.+++|.+..+.+        ..|+.|++++|.++ .+|.  +..                    
T Consensus       423 ----------~~L~~l~l~~n~i~~l~~--------~~L~~L~Ls~n~l~-~lp~--~~~--------------------  461 (567)
T 1dce_A          423 ----------DDLRSKFLLENSVLKMEY--------ADVRVLHLAHKDLT-VLCH--LEQ--------------------  461 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHH--------TTCSEEECTTSCCS-SCCC--GGG--------------------
T ss_pred             ----------chhhhhhhhcccccccCc--------cCceEEEecCCCCC-CCcC--ccc--------------------
Confidence                      234455566666665422        25889999999998 4552  322                    


Q ss_pred             CCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCC
Q 038396          233 PYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL  312 (456)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  312 (456)
                                                     +++|+.|+|++|.++. +|..+..+++|+.|+|++|++++ +| .++.+
T Consensus       462 -------------------------------l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          462 -------------------------------LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             -------------------------------GTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             -------------------------------cccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence                                           3458999999999995 68899999999999999999995 66 89999


Q ss_pred             CCCCeeeCCCCcccccC-chhhhcCCCCCEEeccCCcCcccCCCC
Q 038396          313 TNLESLDLSNNRFSGQI-PQQLVEFTFLEFFDVSDNYLTGAIPLG  356 (456)
Q Consensus       313 ~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~ls~N~l~~~~p~~  356 (456)
                      ++|+.|+|++|+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            99999999999999776 999999999999999999999887743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=8e-19  Score=181.29  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=80.6

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCC-----eeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCC
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVK-----NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKES  115 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~-----~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~  115 (456)
                      .+.++.|++.+|.+.. .+..+-....|.     .++++.|.+. ..+..+..+. .|++|+|++|.+. .+|..+..++
T Consensus       172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~  247 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIF-NISANIFKYD  247 (727)
T ss_dssp             ----------------------------------------------------CCC-CCCEEECTTSCCS-CCCGGGGGCC
T ss_pred             CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCC-CCcEEECCCCCCC-CCChhhcCCC
Confidence            3557777887777774 333222222222     2223333333 4455666666 6777777777777 5555555777


Q ss_pred             CccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEe
Q 038396          116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID  195 (456)
Q Consensus       116 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  195 (456)
                      +|++|+|++|.++ .+|..|..+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++.++ ..+  ..+++|++|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp-~~~--~~l~~L~~L~  322 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLP-WEF--GNLCNLQFLG  322 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCC-SST--TSCTTCCCEE
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccC-hhh--hcCCCccEEe
Confidence            7777777777777 66777777777777777777777 56777777777777777777776543 233  6677777777


Q ss_pred             cccccCcCCCC
Q 038396          196 LSNNRFTGKLP  206 (456)
Q Consensus       196 ls~n~l~~~~~  206 (456)
                      |++|.+++.+|
T Consensus       323 L~~N~l~~~~p  333 (727)
T 4b8c_D          323 VEGNPLEKQFL  333 (727)
T ss_dssp             CTTSCCCSHHH
T ss_pred             CCCCccCCCCh
Confidence            77777775444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=6.6e-18  Score=158.56  Aligned_cols=271  Identities=13%  Similarity=0.089  Sum_probs=176.5

Q ss_pred             CCCCcEEEccCCccccccchhhhc-CCCCCeeecccCcCc--cccChhhhhCCCCCcEEEccCCccceeCCccccC----
Q 038396           41 PPETILYLVSNNSLTGEIPSWICN-LNTVKNLVLSHNNLS--GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIK----  113 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~----  113 (456)
                      ..+++.|.++++ +.......+.. +++|++|||++|++.  ...+.   ..+ .+..+.+..|.   +.+.+|.+    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHhcccccc
Confidence            456788887764 22222234444 678888888888887  22211   122 23445555553   34456777    


Q ss_pred             ----CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc----cccCCCCCCc
Q 038396          114 ----ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF----YGIIKEPRTD  185 (456)
Q Consensus       114 ----l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~  185 (456)
                          +++|+.|++.+ .++.+.+.+|.++++|+.+++++|.+....+.+|..+.++..+.+..+..    ..+.  ...+
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~--~~~f  172 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE--HFAF  172 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT--TSCE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc--cccc
Confidence                88888888888 78777777888888888888888888777777888877777776655322    1121  1222


Q ss_pred             cCCCCcc-EEecccccCcCCCChhhhhC---ccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccc
Q 038396          186 CRFSKLH-IIDLSNNRFTGKLPSKSFLC---LDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYN  261 (456)
Q Consensus       186 ~~l~~L~-~L~ls~n~l~~~~~~~~~~~---l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (456)
                      ..+..|+ .+.+...   +.++...+..   ..++..+.+.+.-.....                           ..+.
T Consensus       173 ~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~---------------------------~~l~  222 (329)
T 3sb4_A          173 IEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADF---------------------------KLIR  222 (329)
T ss_dssp             EESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHH---------------------------HHHH
T ss_pred             ccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHH---------------------------HHHH
Confidence            4455555 3433321   1223222222   233333333332110000                           0001


Q ss_pred             cccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCC-eeeCCCCcccccCchhhhcCCCCC
Q 038396          262 KIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE-SLDLSNNRFSGQIPQQLVEFTFLE  340 (456)
Q Consensus       262 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~  340 (456)
                      ..+++|+.++|++|.++.+.+..|.++++|+.|+|.+| ++.+.+.+|.++++|+ .+++.+ .++...+..|.++++|+
T Consensus       223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            12466999999999999988889999999999999998 8778888899999999 999998 77767778899999999


Q ss_pred             EEeccCCcCcccCC
Q 038396          341 FFDVSDNYLTGAIP  354 (456)
Q Consensus       341 ~L~ls~N~l~~~~p  354 (456)
                      .+++++|.++..-+
T Consensus       301 ~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          301 YVLATGDKITTLGD  314 (329)
T ss_dssp             EEEECSSCCCEECT
T ss_pred             EEEeCCCccCccch
Confidence            99999999875443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=6.2e-18  Score=142.45  Aligned_cols=132  Identities=22%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             CCCcEEEccCCccc-cccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           42 PETILYLVSNNSLT-GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        42 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..++ +|++|++++|.+++.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            44555555555554 34444444555555555555555422  3344444 45555555555544344444444555555


Q ss_pred             eccCCcCcccC-CccccCCCCCcEEeCcCCcCCcCCC---ccccCCCCCCEEEccCCccc
Q 038396          121 DLSHNLFQGRI-PRSLVNCSKLEFLDLGNNQISDTFP---SWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus       121 ~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~  176 (456)
                      ++++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55555544321 1344444555555555555443322   23444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=4.8e-17  Score=140.05  Aligned_cols=107  Identities=25%  Similarity=0.358  Sum_probs=47.2

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      +|++|++++|.++ .+|..+..+. +|++|++++|.|++..+..|.++++|++|++++|++++..+..|..+++|++|+|
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            3444444444444 3344444444 4444444444444443444444444444444444444444444444444444444


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      ++|.++...+..|..+++|+.|++++|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            44444433333344444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=5.9e-17  Score=139.45  Aligned_cols=128  Identities=23%  Similarity=0.250  Sum_probs=115.6

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV   95 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~   95 (456)
                      -+++++++|+++       .+|.. .++++.|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+. +|++
T Consensus        12 ~~~l~~~~~~l~-------~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~   82 (193)
T 2wfh_A           12 DTVVRCSNKGLK-------VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLT   82 (193)
T ss_dssp             TTEEECTTSCCS-------SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred             CCEEEcCCCCCC-------cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCE
Confidence            478999999987       45543 578999999999999 6778999999999999999999977777899998 8999


Q ss_pred             EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc
Q 038396           96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD  153 (456)
Q Consensus        96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  153 (456)
                      |++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+..
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999999998888899999999999999999997777789999999999999999863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.2e-17  Score=156.83  Aligned_cols=264  Identities=14%  Similarity=0.093  Sum_probs=162.0

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccc--cccchhhhcCCCCCeeecccCcCccccChhhhh---
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLT--GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN---   88 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---   88 (456)
                      +.+|++|.++++- .. .++. .+...+++|+.|||++|++.  ...+..+   +.++.+.+..|.|.   +.+|.+   
T Consensus        24 ~~~l~~L~l~g~i-~~-~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NA-EDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEEE-CH-HHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEET
T ss_pred             hCceeEEEEeccc-cH-HHHH-HHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhccccc
Confidence            4567777777642 10 0010 11111567778888877776  2222222   22344444444222   233444   


Q ss_pred             -----CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcC----CcCCCccc
Q 038396           89 -----FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI----SDTFPSWL  159 (456)
Q Consensus        89 -----l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i----~~~~~~~~  159 (456)
                           +. +|+.|++.+ .++.+.+.+|.++++|+.|++++|.+..+.+.+|.++.++..+.+..+..    ......+|
T Consensus        95 ~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A           95 GVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             TEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             ccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence                 55 677777766 66656666677777777777777766656666666666666666554221    11122233


Q ss_pred             cCCCCC--------------------------CEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396          160 GTIPNL--------------------------NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL  213 (456)
Q Consensus       160 ~~l~~L--------------------------~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l  213 (456)
                      .++..|                          ..+.+.++-.. .....+ ...+++|+.+++++|.++ .++..+|.++
T Consensus       173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l-~~~~~~L~~l~L~~n~i~-~I~~~aF~~~  249 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLI-RDYMPNLVSLDISKTNAT-TIPDFTFAQK  249 (329)
T ss_dssp             EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHH-HHHCTTCCEEECTTBCCC-EECTTTTTTC
T ss_pred             ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHH-HHhcCCCeEEECCCCCcc-eecHhhhhCC
Confidence            333333                          34443332110 000000 013689999999999988 7887777665


Q ss_pred             cccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCC-
Q 038396          214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ-  292 (456)
Q Consensus       214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-  292 (456)
                      .+                                                   |++|++.+| ++.+.+.+|.++++|+ 
T Consensus       250 ~~---------------------------------------------------L~~l~l~~n-i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          250 KY---------------------------------------------------LLKIKLPHN-LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             TT---------------------------------------------------CCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             CC---------------------------------------------------CCEEECCcc-cceehHHHhhCChhccE
Confidence            44                                                   666667666 6677778899999999 


Q ss_pred             eEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEec
Q 038396          293 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDV  344 (456)
Q Consensus       293 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  344 (456)
                      .+++.+ .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999988 777677888999999999999999998777778999999998863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=1.4e-17  Score=140.37  Aligned_cols=137  Identities=20%  Similarity=0.218  Sum_probs=116.9

Q ss_pred             cCCCCCeeecccCcCc-cccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc
Q 038396           64 NLNTVKNLVLSHNNLS-GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE  142 (456)
Q Consensus        64 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  142 (456)
                      ..++|++|++++|.++ +.+|..+..++ +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3478999999999997 67888888888 899999999999865  7788999999999999999977888888899999


Q ss_pred             EEeCcCCcCCcCC-CccccCCCCCCEEEccCCcccccCC---CCCCccCCCCccEEecccccCcCCCC
Q 038396          143 FLDLGNNQISDTF-PSWLGTIPNLNVLILRSNKFYGIIK---EPRTDCRFSKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       143 ~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~  206 (456)
                      +|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+  ..+++|++|++++|.+. ++|
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSC-BCC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChh-hcc
Confidence            9999999998643 2688899999999999999987754   233  67899999999999887 555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=1.6e-16  Score=134.89  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      +|++|++++|.+++..+..+..+. +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            444555555555433333334444 4555555555555444444555555555555555555444444555555666666


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcccc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYG  177 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  177 (456)
                      ++|.+++..+..+..+++|++|++++|.+.+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6666554444444555666666666665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=1.3e-17  Score=137.50  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             CCcEEEccCCccc-cccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           43 ETILYLVSNNSLT-GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        43 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      +++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..++ +|++|++++|.+++.+|..+..+++|++|+
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            3444444444443 33333344444444444444444422  2333333 344444444444433333333344444444


Q ss_pred             ccCCcCccc-CCccccCCCCCcEEeCcCCcCC
Q 038396          122 LSHNLFQGR-IPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus       122 Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      +++|++++. .+..+..+++|++|++++|.++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            444444321 1133444444444444444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=2.2e-16  Score=134.16  Aligned_cols=133  Identities=21%  Similarity=0.239  Sum_probs=116.6

Q ss_pred             CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396           68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  147 (456)
Q Consensus        68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  147 (456)
                      .+.+++++|.++ .+|..+.  . +|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC--C-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            578899999998 6675543  3 89999999999998777788999999999999999997777778999999999999


Q ss_pred             CCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396          148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP  206 (456)
Q Consensus       148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  206 (456)
                      +|.+++..+..+..+++|++|++++|+++++++..+  ..+++|++|++++|.+.+..+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            999998777788999999999999999998876555  778999999999999986544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=1.5e-15  Score=145.64  Aligned_cols=241  Identities=15%  Similarity=0.110  Sum_probs=129.7

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      ..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++..-..+|.+.  +|+.+.+.. .++.+.+.+|.++.+|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            3444444432 3443444555553 5666666554 443434445442  466666664 45545556666666666666


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +++|+++.+...+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.+....|  .. .+|+.+.+. +.+
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLP-NGV  259 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEE-TTC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeC-CCc
Confidence            666666644444554 466666666533 44455556666666666666653 444444444  33 456666663 334


Q ss_pred             cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC---
Q 038396          202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD---  278 (456)
Q Consensus       202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---  278 (456)
                      + .++..+|.++.+|+.+                                                   ++.+|.+.   
T Consensus       260 ~-~I~~~aF~~c~~L~~l---------------------------------------------------~l~~~~~~~~~  287 (401)
T 4fdw_A          260 T-NIASRAFYYCPELAEV---------------------------------------------------TTYGSTFNDDP  287 (401)
T ss_dssp             C-EECTTTTTTCTTCCEE---------------------------------------------------EEESSCCCCCT
T ss_pred             c-EEChhHhhCCCCCCEE---------------------------------------------------EeCCccccCCc
Confidence            4 4555555555554444                                                   44443332   


Q ss_pred             --ccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396          279 --RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       279 --~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~  350 (456)
                        .+....|.++++|+.++|. +.++.....+|.++++|+.++|..| ++..-...|.++ +|+.+++++|.+.
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence              3344556666666666665 3355455555666666666666443 443444555555 6666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=3.1e-17  Score=135.21  Aligned_cols=128  Identities=24%  Similarity=0.269  Sum_probs=82.4

Q ss_pred             CCCCCeeecccCcCc-cccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396           65 LNTVKNLVLSHNNLS-GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  143 (456)
Q Consensus        65 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  143 (456)
                      .++|++|++++|.++ +.+|..+..++ +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            356777777777776 55666666666 677777777777654  55666777777777777776556666666677777


Q ss_pred             EeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCC---CCCCccCCCCccEEecc
Q 038396          144 LDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIK---EPRTDCRFSKLHIIDLS  197 (456)
Q Consensus       144 L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~ls  197 (456)
                      |++++|.+++. .+..++.+++|++|++++|.+++..+   ..+  ..+++|++|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF--KLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH--HHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH--HHCCCcccccCC
Confidence            77777777643 23556666777777777776665533   122  556666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=3.7e-15  Score=142.88  Aligned_cols=267  Identities=11%  Similarity=0.109  Sum_probs=197.7

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      +..++.+.+..+ ++   .+....+.. .+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++..-+.+|.++. +|
T Consensus       112 ~~~l~~i~ip~~-i~---~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L  182 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK---SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NL  182 (401)
T ss_dssp             CSSCSEEECCTT-CC---EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT-TC
T ss_pred             cCCccEEEECCc-cC---EehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc-cC
Confidence            466777777654 33   122222222 36889998776 776777788884 699999986 66656667788888 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN  173 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  173 (456)
                      +.+++++|.++.+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+
T Consensus       183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~  257 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN  257 (401)
T ss_dssp             CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred             CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence            9999999999977777776 589999999855 77677888999999999999875 55566677777 78999999 45


Q ss_pred             cccccCCCCCCccCCCCccEEecccccCc----CCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396          174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFT----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL  249 (456)
Q Consensus       174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (456)
                      .++.+....|  ..+++|+.+++.+|.+.    ..++..+|.++.+                                  
T Consensus       258 ~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~----------------------------------  301 (401)
T 4fdw_A          258 GVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK----------------------------------  301 (401)
T ss_dssp             TCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT----------------------------------
T ss_pred             CccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhCCcc----------------------------------
Confidence            5776766666  78899999999887664    1244444544443                                  


Q ss_pred             EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396          250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI  329 (456)
Q Consensus       250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  329 (456)
                                       |+.+++. +.++.+...+|.++++|+.++|..+ ++.....+|.++ +|+.+++++|.+....
T Consensus       302 -----------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          302 -----------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             -----------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             -----------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence                             5566665 3466666778888999999999655 766777888888 9999999999887666


Q ss_pred             chhhhcCC-CCCEEeccCCcCc
Q 038396          330 PQQLVEFT-FLEFFDVSDNYLT  350 (456)
Q Consensus       330 ~~~l~~l~-~L~~L~ls~N~l~  350 (456)
                      +..|..++ .+..|.+..+.+.
T Consensus       362 ~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          362 EKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSSCCCSCTTCCEEEECGGGHH
T ss_pred             cccccCCCCCccEEEeCHHHHH
Confidence            67777774 7888888877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=4.4e-16  Score=132.07  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396           62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  141 (456)
Q Consensus        62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  141 (456)
                      +.++.+|++|++++|.++ .+|. +..+.++|++|++++|.+++.  ..|..+++|++|++++|++++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            556677788888888777 4444 444433688888888888765  567778888888888888886555555778888


Q ss_pred             cEEeCcCCcCCcCCCc--cccCCCCCCEEEccCCcccccCCC-CCCccCCCCccEEecccccCc
Q 038396          142 EFLDLGNNQISDTFPS--WLGTIPNLNVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       142 ~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      ++|++++|.++ .+|.  .+..+++|++|++++|.+...+.. ...+..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888888886 4444  677788888888888887755321 001356788888888887664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=6.7e-16  Score=130.93  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=52.9

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCc--cccCCCCCcEE
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFL  144 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L  144 (456)
                      +|++|++++|.+++.  ..+..++ +|++|++++|.+++..+..|..+++|++|++++|+++ .+|.  .+..+++|++|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            555555555555432  3344444 4555555555555443333455555555555555554 2333  45555555555


