Citrus Sinensis ID: 038400
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.839 | 0.432 | 0.335 | 2e-52 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.591 | 0.301 | 0.360 | 5e-48 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.565 | 0.293 | 0.395 | 3e-47 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.599 | 0.304 | 0.355 | 9e-46 | |
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.613 | 0.216 | 0.353 | 1e-40 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.861 | 0.411 | 0.294 | 1e-37 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.884 | 0.491 | 0.260 | 3e-25 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.492 | 0.272 | 0.276 | 5e-23 | |
| Q9SX38 | 857 | Putative disease resistan | no | no | 0.900 | 0.529 | 0.253 | 1e-22 | |
| P59584 | 910 | Disease resistance protei | no | no | 0.896 | 0.496 | 0.246 | 2e-22 |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 236/492 (47%), Gaps = 69/492 (14%)
Query: 1 MKCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------L 52
M+ AF + + +PNL+ IG+EIVKKCGG+PLA + LG +L +E +WE+ L
Sbjct: 321 MQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNL 380
Query: 53 EQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNE 112
Q ES ILP LRLSY+ LP L+QC YC++FPKD +L+ FWMAHG L S N
Sbjct: 381 PQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKG-NL 439
Query: 113 ELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQ 172
ELED+G EL RSFF ++ + G +FKMHDL+HDLA
Sbjct: 440 ELEDVGNEVWNELYLRSFFQEIE---VESGKTYFKMHDLIHDLA---------------- 480
Query: 173 SIPKRVRHLSFAAANASRKDFSSLLSDL-GRVRTIVFSTDDEKISQSFVESCISKSQFLR 231
S +AN S + + ++ G + +I F+ ++ S+ S + K LR
Sbjct: 481 --------TSLFSANTSSSNIREINANYDGYMMSIGFA----EVVSSYSPSLLQKFVSLR 528
Query: 232 VLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELEEL 279
VLNL S + P IG+L H+RYLDLSGN +I+ LPK + YC L L
Sbjct: 529 VLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCL 588
Query: 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDL----EHLFEEIDQLRV 335
PK L SLR L SL + R +G L CL C + H E+ L +
Sbjct: 589 PKQTSKLGSLRNLLLDG--CSLTSTPPR-IGLLTCLKSLSCFVIGKRKGHQLGELKNLNL 645
Query: 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH- 394
++SI R+ A + S + C S DL+ + E + +PH
Sbjct: 646 YGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEV----LEALKPHS 701
Query: 395 -LRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFI-LG 452
L+ + I + LP W+ Q + ++ I C N LP +L LE+L + G
Sbjct: 702 NLKYLEINGFGG-IRLPDWMNQSVLKNVVSIRIRGCENCSCLP-PFGELPCLESLELHTG 759
Query: 453 CPKLSSLSEDMH 464
+ + +++H
Sbjct: 760 SADVEYVEDNVH 771
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 189/374 (50%), Gaps = 76/374 (20%)
Query: 1 MKCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------L 52
M+ AF ++++ +PNL+ IG+EIVKKCGG+PLA + LG LL +E +WE+ L
Sbjct: 323 MQRAFGQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSL 382
Query: 53 EQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNE 112
Q ES ILP LRLSY+ LP L+QC AYC++FPKD +L+ WMAHG L S N
Sbjct: 383 PQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKG-NL 441
Query: 113 ELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQ 172
ELED+G EL RSFF ++ G +FK+HDL+HDLA ++ C
Sbjct: 442 ELEDVGNEVWNELYLRSFFQEIE---AKSGNTYFKIHDLIHDLA-----TSLFSASASCG 493
Query: 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRV 232
+I R ++ KD+ +S I F+ + S+ S + K LRV
Sbjct: 494 NI----REINV-------KDYKHTVS-------IGFAA----VVSSYSPSLLKKFVSLRV 531
Query: 233 LNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
LNLS S +E P IG+L H+RYLDLS N+ + LP+ + L+
Sbjct: 532 LNLSYSKLEQLPSSIGDLLHLRYLDLSCNN-FRSLPERLCKLQ----------------- 573
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
+L+ L + C L L ++ +L LR L + CP L S PP
Sbjct: 574 ------------------NLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCP-LTSTPP 614
Query: 353 AIKYLSSLETLFLY 366
I L+ L+TL +
Sbjct: 615 RIGLLTCLKTLGFF 628
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 177/339 (52%), Gaps = 54/339 (15%)
Query: 1 MKCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------L 52
M+ AF + + +PNL+ IG+EIVKK GG+PLA + LG +L +E WE+ L
Sbjct: 322 MQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNL 381
Query: 53 EQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNE 112
Q ES ILP LRLSY+QLP LKQC AYC++FPKD + L+ WMAHG L S N
Sbjct: 382 PQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKG-NM 440
Query: 113 ELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQ 172
ELED+G KEL RSFF ++ + G +FKMHDL+HDLA N+
Sbjct: 441 ELEDVGDEVWKELYLRSFFQEIE---VKDGKTYFKMHDLIHDLA-----TSLFSANTSSS 492
Query: 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRV 232
+I + +H ++ ++S +G + F T +E IS LRV
Sbjct: 493 NIREINKH-----------SYTHMMS-IGFAEVVFFYTLPP------LEKFIS----LRV 530
Query: 233 LNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELEELP 280
LNL +S P IG+L H+RYL+L G S ++ LPK + YC +L LP
Sbjct: 531 LNLGDSTFNKLPSSIGDLVHLRYLNLYG-SGMRSLPKQLCKLQNLQTLDLQYCTKLCCLP 589
Query: 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISG 319
K+ L SLR L Q SL R +GSL CL G
Sbjct: 590 KETSKLGSLRNLLLDGSQ-SLTCMPPR-IGSLTCLKTLG 626
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 186/368 (50%), Gaps = 66/368 (17%)
Query: 4 AFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------LEQK 55
AF + + P L++IG+EIVKKCGG+PLA + LG LL +E +WE+ L Q
Sbjct: 324 AFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQD 383
Query: 56 ESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELE 115
E+ +LP LRLSY+ LP L+QC AYC++FPKD + L+ WMAH L S N ELE
Sbjct: 384 ENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKG-NMELE 442
Query: 116 DIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQSIP 175
D+G EL RSFF ++ + G +FKMHDL+HDLA + +
Sbjct: 443 DVGNEVWNELYLRSFFQEIE---VKSGKTYFKMHDLIHDLATSMFSA---------SASS 490
Query: 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNL 235
+ +R ++ +D ++++ + +I FS ++ S+ S + LRVLNL
Sbjct: 491 RSIRQINV----KDDEDMMFIVTNYKDMMSIGFS----EVVSSYSPSLFKRFVSLRVLNL 542
Query: 236 SESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALT 295
S S E P +G+L H+RYLDLSGN KI LPK + C
Sbjct: 543 SNSEFEQLPSSVGDLVHLRYLDLSGN-KICSLPKRL-C---------------------- 578
Query: 296 TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK 355
L +L+ L + C L L ++ +L LR L + CP L S+PP I
Sbjct: 579 ------------KLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCP-LTSMPPRIG 625
Query: 356 YLSSLETL 363
L+ L+TL
Sbjct: 626 LLTCLKTL 633
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 175/345 (50%), Gaps = 36/345 (10%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKESG----ILPILRLSYYQLPPH 73
IG+ I ++C G+PLA RA+ S L + DW + + S ILP+L+LSY LPP
Sbjct: 358 IGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSSYTNSILPVLKLSYDSLPPQ 417
Query: 74 LKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHD 133
LK+C A CSIFPK + FD LV WMA LL + LEDIG YL +L+++SFF
Sbjct: 418 LKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQR 477
Query: 134 LTFGMLGMGMFFFKMHDLMHDLALLVAKDE-FLVVNSDCQSIPKRVRHLSFAAANASRKD 192
L M F MHDLM+DLA V+ D F + + + IP RH SF+ +
Sbjct: 478 LDITMTS-----FVMHDLMNDLAKAVSGDFCFRLEDDNIPEIPSTTRHFSFSRSQCDASV 532
Query: 193 FSSLLSDLGRVRTIV-----FSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKI 247
+ +RTI+ S + ++++ + ++ LR+L+LS I P+ +
Sbjct: 533 AFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSL 592
Query: 248 GNLKHMRYLDLSGNSKIKKLPKSI------------YCLELEELPKDIRHLTSLRAFALT 295
LK +RYLDLS ++KIK+LP+ + C +L LPK I L +LR L
Sbjct: 593 KGLKLLRYLDLS-STKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLV 651
Query: 296 TKQKSLQESGIRSLGSLRCLT------ISGCGDLEHLFEEIDQLR 334
GI+ L SL+ L+ +SG G H +E+ LR
Sbjct: 652 GTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAG--LHELKELSHLR 694
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 143/486 (29%), Positives = 223/486 (45%), Gaps = 52/486 (10%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------LEQKESGILPILRLSYYQ 69
+ E IV KC G+PLAV+ LG +L +WE L +S +LP+LR+SYY
Sbjct: 362 LAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYY 421
Query: 70 LPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRS 129
LP HLK+C AYCSIFPK + F+ +V WMA G LQ ++ LE++G Y EL SRS
Sbjct: 422 LPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRS 481
Query: 130 FFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQ-SIPKRVRHLSFAAANA 188
+L + MHD +++LA + + C+ + +R R+LS+ N
Sbjct: 482 --------LLQKTKTRYIMHDFINELAQFASGEFSSKFEDGCKLQVSERTRYLSYLRDNY 533
Query: 189 SRKDFSSLLSDLGRVRT-----IVFSTDDEKISQSFVESCISKSQFLRVLNLSESAI-EV 242
+ L ++ +RT + S+ + Q E + LRVL+LS I +
Sbjct: 534 AEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARL 593
Query: 243 CPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELEELPKDIRHLTSLR 290
P N+ H R+LDLS ++++KLPKS+ YC L+ELP DI +L +LR
Sbjct: 594 PPDFFKNISHARFLDLS-RTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLR 652
Query: 291 AFALTT---KQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLR-TLSIVCCPR 346
L +Q + ++SL +L +S E+ L L L IV R
Sbjct: 653 YLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDGSR--ISELGGLHDLHGKLKIVELQR 710
Query: 347 LISLPPAI-------KYLSSLETLFLYKCESLDLNIN-MEMEGEGSNHDRKNTRPHLRRV 398
++ + A K+L ++ ++ S + N N + E ++ H+ ++
Sbjct: 711 VVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKL 770
Query: 399 VIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458
I E + P WL S + + + +C +LP SL L L+ L I G L S
Sbjct: 771 AI-ERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLP-SLGQLPCLKELHISGMVGLQS 828
Query: 459 LSEDMH 464
+ +
Sbjct: 829 IGRKFY 834
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 241/592 (40%), Gaps = 146/592 (24%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL---------------EQKESGILPI 62
+G+E+V CGG+PLAV+ALG LL +W+ + + + + I
Sbjct: 352 MGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRI 411
Query: 63 LRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYL 122
L LSY LP HLK C + FP+D ++SL +W A G+ +ED G YL
Sbjct: 412 LSLSYEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGST----IEDSGEYYL 467
Query: 123 KELLSRSF-FHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDE-FL--VVNSDCQSI---- 174
+EL+ R+ D + L + +MHD+M ++ L AK+E FL +++ C S
Sbjct: 468 EELVRRNLVIADDNY--LSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQ 525
Query: 175 -PKRVRHLSFAAANASRKDFSSL-LSDLGRVRTIVFS--TDDEKISQSFVESCISKSQFL 230
P R R LS + A F L + +VR+++ +D I + S L
Sbjct: 526 SPSRSRRLSIHSGKA----FHILGHKNKTKVRSLIVPRFEEDYWIRSA---SVFHNLTLL 578
Query: 231 RVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYC----------LELEE 278
RVL+LS E P IG L H+RYL L +K+ LP ++ ++ EE
Sbjct: 579 RVLDLSWVKFEGGKLPCSIGGLIHLRYLSLY-EAKVSHLPSTMRNLKLLLYLNLRVDTEE 637
Query: 279 ---LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335
+P ++ + LR +L K + + L +L L G ++ ++
Sbjct: 638 PIHVPNVLKEMIQLRYLSLPLKMDDKTKLELGDLVNLEYLY--GFSTQHSSVTDLLRMTK 695
Query: 336 LRTLSIVCCPR--LISLPPAIKYLSSLETL-FLYKCES----------LDLNINMEMEGE 382
LR L++ R +L +++ L +LETL FL+ E+ LD I+++ G
Sbjct: 696 LRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGL 755
Query: 383 GSNH----DRKNTRPHL------------------------------RRVVIG------- 401
D+ PHL R+ +G
Sbjct: 756 AVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSK 815
Query: 402 ---------EITQLLELPQWLL-QGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFIL 451
EI++ EL +W++ +GS L+ L I DC LP LK
Sbjct: 816 GGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLK----------- 864
Query: 452 GCPKLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNL 503
++T+LK L I G + P GED+ K+ HIP V
Sbjct: 865 -------------YITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQF 903
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 142/289 (49%), Gaps = 41/289 (14%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQ---------------KESGILPI 62
+G++++K CGG+PLAV+ LG LL HDW+ L + S + +
Sbjct: 353 MGKQMIKYCGGLPLAVKVLGGLLAAKYTFHDWKRLSENIGCHIVGRTDFSDGNNSSVYHV 412
Query: 63 LRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQ-SHNKNEELEDIGMRY 121
L LS+ +LP +LK C Y + FP+D+ L W A G+L+ H + + D+G Y
Sbjct: 413 LSLSFEELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESY 472
Query: 122 LKELLSRSFFHDLTFGMLGMGMFFFK---MHDLMHDLALLVAKDEFLV---------VNS 169
++EL+ R ++ + F+ +HD+M ++ LL AK+E V NS
Sbjct: 473 IEELVRR----NMVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASILPPTANS 528
Query: 170 DCQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQF 229
+R F + N + S +++ ++++++ ++ + S + S + +
Sbjct: 529 QYPGTSRR-----FVSQNPTTLHVSRDINN-PKLQSLLIVWENRRKSWKLLGSSFIRLEL 582
Query: 230 LRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL 276
LRVL+L ++ E P IG L H+RYL+L +++ +LP S+ L L
Sbjct: 583 LRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDL-ARVSRLPSSLGNLRL 630
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 143/563 (25%), Positives = 240/563 (42%), Gaps = 109/563 (19%)
Query: 2 KCAFKEERDKHPNLIK----IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWE------- 50