Q ss_pred             eCcCCcCCcCCCc----cccCCCCCCEEEccCCcc
Q 038396          145 DLGNNQISDTFPS----WLGTIPNLNVLILRSNKF  175 (456)
Q Consensus       145 ~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l  175 (456)
                      ++++|.++ ..|.    .+..+++|+.|+++.|..
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            55555554 2233    255556666666655554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=1.7e-17  Score=143.81  Aligned_cols=136  Identities=24%  Similarity=0.290  Sum_probs=93.2

Q ss_pred             chhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCC
Q 038396           59 PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC  138 (456)
Q Consensus        59 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  138 (456)
                      |..+..+++|++|++++|.+++ +| .+..++ +|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             hHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence            3477777888888888887774 56 677776 7888888888777 456666666778888888887774 34 56777


Q ss_pred             CCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCcccccCCCC--------CCccCCCCccEEecccccCc
Q 038396          139 SKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEP--------RTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       139 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~~~l~~L~~L~ls~n~l~  202 (456)
                      ++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..        ..+..+++|+.||  ++.++
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            778888888887764322 35677778888888888776654321        0125567777776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.3e-14  Score=121.98  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396           69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  148 (456)
Q Consensus        69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  148 (456)
                      +++++++|.++ .+|..+.  . +|++|++++|.|++..|..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45566666665 4454332  2 566666666666655555566666666666666666655454555666666666666


Q ss_pred             CcCCcCCCccccCCCCCCEEEccCCccc
Q 038396          149 NQISDTFPSWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus       149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~  176 (456)
                      |.+++..+..|..+++|++|+|++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6665544445555556666666655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.55  E-value=2.7e-14  Score=120.49  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396           69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  148 (456)
Q Consensus        69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  148 (456)
                      +.+++++|.++ .+|..+.  . +|++|++++|.|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45666666665 5555432  2 566666666666655566666666666666666666654444456666666666666


Q ss_pred             CcCCcCCCccccCCCCCCEEEccCCccc
Q 038396          149 NQISDTFPSWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus       149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~  176 (456)
                      |.|++..+..|..+++|++|+|++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666444444566666666666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=3.7e-14  Score=119.23  Aligned_cols=105  Identities=24%  Similarity=0.253  Sum_probs=63.1

Q ss_pred             cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC
Q 038396           45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH  124 (456)
Q Consensus        45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  124 (456)
                      +.+++++|.++ .+|..+  .++|++|+|++|.+++..|..|..+. +|++|++++|+|++..+..|..+++|++|++++
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            44555555555 233333  24566666666666655455555665 566666666666655555566666666666666


Q ss_pred             CcCcccCCccccCCCCCcEEeCcCCcCCc
Q 038396          125 NLFQGRIPRSLVNCSKLEFLDLGNNQISD  153 (456)
Q Consensus       125 N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  153 (456)
                      |++++..+..|..+++|++|+|++|.++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66665555556666777777777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=4.9e-16  Score=134.47  Aligned_cols=153  Identities=19%  Similarity=0.163  Sum_probs=123.6

Q ss_pred             hhhhcCCCCCEEEccCCCCCCCCcCccCCCC------C---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCc
Q 038396            9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPV------P---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS   79 (456)
Q Consensus         9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~------~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   79 (456)
                      +..  ...++.++++.+.++      +.+|.      .   +++|+.|++++|.+++ +| .+..+++|++|++++|.++
T Consensus        14 ~~~--~~~l~~l~l~~~~l~------~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           14 FEE--RKSVVATEAEKVELH------GMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHH--TTCCCCTTCSEEECC------BCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             HHh--cccccCcchheeEec------cccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            445  678888888888775      23332      2   7899999999999996 66 8899999999999999998


Q ss_pred             cccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCC-ccccCCCCCcEEeCcCCcCCcCCCc-
Q 038396           80 GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPS-  157 (456)
Q Consensus        80 ~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~-  157 (456)
                       .+|..+..++ +|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|. 
T Consensus        84 -~l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           84 -KIENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             -SCSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             -cccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence             7788777777 89999999999986 44 58888999999999999985333 4788999999999999999866554 


Q ss_pred             ---------cccCCCCCCEEEccCCcccc
Q 038396          158 ---------WLGTIPNLNVLILRSNKFYG  177 (456)
Q Consensus       158 ---------~~~~l~~L~~L~L~~n~l~~  177 (456)
                               .+..+++|+.|+  +|.++.
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                     277899999887  666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=9.7e-14  Score=117.08  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=67.6

Q ss_pred             cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC
Q 038396           45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH  124 (456)
Q Consensus        45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  124 (456)
                      +.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..|..+. +|++|+|++|+|+++.+..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45566666655 3444332  5666666666666655566666666 677777777777655555566777777777777


Q ss_pred             CcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396          125 NLFQGRIPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus       125 N~l~~~~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      |++++..+..|..+++|++|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7777555555777777777777777776

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=1.3e-12  Score=125.66  Aligned_cols=311  Identities=10%  Similarity=0.043  Sum_probs=193.5

Q ss_pred             hhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh
Q 038396            8 WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG   87 (456)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   87 (456)
                      .|.+  |.+|+.+.+..+ ++   .+....+..+.+|+.+++.++ ++.+...+|.++..|+.+.+..+ ++.....+|.
T Consensus        66 AF~~--c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           66 AFQG--CRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             TTTT--CTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             HhhC--CCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence            4677  889999999754 54   233344445788999998755 66566778888889988877654 3324445565


Q ss_pred             hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCE
Q 038396           88 NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV  167 (456)
Q Consensus        88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  167 (456)
                      ...  +....... .+..+...+|.++.+|+.+.+..+... +....|.++.+|+.+++..+ ++.....+|.++..|+.
T Consensus       138 ~~~--~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          138 GCD--FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TCC--CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             ccc--ccccccCc-cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            553  33333322 223355667888888888888766433 66778888888888888766 44455567778888888


Q ss_pred             EEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccc
Q 038396          168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY  247 (456)
Q Consensus       168 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (456)
                      +.+..+... +....   .....|+.+.+... ++ .+....|..+..++.+.+..... ......+.....      ..
T Consensus       213 i~~~~~~~~-i~~~~---~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~------l~  279 (394)
T 4fs7_A          213 MEFPNSLYY-LGDFA---LSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSG------LK  279 (394)
T ss_dssp             CCCCTTCCE-ECTTT---TTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTT------CC
T ss_pred             eecCCCceE-eehhh---cccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcc-eeeccccccccc------cc
Confidence            777665432 11111   23456677666543 22 34445566666666655543221 000001100000      00


Q ss_pred             eeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccc
Q 038396          248 SLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG  327 (456)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  327 (456)
                      ................+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.
T Consensus       280 ~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~  356 (394)
T 4fs7_A          280 KVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK  356 (394)
T ss_dssp             EEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred             eeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence            0000000011111223567888888654 66667778899999999999754 76667788999999999999877 665


Q ss_pred             cCchhhhcCCCCCEEeccCC
Q 038396          328 QIPQQLVEFTFLEFFDVSDN  347 (456)
Q Consensus       328 ~~~~~l~~l~~L~~L~ls~N  347 (456)
                      .-..+|.++.+|+.+++..+
T Consensus       357 I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          357 IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTTTBTTCTTCCEEEEEGG
T ss_pred             ehHHHhhCCCCCCEEEECCC
Confidence            66678999999999998654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=1.5e-15  Score=144.32  Aligned_cols=165  Identities=17%  Similarity=0.116  Sum_probs=114.6

Q ss_pred             CCCCCEEEccCCCCCCC--CcCccCCCCCCCCCcEEEccCCccccccchhh-hcCCCCCeeecccCcCccccChhhhh--
Q 038396           14 MQYLNALNLSHNLLTSS--NNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTVKNLVLSHNNLSGVLPQCLGN--   88 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~--~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~--   88 (456)
                      +++|++|+|++|.|+..  ..+...+....++|+.|++++|.+++.....+ ..+++|++|+|++|.+++.....+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46799999999998721  11222222234689999999998875443333 34678899999999987544444432  


Q ss_pred             --CCCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCccc----CCccccCCCCCcEEeCcCCcCCcCC---
Q 038396           89 --FSDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDTF---  155 (456)
Q Consensus        89 --l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~---  155 (456)
                        ..++|++|+|++|.++..    ++..+..+++|++|+|++|.+++.    ++..+...++|++|+|++|.|++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              123799999999988743    344456788899999999988753    2456677788999999999887532   


Q ss_pred             -CccccCCCCCCEEEccCCccccc
Q 038396          156 -PSWLGTIPNLNVLILRSNKFYGI  178 (456)
Q Consensus       156 -~~~~~~l~~L~~L~L~~n~l~~~  178 (456)
                       +..+...++|++|+|++|.++..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence             33444668899999999988643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.41  E-value=1.2e-14  Score=138.06  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=115.3

Q ss_pred             CCCCcEEEccCCccccccchhhhcC-----CCCCeeecccCcCccccChhhhh-CCCCCcEEEccCCccceeCCccc---
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNL-----NTVKNLVLSHNNLSGVLPQCLGN-FSDELSVLDLQGNNFFGTIPDTF---  111 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~-l~~~L~~L~Ls~n~i~~~~~~~~---  111 (456)
                      .+.++.|++++|.++......+..+     ++|++|+|++|.+++.....+.. +. +|++|+|++|.++......+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHH
Confidence            4678899999999886555544433     68999999999987544444433 34 79999999999875433333   


Q ss_pred             --cCCCCccEEeccCCcCccc----CCccccCCCCCcEEeCcCCcCCcCC----CccccCCCCCCEEEccCCcccccCCC
Q 038396          112 --IKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDTF----PSWLGTIPNLNVLILRSNKFYGIIKE  181 (456)
Q Consensus       112 --~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~  181 (456)
                        ...++|++|+|++|.++..    ++..+..+++|++|+|++|.|++..    +..+...++|++|+|++|.++.....
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              2467899999999998752    3445577888999999999987532    45566778899999999988753211


Q ss_pred             CC--CccCCCCccEEecccccCc
Q 038396          182 PR--TDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       182 ~~--~~~~l~~L~~L~ls~n~l~  202 (456)
                      .+  .....++|++|++++|.++
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence            11  1134578999999999886

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=2.6e-12  Score=121.34  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             EEccCC-ccccccchhhhcCCCCCeeeccc-CcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC
Q 038396           47 YLVSNN-SLTGEIPSWICNLNTVKNLVLSH-NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH  124 (456)
Q Consensus        47 L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  124 (456)
                      ++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+. +|++|+|++|+|++..|..|.++++|++|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            455554 555 3444 55555555555553 555544444455554 555555555555555555555555555555555


Q ss_pred             CcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396          125 NLFQGRIPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus       125 N~l~~~~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      |++++..+..|..++ |+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            555544333343333 555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.8e-12  Score=122.46  Aligned_cols=90  Identities=18%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             cccccEEEccC-CCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396          264 PDILTGIILSS-NRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF  342 (456)
Q Consensus       264 ~~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  342 (456)
                      ..+|++|+|++ |.++++++..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34577777775 777777777777777777777777777777777777777777777777777755555555554 7777


Q ss_pred             eccCCcCcccCC
Q 038396          343 DVSDNYLTGAIP  354 (456)
Q Consensus       343 ~ls~N~l~~~~p  354 (456)
                      +|++|++.+.+.
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            777777776655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=4.1e-11  Score=115.09  Aligned_cols=303  Identities=12%  Similarity=0.070  Sum_probs=160.2

Q ss_pred             hhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh
Q 038396            8 WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG   87 (456)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   87 (456)
                      .|.+  |++|+.+++..+ ++   .+.......+..|+.+.+..+ +......+|.++..++......  +......+|.
T Consensus        89 aF~~--c~~L~~i~lp~~-l~---~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~  159 (394)
T 4fs7_A           89 AFEN--CSKLEIINIPDS-VK---MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFA  159 (394)
T ss_dssp             TTTT--CTTCCEECCCTT-CC---EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTT
T ss_pred             HhhC--CCCCcEEEeCCC-ce---EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhc
Confidence            5778  999999999865 44   122223333566666555433 3334445555554332222221  2213334555


Q ss_pred             hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCE
Q 038396           88 NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV  167 (456)
Q Consensus        88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  167 (456)
                      ++. +|+.+.+.++. ..+...+|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+...  +.+......+|+.
T Consensus       160 ~c~-~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~  234 (394)
T 4fs7_A          160 TCE-SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKN  234 (394)
T ss_dssp             TCT-TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCE
T ss_pred             ccC-CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCce
Confidence            665 67777766543 3355566666667777666655 44355556666666666665554332  1122223345555


Q ss_pred             EEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccc
Q 038396          168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY  247 (456)
Q Consensus       168 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (456)
                      +.+... ++.+....+  ..+..++.+.+..+..  .++...|..+..++.+......+..........       .  .
T Consensus       235 i~ip~~-~~~i~~~~f--~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~-------L--~  300 (394)
T 4fs7_A          235 IIIPDS-FTELGKSVF--YGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSS-------L--T  300 (394)
T ss_dssp             EEECTT-CCEECSSTT--TTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEECTTTTTTCTT-------C--C
T ss_pred             EEECCC-ceecccccc--cccccceeEEcCCCcc--eeeccccccccccceeccCceeecccccccccc-------c--c
Confidence            555432 222222222  4445555555544422  233333444444433332221110000000000       0  0


Q ss_pred             eeEeeccC--cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcc
Q 038396          248 SLIMNSKG--RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF  325 (456)
Q Consensus       248 ~~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  325 (456)
                      .+......  ........+.+|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ +
T Consensus       301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~  377 (394)
T 4fs7_A          301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-L  377 (394)
T ss_dssp             EEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-G
T ss_pred             ccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-C
Confidence            00000000  00111122567999999754 77777889999999999999877 77677889999999999999765 3


Q ss_pred             cccCchhhhcCCCCCEE
Q 038396          326 SGQIPQQLVEFTFLEFF  342 (456)
Q Consensus       326 ~~~~~~~l~~l~~L~~L  342 (456)
                      . .+...|.++++|+.+
T Consensus       378 ~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          378 E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             G-GGGGGBCTTCEEEEE
T ss_pred             E-EhhheecCCCCCcEE
Confidence            3 334668888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=2.6e-10  Score=109.41  Aligned_cols=198  Identities=8%  Similarity=0.075  Sum_probs=118.8

Q ss_pred             hhhhhcCC-CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCc---cccccchhhhcCCCCCeeecccCcCccccC
Q 038396            8 WLLDPSMQ-YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNS---LTGEIPSWICNLNTVKNLVLSHNNLSGVLP   83 (456)
Q Consensus         8 ~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   83 (456)
                      .|.+  ++ .|+.+.+..+ ++   .+...-+..+.+|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++....
T Consensus        58 aF~~--~~~~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           58 VFCN--YKYVLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             TTTT--CCSCCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             hccC--CCCcCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            4656  64 5888888754 44   2333334447888888887663   66556678888888888877654 443445


Q ss_pred             hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCC
Q 038396           84 QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP  163 (456)
Q Consensus        84 ~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  163 (456)
                      .+|..+. +|+.+.+..+ +..+...+|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+..+-.. ....+|..+.
T Consensus       131 ~aF~~c~-~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~  205 (394)
T 4gt6_A          131 EAFHHCE-ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECF  205 (394)
T ss_dssp             TTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred             hhhhhhc-ccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcc
Confidence            5666776 7888888654 34466677778888888888765 44344455543 45777766544322 3334455555


Q ss_pred             CCCEEEccCCc------------------------------------ccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396          164 NLNVLILRSNK------------------------------------FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS  207 (456)
Q Consensus       164 ~L~~L~L~~n~------------------------------------l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  207 (456)
                      +++......+.                                    +..+....  +..+..|+.+.+..+..  .+..
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~a--F~~c~~L~~i~lp~~~~--~I~~  281 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHA--FDSCAYLASVKMPDSVV--SIGT  281 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTT--TTTCSSCCEEECCTTCC--EECT
T ss_pred             ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccce--eeecccccEEecccccc--eecC
Confidence            55544332221                                    11122222  36778888888865533  4555


Q ss_pred             hhhhCccccccccc
Q 038396          208 KSFLCLDAMKIVNT  221 (456)
Q Consensus       208 ~~~~~l~~l~~l~l  221 (456)
                      ..|.++..|+.+.+
T Consensus       282 ~aF~~c~~L~~i~l  295 (394)
T 4gt6_A          282 GAFMNCPALQDIEF  295 (394)
T ss_dssp             TTTTTCTTCCEEEC
T ss_pred             cccccccccccccC
Confidence            56666666555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.22  E-value=2.7e-09  Score=102.29  Aligned_cols=288  Identities=11%  Similarity=0.088  Sum_probs=176.7

Q ss_pred             CCCcEEEccCCccccccchhhhcCCCCCeeecccCc---CccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCcc
Q 038396           42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNN---LSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG  118 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  118 (456)
                      ..|+.+.+..+ ++.+...+|.++.+|+.+.+..|.   ++..-..+|..+. +|+.+.+..+ ++.+...+|..+.+|+
T Consensus        64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~c~~L~  140 (394)
T 4gt6_A           64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHHCEELD  140 (394)
T ss_dssp             SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred             CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeeccCCc-cceehhhhhhhhcccc
Confidence            35888988754 776778899999999999998874   6645556787887 8998888765 5557778899999999


Q ss_pred             EEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccc
Q 038396          119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN  198 (456)
Q Consensus       119 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~  198 (456)
                      .+.+..+- ..+....|..+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+- ..+....+  ..+..+.......
T Consensus       141 ~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af--~~c~~l~~~~~~~  214 (394)
T 4gt6_A          141 TVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAF--SECFALSTITSDS  214 (394)
T ss_dssp             EEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTT--TTCTTCCEEEECC
T ss_pred             ccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchh--hhccccceecccc
Confidence            99998664 4477788999999999999876 44354556654 679999887653 33333344  5666777666554


Q ss_pred             ccCcCCCChhhhhCc-------------cccccccccCcccccccc-CCCCCccccccccccceeEeeccC--ccccccc
Q 038396          199 NRFTGKLPSKSFLCL-------------DAMKIVNTSQLRYLQDVI-SPYGQVSTDLISTYDYSLIMNSKG--RMMTYNK  262 (456)
Q Consensus       199 n~l~~~~~~~~~~~l-------------~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  262 (456)
                      +... .+....+...             ..+..+.+...  +.... ..+...    .  ....+......  .......
T Consensus       215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c----~--~L~~i~lp~~~~~I~~~aF~  285 (394)
T 4gt6_A          215 ESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSC----A--YLASVKMPDSVVSIGTGAFM  285 (394)
T ss_dssp             SSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTC----S--SCCEEECCTTCCEECTTTTT
T ss_pred             cccc-cccceeecccccccccccccccccccceEEcCCc--ceEcccceeeec----c--cccEEecccccceecCcccc
Confidence            4332 1111111100             00000000000  00000 000000    0  00000000000  0001112


Q ss_pred             ccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396          263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF  342 (456)
Q Consensus       263 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  342 (456)
                      .+..|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++..-..+|.++++|+.+
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            24567777775 4566666677888888888888754 65566677888888888888654 554445678888888888


Q ss_pred             eccCCcCc
Q 038396          343 DVSDNYLT  350 (456)
Q Consensus       343 ~ls~N~l~  350 (456)
                      ++.++...
T Consensus       363 ~~~~~~~~  370 (394)
T 4gt6_A          363 EYSGSRSQ  370 (394)
T ss_dssp             EESSCHHH
T ss_pred             EECCceee
Confidence            88877543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=2.6e-10  Score=107.26  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             cccccEEEccCCCCCccCchhhh---ccCCCCeEeCCCcccccc----CCccccCCCCCCeeeCCCCcccccCchhhhc-
Q 038396          264 PDILTGIILSSNRFDRVIPTSIA---NLKGLQVLNLDNNNLQGH----IPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-  335 (456)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-  335 (456)
                      +++|+.|+|.+|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.|+......+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            34567777766666543222222   356777777777777643    2233345567777777777766443333332 


Q ss_pred             CCCCCEEeccCCc
Q 038396          336 FTFLEFFDVSDNY  348 (456)
Q Consensus       336 l~~L~~L~ls~N~  348 (456)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3446666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.98  E-value=4.1e-10  Score=105.89  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=90.4

Q ss_pred             ccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCcccc--CCCCCCEEEccC--CcccccC-----CC
Q 038396          111 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG--TIPNLNVLILRS--NKFYGII-----KE  181 (456)
Q Consensus       111 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-----~~  181 (456)
                      +..+++|+.|++++|.-. .++. +. +++|++|++..+.++......+.  .+++|+.|+|+.  |...+..     ..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            344566666666665211 1222 22 56677777776666533222332  567777777642  1111110     00


Q ss_pred             CCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccc
Q 038396          182 PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYN  261 (456)
Q Consensus       182 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (456)
                      .+....+++|++|++.+|.+.+..+...+.                                                 .
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-------------------------------------------------a  275 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-------------------------------------------------S  275 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHH-------------------------------------------------C
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHh-------------------------------------------------C
Confidence            111134678888888887775221111000                                                 0


Q ss_pred             cccccccEEEccCCCCCccC----chhhhccCCCCeEeCCCccccccCCccccC-CCCCCeeeCCCCc
Q 038396          262 KIPDILTGIILSSNRFDRVI----PTSIANLKGLQVLNLDNNNLQGHIPSCLGN-LTNLESLDLSNNR  324 (456)
Q Consensus       262 ~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~N~  324 (456)
                      ..++.|++|+|+.|.+.+..    +..+..+++|+.|+|++|.+++.....+.. +  ...++++.++
T Consensus       276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            01456899999999887642    334466799999999999988655454543 2  4668898887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=1.5e-07  Score=89.62  Aligned_cols=291  Identities=11%  Similarity=0.065  Sum_probs=180.0

Q ss_pred             hhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh
Q 038396            8 WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG   87 (456)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   87 (456)
                      ++..  ..+|+.+.+... ++   .+...-+..+.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ ++..-..+|.
T Consensus        41 ~~~~--~~~i~~v~ip~~-vt---~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~  111 (379)
T 4h09_A           41 WYKD--RDRISEVRVNSG-IT---SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ  111 (379)
T ss_dssp             TGGG--GGGCSEEEECTT-EE---EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred             cccc--ccCCEEEEeCCC-cc---ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec
Confidence            4555  678999988753 44   233334445889999999754 776667788887 6888877644 5523334454


Q ss_pred             hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc------------CC
Q 038396           88 NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD------------TF  155 (456)
Q Consensus        88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~------------~~  155 (456)
                      . . +|+.+.+..+ ++.+...+|.. .+++.+.+..+ ++......|..+.+++...+..+....            ..
T Consensus       112 ~-~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (379)
T 4h09_A          112 G-T-DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI  186 (379)
T ss_dssp             T-C-CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred             c-C-CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccce
Confidence            3 4 7999999866 33355556655 36777766654 444666778888888888776544321            11


Q ss_pred             CccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCC
Q 038396          156 PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG  235 (456)
Q Consensus       156 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~  235 (456)
                      ...+.....+..+.+.... .......+  .....|+.+.+..+ +. .++...|..+..|+.+.+...-  ..+..   
T Consensus       187 ~~~~~~~~~~~~~~~~~~~-~~i~~~~f--~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v--~~I~~---  256 (379)
T 4h09_A          187 LESYPAAKTGTEFTIPSTV-KTVTAYGF--SYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNV--TSIGS---  256 (379)
T ss_dssp             EEECCTTCCCSEEECCTTC-CEECTTTT--TTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTC--CEECT---
T ss_pred             eccccccccccccccccce-eEEeeccc--ccccccceeeeccc-ee-EEccccccCCccceEEEcCCCc--cEeCc---
Confidence            1233344455555554332 22222223  55667777777544 33 4555667777777666654321  00000   


Q ss_pred             CccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCC
Q 038396          236 QVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL  315 (456)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  315 (456)
                                             .....+..|+.+.+.. .+..+....|.++.+|+.+.+.++.++.+...+|.++.+|
T Consensus       257 -----------------------~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          257 -----------------------FLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             -----------------------TTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             -----------------------cccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence                                   0011134567777754 3555566678888889999988888886777888888899


Q ss_pred             CeeeCCCCcccccCchhhhcCCCCCEEeccCC
Q 038396          316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN  347 (456)
Q Consensus       316 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N  347 (456)
                      +.+.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            99988755 55455567888888888877544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.95  E-value=1.8e-07  Score=89.08  Aligned_cols=266  Identities=9%  Similarity=-0.005  Sum_probs=173.2

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      ..+++.+.+.. .++.+...+|.++.+|+.+++..+ ++..-..+|.++  +|+.+.+..+ ++.+...+|.. .+|+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~~-l~~I~~~aF~~-~~L~~i  118 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT--KLQSYTGMER-VKKFGDYVFQG-TDLDDF  118 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC--CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC--CCceEECCce-eeEeccceecc-CCcccc
Confidence            45688888864 467677789999999999999754 664555666665  5888888754 55566667765 489999


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCC----------CccCCCC
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR----------TDCRFSK  190 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------~~~~l~~  190 (456)
                      .+..+- ......+|.++ +|+.+.+..+ ++.....+|..+.+++...+..+..........          .+.....
T Consensus       119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
T 4h09_A          119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT  195 (379)
T ss_dssp             ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred             cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence            998763 43555666665 5776666544 344556677888888888876654322111100          0122334


Q ss_pred             ccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEE
Q 038396          191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI  270 (456)
Q Consensus       191 L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  270 (456)
                      +..+.+.....  .+....+.....++.+.+...-.  ....                          .....+..|+.+
T Consensus       196 ~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~~--~i~~--------------------------~~f~~~~~L~~i  245 (379)
T 4h09_A          196 GTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGVT--TLGD--------------------------GAFYGMKALDEI  245 (379)
T ss_dssp             CSEEECCTTCC--EECTTTTTTCSSCSEEECCTTCC--EECT--------------------------TTTTTCSSCCEE
T ss_pred             cccccccccee--EEeecccccccccceeeecccee--EEcc--------------------------ccccCCccceEE
Confidence            44444433221  22334455555555554433110  0000                          001114568888


Q ss_pred             EccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCC
Q 038396          271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN  347 (456)
Q Consensus       271 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N  347 (456)
                      .+..+ ++.+....|.++.+|+.+.+..+ ++.....+|.++++|+.+.+.++.++..-...|.++.+|+.+++..+
T Consensus       246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             EcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            88765 66666778899999999999755 66566778999999999999999888666788999999999999755

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=2.4e-09  Score=90.94  Aligned_cols=117  Identities=11%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             cchhhhcCCCCCeeecccC-cCccc----cChhhhhCCCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCc
Q 038396           58 IPSWICNLNTVKNLVLSHN-NLSGV----LPQCLGNFSDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQ  128 (456)
Q Consensus        58 ~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~  128 (456)
                      +...+...+.|++|+|++| .+.+.    +...+.... +|++|+|++|.|...    +...+...++|++|+|++|.++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3445556677777777777 66532    223333344 677777777776532    2233344456666666666665


Q ss_pred             cc----CCccccCCCCCcEEeC--cCCcCCcCC----CccccCCCCCCEEEccCCcc
Q 038396          129 GR----IPRSLVNCSKLEFLDL--GNNQISDTF----PSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus       129 ~~----~~~~l~~l~~L~~L~L--s~n~i~~~~----~~~~~~l~~L~~L~L~~n~l  175 (456)
                      ..    +...+...++|++|+|  ++|.|+...    ...+...++|++|++++|.+
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            42    2344555566666666  556665321    12233344555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=6.7e-09  Score=88.13  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=79.3

Q ss_pred             CCCCcEEEccCC-ccccc----cchhhhcCCCCCeeecccCcCccc----cChhhhhCCCCCcEEEccCCcccee----C
Q 038396           41 PPETILYLVSNN-SLTGE----IPSWICNLNTVKNLVLSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFFGT----I  107 (456)
Q Consensus        41 ~~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~----~  107 (456)
                      .+.|++|+|++| .+...    +...+...++|++|+|++|.+.+.    +...+.... .|++|+|++|.|+..    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHH
Confidence            566777777777 77642    334556678888888888888643    334444455 788888888888753    3


Q ss_pred             CccccCCCCccEEec--cCCcCccc----CCccccCCCCCcEEeCcCCcCC
Q 038396          108 PDTFIKESRLGVIDL--SHNLFQGR----IPRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus       108 ~~~~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      ...+...++|++|++  ++|.++..    +...+...++|++|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            456667788999999  78888753    3345666788999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.58  E-value=1.3e-08  Score=90.73  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             CCCccEEeccCCcCcc--cCCccccCCCCCcEEeCcCCcCCcCCCccccCCC--CCCEEEccCCcccc
Q 038396          114 ESRLGVIDLSHNLFQG--RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP--NLNVLILRSNKFYG  177 (456)
Q Consensus       114 l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~  177 (456)
                      +++|+.|+|++|++++  .++..+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            4445555555555543  2223334455555555555555432  1222222  55555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.56  E-value=4.2e-08  Score=87.48  Aligned_cols=104  Identities=26%  Similarity=0.300  Sum_probs=67.9

Q ss_pred             hhcCCCCCe--eecccCcCccccCh----hhhhCCCCCcEEEccCCcccee--CCccccCCCCccEEeccCCcCcccCCc
Q 038396           62 ICNLNTVKN--LVLSHNNLSGVLPQ----CLGNFSDELSVLDLQGNNFFGT--IPDTFIKESRLGVIDLSHNLFQGRIPR  133 (456)
Q Consensus        62 ~~~l~~L~~--L~Ls~n~l~~~~~~----~~~~l~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~  133 (456)
                      |...+.|+.  ++++.|... .++.    ....++ +|+.|+|++|.|++.  +|..+..+++|+.|+|++|++++.  .
T Consensus       137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~  212 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R  212 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G
T ss_pred             cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h
Confidence            444444544  666777443 2222    223455 788888888888863  345666788888888888888754  2


Q ss_pred             cccCCC--CCcEEeCcCCcCCcCCCc-------cccCCCCCCEEE
Q 038396          134 SLVNCS--KLEFLDLGNNQISDTFPS-------WLGTIPNLNVLI  169 (456)
Q Consensus       134 ~l~~l~--~L~~L~Ls~n~i~~~~~~-------~~~~l~~L~~L~  169 (456)
                      .+..+.  +|++|+|++|.+.+..|+       .+..+++|+.|+
T Consensus       213 ~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          213 ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            333343  888888888888765552       356788888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=2.5e-07  Score=76.53  Aligned_cols=84  Identities=12%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             ccccEEEccCCCCCccCchhhhccCCCCeEeCCCcc-ccccCCccccCC----CCCCeeeCCCC-cccccCchhhhcCCC
Q 038396          265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNL----TNLESLDLSNN-RFSGQIPQQLVEFTF  338 (456)
Q Consensus       265 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~Ls~N-~l~~~~~~~l~~l~~  338 (456)
                      ..|++||++++.++..--..+..+++|+.|+|++|. +++..-..+..+    ++|++|+|++| +|+..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            359999999999988766778899999999999995 886655666664    47999999998 488655566788999


Q ss_pred             CCEEeccCCc
Q 038396          339 LEFFDVSDNY  348 (456)
Q Consensus       339 L~~L~ls~N~  348 (456)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=3.3e-07  Score=75.76  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=37.2

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCc-CcccCCccccCC----CCCcEEeCcCCc-CCcCCCccccCCCCC
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL-FQGRIPRSLVNC----SKLEFLDLGNNQ-ISDTFPSWLGTIPNL  165 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~Ls~n~-i~~~~~~~~~~l~~L  165 (456)
                      .|++||+++|.|+..--..+.++++|++|+|++|. +++..-..+..+    ++|++|++++|. |++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            35555555555544333334455555555555553 443222223332    245555555543 443322333444555


Q ss_pred             CEEEccCC
Q 038396          166 NVLILRSN  173 (456)
Q Consensus       166 ~~L~L~~n  173 (456)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.79  E-value=1.6e-05  Score=66.90  Aligned_cols=115  Identities=10%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             hhhhcCCCCCeeecccC-cCccc----cChhhhhCCCCCcEEEccCCccceeC----CccccCCCCccEEeccCCcCccc
Q 038396           60 SWICNLNTVKNLVLSHN-NLSGV----LPQCLGNFSDELSVLDLQGNNFFGTI----PDTFIKESRLGVIDLSHNLFQGR  130 (456)
Q Consensus        60 ~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~  130 (456)
                      ..+.+-+.|++|+|++| .|.+.    +..++..-. .|+.|+|++|.|....    ...+..-+.|++|+|+.|.|+..
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            34445567788888774 66532    233444444 6888888888776432    23334557788888888887742


Q ss_pred             ----CCccccCCCCCcEEeCcCC---cCCcC----CCccccCCCCCCEEEccCCcc
Q 038396          131 ----IPRSLVNCSKLEFLDLGNN---QISDT----FPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus       131 ----~~~~l~~l~~L~~L~Ls~n---~i~~~----~~~~~~~l~~L~~L~L~~n~l  175 (456)
                          +.+++..-+.|++|+|++|   .+...    +...+..-+.|+.|+++.|.+
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                3345556677888888765   33321    223445567788888876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.73  E-value=1e-05  Score=68.11  Aligned_cols=110  Identities=6%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             CCcEEEccCC-cccee----CCccccCCCCccEEeccCCcCcccC----CccccCCCCCcEEeCcCCcCCcCC----Ccc
Q 038396           92 ELSVLDLQGN-NFFGT----IPDTFIKESRLGVIDLSHNLFQGRI----PRSLVNCSKLEFLDLGNNQISDTF----PSW  158 (456)
Q Consensus        92 ~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~n~i~~~~----~~~  158 (456)
                      .|++|+|++| .|...    +..++..-+.|+.|+|++|++....    ...+..-+.|++|+|++|.|.+.-    .++
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            6777777774 66532    3344555677777888877776432    233445577777888877776432    234


Q ss_pred             ccCCCCCCEEEccCCcc---cccCCC--CCCccCCCCccEEecccccC
Q 038396          159 LGTIPNLNVLILRSNKF---YGIIKE--PRTDCRFSKLHIIDLSNNRF  201 (456)
Q Consensus       159 ~~~l~~L~~L~L~~n~l---~~~~~~--~~~~~~l~~L~~L~ls~n~l  201 (456)
                      +..-+.|++|+|++|..   ......  .-....-+.|+.|+++.|.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            44556677777775432   211000  00113345677777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.60  E-value=0.00012  Score=57.58  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             eEeCCCcccc-ccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396          293 VLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       293 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.+.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            5666666665 23444332  357778888888776556667777888888888888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.12  E-value=0.00056  Score=53.67  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=17.1

Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCcC
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF  127 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  127 (456)
                      +|++|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555444444444444444444444443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=90.30  E-value=0.13  Score=30.87  Aligned_cols=10  Identities=50%  Similarity=0.777  Sum_probs=3.9

Q ss_pred             hhhhhHHHHH
Q 038396          416 AGGLVTGLVL  425 (456)
Q Consensus       416 ~~~~~~~~~~  425 (456)
                      +++++.++++
T Consensus        14 A~gVVgGv~~   23 (44)
T 2ks1_B           14 ATGMVGALLL   23 (44)
T ss_dssp             THHHHHHHHH
T ss_pred             EeehhHHHHH
Confidence            3444333333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=90.05  E-value=0.14  Score=30.67  Aligned_cols=15  Identities=27%  Similarity=0.425  Sum_probs=6.3

Q ss_pred             hhhhhhHHHHHHHHH
Q 038396          415 YAGGLVTGLVLGFNF  429 (456)
Q Consensus       415 ~~~~~~~~~~~~~~~  429 (456)
                      ++++++.++++++++
T Consensus        12 IA~gVVgGv~~v~ii   26 (44)
T 2l2t_A           12 IAAGVIGGLFILVIV   26 (44)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHHHH
Confidence            344444444443333

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=80.59  E-value=0.82  Score=27.44  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=12.8

Q ss_pred             eeeehhhhhhhHHHHHHHHH
Q 038396          410 IILIGYAGGLVTGLVLGFNF  429 (456)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~  429 (456)
                      .++.++++|+++.+++++.+
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~   31 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGI   31 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHH
T ss_pred             eEEeehhHHHHHHHHHHHHH
Confidence            36677777776666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.0 bits (219), Expect = 2e-20
 Identities = 71/324 (21%), Positives = 105/324 (32%), Gaps = 61/324 (18%)