K + + P L+K IG++IV +CGG+PLA+ LG LL + ++W+
Sbjct: 334 KISLSGRENIEPMLVKKMEEIGKQIVVRCGGLPLAITVLGGLLATKSTWNEWQRVCENIK 393
Query: 51 -YLEQKESG-------ILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAH 102
Y+ S + +L LSY LPPH+KQC Y + +P+DY +LV + +A
Sbjct: 394 SYVSNGGSSNGSKNMLVADVLCLSYEYLPPHVKQCFLYFAHYPEDYEVHVGTLVSYCIAE 453
Query: 103 GLLQSHNKNEE---LEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLV 159
G++ E +ED+G YL+EL+ RS ++ + +MHDLM ++ L
Sbjct: 454 GMVMPVKHTEAGTTVEDVGQDYLEELVKRSMVMVGRRDIVTSEVMTCRMHDLMREVCLQK 513
Query: 160 AKDEFLVVNSDCQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSF 219
AK E V D + + +S + N SR R+ + +E +S
Sbjct: 514 AKQESFVQVIDSRDQDEAEAFISLST-NTSR-----------RISVQLHGGAEEHHIKSL 561
Query: 220 VESCISKSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL- 276
+ K + LRVL+L + IE P +G+L H+R L + + +K+L SI L+L
Sbjct: 562 SQVSFRKMKLLRVLDLEGAQIEGGKLPDDVGDLIHLRNLSVR-LTNVKELTSSIGNLKLM 620
Query: 277 --------------EEL---------PKDIRHLTSLRAFALTTKQKSLQESGIRSLGS-- 311
+L P+D+ +TSLR ++ ++ + SL
Sbjct: 621 ITLDLFVKGQLYIPNQLWDFPVGKCNPRDLLAMTSLRRLSINLSSQNTDFVVVSSLSKVL 680
Query: 312 --LRCLTIS-GCGDLEHLFEEIDQLRVLRTLS----IVCCPRLISLPPAIKYLSSLETLF 364
LR LTI+ C E + +D +++ + + +L LP + S L L
Sbjct: 681 KRLRGLTINVPC---EPMLPPVDVTQLVSAFTNLCELELFLKLEKLPGEQSFSSDLGALR 737
Query: 365 LYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGS----TDT 420
L++C +D + M +E P+L+ +L+L + GS +
Sbjct: 738 LWQCGLVD-DPFMVLE----------KLPNLK---------ILQLFEGSFVGSKLCCSKN 777
Query: 421 LQNL--LIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478
L+NL ++ M L T+ + C KL S+ E + L+ + IG
Sbjct: 778 LENLEEWTVEDGAMMRLV----------TVELKCCNKLKSVPEGTRFLKNLQEVEIGNRT 827
Query: 479 ALSERCKRPTGEDWPKIAHIPQV 501
+ GED+ K+ H+P V
Sbjct: 828 KAFKDKLISGGEDFYKVQHVPCV 850
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 145/588 (24%), Positives = 233/588 (39%), Gaps = 136/588 (23%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL---------------EQKESGILPI 62
+G+E+V CGG+PLAV+ALG LL +W+ + + + + I
Sbjct: 352 MGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVSDNIGSQIVGGSCLDDNSLNSVYRI 411
Query: 63 LRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYL 122
L LSY LP HLK C + + +P+D + L +W A G+ ++D G YL
Sbjct: 412 LSLSYEDLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGST----IQDSGEYYL 467
Query: 123 KELLSRSF-FHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDE-FLVVNSD--CQSI---- 174
+EL+ R+ D + + + +MHD+M ++ L AK+E FL + D C S
Sbjct: 468 EELVRRNLVIADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFLQIIKDPTCTSTINAQ 527
Query: 175 -PKRVRHLSFAAANASRKDFSSLLSDL-GRVRTIVFSTDDEKISQSFVESCISKSQFLRV 232
P R R LS + A F L +VR+++ S +E S LRV
Sbjct: 528 SPSRSRRLSIHSGKA----FHILGHKRNAKVRSLIVSRFEEDFWIRSA-SVFHNLTLLRV 582
Query: 233 LNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPK-------------SIYCLELE 277
L+LS E P IG L H+RYL L G + + LP S++ +L
Sbjct: 583 LDLSWVKFEGGKLPCSIGGLIHLRYLRLYG-AVVSHLPSTMRNLKLLLYLNLSVHNEDLI 641
Query: 278 ELPKDIRHLTSLRAFALTTKQK-------------------SLQESGIRSL---GSLRCL 315
+P ++ + LR ++ K S Q + + L LR L
Sbjct: 642 HVPNVLKEMIELRYLSIPVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNL 701
Query: 316 TISGCG--DLEHLFEEIDQLRVLRTLSIV--------------------------CCPRL 347
T+S + + L + +LR L TL ++ R+
Sbjct: 702 TVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRM 761
Query: 348 ISLPPAIKYLSSLETLFLYKC----------ESLDLNINMEMEGEGSNHDRKN-TRPHLR 396
+P ++ L +FL+ C E L ++++ + R ++
Sbjct: 762 SKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVCSKDGFT 821
Query: 397 RVVIGEITQLLELPQWLLQ-GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPK 455
++ +I++ EL W+++ GS L+ L I DC LP LK
Sbjct: 822 QLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLK--------------- 866
Query: 456 LSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNL 503
++T+LK L I G + P GED+ K+ HIP V
Sbjct: 867 ---------YITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQF 905
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| 255577491 | 860 | leucine-rich repeat containing protein, | 0.974 | 0.570 | 0.466 | 1e-119 | |
| 225441815 | 874 | PREDICTED: putative disease resistance p | 0.956 | 0.551 | 0.445 | 1e-117 | |
| 224120592 | 836 | nbs-lrr resistance protein [Populus tric | 0.918 | 0.553 | 0.452 | 1e-115 | |
| 225456043 | 848 | PREDICTED: putative disease resistance p | 0.942 | 0.560 | 0.441 | 1e-111 | |
| 359491491 | 845 | PREDICTED: disease resistance protein RG | 0.942 | 0.562 | 0.440 | 1e-109 | |
| 225456041 | 853 | PREDICTED: disease resistance protein RG | 0.942 | 0.556 | 0.429 | 1e-108 | |
| 225456045 | 851 | PREDICTED: putative disease resistance p | 0.942 | 0.558 | 0.426 | 1e-107 | |
| 297734263 | 729 | unnamed protein product [Vitis vinifera] | 0.884 | 0.611 | 0.428 | 1e-105 | |
| 225456092 | 849 | PREDICTED: putative disease resistance p | 0.940 | 0.558 | 0.421 | 1e-105 | |
| 356570458 | 857 | PREDICTED: disease resistance protein RG | 0.966 | 0.568 | 0.423 | 1e-103 |
| >gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/527 (46%), Positives = 333/527 (63%), Gaps = 36/527 (6%)
Query: 1 MKCAFKEERDK-HPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY-------- 51
++CAF E ++K +PNL+KIG EIVKKCGG+PLAVR +G+ L+ TDE DW
Sbjct: 343 LRCAFNEGQEKLYPNLVKIGSEIVKKCGGVPLAVRTVGTQLFLKTDEADWNLVKESDIWE 402
Query: 52 LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
L+Q + ILP LR+SY QLP +LKQC A CS+FPKDY F+S L+QFWMAHGLLQS ++
Sbjct: 403 LDQNPNDILPALRISYQQLPSYLKQCFASCSVFPKDYEFNSLKLIQFWMAHGLLQSPDQV 462
Query: 112 EELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDC 171
+ E +G++YLKEL SR FF D+ F FKMHDL+HDLA VA+ E L+ S
Sbjct: 463 QLPEYLGLKYLKELFSRCFFQDIEDCSF---YFVFKMHDLVHDLAQSVAQRESLIPKSGR 519
Query: 172 QSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLR 231
KRVRHL+F KD L DL V+TI+ + +S+S + CIS Q LR
Sbjct: 520 HYSCKRVRHLTFFDPEVLSKDPRKLFHDLDHVQTILIAG----VSKSLAQVCISGFQNLR 575
Query: 232 VLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELEEL 279
VL+L+ S EV PR IG LKH+RYLDL+ N KI++LP SI C ELE L
Sbjct: 576 VLDLAWSTFEVLPRSIGTLKHLRYLDLTNNVKIRRLPSSICNLQSLQTLILSGCEELEGL 635
Query: 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV--LR 337
P++++ + SL +T K + L + I L SLR L I GCG+LEHLF+++ L + LR
Sbjct: 636 PRNMKCMISLSFLWITAKLRFLPSNRIGCLQSLRTLGIGGCGNLEHLFDDMIGLNLIALR 695
Query: 338 TLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRR 397
TL + C LI LP IKYL++LE L + CE+LDL I +G+ D ++ L+
Sbjct: 696 TLVVGGCRNLIYLPHDIKYLTALENLTIATCENLDLLI------DGNVVDNEHCGFKLKT 749
Query: 398 VVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLS 457
+ + E+ L+ LP+WLLQ S +L+++ I C N + LP L+D +L+ L ILGCP LS
Sbjct: 750 LSLHELPLLVALPRWLLQWSACSLESIAIWRCHNLVMLPEWLQDFISLQKLDILGCPGLS 809
Query: 458 SLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
SL +H +T+L+ LT+ CPAL+E C TG+DWP+IAH+ ++ LD
Sbjct: 810 SLPIGLHRLTSLRKLTVEDCPALAESCNPETGKDWPQIAHVSEIYLD 856
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441815|ref|XP_002277987.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/530 (44%), Positives = 334/530 (63%), Gaps = 48/530 (9%)
Query: 1 MKCAFKEERDK-HPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY-------- 51
+KCAFK+ + K +PNL+KIG +IVKKCGG+PLAVR+LG LLY +E DWE
Sbjct: 357 LKCAFKDGQGKQYPNLVKIGNQIVKKCGGVPLAVRSLGGLLYSKLEERDWELVRDNEIWT 416
Query: 52 LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
LE+K+ GILP L+LSY +LP HLK C +CS+FPKDY ++ L+Q WMA GL+Q + N
Sbjct: 417 LEEKDDGILPALKLSYDELPSHLKPCFVFCSMFPKDYELNNVELIQLWMARGLIQPSSHN 476
Query: 112 EELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVN--S 169
+ELEDIG + + EL SRSFF D+ + + FFKMHDL+HDLAL + K E V S
Sbjct: 477 QELEDIGNQCIIELCSRSFFQDVEDYKVSV---FFKMHDLVHDLALSIKKIESKEVEDAS 533
Query: 170 DCQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQF 229
++P+++ +LL + +RTI F + + +V +C S+ ++
Sbjct: 534 ITDNVPEQIL---------------ALLQEKNNIRTIWFPYSEINATAEYVGTCSSRFKY 578
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELE 277
+RVL+L + E P IGN+KH+RYLD+ GN ++KKLP SI C ELE
Sbjct: 579 MRVLDLRGTDFEELPSSIGNMKHLRYLDICGNKRVKKLPASICKLYLLLTLSFKECTELE 638
Query: 278 ELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335
ELP+D+ + SLR A+TTKQ++ + +G+ L SLR L I+ C +E +FE + L
Sbjct: 639 ELPRDMGNFISLRFLAITTKQRAWPRKGNGLACLISLRWLLIAECNHVEFMFEGLQNLTA 698
Query: 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHL 395
LR+L I CP L+SLPP++K+L +LETL ++ CE + M+ +G+ N D + L
Sbjct: 699 LRSLEIRRCPSLVSLPPSVKHLPALETLMIFNCEMFNF---MDEDGDEEN-DIQGISCRL 754
Query: 396 RRVVIGEITQLLELPQWLLQG-STDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454
R +++ ++ +L LP WL+QG + TL LLI C F ALP SL++L +L+ L I CP
Sbjct: 755 RSLMVVDLPKLEALPGWLIQGLAASTLHYLLIRRCHKFKALPESLENLTSLQELRIDDCP 814
Query: 455 KLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
+LS+LS MH +TTLK L+I CP LS+RCK GEDW KIAH+P++ +D
Sbjct: 815 QLSTLSGGMHRLTTLKVLSIRDCPELSKRCKPEIGEDWHKIAHVPEIYID 864
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120592|ref|XP_002318368.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859041|gb|EEE96588.1| nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/528 (45%), Positives = 324/528 (61%), Gaps = 65/528 (12%)
Query: 1 MKCAFKEERDK-HPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL------- 52
+K AFKE +DK +PNL++IGEEIVKKCG +PLAVR L L+ +TDE DW +
Sbjct: 342 VKYAFKEGQDKQYPNLLRIGEEIVKKCGEVPLAVRTLAGQLFLNTDERDWNLIRDSRLWK 401
Query: 53 -EQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
EQKE ILP LR+SY QLP LK+C AYCS+FPK+Y ++ + L+QFWMAHGLLQS +
Sbjct: 402 VEQKEDDILPALRVSYEQLPSCLKRCFAYCSLFPKNYEYNDYELIQFWMAHGLLQSSDGE 461
Query: 112 EELEDIGMRYLKELLSRSFFHDLT--FGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNS 169
ELEDIG YLKEL F D +G L GM D+MHDLAL VA+DE VV +
Sbjct: 462 SELEDIGSIYLKELEYGCFLQDFRDLYGSLQFGML-----DVMHDLALSVAQDECFVVTA 516
Query: 170 DCQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKI-SQSFVESCISKSQ 228
+ + I K V+H+S ++ R+DF L +L +VRT+ +D + + S S +E+C+S+ +
Sbjct: 517 NSKRIEKSVQHISIPDPDSVRQDFPMLSKELDQVRTVFIHSDKDVLASNSILETCLSRFK 576
Query: 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLEL 276
+LR LNLS S + P+KIG LKH+RYLDLS N +IK+LP SI C E+
Sbjct: 577 YLRALNLSRSQFKELPKKIGKLKHLRYLDLSWNHRIKRLPNSICKLQNLQTLFLGGCDEI 636
Query: 277 EELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVL 336
EELP+ +R++ SLR L T+Q SL I L SLR L I+ C +LE LFE+++ L L
Sbjct: 637 EELPRGMRYMESLRFLWLATRQTSLPRDEIGCLKSLRFLWIATCENLERLFEDMENLSAL 696
Query: 337 RTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLR 396
R+L IV CP L SLPP+IKYL+SL+ L + C +L+ +++ L+
Sbjct: 697 RSLYIVTCPSLNSLPPSIKYLTSLQDLHISGCVALNF------------PNQEACEFKLK 744
Query: 397 RVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKL 456
++V+ + + ELP+WL++GS DTL+NL + CP + LP LK AL+ L ILGCP+
Sbjct: 745 KLVLCFLEAVEELPEWLIRGSADTLKNLKLEFCPALLELPACLKTFSALQELRILGCPR- 803
Query: 457 SSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
L+ERC R TG+DW KIA IP+V +D
Sbjct: 804 -----------------------LAERCDRETGDDWEKIARIPKVIVD 828
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456043|ref|XP_002277498.1| PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/530 (44%), Positives = 320/530 (60%), Gaps = 55/530 (10%)
Query: 1 MKCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------L 52
+KC+F++ D++PNL+KIG++IV+KC G+PLAVR+LGSLLY DE DW L
Sbjct: 338 VKCSFRDGEDEYPNLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWEL 397
Query: 53 EQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNE 112
EQ E GI+ LRLSYY LP HLKQC A CS+F KD+ F + L+ WMA GL+ S +N
Sbjct: 398 EQNEDGIMAALRLSYYDLPYHLKQCFALCSVFAKDFEFSNVELISTWMAEGLIHSSGQNA 457
Query: 113 ELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQ 172
++EDIG RY+ ELLSRSFF D+ + G+ ++ FKMHDL+HDLA+ A+ E L +N +
Sbjct: 458 KMEDIGERYINELLSRSFFQDVEQRIPGV-LYTFKMHDLVHDLAMFFAQPECLTLNFHKK 516
Query: 173 SIPKRVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDD-EKISQSFVESCISKSQF 229
IPKRV+H +F+ +++ +L L L V TI F ++ S+SFV++CI + +
Sbjct: 517 DIPKRVQHAAFSDTEWPKEESEALRFLEKLNNVHTIYFQMENVAPRSESFVKACILRFKC 576
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELE 277
+R L+L +S E P IG+LKH+RYL+LSGN +IKKLP SI C ELE
Sbjct: 577 IRRLDLQDSNFEALPNSIGSLKHLRYLNLSGNKRIKKLPNSICKLYHLQFLTLFGCSELE 636
Query: 278 ELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335
ELP+ I + SLR ++T KQ+ L +E G+RSL SL+ L I C +LE L + ++ L
Sbjct: 637 ELPRGIWSMISLRTVSITMKQRDLFGKEKGLRSLNSLQHLQIVDCLNLEFLSKGMESLIQ 696
Query: 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHL 395
LR L I CP L+SL IK+L++LE L + C+ L+ M+GE + + L
Sbjct: 697 LRILVISDCPSLVSLSHNIKFLTALEVLVIDNCQKLE-----SMDGEAEGQEDIQSFGSL 751
Query: 396 RRVVIGEITQLLELPQWLLQGST-DTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454
+ + G++ QL LP+WLL G T +TL L I +CP+ ALP S G
Sbjct: 752 QILFFGDLPQLEALPRWLLHGPTSNTLHQLHISNCPSLRALPES-------------GLQ 798
Query: 455 KLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
KL L+ L I CP L RCK TGEDW KIAHIP++ LD
Sbjct: 799 KL----------VYLQKLEIEDCPELIGRCKTETGEDWQKIAHIPKIYLD 838
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491491|ref|XP_003634282.1| PREDICTED: disease resistance protein RGA2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/531 (44%), Positives = 321/531 (60%), Gaps = 56/531 (10%)
Query: 1 MKCAFKE-ERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY-------- 51
+KCAF + E ++P L+KIG++IV+KC G+PLAVR+LGSLLY DE DW
Sbjct: 335 VKCAFMDGEEKRYPTLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWE 394
Query: 52 LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
LEQ E GI+ LRLSYY LP HLKQC A CS+FPKDY F + L+ WMA GL+ S +N
Sbjct: 395 LEQNEDGIMAALRLSYYDLPYHLKQCFALCSLFPKDYEFSNVVLISTWMAEGLIHSSGQN 454
Query: 112 EELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDC 171
++EDIG RY+ ELLSRSFF D+ +LG+ ++ FKMHDL+HDLA+ A+ E L++N
Sbjct: 455 AKMEDIGERYINELLSRSFFQDVEQLILGV-LYTFKMHDLVHDLAMFFAQPECLILNFHS 513
Query: 172 QSIPKRVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDD-EKISQSFVESCISKSQ 228
+ IPKRV+H +F+ +++ +L L L V TI F + S+SFV++CI + +
Sbjct: 514 KDIPKRVQHAAFSDTEWPKEECKALKFLEKLNNVHTIYFQMKNVAPRSESFVKACILRFK 573
Query: 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLEL 276
+R+L+L +S E P+ IG+LKH+R+LDLSGN +IKKLP SI C EL
Sbjct: 574 CIRILDLQDSNFEALPKSIGSLKHLRFLDLSGNKRIKKLPNSICKLYHLQALSLSRCSEL 633
Query: 277 EELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR 334
EELP+ I + SLR ++T KQ+ L +E G+RSL SL+ L I C +LE L + ++ L
Sbjct: 634 EELPRGIGSMISLRMVSITMKQRDLFGKEKGLRSLNSLQRLEIVDCLNLEFLSKGMESLI 693
Query: 335 VLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH 394
LR L I CP L+SL IK L++LE L + C+ L+ M+GE + +
Sbjct: 694 ELRMLVITDCPSLVSLSHGIKLLTALEVLAIGNCQKLE-----SMDGEAEGQEDIQSFGS 748
Query: 395 LRRVVIGEITQLLELPQWLL-QGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGC 453
L+ + + QL LP+WLL + +++TL +L I C N ALP + G
Sbjct: 749 LQILFFDNLPQLEALPRWLLHEPTSNTLHHLKISQCSNLKALPAN-------------GL 795
Query: 454 PKLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
KL+S LK L I CP L +RCK TGEDW KIAHIP++ D
Sbjct: 796 QKLAS----------LKKLEIDDCPELIKRCKPKTGEDWQKIAHIPEIYFD 836
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456041|ref|XP_002277479.1| PREDICTED: disease resistance protein RGA2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 230/536 (42%), Positives = 320/536 (59%), Gaps = 61/536 (11%)
Query: 1 MKCAFKEERDK-HPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY-------- 51
+KCAF++ DK +P L+KIG++IV+KC G+PLAVR+LGSLLY E DW
Sbjct: 338 VKCAFRDGEDKQYPTLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRGERDWVSIRDSKIWE 397
Query: 52 LEQKESGI-----LPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQ 106
LEQ E GI + LRLSYY LP HLKQC A CS+FPKDY F + L+ WMA GL+
Sbjct: 398 LEQNEDGINEDGIMAALRLSYYDLPYHLKQCFALCSLFPKDYEFSNVVLISTWMAEGLIH 457
Query: 107 SHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLV 166
S +N ++EDIG RY+ ELLSRSFF D+ +LG+ ++ FKMHDL+HDLA+ A+ E L+
Sbjct: 458 SSGQNAKMEDIGERYINELLSRSFFQDVEQLILGV-LYTFKMHDLVHDLAMFFAQPECLI 516
Query: 167 VNSDCQSIPKRVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDD-EKISQSFVESC 223
+N + IPKRV+H +F+ +++ +L L L V TI F + S+SFV++C
Sbjct: 517 LNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKLNNVHTIYFQMKNVAPRSESFVKAC 576
Query: 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------ 271
I + + +R+L+L +S E P+ IG++KH+R+LDLSGN +IKKLP SI
Sbjct: 577 ILRFKCIRILDLQDSNFEALPKSIGSMKHLRFLDLSGNKRIKKLPNSICKLYHLQALSLS 636
Query: 272 YCLELEELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEE 329
C ELEELP+ I + SLR ++T KQ+ L +E G+RSL SL+ L I C +LE L +
Sbjct: 637 RCSELEELPRGIWSMISLRTVSITMKQRDLFGKEKGLRSLNSLQRLEIVDCLNLEFLSKG 696
Query: 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389
++ L LR L I CP L+SL IK L++LE L + C+ L+ M+GE +
Sbjct: 697 MESLIELRMLVINDCPSLVSLSHGIKLLTALEVLAIGNCQKLE-----SMDGEAEGQEDI 751
Query: 390 NTRPHLRRVVIGEITQLLELPQWLL-QGSTDTLQNLLIIDCPNFMALPRSLKDLEALETL 448
+ L+ + + QL LP+WLL + +++TL +L I C N ALP
Sbjct: 752 QSFGSLQILFFDNLPQLEALPRWLLHEPTSNTLHHLKISQCSNLKALP------------ 799
Query: 449 FILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
+ D+ + +LK L I CP L +RCK TGEDW KIAHIP++ D
Sbjct: 800 -----------ANDLQKLASLKKLEIDDCPELIKRCKPKTGEDWQKIAHIPEIYFD 844
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456045|ref|XP_002277526.1| PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 227/532 (42%), Positives = 319/532 (59%), Gaps = 57/532 (10%)
Query: 1 MKCAFKE-ERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDW--------EY 51
+KCAFK+ E ++HPNL+KIGE+I++KC G+PLAVR+LGSLL+ DE DW
Sbjct: 339 VKCAFKDGEDEQHPNLLKIGEQIIEKCAGVPLAVRSLGSLLHLKRDERDWVSIKESEIWK 398
Query: 52 LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
LEQ E+ I+ L+LSYY LP H +QC A CSIFPKD+ FD+ L+ WMA GL+QS +N
Sbjct: 399 LEQDENRIMAALKLSYYDLPHHFRQCFALCSIFPKDFEFDNRLLISIWMAQGLIQSSGQN 458
Query: 112 EELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDC 171
++EDIG Y+ ELLSRS F D+ + G+ ++ FKMHDL+HDLA+ A+ E++ +N
Sbjct: 459 AKMEDIGENYINELLSRSLFQDVKQNVPGV-IYAFKMHDLVHDLAIFFAQPEYVTLNFHS 517
Query: 172 QSIPKRVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDD-EKISQSFVESCISKSQ 228
+ I KRV+H++F+ + +++F +L L L VRTI F D+ S SFV +C+ + +
Sbjct: 518 KDISKRVQHVAFSDNDWPKEEFEALRFLEKLNNVRTIDFQMDNVAPRSNSFVMACVLRFK 577
Query: 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLEL 276
+RVL+L+ES+ EV P I +LKH+R+L+LS N +IKKLP SI C EL
Sbjct: 578 CMRVLDLTESSFEVLPDSIDSLKHLRFLNLSKNERIKKLPNSICKLYHLQTLMLGECSEL 637
Query: 277 EELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR 334
EE P+ I + SLR +T KQK L +E +R L SL+ L C +LE LF+ + L
Sbjct: 638 EEFPRGIGSMISLRMLIITMKQKDLSRKEKRLRCLNSLQYLQFVDCLNLEFLFKGMKSLI 697
Query: 335 VLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK-NTRP 393
LR LSI CP L+SL +IK L +LE L + CE ++ M+GE + +
Sbjct: 698 ALRILSISNCPSLVSLSHSIKLLIALEVLAIRDCEKIEF-----MDGEVERQEEDIQSFG 752
Query: 394 HLRRVVIGEITQLLELPQWLLQGST-DTLQNLLIIDCPNFMALPRSLKDLEALETLFILG 452
L+ + + + LP+WLL G T +TL +L I +CPNF P
Sbjct: 753 SLKLLRFINLPKFEALPKWLLHGPTSNTLYHLQIWNCPNFKGFP---------------- 796
Query: 453 CPKLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
++ + +T+LK L I CP L RCK TGEDW K+AHIP++ LD
Sbjct: 797 -------NDGLQKLTSLKKLEIKDCPELIGRCKLETGEDWQKMAHIPEIYLD 841
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734263|emb|CBI15510.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/527 (42%), Positives = 307/527 (58%), Gaps = 81/527 (15%)
Query: 1 MKCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY--------L 52
+KC+F++ D++PNL+KIG++IV+KC G+PLAVR+LGSLLY DE DW L
Sbjct: 244 VKCSFRDGEDEYPNLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWEL 303
Query: 53 EQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNE 112
EQ E GI+ LRLSYY LP HLKQC A CS+F KD+ F + L+ WMA GL+ S +N
Sbjct: 304 EQNEDGIMAALRLSYYDLPYHLKQCFALCSVFAKDFEFSNVELISTWMAEGLIHSSGQNA 363
Query: 113 ELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDCQ 172
++EDIG RY+ ELLSRSFF D+ + G+ ++ FKMHDL+HDLA+ A+ E L +N +
Sbjct: 364 KMEDIGERYINELLSRSFFQDVEQRIPGV-LYTFKMHDLVHDLAMFFAQPECLTLNFHKK 422
Query: 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRV 232
IPKRV+H +F+ + +SFV++CI + + +R
Sbjct: 423 DIPKRVQHAAFSDTD-----------------------------ESFVKACILRFKCIRR 453
Query: 233 LNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELEELP 280
L+L +S E P IG+LKH+RYL+LSGN +IKKLP SI C ELEELP
Sbjct: 454 LDLQDSNFEALPNSIGSLKHLRYLNLSGNKRIKKLPNSICKLYHLQFLTLFGCSELEELP 513
Query: 281 KDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRT 338
+ I + SLR ++T KQ+ L +E G+RSL SL+ L I C +LE L + ++ L LR
Sbjct: 514 RGIWSMISLRTVSITMKQRDLFGKEKGLRSLNSLQHLQIVDCLNLEFLSKGMESLIQLRI 573
Query: 339 LSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398
L I CP L+SL IK+L++LE L + C+ L+ M+GE + + L+ +
Sbjct: 574 LVISDCPSLVSLSHNIKFLTALEVLVIDNCQKLE-----SMDGEAEGQEDIQSFGSLQIL 628
Query: 399 VIGEITQLLELPQWLLQGST-DTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLS 457
G++ QL LP+WLL G T +TL L I +CP+ ALP S G KL
Sbjct: 629 FFGDLPQLEALPRWLLHGPTSNTLHQLHISNCPSLRALPES-------------GLQKL- 674
Query: 458 SLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
L+ L I CP L RCK TGEDW KIAHIP++ LD
Sbjct: 675 ---------VYLQKLEIEDCPELIGRCKTETGEDWQKIAHIPKIYLD 712
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456092|ref|XP_002278041.1| PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/531 (42%), Positives = 315/531 (59%), Gaps = 57/531 (10%)
Query: 1 MKCAFKE-ERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDW--------EY 51
+KCAFK+ E ++HPNL+KIG++I++KC G+PLAVR+LGSLLY DE DW
Sbjct: 339 VKCAFKDGEDEQHPNLLKIGDQIIEKCAGVPLAVRSLGSLLYSKRDERDWVSIKESGIWK 398
Query: 52 LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
LEQ E+ I+ L+LSYY LP HL+QC A CS+F KD+ F + L+ FWMA GL+QS +N
Sbjct: 399 LEQDENRIMAALKLSYYDLPHHLRQCFALCSVFAKDFEFANVLLISFWMAQGLIQSSGQN 458
Query: 112 EELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSDC 171
+EDIG Y+ ELLSRS F D+ + G++ FKMHDL+HDLAL A+ E + ++
Sbjct: 459 ARMEDIGESYINELLSRSLFQDVKQNV--QGVYSFKMHDLVHDLALFFAQPECVTLHFHS 516
Query: 172 QSIPKRVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDD-EKISQSFVESCISKSQ 228
+ IP+RV+H+SF+ + ++F +L L L VRTI F ++ S SFV +C+ + +
Sbjct: 517 KDIPERVQHVSFSDIDWPEEEFEALRFLEKLNNVRTIDFQIENVAPRSNSFVAACVLRFK 576
Query: 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLEL 276
+RVL+L+ES+ EV P I +LKH+R L LS N +IKKLP SI C EL
Sbjct: 577 CIRVLDLTESSFEVLPNSIDSLKHLRSLGLSANKRIKKLPNSICKLYHLQTLILTNCSEL 636
Query: 277 EELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR 334
EELPK I + SLR LT KQ+ L ++ +R L SL+ L + C +LE LF ++
Sbjct: 637 EELPKSIGSMISLRMLFLTMKQRDLFGKKKELRCLNSLQYLRLVNCLNLEVLFRGMESRF 696
Query: 335 VLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH 394
LR L I CP L+SL +IK+L++LE L + CE L+ M+GE + +
Sbjct: 697 ALRILVIYNCPSLVSLSRSIKFLNALEHLVIDHCEKLEF-----MDGEAKEQEDIQSFGS 751
Query: 395 LRRVVIGEITQLLELPQWLLQGST-DTLQNLLIIDCPNFMALPRSLKDLEALETLFILGC 453
L+ + ++ L LP+WLL G T +TL +L+I C N ALP
Sbjct: 752 LQILQFEDLPLLEALPRWLLHGPTSNTLHHLMISSCSNLKALP----------------- 794
Query: 454 PKLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQVNLD 504
++ M +T+LK L I CP L RC+ TG+DW KIAH+ ++ D
Sbjct: 795 ------TDGMQKLTSLKKLEIHDCPELINRCRPKTGDDWHKIAHVSEIYFD 839
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570458|ref|XP_003553404.1| PREDICTED: disease resistance protein RGA2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 222/524 (42%), Positives = 310/524 (59%), Gaps = 37/524 (7%)
Query: 1 MKCAFKEE--RDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY------- 51
+K AFK E +KHP+L+ IG+EIVKKC G+PLAVR LGSLL+ + ++WEY
Sbjct: 334 VKWAFKNEGEEEKHPHLVNIGKEIVKKCKGVPLAVRTLGSLLFSKFEANEWEYVRDNEIW 393
Query: 52 -LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNK 110
L Q + ILP L+LSY LP +L+QC A S++PKDY F S + + W A G+L K
Sbjct: 394 NLPQNKDDILPALKLSYDFLPSYLRQCFALFSLYPKDYEFHSVEVARLWEALGVLAPPRK 453
Query: 111 NEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNSD 170
NE ED+ +YL ELLSRSF D + G ++ FK+HDL+HDLAL VAKDE L+VNS
Sbjct: 454 NETPEDVVKQYLDELLSRSFLQDF---IDGGTIYQFKIHDLVHDLALFVAKDECLLVNSH 510
Query: 171 CQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKIS-QSFVESCISKSQF 229
Q+IP+ +RHLSFA ++ F+S VR+I+ E + ++ + +C+SK +
Sbjct: 511 VQNIPENIRHLSFAEFSSLGNSFTS---KSVAVRSIMIPNGAEGANVEALLNTCVSKFKL 567
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI------------YCLELE 277
LRVL+L +S + PR IG LKH+R + N IK+LP SI C ELE
Sbjct: 568 LRVLDLRDSTCKTLPRSIGKLKHLRSFSIQNNPNIKRLPNSICKLQNLQFLSVLRCKELE 627
Query: 278 ELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLR 337
LPK R L LR +TTKQ L + I +L SL L+I C ++E +F + + L+
Sbjct: 628 ALPKGFRKLICLRHLGITTKQPVLPYTEITNLISLELLSIESCHNMESIFGGV-KFPALK 686
Query: 338 TLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRR 397
L++ C L SLP + LETL + C +LDL++ E +H+ +N + L+
Sbjct: 687 ALNVAACHSLKSLPLDVINFPELETLTVKDCVNLDLDLWKE------HHEEQNPKLRLKY 740
Query: 398 VVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLS 457
V + QL+ LPQWL Q + ++L+ L+I DC N LP L + L+ L I GCPKL
Sbjct: 741 VAFWGLPQLVALPQWL-QETANSLRTLIISDCDNLEMLPEWLSTMTNLKVLLIYGCPKLI 799
Query: 458 SLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIPQV 501
SL +++HH+T L+ L I GCP L ++C+ GE W KI+HI V
Sbjct: 800 SLPDNIHHLTALEHLHISGCPELCKKCQPHVGEFWSKISHIKDV 843
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.630 | 0.223 | 0.350 | 1.5e-43 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.736 | 0.351 | 0.326 | 2e-35 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.521 | 0.145 | 0.299 | 1.7e-31 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.674 | 0.374 | 0.283 | 9.9e-25 | |
| TAIR|locus:2011982 | 857 | AT1G50180 [Arabidopsis thalian | 0.920 | 0.541 | 0.265 | 8.4e-23 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.521 | 0.250 | 0.272 | 1.1e-22 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.521 | 0.250 | 0.272 | 1.1e-22 | |
| TAIR|locus:2037639 | 907 | AT1G58390 "AT1G58390" [Arabido | 0.295 | 0.164 | 0.309 | 5.3e-20 | |