Query: 63  CNLNT----VKNLVLSHNNLSGV--LPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESR 116
           C+ +T    V NL LS  NL     +P  L N      +     NN  G IP    K ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
           L  + ++H    G IP  L     L  LD   N +S T P  + ++PNL  +    N+  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236
           G I +           +    N                                ++    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNR-------------------------------LTGKIP 191

Query: 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNL 296
            +   ++     L  N      +     D  T  I  +          +   K L  L+L
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 297 DNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356
            NN + G +P  L  L  L SL++S N   G+IPQ                        G
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------------G 287

Query: 357 KQFATFDNTSFDGNSGLCGRPLSK 380
                FD +++  N  LCG PL  
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.3 bits (204), Expect = 2e-18
 Identities = 61/284 (21%), Positives = 94/284 (33%), Gaps = 34/284 (11%)

Query: 49  VSNNSLTG--EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT 106
           +S  +L     IPS + NL  +  L +                           NN  G 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGI------------------------NNLVGP 92

Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
           IP    K ++L  + ++H    G IP  L     L  LD   N +S T P  + ++PNL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226
            +    N+  G I +           +    N            +      +        
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------KIPPTFANLNLAFVDLS 205

Query: 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA 286
              +      +     +T    L  NS    +    +   L G+ L +NR    +P  + 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIP 330
            LK L  LN+  NNL G IP   GNL   +    +NN+     P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 41  PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQG 100
                   + NN + G +P  +  L  + +L +S NNL G +PQ  GN      V     
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ-RFDVSAYAN 300

Query: 101 NNFFGTIP 108
           N      P
Sbjct: 301 NKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 22/211 (10%)

Query: 137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDL 196
             + LE L   NNQISD  P  +  + NL+ L L  N+    +K+  T    + L  +DL
Sbjct: 195 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQ----LKDIGTLASLTNLTDLDL 248

Query: 197 SNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR 256
           +NN+ +   P      L  +K+                       ++      +  ++  
Sbjct: 249 ANNQISNLAPLSGLTKLTELKLGA----------NQISNISPLAGLTALTNLELNENQLE 298

Query: 257 MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 316
            ++       LT + L  N    + P  +++L  LQ L   NN +     S L NLTN+ 
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354

Query: 317 SLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
            L   +N+ S   P  L   T +    ++D 
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 5e-13
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 34/207 (16%)

Query: 14  MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTVKNLV 72
           +  L  L    +L+ ++N +    P+     +  L ++ N L       + +L  + +L 
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 73  LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESR---------------- 116
           L++N +S + P        +L+ L L  N      P   +                    
Sbjct: 248 LANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 117 ----LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS 172
               L  + L  N      P  + + +KL+ L   NN++SD   S L  + N+N L    
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 173 NKFYGIIKEPRTDCRFSKLHIIDLSNN 199
           N+   +          +++  + L++ 
Sbjct: 361 NQISDLTP----LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 3e-11
 Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 36/192 (18%)

Query: 1   IHGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 60
           I    P  +    +  L+ L+L+ N L     L               ++NN ++   P 
Sbjct: 209 ISDITPLGI----LTNLDELSLNGNQLKDIGTLASL-----TNLTDLDLANNQISNLAP- 258

Query: 61  WICNLNTVKNLVLSHNNLSGVLP-------------------QCLGNFSDELSVLDLQGN 101
            +  L  +  L L  N +S + P                       +    L+ L L  N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161
           N     P      ++L  +  ++N        SL N + + +L  G+NQISD  P  L  
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 162 IPNLNVLILRSN 173
           +  +  L L   
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 17/230 (7%)

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
            +   + L  ++  NNQ++D  P  L  +  L  +++ +N+   I               
Sbjct: 61  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 194 IDLSNNRFTGKLPSKSF--------LCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245
            +   +    K  +           +   +     TS  +          +   +L +  
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHI 305
              +  N    +    K+ ++ + +I ++N+   + P  I     L  L+L+ N L+   
Sbjct: 179 RLDISSNKVSDISVLAKLTNLES-LIATNNQISDITPLGIL--TNLDELSLNGNQLKD-- 233

Query: 306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL 355
              L +LTNL  LDL+NN+ S   P  L   T L    +  N ++   PL
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIP 330
           L        +  S  +L  +  L  D   ++      +  L NL  ++ SNN+ +   P
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP 83

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 5e-15
 Identities = 44/293 (15%), Positives = 82/293 (27%), Gaps = 21/293 (7%)

Query: 36  PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95
           P  +PP   +L L  NN +T        NL  +  L+L +N +S + P        +L  
Sbjct: 26  PKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLER 83

Query: 96  LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 155
           L L  N               L V +      +  +   L     +E L     + S   
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIE 142

Query: 156 PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDA 215
                 +  L+ + +       I            L  + L  N+ T    +      + 
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 216 MKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSN 275
            K+  +       D  S         +   +  L+    G           +  + L +N
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-----IQVVYLHNN 252

Query: 276 RFDRVIPTS------IANLKGLQVLNLDNNNLQGH--IPSCLGNLTNLESLDL 320
               +                   ++L +N +Q     PS    +    ++ L
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 49/291 (16%), Positives = 89/291 (30%), Gaps = 42/291 (14%)

Query: 63  CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122
           C+L  V+    S   L  V      +   + ++LDLQ N         F     L  + L
Sbjct: 10  CHLRVVQ---CSDLGLEKVPK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 62

Query: 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW---------------------LGT 161
            +N      P +     KLE L L  NQ+ +                             
Sbjct: 63  INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221
           +  + V+ L +N       E        KL  I +++   T  +P      L  + +   
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN 181

Query: 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281
              +     +     ++   +S    S + N       + +   +       +N     +
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL-------NNNKLVKV 234

Query: 282 PTSIANLKGLQVLNLDNNNLQG------HIPSCLGNLTNLESLDLSNNRFS 326
           P  +A+ K +QV+ L NNN+          P       +   + L +N   
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 10/231 (4%)

Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
              LDL NN+I++        + NL+ LIL +NK   I   P       KL  + LS N+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQ 90

Query: 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY 260
               LP K    L  +++      +  + V +   Q+    + T          G     
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 261 NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 320
            K    L+ I ++      +          L  L+LD N +     + L  L NL  L L
Sbjct: 150 KK----LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNS 371
           S N  S      L     L    +++N L                    N+
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 20/91 (21%), Positives = 32/91 (35%)

Query: 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322
           +P     + L +N+   +      NLK L  L L NN +    P     L  LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI 353
           N+      +       L   +     +  ++
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 36/226 (15%)

Query: 26  LLTSSNNLQGPLPVPPPETILYLVSNNSLT--------------------------GEIP 59
           L  S N L+      P       V  N +T                          G   
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 60  SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV 119
                +  +  + ++  N++ +      +    L+ L L GN        +    + L  
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPPS----LTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           + LS N        SL N   L  L L NN++    P  L     + V+ L +N    I 
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 180 KE----PRTDCRFSKLHIIDLSNNRFT-GKLPSKSFLCLDAMKIVN 220
                 P  + + +    + L +N     ++   +F C+     V 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 274 SNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333
           S+     +P  +       +L+L NN +         NL NL +L L NN+ S   P   
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 334 VEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLS 379
                LE   +S N L        +         +  + +     +
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 37/302 (12%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
               L   +P  I      + + L  N +S V         +   +              
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
                    +    +   +   P +     +L  L L    + +  P     +  L  L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD 229
           L+ N    +     T      L  + L  NR +  +P ++F  L ++             
Sbjct: 136 LQDNALQALP--DDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDR----------- 181

Query: 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLK 289
                      L       +  ++   +     +          +N    +   ++A L+
Sbjct: 182 ---------LLLHQNRVAHVHPHAFRDLGRLMTLYL-------FANNLSALPTEALAPLR 225

Query: 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349
            LQ L L++N       +       L+    S++     +PQ+L      +   ++ N L
Sbjct: 226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDL 281

Query: 350 TG 351
            G
Sbjct: 282 QG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 5e-12
 Identities = 44/300 (14%), Positives = 80/300 (26%), Gaps = 36/300 (12%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87
               LQ  P+ +P     ++L   N ++    +       +  L L  N L+ +      
Sbjct: 19  PQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 88  NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 147
             +    +            P TF    RL  + L     Q   P      + L++L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS 207
           +N +          + NL  L L  N+   + +          L  + L  NR     P 
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 208 KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDIL 267
            +F  L  +  +                                               L
Sbjct: 196 -AFRDLGRLMTLYLFANNLSA---------------------------LPTEALAPLRAL 227

Query: 268 TGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG 327
             + L+ N +      +      LQ     ++ +   +P     L   +   L+ N   G
Sbjct: 228 QYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 34/206 (16%), Positives = 59/206 (28%), Gaps = 13/206 (6%)

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           ++         +P  L        L L  N +     + L     L  L L   +     
Sbjct: 15  VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--- 68

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
            + + D     L  +DLS+N+          L    +  V+ ++L  L            
Sbjct: 69  -KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
           +L    +    +       T       L     ++N    +    +  L+ L  L L  N
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSL-----ANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRF 325
           +L   IP        L    L  N +
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 13/211 (6%)

Query: 137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDL 196
             +    ++     ++   P  L    +  +L L  N  Y       T   +++L  ++L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFS--LATLMPYTRLTQLNL 62

Query: 197 SNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR 256
                T      +   L  + + +           +       D+      SL + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 257 MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 316
           +    ++           N    + P  +     L+ L+L NNNL       L  L NL+
Sbjct: 123 LGELQELYLK-------GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 317 SLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
           +L L  N     IP+       L F  +  N
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 44/194 (22%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 29  SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCL- 86
              NL   P  +P   TIL+L S N L     + +     +  L L    L+ +      
Sbjct: 18  DKRNLTALPPDLPKDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 87  -------------------GNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127
                              G     L+VLD+  N               L  + L  N  
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCR 187
           +   P  L    KLE L L NN +++     L  + NL+ L+L+ N  Y I   P+    
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFG 193

Query: 188 FSKLHIIDLSNNRF 201
              L    L  N +
Sbjct: 194 SHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 284 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD 343
            ++ +     +N D  NL   +P  L    +   L LS N         L+ +T L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 344 VSDNY 348
           +    
Sbjct: 62  LDRAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 9e-10
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 13/269 (4%)

Query: 71  LVLSHNNLSGVLPQCLGN-FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 129
           L L+  NL    P   G   S  +       +     + + F    R+  +DLS+++ + 
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 130 R-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188
             +   L  CSKL+ L L   ++SD   + L    NL  L L     +            
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPY---GQVSTDLISTY 245
           S+L  ++LS      +   +  +   +  I   +   Y +++              +   
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 246 DYSLIMNSKGRMMTYNKIPDILTGIILSS-NRFDRVIPTSIANLKGLQVLNLDNNNLQGH 304
           D S  +  K          + L  + LS            +  +  L+ L +      G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 305 IPSCLGNLTNLESLDLSNNRFSGQIPQQL 333
           +      L +   L ++ + F+      +
Sbjct: 241 LQLLKEALPH---LQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
           L+       +   + +  G+       + +   +     +   ++ +DLSN+        
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 332 QLVE-FTFLEFFDVSDNYLTGAIP 354
            ++   + L+   +    L+  I 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIV 88

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 53/330 (16%), Positives = 99/330 (30%), Gaps = 23/330 (6%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTVKNLVLSH 75
            + L L++  L+S       LP  PP    L   S NSLT E+P    +L ++     + 
Sbjct: 40  AHELELNNLGLSS-------LPELPPHLESLVA-SCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 76  NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 135
             LS + P           +  L        +    +  + L  +       +     + 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195
                 E  +L          + L  +P+L + +        I++E         L  I 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 196 LSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM---- 251
             NN           L    ++    + L  L   ++             +    +    
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 311
            S   + +   +P  L  + +S+N+    +P     L   + L    N+L   +P    N
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRL---ERLIASFNHLA-EVPELPQN 325

Query: 312 LTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341
           L   + L +  N    + P        L  
Sbjct: 326 L---KQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 50/321 (15%), Positives = 83/321 (25%), Gaps = 49/321 (15%)

Query: 63  CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122
           C       L L++  LS  LP+   +    L  L    N+    +P+       L  + +
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH----LESLVASCNS-LTELPELP---QSLKSLLV 85

Query: 123 SHN------------------------------LFQGRIPRSLVNCSKLEFLDLGNNQIS 152
            +N                                  +I     N  K       + +  
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 153 DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLC 212
               + L  +P L  L   +  +       +       L  I   NN        ++   
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 213 LDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL--IMNSKGRMMTYNKIPDILTGI 270
           L  +   N           S       D   T    L   +               L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIP 330
           +   N     I +       L+ LN+ NN L   +P+       LE L  S N  + ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP 320

Query: 331 QQLVEFTFLEFFDVSDNYLTG 351
           +       L+   V  N L  
Sbjct: 321 ELP---QNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348
           +    L L+N  L   +P    +L   ESL  S N  + ++P+       L+   V +N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89

Query: 349 LTGAIPLGKQFATFDNTSFDGNSGLCGRPL 378
           L     L         ++         +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNS 119

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 14  MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVL 73
              L  LN+S+N L     L   L        L   S N L  E+P    NL   K L +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRL------ERLIA-SFNHLA-EVPELPQNL---KQLHV 331

Query: 74  SHNNLSGV--LPQCLGN 88
            +N L     +P+ + +
Sbjct: 332 EYNPLREFPDIPESVED 348

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 22/231 (9%), Positives = 58/231 (25%), Gaps = 5/231 (2%)

Query: 94  SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153
            V   Q +     IP           +       +     +      LE +++  N + +
Sbjct: 11  RVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 154 TFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213
              + + +       I        +   P        L  + +SN              L
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILS 273
             + +     +       + +  +S + +  +        +           +    +  
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLN--KNGIQEIHNCAFNGTQLDELNLSD 185

Query: 274 SNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 324
           +N  + +         G  +L++    +       L NL  L +    N +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 3e-06
 Identities = 24/215 (11%), Positives = 50/215 (23%), Gaps = 4/215 (1%)

Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK 190
           IP  L        L     ++            +L  + +  N    +I+          
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLI 250
             I     N       +                   ++ +   +   S   +       I
Sbjct: 81  HEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 251 MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 310
                   ++  +      + L+ N    +   +    +  ++   DNNNL+        
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 311 NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS 345
             +    LD+S  R        L     L      
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 3e-08
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 267 LTGIILSSNRF-DRVIPTSIANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLS 321
           +  + +      D      +  L+  QV+ LD+  L       I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 322 NNRFSGQIPQQLVE 335
           +N         +++
Sbjct: 64  SNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 287 NLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF-----T 337
               L+VL L + ++       + + L    +L  LDLSNN        QLVE       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 338 FLEFFDVSDNYLTGAIP 354
            LE   + D Y +  + 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 257 MMTYNKIPDILTGIILSSNRFD----RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG-- 310
                +   +L  + L+           +  ++     L+ L+L NN L       L   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 311 ---NLTNLESLDLSNNRFSGQIPQQL 333
                  LE L L +  +S ++  +L
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 13/89 (14%)

Query: 93  LSVLDLQGNNF----FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV-----NCSKLEF 143
           L VL L   +       ++  T +    L  +DLS+N         LV         LE 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 144 LDLGNNQISDTFPSWLGTI----PNLNVL 168
           L L +   S+     L  +    P+L V+
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 291 LQVLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRFSGQ----IPQQLVEFTFLEFFDVS 345
           +Q L++    L        L  L   + + L +   +      I   L     L   ++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 346 DNYLTGAIP 354
            N L     
Sbjct: 64  SNELGDVGV 72

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 7e-05
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 90  SDELSVLDLQGNNFFGTIPDTFIKE-SRLGVIDLSHNLFQGR----IPRSLVNCSKLEFL 144
           S ++  LD+Q            +    +  V+ L            I  +L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 145 DLGNNQISDTFPSWLGTIPNLNVLILRS 172
           +L +N++ D     +          ++ 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQK 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 7/78 (8%)

Query: 137 NCSKLEFLDLGNNQISDT----FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDC---RFS 189
             S L  L L +  +SD+      + L    +L  L L +N           +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 190 KLHIIDLSNNRFTGKLPS 207
            L  + L +  ++ ++  
Sbjct: 427 LLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 9e-04
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 17  LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGE----IPSWICNLNTVKNLV 72
           + +L++    L S       LP+     ++ L  +  LT      I S +     +  L 
Sbjct: 4   IQSLDIQCEEL-SDARWAELLPLLQQCQVVRL-DDCGLTEARCKDISSALRVNPALAELN 61

Query: 73  LSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFF 104
           L  N L  V    + Q L   S ++  L LQ     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 141 LEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKF--YGIIKEPRTDCRFSKLHIIDLS 197
           ++ LD+   ++SD  +   L  +    V+ L                      L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 198 NNRFTGK 204
           +N     
Sbjct: 64  SNELGDV 70

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 45  ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFF 104
           +L+L ++  LT  +   +  L  V +L LSHN L  + P      +    +  LQ ++  
Sbjct: 2   VLHL-AHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 105 GTIPDTFIKESRLGVIDLSHN-LFQGRIPRSLVNCSKLEFLDLGNNQIS---DTFPSWLG 160
               D      RL  + L +N L Q    + LV+C +L  L+L  N +            
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 161 TIPNLNVLI 169
            +P+++ ++
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 95  VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 154
           VL L   +   T+     +   +  +DLSHN  +   P +L     LE L   +N + + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 155 FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL 211
                  +P L  L+L +N+        +      +L +++L  N    +   +  L
Sbjct: 59  DGVA--NLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 69  KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128
           + L L+H +L+ +    L      ++ LDL  N      P        L V+  S     
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLL-LVTHLDLSHNRLRALPP-ALAALRCLEVLQASD--NA 54

Query: 129 GRIPRSLVNCSKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEP 182
                 + N  +L+ L L NN++  +     L + P L +L L+ N         
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 292 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIP 330
           +VL+L + +L   +   L  L  +  LDLS+NR     P
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP 37

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 26/103 (25%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL---------------- 315
           L+       +   +  L  +  L+L +N L+   P+ L  L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61

Query: 316 ------ESLDLSNNRF-SGQIPQQLVEFTFLEFFDVSDNYLTG 351
                 + L L NNR       Q LV    L   ++  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 20/189 (10%)

Query: 134 SLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHI 193
           +    + ++ +   N+ I       +  +PN+  L L  NK              + L  
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD-------IKPLANLKN 91

Query: 194 IDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253
           +                  +  +  +   +      +          L+       +   
Sbjct: 92  LGWLFL---------DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT 313
             ++     +  +     LS           +A L  LQ L L  N++       L  L 
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK 200

Query: 314 NLESLDLSN 322
           NL+ L+L +
Sbjct: 201 NLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ 328
           L        +  +   L  +  +  +N++++      +  L N+  L L+ N+ +  
Sbjct: 31  LKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDI 83

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 38/305 (12%), Positives = 89/305 (29%), Gaps = 26/305 (8%)

Query: 57  EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF---SDELSVLDLQGNNFFGTIPDTFIK 113
            + + +   ++VK +VLS N +     + L        +L + +           +    
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 114 ESRLGVIDLS-HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS 172
              L    L    L   R+  +    +  E L    ++ +     +L           + 
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVIS 232
            +    +   +       L  I    NR       +      + ++++T ++        
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 233 PYGQVSTDLISTYDY---------SLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPT 283
               +  + ++             +        +    K    L  + L+          
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 284 SIAN------LKGLQVLNLDNNNLQGHIPSCL-----GNLTNLESLDLSNNRFS--GQIP 330
           ++ +        GLQ L L  N ++      L       + +L  L+L+ NRFS    + 
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 331 QQLVE 335
            ++ E
Sbjct: 322 DEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 289 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ----IPQQLVEFTFLEFFDV 344
           K L++  +   + +  + + L    +++ + LS N    +    + + +     LE  + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 345 SDNYLTGAIPLGKQFATFDNTSFDGNSGLC 374
           SD +         +       +      L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 24/227 (10%)

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
           I    +     + ++  +   +  L      ++      +  + NL  L L+ N+     
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI---- 75

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
                         +    N         S   L  +  +   Q     D+ S      T
Sbjct: 76  ------------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
            L    +  ++     ++   + +  +     LS         T +ANL  L  L  D+N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
            +    P  L +L NL  + L NN+ S   P  L   + L    +++
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 2/117 (1%)

Query: 264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSN 322
           P   +G+  + +         +   + L  L ++N     H+    L  L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLS 379
           +      P        L   ++S N L        Q  +       GN   C   L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 1/127 (0%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
           + +    +    +     +  L + +      L         EL  L +  +      PD
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
            F    RL  ++LS N  +    +++   S  E +  GN         WL       +  
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 170 LRSNKFY 176
           +   K  
Sbjct: 135 VPEQKLQ 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 22/199 (11%)

Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
             L        + ++  +  ++  L      I       +  + NL  +   +N+   I 
Sbjct: 23  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT 78

Query: 180 KEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239
                      L   +   +       +           +           ++     S 
Sbjct: 79  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138

Query: 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN 299
            +      S + + +    + N++ D+                  +ANL  L+ L++ +N
Sbjct: 139 TISDISALSGLTSLQQLNFSSNQVTDL----------------KPLANLTTLERLDISSN 182

Query: 300 NLQGHIPSCLGNLTNLESL 318
            +     S L  LTNLESL
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 39/159 (24%), Positives = 58/159 (36%), Gaps = 6/159 (3%)

Query: 50  SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
           +   L  EIP  I        L+L+ N L  +    L      L  L+L+ N   G  P+
Sbjct: 16  TGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
            F   S +  + L  N  +    +  +   +L+ L+L +NQIS   P     + +L  L 
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK 208
           L SN F               L    L+        PSK
Sbjct: 133 LASNPFNCN---CHLAWFAEWLRKKSLNGGAARCGAPSK 168

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 284 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 325
              N    + L+L    +   I +    L   +++D S+N  
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKE 181
           L+  L +        N  +   LDL   +I     +   T+   + +    N+   +   
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 182 PRTDCRFSKLHIIDLSNNRFTGKLP 206
           P       +L  + ++NNR      
Sbjct: 60  P----LLRRLKTLLVNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331
           L   +   VI    A L     ++  +N +          L  L++L ++NNR       
Sbjct: 25  LRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRICRIGEG 81

Query: 332 QLVEFTFLEFFDVSDNYLT 350
                  L    +++N L 
Sbjct: 82  LDQALPDLTELILTNNSLV 100

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 273 SSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH--IPSCLGNLTNLESLDLSNNRFSGQIP 330
             +     +     N+  L  LNL NN L     + S +    NL+ L+LS N    +  
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 331 QQLVEFTFLEFFDVSDNYLTGAIPLGKQFATF 362
              ++   LE   +  N L+        + + 
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 31/199 (15%), Positives = 53/199 (26%), Gaps = 33/199 (16%)

Query: 106 TIPDT---FIKESRLGVIDLSHNLFQGRIPR------SLVNCSKLEFLDLGNNQISDTFP 156
           TI D    F +   +   +       G IP       +L      + L L  N I     
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--I 63

Query: 157 SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAM 216
           S L  + NL +L L  N    I           +L I                       
Sbjct: 64  SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI----------------------S 101

Query: 217 KIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNR 276
                S     + V      +S + I+ +     + +  ++       + L      +N 
Sbjct: 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

Query: 277 FDRVIPTSIANLKGLQVLN 295
                   +  L  L+ L+
Sbjct: 162 TSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.7e-33  Score=261.22  Aligned_cols=258  Identities=30%  Similarity=0.460  Sum_probs=180.7

Q ss_pred             CCcEEEccCCcccc--ccchhhhcCCCCCeeeccc-CcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccE
Q 038396           43 ETILYLVSNNSLTG--EIPSWICNLNTVKNLVLSH-NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV  119 (456)
Q Consensus        43 ~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  119 (456)
                      +++.|+|++|.+++  .+|..+.++++|++|+|++ |+++|.+|.++++++ +|++|++++|++.+..+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc-ccchhhhccccccccccccccchhhhcc
Confidence            45666666666655  3456666666666666654 556656666666665 5666666666666655555666666666


Q ss_pred             EeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCC-CEEEccCCcccccCCCCCCccCCCCccEEeccc
Q 038396          120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL-NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN  198 (456)
Q Consensus       120 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~  198 (456)
                      +++++|.+.+.+|..+..+++|+.+++++|.+++.+|..+..+.++ +.+++++|++++..+..+  ..+          
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l----------  197 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANL----------  197 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGC----------
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc--ccc----------
Confidence            6666666665556666666666666666666655555555554443 445555554444322211  111          


Q ss_pred             ccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC
Q 038396          199 NRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD  278 (456)
Q Consensus       199 n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  278 (456)
                                                                                         ....++++.+...
T Consensus       198 -------------------------------------------------------------------~~~~l~l~~~~~~  210 (313)
T d1ogqa_         198 -------------------------------------------------------------------NLAFVDLSRNMLE  210 (313)
T ss_dssp             -------------------------------------------------------------------CCSEEECCSSEEE
T ss_pred             -------------------------------------------------------------------ccccccccccccc
Confidence                                                                               1334666666666


Q ss_pred             ccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCC
Q 038396          279 RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQ  358 (456)
Q Consensus       279 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~  358 (456)
                      +.+|..+..+++++.+++++|.+++.+| .+..+++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+|....
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            6677788888999999999999986654 588899999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCcccCCCCCCCCCCCCCCC
Q 038396          359 FATFDNTSFDGNSGLCGRPLSKGC  382 (456)
Q Consensus       359 ~~~l~~~~~~~n~~lc~~~~~~~c  382 (456)
                      ++.++.+++.||+.+||.|++ .|
T Consensus       290 L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCCHHHhCCCccccCCCCC-CC
Confidence            889999999999999998874 45

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1e-30  Score=242.28  Aligned_cols=247  Identities=28%  Similarity=0.375  Sum_probs=193.0

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccC-CccccccchhhhcCCCCCeeecccCcCccccChhhhhCCC
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSN-NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSD   91 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   91 (456)
                      ++++|||++|.++..    ..+|..   +++|++|++++ |++++.+|..|.++++|++|+|++|++.+..+..+..+. 
T Consensus        51 ~v~~L~L~~~~l~g~----~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-  125 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-  125 (313)
T ss_dssp             CEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-
T ss_pred             EEEEEECCCCCCCCC----CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh-
Confidence            589999999988621    134443   89999999986 899999999999999999999999999988888888888 


Q ss_pred             CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC-cEEeCcCCcCCcCCCccccCCCCCCEEEc
Q 038396           92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL-EFLDLGNNQISDTFPSWLGTIPNLNVLIL  170 (456)
Q Consensus        92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  170 (456)
                      .|+++++++|.+.+.+|..+..++.|+++++++|.+.+.+|..+..+.++ +.+++++|++++..|..+..+..+ .+++
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l  204 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDL  204 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEEC
T ss_pred             hhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            89999999999999999999999999999999999999999999988876 899999999999999888877554 7999


Q ss_pred             cCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeE
Q 038396          171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLI  250 (456)
Q Consensus       171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (456)
                      +.+...+..+...  ..+++++.+++++|.+.+.++                                            
T Consensus       205 ~~~~~~~~~~~~~--~~~~~l~~l~~~~~~l~~~~~--------------------------------------------  238 (313)
T d1ogqa_         205 SRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLG--------------------------------------------  238 (313)
T ss_dssp             CSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGG--------------------------------------------
T ss_pred             ccccccccccccc--ccccccccccccccccccccc--------------------------------------------
Confidence            9888877765544  566777777777776653222                                            


Q ss_pred             eeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCc
Q 038396          251 MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIP  330 (456)
Q Consensus       251 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  330 (456)
                                                       .+..+++|+.|+|++|++++.+|..|+++++|++|+|++|+++|.+|
T Consensus       239 ---------------------------------~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         239 ---------------------------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             ---------------------------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ---------------------------------ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence                                             23444556666666666666666666666666666666666665555


Q ss_pred             hhhhcCCCCCEEeccCCc
Q 038396          331 QQLVEFTFLEFFDVSDNY  348 (456)
Q Consensus       331 ~~l~~l~~L~~L~ls~N~  348 (456)
                      . +..+++|+.+++++|+
T Consensus       286 ~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             C-STTGGGSCGGGTCSSS
T ss_pred             C-cccCCCCCHHHhCCCc
Confidence            3 3455566666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=6.3e-28  Score=229.95  Aligned_cols=300  Identities=24%  Similarity=0.302  Sum_probs=182.6

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      +.+|++|++++|+|++...+.     .+++|++|++++|+|++..  .+.++++|++|++++|.+++. + .+..++ +|
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~-----~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~-~L  112 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVE-----YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLT-NL  112 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGG-----GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCT-TC
T ss_pred             hCCCCEEECCCCCCCCccccc-----cCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc-c-cccccc-cc
Confidence            788999999999998432222     3789999999999999653  399999999999999999844 3 377888 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcc-----------------------------------------cCC
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-----------------------------------------RIP  132 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------------------------~~~  132 (456)
                      +.|+++++.+++..+.  .....+..+....|.+..                                         ...
T Consensus       113 ~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (384)
T d2omza2         113 TGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  190 (384)
T ss_dssp             CEEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            9999999988754322  222333333333322110                                         122


Q ss_pred             ccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhC
Q 038396          133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLC  212 (456)
Q Consensus       133 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  212 (456)
                      ..+..+++++.+++++|.+++..|  +..+++|++|++++|.++...  .+  ..+++|+.+++++|.+++ ++.  +..
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l--~~l~~L~~L~l~~n~l~~-~~~--~~~  261 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TL--ASLTNLTDLDLANNQISN-LAP--LSG  261 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GG--GGCTTCSEEECCSSCCCC-CGG--GTT
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hh--hcccccchhccccCccCC-CCc--ccc
Confidence            345566778888888888775543  455677888888888776542  22  567788888888888774 332  666


Q ss_pred             ccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCC
Q 038396          213 LDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ  292 (456)
Q Consensus       213 l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  292 (456)
                      +++|+.++++.+.......  +                           .....++.++++.|.+++.  ..+..+++++
T Consensus       262 ~~~L~~L~l~~~~l~~~~~--~---------------------------~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~  310 (384)
T d2omza2         262 LTKLTELKLGANQISNISP--L---------------------------AGLTALTNLELNENQLEDI--SPISNLKNLT  310 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--G---------------------------TTCTTCSEEECCSSCCSCC--GGGGGCTTCS
T ss_pred             cccCCEeeccCcccCCCCc--c---------------------------ccccccccccccccccccc--cccchhcccC
Confidence            7777777777655421100  0                           0123345555555555442  2344555555


Q ss_pred             eEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCC
Q 038396          293 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGN  370 (456)
Q Consensus       293 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n  370 (456)
                      .|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..| -..++.++.+++.+|
T Consensus       311 ~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         311 YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             eEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            5555555555332  24555555555555555542 22 35555555555555555554433 223444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=2.8e-27  Score=218.18  Aligned_cols=266  Identities=21%  Similarity=0.231  Sum_probs=196.9

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS   94 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~   94 (456)
                      ..+.+|-++++++       .+|.. ++++++|++++|+|+...+.+|.++++|++|++++|.+....|..|..+. +|+
T Consensus        11 ~~~~~~C~~~~L~-------~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~   82 (305)
T d1xkua_          11 HLRVVQCSDLGLE-------KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLE   82 (305)
T ss_dssp             ETTEEECTTSCCC-------SCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCC
T ss_pred             cCCEEEecCCCCC-------ccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC-ccC
Confidence            5677888888887       55554 57788999999998866666788888999999999988866677788887 889


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC--cCCCccccCCCCCCEEEccC
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS--DTFPSWLGTIPNLNVLILRS  172 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~  172 (456)
                      +|++++|+++. +|..+  ...++.|++++|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++
T Consensus        83 ~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          83 RLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             EEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             EecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            99999988884 44432  357888888888888766667777788888888877543  23345677788888888888


Q ss_pred             CcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEee
Q 038396          173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN  252 (456)
Q Consensus       173 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (456)
                      |.+..+..     ..+++|+.|++++|..++..+ ..+..                                        
T Consensus       160 n~l~~l~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~----------------------------------------  193 (305)
T d1xkua_         160 TNITTIPQ-----GLPPSLTELHLDGNKITKVDA-ASLKG----------------------------------------  193 (305)
T ss_dssp             SCCCSCCS-----SCCTTCSEEECTTSCCCEECT-GGGTT----------------------------------------
T ss_pred             CCccccCc-----ccCCccCEEECCCCcCCCCCh-hHhhc----------------------------------------
Confidence            88765532     235678888888887763333 22222                                        


Q ss_pred             ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396          253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ  332 (456)
Q Consensus       253 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  332 (456)
                                 ++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|.+|..+++|++|+|++|+|+......
T Consensus       194 -----------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         194 -----------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             -----------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             -----------cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhh
Confidence                       234777888888888877788888888888888888888 56778888888888888888887433222


Q ss_pred             ------hhcCCCCCEEeccCCcCc
Q 038396          333 ------LVEFTFLEFFDVSDNYLT  350 (456)
Q Consensus       333 ------l~~l~~L~~L~ls~N~l~  350 (456)
                            ...+++|+.|++++|+++
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCcchhcccCCCCEEECCCCcCc
Confidence                  335677888888888875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-28  Score=222.72  Aligned_cols=247  Identities=20%  Similarity=0.225  Sum_probs=192.5

Q ss_pred             eeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc-C
Q 038396           70 NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG-N  148 (456)
Q Consensus        70 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls-~  148 (456)
                      .++++++.++ .+|..+.   ..+++|+|++|+|+.+.+.+|.++++|++|++++|++....+..+..+..++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566777777 6676543   368888888888887777778888888888888888887777778888888887764 5


Q ss_pred             CcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccc
Q 038396          149 NQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ  228 (456)
Q Consensus       149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~  228 (456)
                      +.++...+..|+++++|++|++++|.+.......+  ....+|+.+++++|.++ .++...|..                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~-~i~~~~f~~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT----------------
T ss_pred             cccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhcccccc-ccChhHhcc----------------
Confidence            66766667788888888888888888877665555  66788888888888887 555443332                


Q ss_pred             cccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCcc
Q 038396          229 DVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSC  308 (456)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  308 (456)
                                                         ...|+.|++++|.++...+..|.++++|+.+++++|++++..|..
T Consensus       152 -----------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         152 -----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             -----------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhH
Confidence                                               234788888889888888889999999999999999999899999


Q ss_pred             ccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCC
Q 038396          309 LGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLC  374 (456)
Q Consensus       309 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc  374 (456)
                      |.++++|++|++++|++.+..+..|..+++|++|++++|++.|.++..+....++......+...|
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C  262 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC  262 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEe
Confidence            999999999999999999888888999999999999999999988754333333333333333334

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=7.4e-27  Score=215.30  Aligned_cols=269  Identities=21%  Similarity=0.286  Sum_probs=207.6

Q ss_pred             CCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396           43 ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL  122 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  122 (456)
                      ..+.++-+++.++ .+|..+.  +++++|+|++|+|+...+.+|.+++ +|++|++++|.+....|..|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccc-cccccccccccccccchhhhhCCCccCEecc
Confidence            4567777777787 5565553  5788888888888833334677777 7888888888888777788888888888888


Q ss_pred             cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      ++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..+....|...........+..+++|+.+++++|.+.
T Consensus        87 ~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            888888 444433  35788888888888866666667777788888877765544333333466777888888887776


Q ss_pred             CCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCc
Q 038396          203 GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIP  282 (456)
Q Consensus       203 ~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  282 (456)
                       .+|..                                                      .+++|++|++++|......+
T Consensus       164 -~l~~~------------------------------------------------------~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         164 -TIPQG------------------------------------------------------LPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             -SCCSS------------------------------------------------------CCTTCSEEECTTSCCCEECT
T ss_pred             -ccCcc------------------------------------------------------cCCccCEEECCCCcCCCCCh
Confidence             44421                                                      14568999999999999899


Q ss_pred             hhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC-------
Q 038396          283 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL-------  355 (456)
Q Consensus       283 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~-------  355 (456)
                      ..+..++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..+..+++|++|++++|+|+.....       
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~  267 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  267 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcch
Confidence            99999999999999999999888999999999999999999998 6788999999999999999999854221       


Q ss_pred             CCCCCCCCCcccCCCCCCC
Q 038396          356 GKQFATFDNTSFDGNSGLC  374 (456)
Q Consensus       356 ~~~~~~l~~~~~~~n~~lc  374 (456)
                      .....++..+++.|||+-+
T Consensus       268 ~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         268 NTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CTTSCCCSEEECCSSSSCG
T ss_pred             hcccCCCCEEECCCCcCcc
Confidence            1234567778889998765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=211.71  Aligned_cols=250  Identities=21%  Similarity=0.255  Sum_probs=138.0