| TAIR|locus:2037623 | 899 | AT1G58410 [Arabidopsis thalian | 0.906 | 0.508 | 0.261 | 7.8e-20 | |
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.682 | 0.381 | 0.266 | 1.1e-19 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 122/348 (35%), Positives = 174/348 (50%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKESG----ILPILRLSYYQLPPH 73
IG+ I ++C G+PLA RA+ S L + DW + + S ILP+L+LSY LPP
Sbjct: 358 IGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSSYTNSILPVLKLSYDSLPPQ 417
Query: 74 LKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHD 133
LK+C A CSIFPK + FD LV WMA LL + LEDIG YL +L+++SFF
Sbjct: 418 LKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQR 477
Query: 134 LTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FLVVNSDCQSIPKRVRHLSFAAANASRKD 192
L HDLM+DLA V+ D F + + + IP RH SF+ +
Sbjct: 478 LDITMTSFVM-----HDLMNDLAKAVSGDFCFRLEDDNIPEIPSTTRHFSFSRSQCDASV 532
Query: 193 FSSLLSDLGRVRTIV-F----STDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKI 247
+ +RTI+ F S + ++++ + ++ LR+L+LS I P+ +
Sbjct: 533 AFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSL 592
Query: 248 GNLKHMRYLDLSGNSKIKKLPKSIY------------CLELEELPKDIRHLTSLRAFALT 295
LK +RYLDLS ++KIK+LP+ + C +L LPK I L +LR L
Sbjct: 593 KGLKLLRYLDLS-STKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLV 651
Query: 296 TKQKSLQESGIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLR-TLSI 341
GI+ L SL+ L+ G L E+ +L LR TL I
Sbjct: 652 GTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRI 699
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 2.0e-35, P = 2.0e-35
Identities = 140/429 (32%), Positives = 208/429 (48%)
Query: 1 MKCAF-KEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY-------- 51
MK F +E + + + E IV KC G+PLAV+ LG +L +WE
Sbjct: 344 MKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWD 403
Query: 52 LEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN 111
L +S +LP+LR+SYY LP HLK+C AYCSIFPK + F+ +V WMA G LQ +
Sbjct: 404 LPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSS 463
Query: 112 EELEDIGMRYLKELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDEFLVVNSD- 170
+ LE++G Y EL SRS HD +++LA A EF D
Sbjct: 464 KNLEELGNEYFSELESRSLLQK--------TKTRYIMHDFINELAQF-ASGEFSSKFEDG 514
Query: 171 CQ-SIPKRVRHLSFAAAN-ASRKDFSSLLSDLGRVRTIV-FS-TDDEK---ISQSFVESC 223
C+ + +R R+LS+ N A +F +L ++ +RT + S T+ + + Q E
Sbjct: 515 CKLQVSERTRYLSYLRDNYAEPMEFEAL-REVKFLRTFLPLSLTNSSRSCCLDQMVSEKL 573
Query: 224 ISKSQFLRVLNLSESAI-EVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI----------- 271
+ LRVL+LS I + P N+ H R+LDLS ++++KLPKS+
Sbjct: 574 LPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLS-RTELEKLPKSLCYMYNLQTLLL 632
Query: 272 -YCLELEELPKDIRHLTSLRAFALT-TKQKSL-QESG-IRSLGSLRCLTISGCGDLEHLF 327
YC L+ELP DI +L +LR L TK + + + G ++SL +L +S D +
Sbjct: 633 SYCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSA-SDGSRI- 690
Query: 328 EEIDQLRVLR-TLSIVCCPRLISLPPAIKY-LSSLETLFLYKCESLDLNINMEMEGEGSN 385
E+ L L L IV R++ + A + L+S + L +D + GS+
Sbjct: 691 SELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHL-----REIDF-----VWRTGSS 740
Query: 386 HDRKNTRPH 394
NT PH
Sbjct: 741 SSENNTNPH 749
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 88/294 (29%), Positives = 147/294 (50%)
Query: 4 AF-KEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCS-TDEH--------DWEYLE 53
AF ++ D P L +G++I + G PLA + +GSLL + T +H +W+ L+
Sbjct: 478 AFGNDKHDSSPGLQVLGKQIASELKGNPLAAKTVGSLLGTNLTIDHWDSIIKSEEWKSLQ 537
Query: 54 QKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEE 113
Q GI+ L+LSY L L+QCV+YCS+FPK Y F L+Q W+A G ++ +E+
Sbjct: 538 QAY-GIMQALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWIAQGFVEE--SSEK 594
Query: 114 LEDIGMRYLKELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDEFLVVN-SDCQ 172
LE G +YL EL++ F + HDLMHDLA V++ E+ ++ S+C
Sbjct: 595 LEQKGWKYLAELVNSGFLQQVESTRFSSEYFVM--HDLMHDLAQKVSQTEYATIDGSECT 652
Query: 173 SIPKRVRHLSFAAANASRKD----------FSSLLSDL---GRVRTIVFSTDDEKISQSF 219
+ +RHLS +A RK+ F L + ++R++V + +
Sbjct: 653 ELAPSIRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFFKY 712
Query: 220 VESCISKSQFLRVLNLSESAIEVCP--RKIGNLKHMRYLDLSGNSKIKKLPKSI 271
+ ++Q LR+L ++ + + + N H+RYL + + LP+S+
Sbjct: 713 FKDAFKEAQHLRLLQITATYADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSL 766
|
|
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 9.9e-25, Sum P(2) = 9.9e-25
Identities = 112/395 (28%), Positives = 175/395 (44%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWE--------------YLEQKE-SGILPI 62
+G+E+V CGG+PLAV+ALG LL +W+ +L+ + + I
Sbjct: 352 MGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRI 411
Query: 63 LRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYL 122
L LSY LP HLK C + FP+D ++SL +W A G+ +ED G YL
Sbjct: 412 LSLSYEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGST----IEDSGEYYL 467
Query: 123 KELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FL--VVNSDCQSI----- 174
+EL+ R+ HD+M ++ L AK+E FL +++ C S
Sbjct: 468 EELVRRNLVI-ADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQS 526
Query: 175 PKRVRHLSFAAANASRKDFSSL-LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
P R R LS + A F L + +VR+++ +E S LRVL
Sbjct: 527 PSRSRRLSIHSGKA----FHILGHKNKTKVRSLIVPRFEEDYWIRSA-SVFHNLTLLRVL 581
Query: 234 NLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL----------EE--- 278
+LS E P IG L H+RYL L +K+ LP ++ L+L EE
Sbjct: 582 DLSWVKFEGGKLPCSIGGLIHLRYLSLY-EAKVSHLPSTMRNLKLLLYLNLRVDTEEPIH 640
Query: 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRT 338
+P ++ + LR +L K + + L +L L G ++ ++ LR
Sbjct: 641 VPNVLKEMIQLRYLSLPLKMDDKTKLELGDLVNLEYLY--GFSTQHSSVTDLLRMTKLRY 698
Query: 339 LSIVCCPR--LISLPPAIKYLSSLETL-FLYKCES 370
L++ R +L +++ L +LETL FL+ E+
Sbjct: 699 LAVSLSERCNFETLSSSLRELRNLETLNFLFSLET 733
|
|
| TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 8.4e-23, P = 8.4e-23
Identities = 138/519 (26%), Positives = 230/519 (44%)
Query: 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWE--------YLEQKESG-------ILP 61
+IG++IV +CGG+PLA+ LG LL + ++W+ Y+ S +
Sbjct: 353 EIGKQIVVRCGGLPLAITVLGGLLATKSTWNEWQRVCENIKSYVSNGGSSNGSKNMLVAD 412
Query: 62 ILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQ--SHNK-NEELEDIG 118
+L LSY LPPH+KQC Y + +P+DY +LV + +A G++ H + +ED+G
Sbjct: 413 VLCLSYEYLPPHVKQCFLYFAHYPEDYEVHVGTLVSYCIAEGMVMPVKHTEAGTTVEDVG 472
Query: 119 MRYLKELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDEFLVVNSDCQSIPKRV 178
YL+EL+ RS HDLM ++ L AK E V D + +
Sbjct: 473 QDYLEELVKRSMVMVGRRDIVTSEVMTCRMHDLMREVCLQKAKQESFVQVIDSRDQDEAE 532
Query: 179 RHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSES 238
+S + N SR R+ + +E +S + K + LRVL+L +
Sbjct: 533 AFISLST-NTSR-----------RISVQLHGGAEEHHIKSLSQVSFRKMKLLRVLDLEGA 580
Query: 239 AIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE-ELPKDIRHLTSLRAFALT 295
IE P +G+L H+R L + + +K+L SI L+L L ++ +
Sbjct: 581 QIEGGKLPDDVGDLIHLRNLSVR-LTNVKELTSSIGNLKLMITLDLFVKGQLYIPNQLWD 639
Query: 296 TKQKSLQESGIRSLGSLRCLTISGCGD------LEHLFEEIDQLRVLRTLSIVCCPRLIS 349
+ ++ SLR L+I+ + L + + +LR L T+++ C P L
Sbjct: 640 FPVGKCNPRDLLAMTSLRRLSINLSSQNTDFVVVSSLSKVLKRLRGL-TINVPCEPML-- 696
Query: 350 LPPAIKYLSSLETLFLYKCESLDLNINME-MEGEGS-NHDRKNTRPHLRRVVIGEITQLL 407
PP ++ L + F CE L+L + +E + GE S + D R +V L
Sbjct: 697 -PPVD--VTQLVSAFTNLCE-LELFLKLEKLPGEQSFSSDLGALRLWQCGLVDDPFMVLE 752
Query: 408 ELPQW-LLQGSTDTLQNLLIIDCPNFMALPR-SLKD--LEALETLFILGCPKLSSLSEDM 463
+LP +LQ + + N L +++D + L T+ + C KL S+ E
Sbjct: 753 KLPNLKILQLFEGSFVGSKLCCSKNLENLEEWTVEDGAMMRLVTVELKCCNKLKSVPEGT 812
Query: 464 HHVTTLKSLTIGG-CPALSERCKRPTGEDWPKIAHIPQV 501
+ L+ + IG A ++ GED+ K+ H+P V
Sbjct: 813 RFLKNLQEVEIGNRTKAFKDKLISG-GEDFYKVQHVPCV 850
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 82/301 (27%), Positives = 138/301 (45%)
Query: 5 FKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKESGILP--- 61
FK + +K ++G+ ++K CGG+PLA+R LG +L HDW L + L
Sbjct: 343 FKIDEEKE----ELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVGGR 398
Query: 62 -------------ILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQS- 107
+L LS+ +LP +LK C Y + FP DY + +L +W A G+ Q
Sbjct: 399 TNFNDDNNNTCNYVLSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPR 458
Query: 108 HNKNEELEDIGMRYLKELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FLV 166
H E + D+G Y++EL+ R+ HD+M ++ LL AK+E FL
Sbjct: 459 HYDGEIIRDVGDVYIEELVRRNMVIS-ERDVKTSRFETCHLHDMMREVCLLKAKEENFLQ 517
Query: 167 VNSDCQSIPKRVRHLSFAAANASRKDFSSLLS---DLG--RVRTIVFSTDDEKI----SQ 217
+ S S LS + + L D+ ++R++V + S
Sbjct: 518 ITSSRTSTGNS---LSIVTSRRLVYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSW 574
Query: 218 SFVESCISKSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275
+ S + + LRVL++ + ++ IG L H+RYL+L ++++ +P S+ L+
Sbjct: 575 MLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLK-HAEVTHIPYSLGNLK 633
Query: 276 L 276
L
Sbjct: 634 L 634
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 82/301 (27%), Positives = 138/301 (45%)
Query: 5 FKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKESGILP--- 61
FK + +K ++G+ ++K CGG+PLA+R LG +L HDW L + L
Sbjct: 343 FKIDEEKE----ELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVGGR 398
Query: 62 -------------ILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQS- 107
+L LS+ +LP +LK C Y + FP DY + +L +W A G+ Q
Sbjct: 399 TNFNDDNNNTCNYVLSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPR 458
Query: 108 HNKNEELEDIGMRYLKELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FLV 166
H E + D+G Y++EL+ R+ HD+M ++ LL AK+E FL
Sbjct: 459 HYDGEIIRDVGDVYIEELVRRNMVIS-ERDVKTSRFETCHLHDMMREVCLLKAKEENFLQ 517
Query: 167 VNSDCQSIPKRVRHLSFAAANASRKDFSSLLS---DLG--RVRTIVFSTDDEKI----SQ 217
+ S S LS + + L D+ ++R++V + S
Sbjct: 518 ITSSRTSTGNS---LSIVTSRRLVYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSW 574
Query: 218 SFVESCISKSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275
+ S + + LRVL++ + ++ IG L H+RYL+L ++++ +P S+ L+
Sbjct: 575 MLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLK-HAEVTHIPYSLGNLK 633
Query: 276 L 276
L
Sbjct: 634 L 634
|
|
| TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 51/165 (30%), Positives = 83/165 (50%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLE------------QKESGILPILRL 65
+G++++K CGG+PLA++ LG LL HDWE L S I +L +
Sbjct: 352 MGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSM 411
Query: 66 SYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGL--LQSHNKNEELEDIGMRYLK 123
S+ +LP +LK C Y + FP+D+ + L W A G+ + ++ E ++D+G YL+
Sbjct: 412 SFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLE 471
Query: 124 ELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FLVV 167
EL+ R+ HD+M ++ L AK+E FL +
Sbjct: 472 ELVRRNMII-WERDATASRFGTCHLHDMMREVCLFKAKEENFLQI 515
|
|
| TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 7.8e-20, P = 7.8e-20
Identities = 130/498 (26%), Positives = 216/498 (43%)
Query: 18 IGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQK------------ESGILPILRL 65
+G++++K CGG+ LAV+ LG LL HDW+ L + S I +L +
Sbjct: 351 MGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSV 410
Query: 66 SYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKN-EELEDIGMRYLKE 124
S+ +LP +LK C Y + FP+D+ D L +W A G+ + + E + D G Y++E
Sbjct: 411 SFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEE 470
Query: 125 LLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FL--VVNSDCQSIPKRV-RH 180
L+ R+ HD+M ++ L AK+E FL V N S P+ +
Sbjct: 471 LVRRNMVIS-ERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGAS 529
Query: 181 LSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCI-SKSQFLRVLNLSESA 239
F N + ++ ++R++V DD + + I ++ + LRVL+L ++
Sbjct: 530 RRFVLHNPTTLHVERYKNN-PKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAK 588
Query: 240 IE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIR-HLTSLRAFALTT 296
+ P IG L H+RYL L ++K+ LP S+ L L + DIR T + +
Sbjct: 589 FKGGKLPSDIGKLIHLRYLSLK-DAKVSHLPSSLRNLVLL-IYLDIRTDFTDIFVPNVFM 646
Query: 297 KQKSLQESGI-RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK 355
+ L+ + R + L +S LE L + L L + RL +L +
Sbjct: 647 GMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMV--RLRTLVIILS 704
Query: 356 YLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ 415
+SL+TL C L ME G N + R L + ++T +E+P+ L
Sbjct: 705 EGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEE-RMVLDFTYLKKLTLSIEMPR--LP 761
Query: 416 GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSL-TI 474
+L ++D ++ L + LE L +L LS D + K + +
Sbjct: 762 KIQHLPSHLTVLDL-SYCCLEED--PMPILEKLL-----ELKDLSLDYLSFSGRKMVCSA 813
Query: 475 GGCPALSERCKRPTGEDW 492
GG P L + E+W
Sbjct: 814 GGFPQL-RKLALDEQEEW 830
|
|
| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 108/405 (26%), Positives = 168/405 (41%)
Query: 6 KEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQ--------KE- 56
+ ++ + IG+E+V CGG+PLAV+ LG LL +W+ + + K
Sbjct: 334 RRNETEYEEMEAIGKEMVTYCGGLPLAVKVLGGLLANKHTASEWKRVSENIGAQIVGKSC 393
Query: 57 ------SGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNK 110