Q ss_pred             EEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEE
Q 038396           19 ALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLD   97 (456)
Q Consensus        19 ~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~   97 (456)
                      .++.++++++       .+|.. ++.+++|+|++|+|+...+.+|.++++|++|++++|.+....+..+.... .++.++
T Consensus        15 ~v~c~~~~L~-------~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~-~~~~l~   86 (284)
T d1ozna_          15 TTSCPQQGLQ-------AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLD   86 (284)
T ss_dssp             EEECCSSCCS-------SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEE
T ss_pred             EEEcCCCCCC-------ccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc-cccccc
Confidence            3455555554       34433 34556666666666655555566666666666666666644444444444 555554


Q ss_pred             cc-CCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCccc
Q 038396           98 LQ-GNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY  176 (456)
Q Consensus        98 Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  176 (456)
                      .. .+.++...+..|.++++|++|++++|.+....+..+..+.+|+.+++++|.+++..+.+|..+++|++|++++|++.
T Consensus        87 ~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence            43 34454444555555666666666666555444445555555666666666555444455555555555555555555


Q ss_pred             ccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCc
Q 038396          177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR  256 (456)
Q Consensus       177 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (456)
                      ++.+..+  ..+++|+++                                                              
T Consensus       167 ~l~~~~f--~~l~~L~~l--------------------------------------------------------------  182 (284)
T d1ozna_         167 SVPERAF--RGLHSLDRL--------------------------------------------------------------  182 (284)
T ss_dssp             EECTTTT--TTCTTCCEE--------------------------------------------------------------
T ss_pred             ccchhhh--ccccccchh--------------------------------------------------------------
Confidence            5444333  344444444                                                              


Q ss_pred             ccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcC
Q 038396          257 MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF  336 (456)
Q Consensus       257 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l  336 (456)
                                    ++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|.+...-+. ..-.
T Consensus       183 --------------~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~  247 (284)
T d1ozna_         183 --------------LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLW  247 (284)
T ss_dssp             --------------ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHH
T ss_pred             --------------hhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHH
Confidence                          4444445555556666666777777777777666666666677777777777766543221 1111


Q ss_pred             CCCCEEeccCCcCcccCCC
Q 038396          337 TFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       337 ~~L~~L~ls~N~l~~~~p~  355 (456)
                      ..++.+....+++.|..|.
T Consensus       248 ~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         248 AWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             HHHHHCCSEECCCBEEESG
T ss_pred             HHHHhCcCCCCceEeCCch
Confidence            1233445555666666553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.1e-25  Score=214.20  Aligned_cols=280  Identities=21%  Similarity=0.218  Sum_probs=216.6

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +.++++|+++++.|+..  +.+..+++|++|++++|++++ ++ .+.+++ +|++|++++|.+.+..  .+..+++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~-~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLT-KLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCT-TCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCc-cccccccccccccccc--ccccccccccc
Confidence            67899999999999853  458889999999999999994 44 388888 8999999999998653  37899999999


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCC-----------------------------------------cCCCccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS-----------------------------------------DTFPSWL  159 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~-----------------------------------------~~~~~~~  159 (456)
                      ++++|.+++..+  ......+..+....|.+.                                         ......+
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            999999885433  223334444433332221                                         1123455


Q ss_pred             cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccc
Q 038396          160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST  239 (456)
Q Consensus       160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~  239 (456)
                      ..+++++.+++++|.+++..+.    ...++|++|++++|.++ .++  .+..+++++.++++++.+.....        
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~----~~~~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--------  258 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLAP--------  258 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--------
T ss_pred             ccccccceeeccCCccCCCCcc----cccCCCCEEECCCCCCC-Ccc--hhhcccccchhccccCccCCCCc--------
Confidence            6788999999999999877542    55789999999999998 554  47788889999888876521110        


Q ss_pred             cccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeee
Q 038396          240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD  319 (456)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  319 (456)
                                           ...+++|++|++++|.+++..  .+..++.++.+++++|++++.  ..+..+++++.|+
T Consensus       259 ---------------------~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~  313 (384)
T d2omza2         259 ---------------------LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLT  313 (384)
T ss_dssp             ---------------------GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEE
T ss_pred             ---------------------ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEE
Confidence                                 112567999999999998753  477899999999999999853  4588899999999


Q ss_pred             CCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCC
Q 038396          320 LSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSG  372 (456)
Q Consensus       320 Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~  372 (456)
                      +++|++++..  .+..+++|+.|++++|++++ +|.-..++.++.+++.+|..
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcC
Confidence            9999999643  38899999999999999985 44445678888899988864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=201.49  Aligned_cols=205  Identities=23%  Similarity=0.293  Sum_probs=140.1

Q ss_pred             cCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396           64 NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  143 (456)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  143 (456)
                      +...+.+++.+++.++ .+|..+.   +++++|+|++|.|+++.+.+|..+++|++|++++|+++. ++ .++.+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            3445556677777776 5565442   257777777777776655667777777777777777763 22 2455666777


Q ss_pred             EeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccC
Q 038396          144 LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ  223 (456)
Q Consensus       144 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~  223 (456)
                      |++++|+++ ..+..+..+++|+.|++++|.+....+..+  ..+.+                                 
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~---------------------------------  125 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGE---------------------------------  125 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTT---------------------------------
T ss_pred             ccccccccc-ccccccccccccccccccccccceeecccc--ccccc---------------------------------
Confidence            777776665 334455566666666666665544433222  33333                                 


Q ss_pred             ccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccc
Q 038396          224 LRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG  303 (456)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (456)
                                                                 +++|++++|.++...+..+..+++|+.|++++|++++
T Consensus       126 -------------------------------------------l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_         126 -------------------------------------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             -------------------------------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             -------------------------------------------cccccccccccceeccccccccccchhcccccccccc
Confidence                                                       4555555555555566667778888999999999987


Q ss_pred             cCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396          304 HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP  354 (456)
Q Consensus       304 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p  354 (456)
                      ..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++.|.+.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            77788888999999999999988 788888888999999999999887664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=195.05  Aligned_cols=112  Identities=28%  Similarity=0.301  Sum_probs=96.6

Q ss_pred             cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396          266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS  345 (456)
Q Consensus       266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls  345 (456)
                      .|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            36666666666666667778889999999999999998888888899999999999999998888889999999999999


Q ss_pred             CCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396          346 DNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL  378 (456)
Q Consensus       346 ~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  378 (456)
                      +|+|+ .+|.+ ..+..++.+.+.||||.|+|.+
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            99999 56654 5677888999999999999853

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.88  E-value=1.3e-20  Score=176.41  Aligned_cols=288  Identities=25%  Similarity=0.309  Sum_probs=182.2

Q ss_pred             CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396           15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS   94 (456)
Q Consensus        15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~   94 (456)
                      .++++|||++|.++       .+|..+++|++|++++|+|+ .+|+.   +.+|++|++++|.++ .++.    +++.|+
T Consensus        38 ~~l~~LdLs~~~L~-------~lp~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLS-------SLPELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCS-------CCCSCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCC
T ss_pred             cCCCEEEeCCCCCC-------CCCCCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccc
Confidence            47999999999997       67777889999999999999 66764   468999999999998 5443    444799


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCc
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK  174 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  174 (456)
                      +|++++|.++ .+|. +..+++|++|++++|.+.. .+.   ....+..+.+..+...  ....+..++.++.+++++|.
T Consensus       102 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceeccccccc
Confidence            9999999998 4554 6789999999999998873 332   2355677777766654  23456677778888888777


Q ss_pred             ccccCCCCC----------------CccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcc
Q 038396          175 FYGIIKEPR----------------TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVS  238 (456)
Q Consensus       175 l~~~~~~~~----------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~  238 (456)
                      .........                ....++.|+.+++++|... .++.    ....+..+.+..+.......       
T Consensus       174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~~~-------  241 (353)
T d1jl5a_         174 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLPE-------  241 (353)
T ss_dssp             CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCCC-------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-cccc----cccccccccccccccccccc-------
Confidence            654322111                0133455555555555444 2221    11112222222221100000       


Q ss_pred             ccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCee
Q 038396          239 TDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL  318 (456)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  318 (456)
                       ...   ..................+......++..+.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|
T Consensus       242 -~~~---~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L  309 (353)
T d1jl5a_         242 -LPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERL  309 (353)
T ss_dssp             -CCT---TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred             -ccc---cccccccccccccccccccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEE
Confidence             000   00000000111111222234455666666666553    234678999999999998 56643   5789999


Q ss_pred             eCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396          319 DLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL  355 (456)
Q Consensus       319 ~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~  355 (456)
                      +|++|+|+ .+|..   +++|++|++++|+++ .+|.
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            99999998 56643   467999999999987 4553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.3e-20  Score=164.98  Aligned_cols=209  Identities=21%  Similarity=0.308  Sum_probs=147.7

Q ss_pred             CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEE
Q 038396           65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  144 (456)
Q Consensus        65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  144 (456)
                      +.++..++++.+.+++..  .+..+. +|++|++.+|.|+..  ..+..+++|++|++++|++++..+  +..+++|+++
T Consensus        18 l~~~~~~~l~~~~~~d~~--~~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l   90 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITEL   90 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEE
T ss_pred             HHHHHHHHhCCCCcCCcC--CHHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccc
Confidence            334445667777777543  345555 788888888888743  347778888888888888875433  7778888888


Q ss_pred             eCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCc
Q 038396          145 DLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQL  224 (456)
Q Consensus       145 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~  224 (456)
                      ++++|.++..  ..+..+++|+.++++++...+..+  +  ...+.++.+.++++.+....+   +..            
T Consensus        91 ~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~---~~~------------  149 (227)
T d1h6ua2          91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--L--AGLSNLQVLYLDLNQITNISP---LAG------------  149 (227)
T ss_dssp             ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--G--TTCTTCCEEECCSSCCCCCGG---GGG------------
T ss_pred             cccccccccc--ccccccccccccccccccccccch--h--ccccchhhhhchhhhhchhhh---hcc------------
Confidence            8888887632  357778888888888877665422  2  445677777777776652111   111            


Q ss_pred             cccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc
Q 038396          225 RYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH  304 (456)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  304 (456)
                                                             ++.|++|++++|.+.+.  ..+.++++|++|+|++|++++ 
T Consensus       150 ---------------------------------------~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         150 ---------------------------------------LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-
T ss_pred             ---------------------------------------ccccccccccccccccc--hhhcccccceecccCCCccCC-
Confidence                                                   34478888888887653  247888999999999999984 


Q ss_pred             CCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC
Q 038396          305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD  346 (456)
Q Consensus       305 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~  346 (456)
                      ++ .+.++++|++|+|++|++++ ++ .+..+++|+.|++++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            33 37889999999999999985 43 388899999999873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=166.35  Aligned_cols=222  Identities=16%  Similarity=0.122  Sum_probs=136.9

Q ss_pred             CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCc
Q 038396           69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLG  147 (456)
Q Consensus        69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls  147 (456)
                      +.+++++..++ .+|..+.   +++++|++++|.|+.+.+.+|.++++|++|++++|.+... .+.+|..+++++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46667766676 6665442   2677777777777766566677777777777777776643 34467777777777765


Q ss_pred             -CCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396          148 -NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY  226 (456)
Q Consensus       148 -~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~  226 (456)
                       .|.+....+..|..+++|+++++++|++....+... ...+..+..+..+++.+. .++...+..+             
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~-~~~l~~l~~~~~~n~~l~-~i~~~~~~~~-------------  151 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIH-TIERNSFVGL-------------  151 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTT-TCBSSCEEEEEESCTTCC-EECTTSSTTS-------------
T ss_pred             ccccccccccccccccccccccccchhhhcccccccc-cccccccccccccccccc-cccccccccc-------------
Confidence             356666666677777778888877777765433221 123444444444555544 3332211111             


Q ss_pred             cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396          227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP  306 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (456)
                                                           ...++.|++++|+++.+.+..+....-++.+++++|+++...+
T Consensus       152 -------------------------------------~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         152 -------------------------------------SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN  194 (242)
T ss_dssp             -------------------------------------BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCT
T ss_pred             -------------------------------------cccceeeecccccccccccccccchhhhccccccccccccccH
Confidence                                                 2236677777777777555444433223344567777875555


Q ss_pred             ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC
Q 038396          307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD  346 (456)
Q Consensus       307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~  346 (456)
                      ..|.++++|++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            5677888888888888888754445566666666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=1.7e-18  Score=161.88  Aligned_cols=278  Identities=23%  Similarity=0.272  Sum_probs=179.0

Q ss_pred             CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396           14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL   93 (456)
Q Consensus        14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L   93 (456)
                      .++|++|+|++|+|+       .+|..+.+|+.|++++|+++ .+++.   .+.|++|++++|.++ .+|. ++.+. +|
T Consensus        57 ~~~L~~L~Ls~N~l~-------~lp~~~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~-~L  122 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-------ELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSS-FL  122 (353)
T ss_dssp             CTTCSEEECCSSCCS-------SCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCT-TC
T ss_pred             CCCCCEEECCCCCCc-------ccccchhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhc-cc
Confidence            468999999999998       67777889999999999998 33321   246999999999998 6664 56777 89


Q ss_pred             cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcC------------------C
Q 038396           94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT------------------F  155 (456)
Q Consensus        94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~------------------~  155 (456)
                      ++|++++|.+... +.   ....+..+.+..+...  ....+..++.++.+++++|.+...                  .
T Consensus       123 ~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~  196 (353)
T d1jl5a_         123 KIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE  196 (353)
T ss_dssp             CEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS
T ss_pred             eeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccccccccccccccccccccccc
Confidence            9999999988733 22   2344555555555443  223455556666666665554321                  1


Q ss_pred             CccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCC
Q 038396          156 PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG  235 (456)
Q Consensus       156 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~  235 (456)
                      ...+..++.|+.+++++|......      ....++..+.+.++.+. ..+.    ....+...+...+.....     .
T Consensus       197 ~~~~~~l~~L~~l~l~~n~~~~~~------~~~~~l~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~l-----~  260 (353)
T d1jl5a_         197 LPELQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFSGL-----S  260 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSEE-----S
T ss_pred             cccccccccccccccccccccccc------ccccccccccccccccc-cccc----cccccccccccccccccc-----c
Confidence            123466789999999999876542      23457888888888876 3221    112222222222111000     0


Q ss_pred             CccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCC
Q 038396          236 QVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL  315 (456)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  315 (456)
                      ...   .   ..................+++|++|++++|+++. +|.   .+++|+.|+|++|+|+ .+|..   +++|
T Consensus       261 ~l~---~---~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L  326 (353)
T d1jl5a_         261 ELP---P---NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL---PQNL  326 (353)
T ss_dssp             CCC---T---TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTC
T ss_pred             ccc---c---hhcccccccCccccccccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc---cCCC
Confidence            000   0   0000111111222333456789999999999987 443   3678999999999999 56653   4689


Q ss_pred             CeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396          316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVS  345 (456)
Q Consensus       316 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls  345 (456)
                      ++|++++|+++ .+|+.   ..+|+.|.+.
T Consensus       327 ~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         327 KQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            99999999998 66753   3457777664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=4.5e-20  Score=157.00  Aligned_cols=172  Identities=20%  Similarity=0.218  Sum_probs=119.5

Q ss_pred             CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCcccc-ccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396           17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTG-EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS   94 (456)
Q Consensus        17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~   94 (456)
                      .+.++.++++++       .+|.. ++++++|+|++|+|++ ..+..|.++++|++|++++|.+....+..+..+. +|+
T Consensus        10 ~~~v~Cs~~~L~-------~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLK-------EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQ   81 (192)
T ss_dssp             TTEEECTTSCCS-------SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCC
T ss_pred             CCEEEEeCCCcC-------ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccc
Confidence            567888888887       55554 4678888888888875 3456678888888888888888866677777776 788


Q ss_pred             EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCc
Q 038396           95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK  174 (456)
Q Consensus        95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  174 (456)
                      +|++++|+|+.+.+.+|.++++|++|+|++|++++..+.+|..+++|++|+|++|.+....... .-...++.+.+..+.
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~  160 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGA  160 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGG
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCC
Confidence            8888888888777778888888888888888888777777888888888888888776332211 111224445555555


Q ss_pred             ccccCCCCCCccCCCCccEEecccccCc
Q 038396          175 FYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       175 l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      +....|.     .+..++.++++.|.++
T Consensus       161 ~~c~~p~-----~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         161 ARCGAPS-----KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CBBCSST-----TTTTSBGGGSCTTTCC
T ss_pred             eEeCCCh-----hhcCCEeeecCHhhCc
Confidence            5543332     2345555666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.3e-19  Score=156.03  Aligned_cols=206  Identities=21%  Similarity=0.334  Sum_probs=148.3

Q ss_pred             CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396           44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS  123 (456)
Q Consensus        44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  123 (456)
                      +..++++.+++++..  .+..+.+|++|++.+|.++ .+ .++..++ +|++|++++|.+++..|  +..+++|++++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l-~~l~~l~-~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TI-EGVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CC-TTGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cc-hhHhcCC-CCcEeecCCceeecccc--ccccccccccccc
Confidence            344556666666543  3566778888888888887 44 3577777 78888888888875433  7778888888888


Q ss_pred             CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcC
Q 038396          124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTG  203 (456)
Q Consensus       124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~  203 (456)
                      +|.++. ++ .+..+++|+.++++++...+.  ..+...+.++.+.++++.+....+  +  ..+++|+.|++++|.+.+
T Consensus        94 ~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~--~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2          94 GNPLKN-VS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L--AGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             SCCCSC-CG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCC
T ss_pred             cccccc-cc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--h--cccccccccccccccccc
Confidence            888773 33 577888888888888877643  346677788888888887765422  2  567788888888887762


Q ss_pred             CCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCch
Q 038396          204 KLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPT  283 (456)
Q Consensus       204 ~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  283 (456)
                       .+.  +..                                                   +++|++|++++|++++. + 
T Consensus       166 -~~~--l~~---------------------------------------------------l~~L~~L~Ls~n~l~~l-~-  189 (227)
T d1h6ua2         166 -LTP--LAN---------------------------------------------------LSKLTTLKADDNKISDI-S-  189 (227)
T ss_dssp             -CGG--GTT---------------------------------------------------CTTCCEEECCSSCCCCC-G-
T ss_pred             -chh--hcc---------------------------------------------------cccceecccCCCccCCC-h-
Confidence             211  111                                                   34588888888888774 3 