+ + IL LSY LP LK C Y + FP+DY + +L +W A G+
Sbjct: 394 LDDNSLNSVYRILSLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLT- 452
Query: 111 NEELEDIGMRYLKELLSRSFFHDLTXXXXXXXXXXXXXHDLMHDLALLVAKDE-FLV--- 166
+ D G YL+EL+ R+ HD+M ++ + AK E FL
Sbjct: 453 ---ILDSGEDYLEELVRRNLVI-AEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIK 508
Query: 167 VNSDCQSI----PKRVRHLSFAAANASRKDFSSLLSDLGRVRTI-VFSTDDEKISQSFVE 221
V + +I P R R L+ + A +L +VR++ V ++ QS
Sbjct: 509 VPTSTSTIIAQSPSRSRRLTVHSGKAFH-----ILGHKKKVRSLLVLGLKEDLWIQS--A 561
Query: 222 SCISKSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE-- 277
S LRVL+LS E P IG L H+R+L L + + LP +I L+L
Sbjct: 562 SRFQSLPLLRVLDLSSVKFEGGKLPSSIGGLIHLRFLSLH-QAVVSHLPSTIRNLKLMLY 620
Query: 278 -----------ELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL 326
+P ++ + LR +L + + LG L L C +H
Sbjct: 621 LNLHVAIGVPVHVPNVLKEMLELRYLSLPL---DMHDKTKLELGDLVNLEYLWCFSTQHS 677
Query: 327 FEEIDQLRV--LRTLSIVCCPRLI--SLPPAIKYLSSLETL-FLY 366
D LR+ LR + R +L +++ LETL F+Y
Sbjct: 678 -SVTDLLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIY 721
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 504 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 2e-24 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.002 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.002 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 10/116 (8%)
Query: 4 AFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKES------ 57
F++E P L ++ +EIV+KC G+PLA++ LG LL + +WE++ ++ +
Sbjct: 169 VFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGR 228
Query: 58 ----GILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHN 109
+L IL LSY LP HLK+C Y ++FP+DY L++ W+A G + +
Sbjct: 229 DGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSD 284
|
Length = 285 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 29/250 (11%)
Query: 233 LNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L + S +E + +L +R +DL G+ +K++P LE L L+
Sbjct: 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETL-----KLSDC--- 667
Query: 293 ALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISL 350
SL E S I+ L L L +S C +LE L I+ L+ L L++ C RL S
Sbjct: 668 ------SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSF 720
Query: 351 PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELP 410
P +++ L L + + N+ +E N D L + ++ + ++
Sbjct: 721 P---DISTNISWLDLDETAIEEFPSNLRLE----NLDEL----ILCEMKSEKLWERVQPL 769
Query: 411 QWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLK 470
L+ + +L L + D P+ + LP S+++L LE L I C L +L + ++ +L+
Sbjct: 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLE 828
Query: 471 SLTIGGCPAL 480
SL + GC L
Sbjct: 829 SLDLSGCSRL 838
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
L+ L+LS++ IE P + NL +++ LDLS N L +LPK + +L++L
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-------------LSDLPKLLSNLSNL 188
Query: 290 RAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSI--VCCPRL 347
L+ + S I L +L L +S + E + L L+ LS + +L
Sbjct: 189 NNLDLSGNKISDLPPEIELLSALEELDLSN----NSIIELLSSLSNLKNLSGLELSNNKL 244
Query: 348 ISLPPAIKYLSSLETLFLYKC--------------ESLDLNINMEMEGEGSNHDRKNTRP 393
LP +I LS+LETL L LDL+ N SN
Sbjct: 245 EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL-----SNALPLIALL 299
Query: 394 HLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGC 453
L ++ + L+ L+ +++ I + P +L LE+L L+ L
Sbjct: 300 LLLLELLLNLLLTLK----ALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDN 355
Query: 454 PKLSSL 459
S
Sbjct: 356 ALDESN 361
|
Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 64/240 (26%), Positives = 96/240 (40%), Gaps = 42/240 (17%)
Query: 240 IEVCPRKIGNLKHMRYLDLSGNSKIKKLPK--------SIYCLELEELPKDIR------- 284
+E+ P I NLK + L+LSG S++K P + +EE P ++R
Sbjct: 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDEL 752
Query: 285 HLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCC 344
L +++ L + + L SL L +S L L I L L L I C
Sbjct: 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812
Query: 345 PRLISLPPAIKYLSSLETLFLYKCESL----DLNINMEMEGEGSNHDRKNTRPHLRRVVI 400
L +LP I L SLE+L L C L D++ N+ +L R I
Sbjct: 813 INLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDL-------------NLSRTGI 858
Query: 401 GEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460
E+ P W+ + S L L + C N + ++ L+ LET+ C L+ S
Sbjct: 859 EEV------PWWIEKFSN--LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 28/147 (19%)
Query: 230 LRVLNLSESAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
L L+LS + + P IG+ ++ LDL GN + K+P S + +LTS
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS------------LTNLTS 189
Query: 289 LRAFALTTKQKSLQESGIRSLGSLRCL--------TISGCGDLEHLFEEIDQLRVLRTLS 340
L L + Q Q R LG ++ L +SG + EI L L L
Sbjct: 190 LEFLTLASNQLVGQIP--RELGQMKSLKWIYLGYNNLSG-----EIPYEIGGLTSLNHLD 242
Query: 341 IVCCPRLISLPPAIKYLSSLETLFLYK 367
+V +P ++ L +L+ LFLY+
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQ 269
|
Length = 968 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.88 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.86 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.85 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.76 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.71 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.69 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.68 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.62 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.57 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.56 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.54 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.53 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.48 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.47 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.42 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.41 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.36 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.33 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.31 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.1 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.01 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.0 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.97 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.93 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.91 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.86 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.84 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.77 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.76 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.69 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.6 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.59 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.55 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.53 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.46 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.43 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.41 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.39 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.27 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.21 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.2 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.19 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.15 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.95 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.87 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.8 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.78 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.78 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.74 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.54 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.44 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.32 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.29 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.26 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.09 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.68 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.57 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.33 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.98 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.79 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.28 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.42 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.96 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.76 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.76 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 92.68 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.29 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 91.88 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.82 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 89.04 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 88.88 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.33 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.33 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 84.22 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=428.40 Aligned_cols=453 Identities=29% Similarity=0.476 Sum_probs=326.0
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhh------------hccCCchhHHHhhhhC
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLE------------QKESGILPILRLSYYQ 69 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~------------~~~~~i~~~L~~sy~~ 69 (504)
++||+...+.+++++++|++||++|+|||||++|+|+.|+.+++..+|+..- ...+.|..+|++|||.
T Consensus 328 ~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 328 KKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred HhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 5788875555678999999999999999999999999999999999998721 1245788999999999
Q ss_pred CChhhHhhhhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeC
Q 038400 70 LPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMH 149 (504)
Q Consensus 70 L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mh 149 (504)
||++.|.||+|||.||+||.|+++.|+.+|+||||+.+......+++.|+.|+.+|++++++..... .++..+|+||
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~---~~~~~~~kmH 484 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD---EGRKETVKMH 484 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc---ccceeEEEee
Confidence 9988999999999999999999999999999999999966788999999999999999999987654 2567899999
Q ss_pred hhHHHHHHHHhc-----CceEEeccc-------CCCCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccch
Q 038400 150 DLMHDLALLVAK-----DEFLVVNSD-------CQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQ 217 (504)
Q Consensus 150 dl~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 217 (504)
|++||||.++++ +++.++... ....+..+|++++.++.... ...-..+++|++|.+..+.. ...
T Consensus 485 DvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~-~l~ 560 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD-WLL 560 (889)
T ss_pred HHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch-hhh
Confidence 999999999999 666555543 12334678999998876622 22234556899999986542 133
Q ss_pred HHHHHHhcCCCcccEEEeCCCC-ccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecc
Q 038400 218 SFVESCISKSQFLRVLNLSESA-IEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTT 296 (504)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~ 296 (504)
.....+|..++.||||||++|. +..+|+++++|.+||||+++++. +.+||.++++|.+|.+|++..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-------------I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-------------ISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-------------ccccchHHHHHHhhheecccc
Confidence 4455678899999999999764 66999999999999999999875 889999999999999999986
Q ss_pred cccccc-cccCCCCCCccEEeeeCCC--CcccchhhcCCCCcccEEeeccCC-------------------------Ccc
Q 038400 297 KQKSLQ-ESGIRSLGSLRCLTISGCG--DLEHLFEEIDQLRVLRTLSIVCCP-------------------------RLI 348 (504)
Q Consensus 297 ~~~~~~-~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~l~~L~~L~l~~~~-------------------------~l~ 348 (504)
+..... +.....|++||+|.+.... ........+.++.+|+.+...... ...
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~ 707 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR 707 (889)
T ss_pred ccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc
Confidence 654333 3444559999999987643 111222344555555555443221 123
Q ss_pred ccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCC-CCCccceEEEccCCCcccchhhhhcCCCCCccEEEec
Q 038400 349 SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKN-TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLII 427 (504)
Q Consensus 349 ~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 427 (504)
..+..+..+.+|+.|.+.+|...+......- ..... .++++..+.+.+|.....+ .|. ...++|+.|.+.