Q ss_pred             hhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCC
Q 038396          284 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN  322 (456)
Q Consensus       284 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  322 (456)
                      .+..+++|++|+|++|++++. + .++++++|++|++++
T Consensus       190 ~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            378899999999999999854 3 388999999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.2e-19  Score=157.81  Aligned_cols=201  Identities=15%  Similarity=0.185  Sum_probs=107.9

Q ss_pred             CCCeeecccCcCccccChhhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccC-CcCcccCCccccCCCCCcEE
Q 038396           67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEFL  144 (456)
Q Consensus        67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L  144 (456)
                      ++++|++++|+++...+..|.+++ +|++|++++|.+... .+.+|..++.++++.+.. |++....+..|.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCccChhHhhccc-hhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            445555555555422222344444 455555555544432 233455555555555432 44444445555555566666


Q ss_pred             eCcCCcCCcCCCc-cccCCCCCCEEEccCCcccccCCCCCCccCC-CCccEEecccccCcCCCChhhhhCcccccccccc
Q 038396          145 DLGNNQISDTFPS-WLGTIPNLNVLILRSNKFYGIIKEPRTDCRF-SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTS  222 (456)
Q Consensus       145 ~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~  222 (456)
                      ++++|.+....+. .+..+..+..+...++.+..+....+  ..+ ..++.|++++|.++ .++...+..          
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~--~~~~~~l~~L~l~~n~l~-~i~~~~~~~----------  175 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQ-EIHNCAFNG----------  175 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCC-EECTTTTTT----------
T ss_pred             ccchhhhccccccccccccccccccccccccccccccccc--ccccccceeeeccccccc-ccccccccc----------
Confidence            6665555422111 12233344444445555555444333  222 35666777777766 333322111          


Q ss_pred             CccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccc
Q 038396          223 QLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ  302 (456)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  302 (456)
                                                               ....+.+++++|+++.+.+..|.++++|++|+|++|+++
T Consensus       176 -----------------------------------------~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         176 -----------------------------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             -----------------------------------------CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             -----------------------------------------hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence                                                     011233346677777766667888899999999999998


Q ss_pred             ccCCccccCCCCCCeeeCCC
Q 038396          303 GHIPSCLGNLTNLESLDLSN  322 (456)
Q Consensus       303 ~~~~~~l~~l~~L~~L~Ls~  322 (456)
                      ...+..|.++++|+.+++.+
T Consensus       215 ~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         215 SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCSSSCTTCCEEESSSEES
T ss_pred             ccCHHHHcCCcccccCcCCC
Confidence            66566677777777776643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.2e-18  Score=150.31  Aligned_cols=181  Identities=21%  Similarity=0.295  Sum_probs=101.9

Q ss_pred             eeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCC
Q 038396           70 NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN  149 (456)
Q Consensus        70 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n  149 (456)
                      ...+..+.+++.++.  ..+. +|++|++++|.++...  .+..+++|++|++++|++++. + .+..+++|++|++++|
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~-~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELN-SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHH-TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             HHHhCcCccCCccCH--HHhc-CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccc
Confidence            345555666544443  2344 5677777777766432  355666667777777666642 2 2456666666666666


Q ss_pred             cCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccc
Q 038396          150 QISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQD  229 (456)
Q Consensus       150 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~  229 (456)
                      ++++ ++ .+..+++|+.|++++|.+....  .+  ..++.++.+++++|.+                            
T Consensus       101 ~i~~-l~-~l~~l~~L~~L~l~~~~~~~~~--~l--~~l~~l~~l~~~~n~l----------------------------  146 (210)
T d1h6ta2         101 KVKD-LS-SLKDLKKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNNKI----------------------------  146 (210)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCCCG--GG--GGCTTCCEEECCSSCC----------------------------
T ss_pred             cccc-cc-cccccccccccccccccccccc--cc--cccccccccccccccc----------------------------
Confidence            6653 22 3555666666666666544321  11  3344444444444444                            


Q ss_pred             ccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccc
Q 038396          230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL  309 (456)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (456)
                                                                      ++.  ..+..+++|+.+++++|++++. + .+
T Consensus       147 ------------------------------------------------~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l  174 (210)
T d1h6ta2         147 ------------------------------------------------TDI--TVLSRLTKLDTLSLEDNQISDI-V-PL  174 (210)
T ss_dssp             ------------------------------------------------CCC--GGGGGCTTCSEEECCSSCCCCC-G-GG
T ss_pred             ------------------------------------------------ccc--cccccccccccccccccccccc-c-cc
Confidence                                                            331  2344566666777777766632 2 26


Q ss_pred             cCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396          310 GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS  345 (456)
Q Consensus       310 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls  345 (456)
                      .++++|++|+|++|+|+ .++ .+..+++|++|+|+
T Consensus       175 ~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            66677777777777766 343 46667777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.8e-19  Score=151.43  Aligned_cols=122  Identities=26%  Similarity=0.325  Sum_probs=69.2

Q ss_pred             CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396           68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  147 (456)
Q Consensus        68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  147 (456)
                      ...+.++.+.+++.++.  ..+. ++++|++++|.++..  +.+..+++|++|++++|++++..+  +.++++|++|+++
T Consensus        20 ~i~~~l~~~~~~~~~~~--~~l~-~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~   92 (199)
T d2omxa2          20 KMKTVLGKTNVTDTVSQ--TDLD-QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN   92 (199)
T ss_dssp             HHHHHTTCSSTTSEECH--HHHT-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHhCCCCCCCccCH--HHhc-CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccc
Confidence            33445666666644332  3444 677777777777632  235566677777777777664322  6666677777777


Q ss_pred             CCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396          148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT  202 (456)
Q Consensus       148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~  202 (456)
                      +|.+... + .++.+++|+.|++++|.+....  .+  ..+++|+.|++++|.+.
T Consensus        93 ~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~--~~--~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2          93 NNQIADI-T-PLANLTNLTGLTLFNNQITDID--PL--KNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             SSCCCCC-G-GGTTCTTCSEEECCSSCCCCCG--GG--TTCTTCSEEECCSSCCC
T ss_pred             ccccccc-c-cccccccccccccccccccccc--cc--chhhhhHHhhhhhhhhc
Confidence            7666532 2 3566666666666666554331  11  34455555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=4.6e-19  Score=150.63  Aligned_cols=107  Identities=19%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             EEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcC
Q 038396          270 IILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL  349 (456)
Q Consensus       270 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l  349 (456)
                      |+|++|+++.+.+..|.++++|++|+|++|+|++..+++|..+++|++|+|++|.+...... ..-...++.+.+..|.+
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~  161 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAA  161 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCe
Confidence            33333333333444455555566666666666555555555566666666666655432211 11111234445555666


Q ss_pred             cccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 038396          350 TGAIPLGKQFATFDNTSFDGNSGLCGRPLS  379 (456)
Q Consensus       350 ~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~  379 (456)
                      ++..|..  +..+...++..|...|..+-.
T Consensus       162 ~c~~p~~--l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         162 RCGAPSK--VRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             BBCSSTT--TTTSBGGGSCTTTCCCCCC--
T ss_pred             EeCCChh--hcCCEeeecCHhhCcCCCCCC
Confidence            5555532  333334445555555554433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.5e-18  Score=145.94  Aligned_cols=160  Identities=20%  Similarity=0.266  Sum_probs=111.2

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +.+++.|++++|.++..  +.+..+++|++|++++|++++. + .+.+++ +|++|++++|.+... + .+.++++|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~-~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLT-KLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCT-TCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc-c-cccCCc-ccccccccccccccc-c-ccccccccccc
Confidence            56777888888877742  3467778888888888887743 3 266776 788888888877633 3 36777888888


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR  200 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~  200 (456)
                      ++++|.+...  ..+..+++|+.|++++|.+.. + +.+..+++|+.|++.+|+++++.+  +  ..+++|++|++++|+
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~~--l--~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLKP--L--ANLTTLERLDISSNK  183 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCcc--c--cCCCCCCEEECCCCC
Confidence            8888777632  346777888888888887763 2 357777888888888887776532  3  667788888888888


Q ss_pred             CcCCCChhhhhCcccccc
Q 038396          201 FTGKLPSKSFLCLDAMKI  218 (456)
Q Consensus       201 l~~~~~~~~~~~l~~l~~  218 (456)
                      ++ .++  .+..+++|+.
T Consensus       184 i~-~i~--~l~~L~~L~~  198 (199)
T d2omxa2         184 VS-DIS--VLAKLTNLES  198 (199)
T ss_dssp             CC-CCG--GGGGCTTCSE
T ss_pred             CC-CCc--cccCCCCCCc
Confidence            77 444  2555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.8e-18  Score=147.01  Aligned_cols=164  Identities=26%  Similarity=0.352  Sum_probs=99.6

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +.+++.|++++|.++...  .+..+++|++|++++|++++ ++ .+..++ +|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~-~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLK-NLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCT-TCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCc-cccccccccccccc-cc-ccccccccccc
Confidence            455666677666666332  35666677777777776663 33 245555 67777777776663 33 35666677777


Q ss_pred             eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396          121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR  200 (456)
Q Consensus       121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~  200 (456)
                      ++++|.+.. + ..+..+++++.+++++|.+++.  ..+..+++|+++++++|+++++.+  +  ..+++|++|++++|.
T Consensus       118 ~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~--l--~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNH  189 (210)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSC
T ss_pred             ccccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccccc--c--cCCCCCCEEECCCCC
Confidence            777766652 2 2466666677777777766532  345566667777777776665422  2  556667777777776


Q ss_pred             CcCCCChhhhhCcccccccccc
Q 038396          201 FTGKLPSKSFLCLDAMKIVNTS  222 (456)
Q Consensus       201 l~~~~~~~~~~~l~~l~~l~l~  222 (456)
                      ++ .++  .+..+++|+.|+++
T Consensus       190 i~-~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         190 IS-DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CC-BCG--GGTTCTTCSEEEEE
T ss_pred             CC-CCh--hhcCCCCCCEEEcc
Confidence            66 444  25666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-20  Score=182.47  Aligned_cols=312  Identities=20%  Similarity=0.170  Sum_probs=183.8

Q ss_pred             CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc----ccchhhhcCCCCCeeecccCcCccccChhhhh---
Q 038396           16 YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG----EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN---   88 (456)
Q Consensus        16 ~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---   88 (456)
                      +|++||+++|++++. .+.. +...+++++.|+|++|.++.    .+..++..+++|++|+|++|.|++.....+..   
T Consensus         3 ~l~~ld~~~~~i~~~-~~~~-l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA-RWAE-LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHH-HHHH-HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChH-HHHH-HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            588899999988721 1111 11226788899999998874    33456678888999999999886432222322   


Q ss_pred             -CCCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCcccCC-------------------------------
Q 038396           89 -FSDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQGRIP-------------------------------  132 (456)
Q Consensus        89 -l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------------------  132 (456)
                       ...+|++|++++|++++.    ++..+..+++|++|++++|+++....                               
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             223699999999988743    34567778889999999887653100                               


Q ss_pred             --ccccCCCCCcEEeCcCCcCCc-----------------------------C----CCccccCCCCCCEEEccCCcccc
Q 038396          133 --RSLVNCSKLEFLDLGNNQISD-----------------------------T----FPSWLGTIPNLNVLILRSNKFYG  177 (456)
Q Consensus       133 --~~l~~l~~L~~L~Ls~n~i~~-----------------------------~----~~~~~~~l~~L~~L~L~~n~l~~  177 (456)
                        ..+.....++.++++.+.+..                             .    ....+...+.++.+.+++|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence              011123445556555543221                             0    00122346788999999987642


Q ss_pred             cCCC---CCCccCCCCccEEecccccCcCCCCh---hhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396          178 IIKE---PRTDCRFSKLHIIDLSNNRFTGKLPS---KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM  251 (456)
Q Consensus       178 ~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (456)
                      ....   .........++.+++++|.+......   ..+...+.++.++++.+.+.......+.                
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~----------------  304 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC----------------  304 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH----------------
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh----------------
Confidence            2100   01113457899999999987632111   1233455667777776654211100000                


Q ss_pred             eccCcccccccccccccEEEccCCCCCccCchh----hhccCCCCeEeCCCcccccc----CCcccc-CCCCCCeeeCCC
Q 038396          252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTS----IANLKGLQVLNLDNNNLQGH----IPSCLG-NLTNLESLDLSN  322 (456)
Q Consensus       252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~Ls~  322 (456)
                            .........|+.+++++|.++......    +...++|++|+|++|++++.    ++..+. ..+.|++|+|++
T Consensus       305 ------~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~  378 (460)
T d1z7xw1         305 ------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  378 (460)
T ss_dssp             ------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ------ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCC
Confidence                  000111234777888877776543332    34456788888888877643    222332 345678888888


Q ss_pred             Cccccc----CchhhhcCCCCCEEeccCCcCcc
Q 038396          323 NRFSGQ----IPQQLVEFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       323 N~l~~~----~~~~l~~l~~L~~L~ls~N~l~~  351 (456)
                      |.|+..    +.+.+..+++|++|++++|+++.
T Consensus       379 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         379 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            877642    34455667778888888887763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.6e-19  Score=169.82  Aligned_cols=307  Identities=14%  Similarity=0.115  Sum_probs=200.1

Q ss_pred             CCCcEEEccCCcccccc-chhhhcCCCCCeeecccCcCcc----ccChhhhhCCCCCcEEEccCCcccee----CCcccc
Q 038396           42 PETILYLVSNNSLTGEI-PSWICNLNTVKNLVLSHNNLSG----VLPQCLGNFSDELSVLDLQGNNFFGT----IPDTFI  112 (456)
Q Consensus        42 ~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~~L~~L~Ls~n~i~~~----~~~~~~  112 (456)
                      ++|+.||+++|++++.. ...+..+++++.|+|++|.++.    .++..+...+ +|++|||++|.|+..    +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998643 3456778999999999999974    2345566777 899999999998632    222332


Q ss_pred             -CCCCccEEeccCCcCccc----CCccccCCCCCcEEeCcCCcCCcCCC-------------------------------
Q 038396          113 -KESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDTFP-------------------------------  156 (456)
Q Consensus       113 -~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~-------------------------------  156 (456)
                       ...+|++|++++|++++.    ++..+..+++|++|++++|.++....                               
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             235899999999999753    45567889999999999998753100                               


Q ss_pred             --ccccCCCCCCEEEccCCccccc-----------CCC----------CC----------CccCCCCccEEecccccCcC
Q 038396          157 --SWLGTIPNLNVLILRSNKFYGI-----------IKE----------PR----------TDCRFSKLHIIDLSNNRFTG  203 (456)
Q Consensus       157 --~~~~~l~~L~~L~L~~n~l~~~-----------~~~----------~~----------~~~~l~~L~~L~ls~n~l~~  203 (456)
                        ..+.....++.++++++.....           .+.          ..          .....+.++.+++++|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence              0112235666777666543210           000          00          01245678899999987642


Q ss_pred             C----CChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCc
Q 038396          204 K----LPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR  279 (456)
Q Consensus       204 ~----~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  279 (456)
                      .    ...........++.++++++.+........                       .......+.++.+++++|.++.
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~-----------------------~~~l~~~~~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-----------------------CRVLRAKESLKELSLAGNELGD  297 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-----------------------HHHHHHCTTCCEEECTTCCCHH
T ss_pred             cccchhhcccccccccccccccccccccccccccc-----------------------cccccccccccccccccccccc
Confidence            1    111223345678888888775522111000                       0001124568999999999875


Q ss_pred             cCchhh-----hccCCCCeEeCCCccccccCCc----cccCCCCCCeeeCCCCccccc----Cchhhh-cCCCCCEEecc
Q 038396          280 VIPTSI-----ANLKGLQVLNLDNNNLQGHIPS----CLGNLTNLESLDLSNNRFSGQ----IPQQLV-EFTFLEFFDVS  345 (456)
Q Consensus       280 ~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~Ls~N~l~~~----~~~~l~-~l~~L~~L~ls  345 (456)
                      .....+     .....|+.+++++|.++.....    .+...++|++|+|++|++++.    ++..+. ..+.|+.|+++
T Consensus       298 ~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls  377 (460)
T d1z7xw1         298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  377 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECC
Confidence            333222     2346899999999998855433    334667999999999999753    333343 46789999999


Q ss_pred             CCcCccc----CCCC-CCCCCCCCcccCCCCC
Q 038396          346 DNYLTGA----IPLG-KQFATFDNTSFDGNSG  372 (456)
Q Consensus       346 ~N~l~~~----~p~~-~~~~~l~~~~~~~n~~  372 (456)
                      +|.++..    ++.. ...++++.+++.+|+.
T Consensus       378 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence            9999742    1111 2346778888888863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.1e-17  Score=147.33  Aligned_cols=84  Identities=17%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             ccccEEEccCC-CCCccCchhhhccCCCCeEeCCCc-cccccCCccccCCCCCCeeeCCCCcccc-cCchhhhcCCCCCE
Q 038396          265 DILTGIILSSN-RFDRVIPTSIANLKGLQVLNLDNN-NLQGHIPSCLGNLTNLESLDLSNNRFSG-QIPQQLVEFTFLEF  341 (456)
Q Consensus       265 ~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~  341 (456)
                      ++|++|++++| .+++.....+..+++|++|++++| .+++.....++.+++|++|+++++ ++. .++.....+++|+ 
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~-  252 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ-  252 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE-
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc-
Confidence            45777777765 355555566777777888888774 566666666777778888888776 332 2222223455543 


Q ss_pred             EeccCCcCccc
Q 038396          342 FDVSDNYLTGA  352 (456)
Q Consensus       342 L~ls~N~l~~~  352 (456)
                        +..++++..
T Consensus       253 --i~~~~ls~~  261 (284)
T d2astb2         253 --INCSHFTTI  261 (284)
T ss_dssp             --ESCCCSCCT
T ss_pred             --ccCccCCCC
Confidence              455666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-16  Score=144.38  Aligned_cols=203  Identities=21%  Similarity=0.212  Sum_probs=121.6

Q ss_pred             CcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396           93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR  171 (456)
Q Consensus        93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  171 (456)
                      +..+.++...+..... ......+|++|+++++.++.. +...+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            4455555444432211 122334566666666655432 23345566666666666666665555566666666777666