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~------~~~~~~~f~~l~~~~~~~~~~~r~l-~~~--~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEE------SLIVLLCFPNLSKVSILNCHMLRDL-TWL--LFAPHLTSLSLV 778 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhccccc------ccchhhhHHHHHHHHhhcccccccc-chh--hccCcccEEEEe
Confidence 3455677888999999999987654321100 01111 2445666666666555443 343 356888888888
Q ss_pred cCCCCCccCcCCCCCCCc----------ceE----ecccCccCCcCccCCCCCCCcCeEeEeCCCchhhhcCC
Q 038400 428 DCPNFMALPRSLKDLEAL----------ETL----FILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSERCKR 486 (504)
Q Consensus 428 ~~~~l~~l~~~~~~l~~L----------~~L----~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~ 486 (504)
.|+.++.+......+..+ ..+ ++.+.+.+...|- ..+.|+.+.+..||++...+..
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCccc
Confidence 887776654323222222 222 2222222222222 3344777777777777765444
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=399.74 Aligned_cols=440 Identities=22% Similarity=0.356 Sum_probs=312.5
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhh----h-hccCCchhHHHhhhhCCCh-hhH
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL----E-QKESGILPILRLSYYQLPP-HLK 75 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~----~-~~~~~i~~~L~~sy~~L~~-~~k 75 (504)
++||+++.+ ++++++++++||++|+|+||||+++|++|++ ++..+|+.. . ..+.+|.++|++|||+|++ ++|
T Consensus 362 ~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k 439 (1153)
T PLN03210 362 RSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDK 439 (1153)
T ss_pred HHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchh
Confidence 579988664 5689999999999999999999999999995 567889872 2 2345799999999999987 599
Q ss_pred hhhhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHH
Q 038400 76 QCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDL 155 (504)
Q Consensus 76 ~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~ 155 (504)
.||+|+||||.+..++. +..|.+.+.+... ..+..|++++|++.... .+.|||++|+|
T Consensus 440 ~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~~~--------~~~MHdLl~~~ 497 (1153)
T PLN03210 440 AIFRHIACLFNGEKVND---IKLLLANSDLDVN-----------IGLKNLVDKSLIHVRED--------IVEMHSLLQEM 497 (1153)
T ss_pred hhhheehhhcCCCCHHH---HHHHHHhcCCCch-----------hChHHHHhcCCEEEcCC--------eEEhhhHHHHH
Confidence 99999999999976543 6677776543321 23889999999986432 58999999999
Q ss_pred HHHHhcCce-------EEeccc-------CCCCCCCeEEEEEEcCCCCcc-chhhhhcCCCCeeEEeeecCCcc----cc
Q 038400 156 ALLVAKDEF-------LVVNSD-------CQSIPKRVRHLSFAAANASRK-DFSSLLSDLGRVRTIVFSTDDEK----IS 216 (504)
Q Consensus 156 ~~~~~~~~~-------~~~~~~-------~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~----~~ 216 (504)
|+++++++. +..... .......++.+++........ .....+.++++|+.|.+...... ..
T Consensus 498 ~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 498 GKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 999987653 111110 122335678887776544322 22456888999999988643211 01
Q ss_pred hHHHHHHhcC-CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeec
Q 038400 217 QSFVESCISK-SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALT 295 (504)
Q Consensus 217 ~~~~~~~~~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~ 295 (504)
... +..+.. ...||.|++.++.+..+|..+ .+.+|+.|++++|. +..+|.++..+++|+.|+++
T Consensus 578 ~~l-p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-------------l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 578 WHL-PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-------------LEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred eec-CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-------------ccccccccccCCCCCEEECC
Confidence 111 122333 356999999999999999887 57899999999875 77788888899999999999
Q ss_pred ccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccc
Q 038400 296 TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNI 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~ 375 (504)
++......+.++.+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+...+
T Consensus 643 ~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 643 GSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 76544444568899999999999999999999999999999999999999999999866 78999999999998765432
Q ss_pred cc-------cccCCC-CCCCCCCCCCccceEEEccCCCc------ccchhhhhcCCCCCccEEEeccCCCCCccCcCCCC
Q 038400 376 NM-------EMEGEG-SNHDRKNTRPHLRRVVIGEITQL------LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKD 441 (504)
Q Consensus 376 ~~-------~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l------~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 441 (504)
.. ...+.. ...+.....++|+.|.+.++... ..++... ...+++|+.|++++|+.+..+|.++++
T Consensus 722 ~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 722 DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhC
Confidence 10 000000 00001111223344443332110 0000000 012356777777777777777777777
Q ss_pred CCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 442 LEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
+++|+.|+|++|..++.+|..+ ++++|+.|++++|..++..
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 7777777777777777777655 6777777777777766544
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=215.48 Aligned_cols=259 Identities=23% Similarity=0.379 Sum_probs=190.0
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcce---------
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI--------- 271 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~--------- 271 (504)
.+||.|.+.++... ..+..+ .+.+|+.|++.++.+..+|..+..+++|++|++++|..++.+|...
T Consensus 589 ~~Lr~L~~~~~~l~----~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR----CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC----CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEE
Confidence 35788877755433 111222 3577888888888888888878888888888888777677776421
Q ss_pred --eccccccCchhhhccccCCeeeecccc-cccccccCCCCCCccEEeeeCCCCcccchhhcC-----------------
Q 038400 272 --YCLELEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEID----------------- 331 (504)
Q Consensus 272 --~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----------------- 331 (504)
.|..+..+|..++++++|+.|++++|. ....|..+ ++++|+.|++++|..+..+|....
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 145567778888888888888888764 33344333 677888888887765554442110
Q ss_pred ---------------------------------CCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccc
Q 038400 332 ---------------------------------QLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINME 378 (504)
Q Consensus 332 ---------------------------------~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 378 (504)
..++|+.|++++|..+..+|.+++++++|+.|++++|..++..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L---- 818 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL---- 818 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee----
Confidence 1235667777777777778888888888888888888766532
Q ss_pred ccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCc
Q 038400 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458 (504)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 458 (504)
+.....++|+.|++++|..+..+|.. .++|+.|+++++ .++.+|.++..+++|+.|++++|+.++.
T Consensus 819 --------P~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 819 --------PTGINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred --------CCCCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 11223458889999998888777643 378899998876 6788999999999999999999999999
Q ss_pred CccCCCCCCCcCeEeEeCCCchhhh
Q 038400 459 LSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 459 l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
+|..+..+++|+.+++++|++|+..
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCcccccccCCCeeecCCCcccccc
Confidence 9998899999999999999999754
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=221.31 Aligned_cols=294 Identities=22% Similarity=0.238 Sum_probs=134.8
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 255 (504)
+++.+++..+.+. ...+..+..+++|++|+++++.. ...++...+..+++|++|++++|.+. .+|. +.+++|++
T Consensus 70 ~v~~L~L~~~~i~-~~~~~~~~~l~~L~~L~Ls~n~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNIS-GKISSAIFRLPYIQTINLSNNQL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCcc-ccCChHHhCCCCCCEEECCCCcc--CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4566666555442 22344555666666666665442 12223333445566666666665554 2222 33455555
Q ss_pred eeccCCCCccccCccee-----------cccc-ccCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCC
Q 038400 256 LDLSGNSKIKKLPKSIY-----------CLEL-EELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGD 322 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~-----------~~~l-~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 322 (504)
|++++|...+.+|..+. .+.+ ..+|..++++++|++|++++|... ..|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 55555432223332221 0111 234445555555555555554433 2334455555555555555544
Q ss_pred cccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc-c---------cccCC---CCCCCCC
Q 038400 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN-M---------EMEGE---GSNHDRK 389 (504)
Q Consensus 323 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~-~---------~~~~~---~~~~~~~ 389 (504)
...+|..++.+++|++|++++|.....+|..++.+++|++|++++|........ . .+... .......
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 444555555555555555555544444555555555555555555432111000 0 00000 0000001
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTL 469 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 469 (504)
...++|+.|++.++.....+|.++ ..+++|+.|++.+|.....+|..++.+++|+.|++++|.....+|..+..+++|
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 112245555555443333344444 344555555555554333455555555555555555554434445555555555
Q ss_pred CeEeEeCC
Q 038400 470 KSLTIGGC 477 (504)
Q Consensus 470 ~~L~l~~c 477 (504)
+.|++.+|
T Consensus 383 ~~L~l~~n 390 (968)
T PLN00113 383 FKLILFSN 390 (968)
T ss_pred CEEECcCC
Confidence 55555544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-21 Score=217.94 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=156.5
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 255 (504)
.++++++..+..... ++ ...+++|++|+++++... ...+..+..+++|++|++++|.+. .+|..++++++|++
T Consensus 119 ~L~~L~Ls~n~l~~~-~p--~~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 119 SLRYLNLSNNNFTGS-IP--RGSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCEEECcCCccccc-cC--ccccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 455555555443211 11 123455556655544322 112233455555666666555544 45555555556666
Q ss_pred eeccCCCCccccCccee-----------cccc-ccCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCC
Q 038400 256 LDLSGNSKIKKLPKSIY-----------CLEL-EELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGD 322 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~-----------~~~l-~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 322 (504)
|++++|...+.+|..+. .+.+ ..+|..++++++|++|++++|... ..|..++++++|+.|++++|..
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 66655544334443322 1112 245556666666666666665543 3344566666666666666555
Q ss_pred cccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc----------ccccCC---CCCCCCC
Q 038400 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN----------MEMEGE---GSNHDRK 389 (504)
Q Consensus 323 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~----------~~~~~~---~~~~~~~ 389 (504)
...+|..++.+++|++|++++|.....+|..+..+++|+.|++++|........ ....+. .......
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 555566666666666666666654445565566666666666665543211100 000000 0000011
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTL 469 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 469 (504)
....+|+.|+++++.-...+|.++ ..+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+..+++|
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 112355666666544333445554 345666666666665555566667777788888887776555677777778888
Q ss_pred CeEeEeCCC
Q 038400 470 KSLTIGGCP 478 (504)
Q Consensus 470 ~~L~l~~c~ 478 (504)
+.|++++|.
T Consensus 431 ~~L~Ls~N~ 439 (968)
T PLN00113 431 YFLDISNNN 439 (968)
T ss_pred CEEECcCCc
Confidence 888887765
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-24 Score=204.24 Aligned_cols=296 Identities=25% Similarity=0.329 Sum_probs=209.4
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
++.|+++..+.. ..+.+.+..++.||++.+..+..+. .-++..+-++..|.+|||++|++...|..+..-+++-+|
T Consensus 56 kLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 56 KLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDNNLKN--SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhh--HhhhhhhccchhhHHHhhhcccccc--CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 456666666554 2335566677778887776555432 223334556788888888888888888888888888888
Q ss_pred eccCCCCccccCccee------------ccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCC-C
Q 038400 257 DLSGNSKIKKLPKSIY------------CLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCG-D 322 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~------------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~ 322 (504)
+|++| .+.++|.+++ .+.++.||..+..|..|+.|.+++|..... ...+..|++|+.|.+++.+ .
T Consensus 132 NLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 88876 5777777653 456888999999999999999998875432 3445667788888888754 4
Q ss_pred cccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEcc
Q 038400 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGE 402 (504)
Q Consensus 323 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 402 (504)
+..+|.++..|.||+.++++.| .+..+|..+-++++|+.|++++|...+...... .-.+|++|+++.
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~------------~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEG------------EWENLETLNLSR 277 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHH------------HHhhhhhhcccc
Confidence 6678999999999999999986 588999999999999999999997655432110 001344444443
Q ss_pred CCCccc-------------------------chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCC
Q 038400 403 ITQLLE-------------------------LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLS 457 (504)
Q Consensus 403 ~~~l~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 457 (504)
+.++. +|+.+ +.+.+|+.+...++ .++-+|+++..++.|+.|.++.+ .+-
T Consensus 278 -NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLi 352 (1255)
T KOG0444|consen 278 -NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLI 352 (1255)
T ss_pred -chhccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-cee
Confidence 23333 44444 44455555555443 46667777778888888888754 677
Q ss_pred cCccCCCCCCCcCeEeEeCCCchhhhcCCCC---CCCCCCc
Q 038400 458 SLSEDMHHVTTLKSLTIGGCPALSERCKRPT---GEDWPKI 495 (504)
Q Consensus 458 ~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~~~~i 495 (504)
.+|+.++-++.|+.|++..+|+|.-.+.+.. ..+|..|
T Consensus 353 TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 8999999999999999999999987766543 3455544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-20 Score=180.85 Aligned_cols=279 Identities=19% Similarity=0.244 Sum_probs=142.5
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..+|.+.+.+++.+...++.....++.++.|.+...... ..++-++.+.+|..|.+.+|++.++...+..|+.||.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE----QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh----hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 457788888888877778888888888888888643322 2333444555555555555555544444555555555
Q ss_pred eeccCCCCcc--ccCccee-----------ccccccCchhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCC
Q 038400 256 LDLSGNSKIK--KLPKSIY-----------CLELEELPKDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 256 L~l~~~~~~~--~lp~~~~-----------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 321 (504)
++++.|+ ++ -+|..+. .+.+++.|.++..-+++-.|++++|.+..+| +.+.+|+.|-.|++++ +
T Consensus 83 v~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-N 160 (1255)
T KOG0444|consen 83 VIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-N 160 (1255)
T ss_pred Hhhhccc-cccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-c
Confidence 5555442 11 0111100 1115555666666666666666655555443 3345566666666665 3
Q ss_pred CcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCC-CCccceEEE
Q 038400 322 DLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNT-RPHLRRVVI 400 (504)
Q Consensus 322 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l 400 (504)
.+..+|+.+..+.+|++|.+++|+....-...+..+++|+.|.+++....... .+.... ..+|..+++
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N-----------~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN-----------IPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc-----------CCCchhhhhhhhhccc
Confidence 45556666666666666666665422111111222444555555443221110 111111 115555666
Q ss_pred ccCCCcccchhhhhcCCCCCccEEEeccCC----------------------CCCccCcCCCCCCCcceEecccCc-cCC
Q 038400 401 GEITQLLELPQWLLQGSTDTLQNLLIIDCP----------------------NFMALPRSLKDLEALETLFILGCP-KLS 457 (504)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~----------------------~l~~l~~~~~~l~~L~~L~l~~c~-~l~ 457 (504)
+. +.+..+|..+ -.+++|+.|+|+++. .++.+|..+..|+.|+.|.+.++. ..+
T Consensus 230 S~-N~Lp~vPecl--y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SE-NNLPIVPECL--YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cc-cCCCcchHHH--hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence 54 4566666665 455666666666652 233444444555555555544432 122
Q ss_pred cCccCCCCCCCcCeEeE
Q 038400 458 SLSEDMHHVTTLKSLTI 474 (504)
Q Consensus 458 ~l~~~~~~l~~L~~L~l 474 (504)
.+|.+++.+.+|+.+..
T Consensus 307 GiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred CCccchhhhhhhHHHHh
Confidence 45555555555555443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-20 Score=168.71 Aligned_cols=225 Identities=29% Similarity=0.358 Sum_probs=170.2
Q ss_pred HhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 223 CISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
.++.+..++.|+.+++++..+|+.++.+..|+.|+.++|. +.++|.+++.+..|..++..+|++...