Q ss_pred             CC-cccccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396          172 SN-KFYGIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL  249 (456)
Q Consensus       172 ~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (456)
                      ++ .++...-.. ....+++|++|+++++. ++.    ..+..                                     
T Consensus       104 ~c~~itd~~l~~-l~~~~~~L~~L~ls~c~~~~~----~~~~~-------------------------------------  141 (284)
T d2astb2         104 GCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTE----KHVQV-------------------------------------  141 (284)
T ss_dssp             TCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCH----HHHHH-------------------------------------
T ss_pred             ccccccccccch-hhHHHHhcccccccccccccc----ccchh-------------------------------------
Confidence            64 332110000 01345677777777653 220    00000                                     


Q ss_pred             EeeccCcccccccccccccEEEccCC--CCCcc-CchhhhccCCCCeEeCCCc-cccccCCccccCCCCCCeeeCCCC-c
Q 038396          250 IMNSKGRMMTYNKIPDILTGIILSSN--RFDRV-IPTSIANLKGLQVLNLDNN-NLQGHIPSCLGNLTNLESLDLSNN-R  324 (456)
Q Consensus       250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N-~  324 (456)
                               .....++.|+.|+++++  .++.. +......+++|++|++++| .+++.....+..+++|++|+|++| .
T Consensus       142 ---------~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~  212 (284)
T d2astb2         142 ---------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  212 (284)
T ss_dssp             ---------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             ---------hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCC
Confidence                     00011244777777764  23332 2334467899999999996 578778888999999999999995 6


Q ss_pred             ccccCchhhhcCCCCCEEeccCC
Q 038396          325 FSGQIPQQLVEFTFLEFFDVSDN  347 (456)
Q Consensus       325 l~~~~~~~l~~l~~L~~L~ls~N  347 (456)
                      +++.....+.++++|+.|+++++
T Consensus       213 i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         213 IIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CChHHHHHHhcCCCCCEEeeeCC
Confidence            87776677889999999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=8.4e-16  Score=119.66  Aligned_cols=101  Identities=29%  Similarity=0.385  Sum_probs=54.1

Q ss_pred             EEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCC
Q 038396           46 LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN  125 (456)
Q Consensus        46 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N  125 (456)
                      .|++++|+++ .++ .+..+++|++|++++|.++ .+|..+..++ +|++|++++|.|+.. | .+..+++|++|++++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~-~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALR-CLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhh-ccccccccccccccc-C-ccccccccCeEECCCC
Confidence            4555555555 222 2555566666666666665 4555555555 566666666665532 2 3555555556666555


Q ss_pred             cCcccC-CccccCCCCCcEEeCcCCcCC
Q 038396          126 LFQGRI-PRSLVNCSKLEFLDLGNNQIS  152 (456)
Q Consensus       126 ~l~~~~-~~~l~~l~~L~~L~Ls~n~i~  152 (456)
                      ++++.. ...+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            555322 134555555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-16  Score=129.10  Aligned_cols=130  Identities=16%  Similarity=0.114  Sum_probs=82.7

Q ss_pred             hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396           62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  141 (456)
Q Consensus        62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  141 (456)
                      |.+...+++|+|++|+|+ .++..+..+. +|++|++++|.|+..  +.|..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~-~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLD-QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTT-CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccc-cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            455667777777777776 4555455555 677777777777744  246677777777777777775555555667777


Q ss_pred             cEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCcccccCCC-CCCccCCCCccEEe
Q 038396          142 EFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKE-PRTDCRFSKLHIID  195 (456)
Q Consensus       142 ~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~  195 (456)
                      ++|++++|.++.... ..+..+++|++|++++|.++..... ...+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777777763321 3456677777777777776544210 01124566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2e-15  Score=117.47  Aligned_cols=104  Identities=27%  Similarity=0.344  Sum_probs=71.0

Q ss_pred             CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396           69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  148 (456)
Q Consensus        69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  148 (456)
                      |.|+|++|+++ .++ .+..+. +|++|++++|+|+ .+|..|..+++|++|++++|++++ +| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~-~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCC-CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            46777777777 444 366666 6777777777777 455667777777777777777773 33 467777777777777


Q ss_pred             CcCCcCC-CccccCCCCCCEEEccCCccccc
Q 038396          149 NQISDTF-PSWLGTIPNLNVLILRSNKFYGI  178 (456)
Q Consensus       149 n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~  178 (456)
                      |+|+... ...+..+++|+.|++++|+++..
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            7776432 24566677777777777776644

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.1e-16  Score=126.63  Aligned_cols=123  Identities=15%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             CCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396           43 ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL  122 (456)
Q Consensus        43 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  122 (456)
                      +++.|+|++|+|+ .++..+..+++|+.|++++|.|+ .++ .+..++ +|++|++++|+++...+..+..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~-~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCc-chhhhhcccccccCCCcccccccccccccee
Confidence            4445555555554 22334445555555555555555 232 244444 5555555555555444444445555556666


Q ss_pred             cCCcCcccCC-ccccCCCCCcEEeCcCCcCCcCC---CccccCCCCCCEEE
Q 038396          123 SHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTF---PSWLGTIPNLNVLI  169 (456)
Q Consensus       123 s~N~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~  169 (456)
                      ++|+++.... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6555553211 24555566666666666654221   11345566666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=2.6e-16  Score=146.41  Aligned_cols=96  Identities=17%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             CChhhhhhcCCCCCEEEccCCCCCCC--CcCccCCCCCCCCCcEEEccCCccccc----------cchhhhcCCCCCeee
Q 038396            5 IPKWLLDPSMQYLNALNLSHNLLTSS--NNLQGPLPVPPPETILYLVSNNSLTGE----------IPSWICNLNTVKNLV   72 (456)
Q Consensus         5 ip~~~~~~~l~~L~~L~Ls~N~l~~~--~~l~~~~~~~~~~L~~L~ls~n~l~~~----------~~~~~~~l~~L~~L~   72 (456)
                      +...+.+  ...|++|+|++|.|...  ..+.. .....+.++.++++++.....          +...+..+++|++|+
T Consensus        23 l~~~L~~--~~~l~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          23 VFAVLLE--DDSVKEIVLSGNTIGTEAARWLSE-NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             TSHHHHH--CSCCCEEECTTSEECHHHHHHHHH-TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHhh--CCCCCEEECcCCcCCHHHHHHHHH-HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            3344555  66677777777766410  01111 112245666666665543211          112234455666666


Q ss_pred             cccCcCccc----cChhhhhCCCCCcEEEccCCccc
Q 038396           73 LSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFF  104 (456)
Q Consensus        73 Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~  104 (456)
                      |++|.+++.    +...+...+ +|++|++++|.+.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~n~l~  134 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLG  134 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCH
T ss_pred             ccccccccccccchhhhhcccc-cchheeccccccc
Confidence            666665432    222233344 5666666666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=3e-16  Score=145.99  Aligned_cols=244  Identities=18%  Similarity=0.199  Sum_probs=131.1

Q ss_pred             hhhhcCCCCCeeecccCcCccccCh----hhhhCCCCCcEEEccCCcccee----------CCccccCCCCccEEeccCC
Q 038396           60 SWICNLNTVKNLVLSHNNLSGVLPQ----CLGNFSDELSVLDLQGNNFFGT----------IPDTFIKESRLGVIDLSHN  125 (456)
Q Consensus        60 ~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~~L~~L~Ls~n~i~~~----------~~~~~~~l~~L~~L~Ls~N  125 (456)
                      ..+.....|++|+|++|.+......    .+.... +|+.|+++++.....          +...+...++|++|++++|
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCC-CCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3455556666666666655432222    222333 566666665543211          1122344556666666666


Q ss_pred             cCccc----CCccccCCCCCcEEeCcCCcCCcCCCc-------------cccCCCCCCEEEccCCcccccCCCCC--Ccc
Q 038396          126 LFQGR----IPRSLVNCSKLEFLDLGNNQISDTFPS-------------WLGTIPNLNVLILRSNKFYGIIKEPR--TDC  186 (456)
Q Consensus       126 ~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~  186 (456)
                      .++..    +...+..+++|++|++++|.++.....             .....+.|+.+.+++|++.......+  ...
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            66532    222344556666666666665421100             01234566666666666542211110  012


Q ss_pred             CCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccccc
Q 038396          187 RFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI  266 (456)
Q Consensus       187 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (456)
                      ..+.|++|++++|.+...-....+.                                               ......+.
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~-----------------------------------------------~~l~~~~~  216 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLL-----------------------------------------------EGLAYCQE  216 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHH-----------------------------------------------TTGGGCTT
T ss_pred             hhhhhcccccccccccccccccchh-----------------------------------------------hhhcchhh
Confidence            3456666777666654100000000                                               00011345


Q ss_pred             ccEEEccCCCCCcc----CchhhhccCCCCeEeCCCccccccCCcc----ccC--CCCCCeeeCCCCccccc----Cchh
Q 038396          267 LTGIILSSNRFDRV----IPTSIANLKGLQVLNLDNNNLQGHIPSC----LGN--LTNLESLDLSNNRFSGQ----IPQQ  332 (456)
Q Consensus       267 L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~--l~~L~~L~Ls~N~l~~~----~~~~  332 (456)
                      |+.|++++|.++..    +...+..+++|++|+|++|.+++.....    +..  .+.|++|++++|+|...    +...
T Consensus       217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~  296 (344)
T d2ca6a1         217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  296 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHH
Confidence            78888888877543    3345677888999999999887543332    322  35789999999988642    2333


Q ss_pred             hh-cCCCCCEEeccCCcCcc
Q 038396          333 LV-EFTFLEFFDVSDNYLTG  351 (456)
Q Consensus       333 l~-~l~~L~~L~ls~N~l~~  351 (456)
                      +. +.++|+.|++++|++..
T Consensus       297 l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         297 IDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHCTTCCEEECTTSBSCT
T ss_pred             HHccCCCCCEEECCCCcCCC
Confidence            42 57889999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=7.9e-16  Score=130.52  Aligned_cols=145  Identities=22%  Similarity=0.262  Sum_probs=103.2

Q ss_pred             CcEEEccCC--ccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396           44 TILYLVSNN--SLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID  121 (456)
Q Consensus        44 L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  121 (456)
                      .+.++++..  .+. .++..+..+++|++|+|++|.|+ .++ .+..+. +|++|++++|.|+ .++..+..+++|++|+
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~-~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHT-TCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCc-cccChhhcccccc-cccccccccccccccc
Confidence            444455433  233 45677888899999999999988 454 477887 8999999999887 4455555566788999


Q ss_pred             ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCcccccCCCCCC--------ccCCCCcc
Q 038396          122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEPRT--------DCRFSKLH  192 (456)
Q Consensus       122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~~~l~~L~  192 (456)
                      +++|+++..  ..+..+++|++|++++|.|+.... ..+..+++|+.|++++|++....+....        ...+++|+
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            999988843  347778889999999998874322 4678888899999999887765443221        23466777


Q ss_pred             EEe
Q 038396          193 IID  195 (456)
Q Consensus       193 ~L~  195 (456)
                      .||
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=1.3e-15  Score=129.09  Aligned_cols=123  Identities=20%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396           41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI  120 (456)
Q Consensus        41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  120 (456)
                      +++|++|++++|+|+. ++ .+..+++|++|++++|.++ .+|....... +|++|++++|.++..  ..+..+++|++|
T Consensus        47 L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~-~L~~L~l~~N~i~~l--~~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD-TLEELWISYNQIASL--SGIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHH-HCCEEECSEEECCCH--HHHHHHHHSSEE
T ss_pred             ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccc-ccccccccccccccc--cccccccccccc
Confidence            6778888888888874 33 4788888888888888887 5665555444 688888888888743  346777888888


Q ss_pred             eccCCcCcccCC-ccccCCCCCcEEeCcCCcCCcCCCcc----------ccCCCCCCEEE
Q 038396          121 DLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSW----------LGTIPNLNVLI  169 (456)
Q Consensus       121 ~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~----------~~~l~~L~~L~  169 (456)
                      ++++|+++.... ..+..+++|++|++++|.+....+..          +..+|+|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888888874322 45778888888888888876433321          45688888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-13  Score=110.27  Aligned_cols=110  Identities=17%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             ccEEEccCCCCCccCchhhhccCCCCeEeCCCc-cccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396          267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNN-NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS  345 (456)
Q Consensus       267 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls  345 (456)
                      .+.++.+++.+.. .|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4456666666655 3455666677777777655 3665555667777777777777777776666667777777777777


Q ss_pred             CCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396          346 DNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP  377 (456)
Q Consensus       346 ~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  377 (456)
                      +|+++...+.......+..+++.+||+.|+|.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCch
Confidence            77776433333334456666677777776664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-12  Score=105.26  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             CCeeecccCcCccccChhhhhCCCCCcEEEccCC-ccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396           68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN-NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  146 (456)
Q Consensus        68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  146 (456)
                      .+.++++++.+. ..|..+..++ +|++|++++| .++.+.+.+|.++++|+.|++++|+++.+.+.+|..+++|++|+|
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            344555555554 3444444444 5555555433 355444455555555555555555555555555555555555555


Q ss_pred             cCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396          147 GNNQISDTFPSWLGTIPNLNVLILRSNKF  175 (456)
Q Consensus       147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l  175 (456)
                      ++|+|+...++.+.. .+|+.|+|++|.+
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCcc
Confidence            555555333333322 2455555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.4e-10  Score=90.21  Aligned_cols=68  Identities=24%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             hhhhcCCCCCeeecccCcCccc--cChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCc
Q 038396           60 SWICNLNTVKNLVLSHNNLSGV--LPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ  128 (456)
Q Consensus        60 ~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~  128 (456)
                      ..+..+++|++|+|++|+|++.  ++..+..++ +|+.|++++|.|+...+-.+.....|+.|++++|++.
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~-~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHST-TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCC-cccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3334455555555555555522  122334444 4555555555555332222223334455555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.4e-10  Score=89.46  Aligned_cols=86  Identities=26%  Similarity=0.222  Sum_probs=41.8

Q ss_pred             CCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeC--CccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396           66 NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  143 (456)
Q Consensus        66 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  143 (456)
                      ..+..++..++... .++.....++ .|++|+|++|+|+...  +..+..+++|+.|++++|+++...+-.+....+|+.
T Consensus        42 ~~~~~l~~~~~~~~-~l~~~~~~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          42 NIDVVLNRRSSMAA-TLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TCCCCTTSHHHHHH-HHHHHHHHCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             cchhhcchhhhHhh-hhHHHHHhCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            33333444443333 3333334454 5666666666666432  233445566666666666665332222223344555


Q ss_pred             EeCcCCcCCc
Q 038396          144 LDLGNNQISD  153 (456)
Q Consensus       144 L~Ls~n~i~~  153 (456)
                      |++++|.+..
T Consensus       120 L~L~~Npl~~  129 (162)
T d1koha1         120 LWLDGNSLSD  129 (162)
T ss_dssp             CCCTTSTTSS
T ss_pred             eecCCCCcCc
Confidence            6666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.12  E-value=1.1e-06  Score=70.91  Aligned_cols=42  Identities=21%  Similarity=0.392  Sum_probs=18.3

Q ss_pred             hhcCCCCCeeecccCcCccc----cChhhhhCCCCCcEEEccCCccc
Q 038396           62 ICNLNTVKNLVLSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFF  104 (456)
Q Consensus        62 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~  104 (456)
                      +...+.|++|+|++|.+.+.    +...+...+ .|++|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcc-cccceeeehhhcc
Confidence            33444555555555555421    112222233 4555555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=6.7e-07  Score=72.21  Aligned_cols=87  Identities=13%  Similarity=0.158  Sum_probs=42.5

Q ss_pred             cCCCCCeeecccC-cCccc----cChhhhhCCCCCcEEEccCCccceeC----CccccCCCCccEEeccCCcCccc----
Q 038396           64 NLNTVKNLVLSHN-NLSGV----LPQCLGNFSDELSVLDLQGNNFFGTI----PDTFIKESRLGVIDLSHNLFQGR----  130 (456)
Q Consensus        64 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----  130 (456)
                      +.+.|++|+|+++ .++..    +-.++.... .|++|++++|.+....    ...+...+.|++|++++|.++..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~-~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCC-ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4466777777653 35422    122333333 5667777666665321    12233345555556655555531    


Q ss_pred             CCccccCCCCCcEEeCcCCcC
Q 038396          131 IPRSLVNCSKLEFLDLGNNQI  151 (456)
Q Consensus       131 ~~~~l~~l~~L~~L~Ls~n~i  151 (456)
                      +..++...++|++|++++|.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHhCCcCCEEECCCCcC
Confidence            122344445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.67  E-value=3.2e-06  Score=68.08  Aligned_cols=15  Identities=13%  Similarity=0.386  Sum_probs=7.0

Q ss_pred             CCCccEEeccCCcCc
Q 038396          114 ESRLGVIDLSHNLFQ  128 (456)
Q Consensus       114 l~~L~~L~Ls~N~l~  128 (456)
                      .+.++.+++++|.++
T Consensus        73 ~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          73 NNTLKSLNVESNFIS   87 (166)
T ss_dssp             CSSCCEEECCSSCCC
T ss_pred             cccchhhhhcccccc
Confidence            344444454444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.59  E-value=1.7e-05  Score=63.56  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=61.1

Q ss_pred             CCCCcEEEccC-Cccccc----cchhhhcCCCCCeeecccCcCccc----cChhhhhCCCCCcEEEccCCcccee----C
Q 038396           41 PPETILYLVSN-NSLTGE----IPSWICNLNTVKNLVLSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFFGT----I  107 (456)
Q Consensus        41 ~~~L~~L~ls~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~----~  107 (456)
                      .+.|+.|++++ +.++..    +..++...++|++|++++|.++..    +...+.... .++.+++++|.++..    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcc-cchhhhhccccccchhHHHH
Confidence            34556666654 334322    233455677788888888877643    223344444 788888888877632    2


Q ss_pred             CccccCCCCccEEec--cCCcCcc----cCCccccCCCCCcEEeCcCCc
Q 038396          108 PDTFIKESRLGVIDL--SHNLFQG----RIPRSLVNCSKLEFLDLGNNQ  150 (456)
Q Consensus       108 ~~~~~~l~~L~~L~L--s~N~l~~----~~~~~l~~l~~L~~L~Ls~n~  150 (456)
                      ...+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            234455566665444  3455543    233344556666666666554