T Consensus 86 aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-------------~~el~~~i~~~~~l~dl~~~~N~i~sl 152 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-------------LKELPDSIGRLLDLEDLDATNNQISSL 152 (565)
T ss_pred HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-------------eeecCchHHHHhhhhhhhccccccccC
Confidence 3444455555555555555555555555555555555443 777888888888888888888888888
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
|+++.++.+|..|++.++ .+.++|+..-+++.|++|+...| .++.+|+.++.+.+|+.|++..|.....
T Consensus 153 p~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~l--------- 221 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFL--------- 221 (565)
T ss_pred chHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccC---------
Confidence 888888888888888884 45566666666888888887665 5788999999999999999888865542
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED 462 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 462 (504)
+...++..|++|+++. ..++-+|.... ..+++|..|+++++ .++++|..+..+.+|++|+++++ .+..+|..
T Consensus 222 ----Pef~gcs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~s 293 (565)
T KOG0472|consen 222 ----PEFPGCSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPYS 293 (565)
T ss_pred ----CCCCccHHHHHHHhcc-cHHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCcc
Confidence 2333344688888776 46777776662 47899999999998 68999999999999999999987 79999999
Q ss_pred CCCCCCcCeEeEeCCCch
Q 038400 463 MHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 463 ~~~l~~L~~L~l~~c~~l 480 (504)
++++ .|+.|.+.|+|.-
T Consensus 294 Lgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccc-eeeehhhcCCchH
Confidence 9999 9999999999964
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-18 Score=161.39 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=122.4
Q ss_pred hcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCchhh-hccccCCeeeeccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDI-RHLTSLRAFALTTKQKSL 301 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~ 301 (504)
|..-.++++|+|++|.|+.+- ..+..+.+|..|.|+.|. +..||... .+|++|+.|++..|.+..
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-------------ittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-------------ITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCc-------------ccccCHHHhhhcchhhhhhccccceee
Confidence 333344555555555544332 234444445555555443 55555443 347777777777666554
Q ss_pred c-cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc-ccc
Q 038400 302 Q-ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN-MEM 379 (504)
Q Consensus 302 ~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~ 379 (504)
. ...|.+|++||.|.+..|....--...+-.+.++++|+|..|.....-..|+-+++.|+.|+++.|.+-.+... +.+
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 4 33466666666666665432222223344556666666665542222234555566666666665543332210 000
Q ss_pred cCCCC-----------CCCCCCC-CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCC---CCccCcCCCCCCC
Q 038400 380 EGEGS-----------NHDRKNT-RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN---FMALPRSLKDLEA 444 (504)
Q Consensus 380 ~~~~~-----------~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~---l~~l~~~~~~l~~ 444 (504)
...-. ..+.... ...|+.|.++.. .+..+....+ ..+++|+.|+|+++.. +++-...+..|++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 00000 0000000 113444444441 2222222211 3457777777776642 2222344677888
Q ss_pred cceEecccCccCCcCcc-CCCCCCCcCeEeEeCCCch
Q 038400 445 LETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 445 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l 480 (504)
|+.|.+.|+ +++.+|. .|.++++|++|++.+++--
T Consensus 394 LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 394 LRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhheeecCc-eeeecchhhhccCcccceecCCCCcce
Confidence 888888886 6888775 4678888888888887643
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-18 Score=159.94 Aligned_cols=261 Identities=22% Similarity=0.292 Sum_probs=160.4
Q ss_pred hhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccc
Q 038400 196 LLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275 (504)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~ 275 (504)
.|.+|+.|+.+.+..+.+. ....+....+.++.+||+++|+++++|..+..+++|.+||+++| .+..+|.+++...
T Consensus 223 ef~gcs~L~Elh~g~N~i~---~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE---MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLH 298 (565)
T ss_pred CCCccHHHHHHHhcccHHH---hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccce
Confidence 5666666666666544332 34455566888889999999998888988888888999999876 5777776654110
Q ss_pred cc------------------------------------------------cCc----hhhhccccCCeeeeccccccccc
Q 038400 276 LE------------------------------------------------ELP----KDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 276 l~------------------------------------------------~lp----~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+. ..| ..+..+.+.+.|+++.-+....|
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 00 001 12233445556665555544444
Q ss_pred ccCCCCCC---ccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccccc
Q 038400 304 SGIRSLGS---LRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEME 380 (504)
Q Consensus 304 ~~~~~l~~---L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 380 (504)
..+..... ....+++.| .+.++|..+..+..+.+.-+..+..+..+|..++.+++|..|++++|.--.++
T Consensus 379 dEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP------ 451 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP------ 451 (565)
T ss_pred HHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc------
Confidence 33322222 445555553 45556666555555554444444445555555666666666666655321111
Q ss_pred CCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC-CCCCCCcceEecccCccCCcC
Q 038400 381 GEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS-LKDLEALETLFILGCPKLSSL 459 (504)
Q Consensus 381 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l 459 (504)
.+....-.|+.|+++.. .+..+|... .....|+.+..++ ..+.+++.. +.+|.+|.+|++.++ .+..+
T Consensus 452 ------~e~~~lv~Lq~LnlS~N-rFr~lP~~~--y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~I 520 (565)
T KOG0472|consen 452 ------EEMGSLVRLQTLNLSFN-RFRMLPECL--YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQI 520 (565)
T ss_pred ------hhhhhhhhhheeccccc-ccccchHHH--hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhC
Confidence 11111114566666553 566677665 3344455554444 367777655 899999999999886 78999
Q ss_pred ccCCCCCCCcCeEeEeCCC
Q 038400 460 SEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 460 ~~~~~~l~~L~~L~l~~c~ 478 (504)
|+.++++++|++|++.++|
T Consensus 521 Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ChhhccccceeEEEecCCc
Confidence 9999999999999999998
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-17 Score=154.44 Aligned_cols=106 Identities=34% Similarity=0.693 Sum_probs=83.2
Q ss_pred cccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhh----h-------ccCCchhHHHhhhhCCC
Q 038400 3 CAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLE----Q-------KESGILPILRLSYYQLP 71 (504)
Q Consensus 3 ~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~----~-------~~~~i~~~L~~sy~~L~ 71 (504)
.|+......++.+.+++++|+++|+|+||||+++|++|+.+.+..+|+... . ....+..++.+||+.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~ 248 (287)
T PF00931_consen 169 RAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP 248 (287)
T ss_dssp HHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC
Confidence 344443223466788999999999999999999999997655777898721 1 13458899999999999
Q ss_pred hhhHhhhhhhcccCCCCccChHHHHHHHHHccCcccC
Q 038400 72 PHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSH 108 (504)
Q Consensus 72 ~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~ 108 (504)
++.|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 249 ~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 249 DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999998765
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-15 Score=142.24 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=143.7
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-c
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-P 280 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p 280 (504)
..++|+++++... .+...+|.++++|+.+++..|.++.+|.......||+.|+|.+|. +.++ .
T Consensus 79 ~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-------------I~sv~s 142 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-------------ISSVTS 142 (873)
T ss_pred ceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-------------cccccH
Confidence 4556777755433 333455677777777777777777777777777777777777663 2222 1
Q ss_pred hhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCC
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLS 358 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~ 358 (504)
+.+..++.|+.||++.|.+...+ +.+..-.++++|++++|....---..+..+.+|..|.|+.|. ++.+|. .+.+++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLP 221 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcc
Confidence 23455566666666665554443 233344556666666644332223445555566666666553 444443 344466
Q ss_pred CccEEEeccCCCccccc----------cccccCC--CCC-CCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEE
Q 038400 359 SLETLFLYKCESLDLNI----------NMEMEGE--GSN-HDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNL 424 (504)
Q Consensus 359 ~L~~L~l~~~~~l~~~~----------~~~~~~~--~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L 424 (504)
+|+.|++..|..-...+ +..+... ... ........++++|++... .+..+ ..|+ .+++.|+.|
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~l--fgLt~L~~L 298 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWL--FGLTSLEQL 298 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccc--cccchhhhh
Confidence 66666665553211100 0000000 000 111222236667776653 33333 2455 567888888
Q ss_pred EeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCC
Q 038400 425 LIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 425 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 478 (504)
+++++..-+.-+.+....++|+.|+++.+ .++++++ .+..+..|++|.++.+.
T Consensus 299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc
Confidence 88877433334566777788889988886 5666654 46667888888888764
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-17 Score=162.93 Aligned_cols=284 Identities=24% Similarity=0.279 Sum_probs=170.5
Q ss_pred eEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeee
Q 038400 178 VRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLD 257 (504)
Q Consensus 178 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 257 (504)
+..+.+.++.. ..++..+..+.+|+.|.++.+.+. ..+....++.+|++|.|.+|.+..+|.++..+++|++|+
T Consensus 47 L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~i~----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNYIR----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeecccccc--ccCCchhhhHHHHhhcccchhhHh----hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 34555555444 355666777778888877754432 233556778888888888888888888888888888888
Q ss_pred ccCCCCccccCccee-----------------------------------------------------------------
Q 038400 258 LSGNSKIKKLPKSIY----------------------------------------------------------------- 272 (504)
Q Consensus 258 l~~~~~~~~lp~~~~----------------------------------------------------------------- 272 (504)
+++|. ...+|.-+.
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence 88773 444443211
Q ss_pred --------ccccccC---------------chh----hhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 273 --------CLELEEL---------------PKD----IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 273 --------~~~l~~l---------------p~~----i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
++.+..+ |-. -..-.+|++++++++.....|..++.+.+|+.++..+| .+..
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHh
Confidence 0000000 000 00112455666665555555666788888899888774 4577
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccc------------------c---ccC---
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINM------------------E---MEG--- 381 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~------------------~---~~~--- 381 (504)
+|..+..+++|+.|.+..|. +..+|+....++.|++|++..|.....+... . ..+
T Consensus 279 lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 88888888888888887764 7777777777888888888866532221100 0 000
Q ss_pred --------------CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcce
Q 038400 382 --------------EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALET 447 (504)
Q Consensus 382 --------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 447 (504)
.....+....+.+|+.|+++. ..+..+|.... ..+..|+.|+|+++ .++.+|..+..++.|++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHH
Confidence 000111222344788888876 45677776543 56677777888776 45556555555555555
Q ss_pred EecccCccCCcCccCCCCCCCcCeEeEe
Q 038400 448 LFILGCPKLSSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 448 L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 475 (504)
|...++ .+..+| .+..++.|+.+|++
T Consensus 435 L~ahsN-~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 435 LRAHSN-QLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred HhhcCC-ceeech-hhhhcCcceEEecc
Confidence 555443 344444 34445555555554
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-16 Score=130.60 Aligned_cols=133 Identities=27% Similarity=0.383 Sum_probs=111.7
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+.+...|.+++|.++.+|..+..+.+|+.|++.+|+ ++++|..|+.+++|++|++.-|.....|.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-------------ie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-------------IEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-------------hhhcChhhhhchhhhheecchhhhhcCccc
Confidence 4566777889999999999999999999999999876 888888999999999999998888888889
Q ss_pred CCCCCCccEEeeeCCC-CcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcc
Q 038400 306 IRSLGSLRCLTISGCG-DLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~ 372 (504)
|+.++-|+.|++..++ +-..+|..+-.|+.|+-|.+++| ....+|..++++++|+.|.+..+.-++
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh
Confidence 9999999999998754 33456777778888998999887 478888889999999999888775443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=149.14 Aligned_cols=225 Identities=19% Similarity=0.285 Sum_probs=147.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
++++.|.++++.+.. ++.. + ..+|++|++++|.++.+|..+. .+|+.|++++|. +..+|
T Consensus 199 ~~L~~L~Ls~N~Lts---LP~~-l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-------------L~~LP 257 (754)
T PRK15370 199 EQITTLILDNNELKS---LPEN-L--QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-------------ITELP 257 (754)
T ss_pred cCCcEEEecCCCCCc---CChh-h--ccCCCEEECCCCccccCChhhh--ccccEEECcCCc-------------cCcCC
Confidence 356666666554331 1111 1 1356666666666666665443 356666666654 55566
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCc
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSL 360 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L 360 (504)
..+. .+|+.|++++|.+...|..+. ++|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+ .++|
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL 327 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGL 327 (754)
T ss_pred hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCccc--cccc
Confidence 5543 478888888887776665443 57888888885 4566665443 468888888864 56676644 3678
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLK 440 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 440 (504)
+.|++++|..-.++ . .-+++|+.|+++++ .+..+|..+ .++|+.|++++| .+..+|..+.
T Consensus 328 ~~L~Ls~N~Lt~LP-------------~-~l~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N-~Lt~LP~~l~ 387 (754)
T PRK15370 328 KTLEAGENALTSLP-------------A-SLPPELQVLDVSKN-QITVLPETL----PPTITTLDVSRN-ALTNLPENLP 387 (754)
T ss_pred eeccccCCccccCC-------------h-hhcCcccEEECCCC-CCCcCChhh----cCCcCEEECCCC-cCCCCCHhHH
Confidence 88888887532211 0 11248999999986 566777655 368999999987 5777887553
Q ss_pred CCCCcceEecccCccCCcCccCCC----CCCCcCeEeEeCCCc
Q 038400 441 DLEALETLFILGCPKLSSLSEDMH----HVTTLKSLTIGGCPA 479 (504)
Q Consensus 441 ~l~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~l~~c~~ 479 (504)
++|+.|++++| .+..+|..+. .++++..|++.++|-
T Consensus 388 --~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 --AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 47999999987 5777776543 357889999999884
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=141.01 Aligned_cols=246 Identities=21% Similarity=0.266 Sum_probs=152.2
Q ss_pred EEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeec
Q 038400 179 RHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDL 258 (504)
Q Consensus 179 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 258 (504)
..+.+..+.+. .++..+. .+++.|.+..+..... + ...++|++|++++|.++.+|.. ..+|+.|++
T Consensus 204 ~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt~L----P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 204 AVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSL----P---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred cEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCCCC----C---CCCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 34555555442 2343332 3678888876654411 1 1357788888888888887753 357788888
Q ss_pred cCCCCccccCcc--------eeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhc
Q 038400 259 SGNSKIKKLPKS--------IYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEI 330 (504)
Q Consensus 259 ~~~~~~~~lp~~--------~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 330 (504)
++|. +..+|.. +..+.+..+|.. +++|+.|++++|.+...+.. ..+|+.|++++| .+..+|.
T Consensus 270 s~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~-- 339 (788)
T PRK15387 270 FSNP-LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT-- 339 (788)
T ss_pred cCCc-hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC-ccccccc--
Confidence 8773 4444431 113345555542 35677777777766554432 234666666664 3444543
Q ss_pred CCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccch
Q 038400 331 DQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELP 410 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 410 (504)
...+|+.|++++|. ++.+|.. .++|+.|++++|..-.++ ....+|+.|+++++ .+..+|
T Consensus 340 -lp~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP---------------~l~~~L~~LdLs~N-~Lt~LP 398 (788)
T PRK15387 340 -LPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGN-RLTSLP 398 (788)
T ss_pred -cccccceEecCCCc-cCCCCCC---CcccceehhhccccccCc---------------ccccccceEEecCC-cccCCC
Confidence 12467777777753 5566653 245666666665322110 11236888888874 566666
Q ss_pred hhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc
Q 038400 411 QWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 411 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 479 (504)
.. .++|+.|++++| .++.+|.. ..+|+.|++++| .++.+|..+.++++|+.|++++|+-
T Consensus 399 ~l-----~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 399 VL-----PSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred Cc-----ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 43 367899999887 46777753 346888899886 6888998888899999999999874
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=143.83 Aligned_cols=222 Identities=19% Similarity=0.290 Sum_probs=151.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.+...|.+.+..... ++..+ .+.|+.|++++|.++.+|..+. .+|++|++++|. +..+|
T Consensus 178 ~~~~~L~L~~~~Lts----LP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-------------LtsLP 236 (754)
T PRK15370 178 NNKTELRLKILGLTT----IPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-------------LTSIP 236 (754)
T ss_pred cCceEEEeCCCCcCc----CCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-------------cccCC
Confidence 345667666544331 11111 2468888888888888887654 478888888774 45555
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCc
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSL 360 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L 360 (504)
..+. .+|+.|++++|.+...|..+. ++|+.|++++| .+..+|..+. ++|+.|++++| .++.+|..+. ++|
T Consensus 237 ~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL 306 (754)
T PRK15370 237 ATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGI 306 (754)
T ss_pred hhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccch--hhH
Confidence 5443 368888888888776665443 57888888864 5667776553 57888888887 4667776442 468
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLK 440 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 440 (504)
+.|++++|....++ ...+++|+.|.++++ .++.+|..+ .++|+.|++++| .++.+|..+
T Consensus 307 ~~L~Ls~N~Lt~LP--------------~~l~~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~Ls~N-~L~~LP~~l- 365 (754)
T PRK15370 307 THLNVQSNSLTALP--------------ETLPPGLKTLEAGEN-ALTSLPASL----PPELQVLDVSKN-QITVLPETL- 365 (754)
T ss_pred HHHHhcCCccccCC--------------ccccccceeccccCC-ccccCChhh----cCcccEEECCCC-CCCcCChhh-
Confidence 88888877532211 011247999999886 577787655 378999999988 577788655
Q ss_pred CCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 441 DLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 441 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.++|+.|++++| .+..+|..+. .+|+.|++++|.
T Consensus 366 -p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 366 -PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred -cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC
Confidence 368999999998 6778887543 478888888875
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-15 Score=122.24 Aligned_cols=150 Identities=27% Similarity=0.405 Sum_probs=86.2
Q ss_pred cccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCc-cccCccC
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRL-ISLPPAI 354 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~l 354 (504)
+..+|..|..+.+|+.|++.+|++...|..++.++.|+.|+++- +.+..+|.++|.++.|+.|++++|..- ..+|..+
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 44455555555555555555555555555555555555555543 334444555555555555555544321 2344444
Q ss_pred CCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCc
Q 038400 355 KYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMA 434 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 434 (504)
-.+..|+.|.++++ .++-+|..+ +.+++|+.|.++++ .+-+
T Consensus 124 f~m~tlralyl~dn------------------------------------dfe~lp~dv--g~lt~lqil~lrdn-dll~ 164 (264)
T KOG0617|consen 124 FYMTTLRALYLGDN------------------------------------DFEILPPDV--GKLTNLQILSLRDN-DLLS 164 (264)
T ss_pred hHHHHHHHHHhcCC------------------------------------CcccCChhh--hhhcceeEEeeccC-chhh
Confidence 44444444433333 345556666 67788888888877 3556
Q ss_pred cCcCCCCCCCcceEecccCccCCcCccCCCCC
Q 038400 435 LPRSLKDLEALETLFILGCPKLSSLSEDMHHV 466 (504)
Q Consensus 435 l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l 466 (504)
+|..++.+..|+.|.|.++ .++.+|+.++++
T Consensus 165 lpkeig~lt~lrelhiqgn-rl~vlppel~~l 195 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGN-RLTVLPPELANL 195 (264)
T ss_pred CcHHHHHHHHHHHHhcccc-eeeecChhhhhh
Confidence 7888888888888888886 677777655443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-14 Score=147.89 Aligned_cols=223 Identities=21% Similarity=0.245 Sum_probs=154.6
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
...+|++++++.+.+..+|+.++.+.+|+.+++.+|. +..+|..+..+.+|+.|.+..|...-.++.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-------------l~~lp~ri~~~~~L~~l~~~~nel~yip~~ 305 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-------------LVALPLRISRITSLVSLSAAYNELEYIPPF 305 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchh-------------HHhhHHHHhhhhhHHHHHhhhhhhhhCCCc
Confidence 3467888888888888888888888888888888775 566666666666777776666666666666
Q ss_pred CCCCCCccEEeeeCCCCcccchhhc--------------------------CCCCcccEEeeccCCCccccCccCCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEI--------------------------DQLRVLRTLSIVCCPRLISLPPAIKYLSS 359 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~--------------------------~~l~~L~~L~l~~~~~l~~l~~~l~~l~~ 359 (504)
..+++.|++|++..+ ++..+|+.+ ..++.|+.|.+.+|......-+.+.+.++
T Consensus 306 le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 666677777766653 333333211 12345777777777655444455778889
Q ss_pred ccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCC
Q 038400 360 LETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL 439 (504)
Q Consensus 360 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 439 (504)
|+.|++++|..-.++ .........|++|.++| ..++.+|..+ ..++.|+.|...++ .+..+| .+
T Consensus 385 LKVLhLsyNrL~~fp-----------as~~~kle~LeeL~LSG-NkL~~Lp~tv--a~~~~L~tL~ahsN-~l~~fP-e~ 448 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFP-----------ASKLRKLEELEELNLSG-NKLTTLPDTV--ANLGRLHTLRAHSN-QLLSFP-EL 448 (1081)
T ss_pred eeeeeecccccccCC-----------HHHHhchHHhHHHhccc-chhhhhhHHH--HhhhhhHHHhhcCC-ceeech-hh
Confidence 999999988532221 11111223688899998 5788999887 67788888887765 577888 58
Q ss_pred CCCCCcceEecccCccCCcCccCCCCC-CCcCeEeEeCCCc
Q 038400 440 KDLEALETLFILGCPKLSSLSEDMHHV-TTLKSLTIGGCPA 479 (504)
Q Consensus 440 ~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~ 479 (504)
..++.|+.++++.+ .++.+--...-. ++|++|+++|++.
T Consensus 449 ~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 89999999999865 566432111122 8999999999985
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-13 Score=131.53 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=100.4
Q ss_pred EEcCCCCccchhhhhcCCCCeeEEeeecCCccc-chHHHHHHhcCCCcccEEEeCCCCccc-------cCccccCCCCcC
Q 038400 183 FAAANASRKDFSSLLSDLGRVRTIVFSTDDEKI-SQSFVESCISKSQFLRVLNLSESAIEV-------CPRKIGNLKHMR 254 (504)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-------lp~~~~~l~~L~ 254 (504)
+.....+...+...+..+.+++.+.+.++.... ....+...+...+.|+.|+++++.+.. ++..+..+++|+
T Consensus 5 L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 84 (319)
T cd00116 5 LKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84 (319)
T ss_pred cccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee
Confidence 333344334455556666678888887665431 112234445566777888887776552 234456677888
Q ss_pred eeeccCCCCccccCcceeccccccCchhhhcccc---CCeeeeccccccc-----ccccCCCC-CCccEEeeeCCCCc--
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS---LRAFALTTKQKSL-----QESGIRSL-GSLRCLTISGCGDL-- 323 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~---L~~L~l~~~~~~~-----~~~~~~~l-~~L~~L~l~~~~~l-- 323 (504)
+|++++|.... ..+..+..+.+ |++|++++|.... ....+..+ ++|+.|++++|...
T Consensus 85 ~L~l~~~~~~~------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 85 ELDLSDNALGP------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred EEEccCCCCCh------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 88887764211 22333333433 7788877766542 11234455 77788888776533
Q ss_pred --ccchhhcCCCCcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCC
Q 038400 324 --EHLFEEIDQLRVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 324 --~~~~~~~~~l~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~ 369 (504)
..++..+..+++|++|++++|.... .++..+..+++|+.|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 1334455566777778777765321 233334455677777777774
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-12 Score=131.27 Aligned_cols=181 Identities=22% Similarity=0.174 Sum_probs=123.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
..|+.|++++|.++.+|.. +++|++|++++|. +..+|... .+|+.|++++|.+...|.
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-------------L~~Lp~lp---~~L~~L~Ls~N~L~~LP~--- 339 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-------------LASLPALP---SELCKLWAYNNQLTSLPT--- 339 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCc-------------cccCCCCc---ccccccccccCccccccc---
Confidence 3455555666655555542 3456666666653 45555422 357788888888776553
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHD 387 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 387 (504)
...+|+.|++++| .+..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|..-.++
T Consensus 340 lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP------------- 398 (788)
T PRK15387 340 LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLP------------- 398 (788)
T ss_pred cccccceEecCCC-ccCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCC-------------
Confidence 2258999999985 56667753 3578888888874 6677764 357899999988533211
Q ss_pred CCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 388 RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
....+|+.|+++++ .+..+|... .+|+.|++++| .++.+|..+..+++|+.|++++|+.-...+
T Consensus 399 --~l~s~L~~LdLS~N-~LssIP~l~-----~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 399 --VLPSELKELMVSGN-RLTSLPMLP-----SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred --CcccCCCEEEccCC-cCCCCCcch-----hhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHH
Confidence 11247999999985 577777543 57889999887 578899999999999999999986544433
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=126.28 Aligned_cols=261 Identities=20% Similarity=0.171 Sum_probs=160.4
Q ss_pred eEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCccc---chHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCC
Q 038400 178 VRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKI---SQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNL 250 (504)
Q Consensus 178 ~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l 250 (504)
++.+.+..+.+... .+...+...+.++.+.+.+..... ........+..+++|+.|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 56667766655322 345556677889999887655431 11333456777899999999999986 344444444
Q ss_pred ---CCcCeeeccCCCCccccCcceeccccccCchhhhcc-ccCCeeeeccccccc-----ccccCCCCCCccEEeeeCCC
Q 038400 251 ---KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL-TSLRAFALTTKQKSL-----QESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 251 ---~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 321 (504)
++|++|++++|.. .. .....+...+..+ ++|+.|++++|.+.. ....+..+++|++|++++|.
T Consensus 105 ~~~~~L~~L~ls~~~~-~~-------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 105 LRSSSLQELKLNNNGL-GD-------RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred hccCcccEEEeeCCcc-ch-------HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4499999998851 10 1122344556677 899999999887662 23346677899999999976
Q ss_pred Ccc----cchhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCC
Q 038400 322 DLE----HLFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRP 393 (504)
Q Consensus 322 ~l~----~~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (504)
... .++..+..+++|+.|++++|... ..+...+..+++|++|++++|..-..
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-------------------- 236 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-------------------- 236 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH--------------------
Confidence 432 34455667789999999998632 23455667788999999998752210
Q ss_pred ccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCC----CccCcCCCCCCCcceEecccCccCCc----CccCCCC
Q 038400 394 HLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNF----MALPRSLKDLEALETLFILGCPKLSS----LSEDMHH 465 (504)
Q Consensus 394 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----l~~~~~~ 465 (504)
.+..+...+. ...+.|+.|++.+|... ..+...+..+++|+++++++|..-.. +...+..
T Consensus 237 -----------~~~~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 237 -----------GAAALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred -----------HHHHHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 0111111111 12356677777666321 12233344557777888777643221 2223333
Q ss_pred C-CCcCeEeEeCCC
Q 038400 466 V-TTLKSLTIGGCP 478 (504)
Q Consensus 466 l-~~L~~L~l~~c~ 478 (504)
. +.|+++++.+.|
T Consensus 305 ~~~~~~~~~~~~~~ 318 (319)
T cd00116 305 PGNELESLWVKDDS 318 (319)
T ss_pred cCCchhhcccCCCC
Confidence 4 567777766554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-11 Score=128.59 Aligned_cols=154 Identities=27% Similarity=0.305 Sum_probs=112.6
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCC--ccccCc-cccCCCCcCeeeccCCCCccccCcceeccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESA--IEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~ 275 (504)
+...+|...+.++..... .. -...+.|+.|-+.++. +..++. .+..++.|++||+++|. .
T Consensus 521 ~~~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------------~ 583 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------------S 583 (889)
T ss_pred chhheeEEEEeccchhhc----cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------------c
Confidence 335566666654432211 11 1234579999998886 555554 47889999999999875 4
Q ss_pred cccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC--CccccCcc
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP--RLISLPPA 353 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~--~l~~l~~~ 353 (504)
+..||..|+.|.+||+|+++++.+...|.++++|..|.+|++..+..+..+|.....|++|++|.+..-. .-...-..
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh
Confidence 6778888999999999999999999999999999999999999988888777777779999999997643 11122233
Q ss_pred CCCCCCccEEEeccCC
Q 038400 354 IKYLSSLETLFLYKCE 369 (504)
Q Consensus 354 l~~l~~L~~L~l~~~~ 369 (504)
+.++.+|+.+......
T Consensus 664 l~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 664 LENLEHLENLSITISS 679 (889)
T ss_pred hhcccchhhheeecch
Confidence 4566666666665443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-11 Score=109.95 Aligned_cols=221 Identities=20% Similarity=0.231 Sum_probs=121.0
Q ss_pred HHHHhcCCCcccEEEeCCCCccc-cCccccCCCCcCeeeccCCCCccccCccee------------ccccccCch-hhhc
Q 038400 220 VESCISKSQFLRVLNLSESAIEV-CPRKIGNLKHMRYLDLSGNSKIKKLPKSIY------------CLELEELPK-DIRH 285 (504)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~------------~~~l~~lp~-~i~~ 285 (504)
++..|+.++.||.|||+.|.|+. -|..+..+..|..|-+.++.+|+++|.... ...+..+++ .+..
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 34444455555555555555542 234444455544444444334444443321 122445443 4678
Q ss_pred cccCCeeeecccccccccc-cCCCCCCccEEeeeCCC------------CcccchhhcCCCCcccEEee-----------
Q 038400 286 LTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCG------------DLEHLFEEIDQLRVLRTLSI----------- 341 (504)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~------------~l~~~~~~~~~l~~L~~L~l----------- 341 (504)
|++|..|.+..|.+..... .+..+..++++.+.-+. .....|.+++.+.-..-..+
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~ 242 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR 242 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence 8999999998887776654 67788888888765543 11111222222111111111
Q ss_pred --------------ccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCc
Q 038400 342 --------------VCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQL 406 (504)
Q Consensus 342 --------------~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 406 (504)
..|......| ..+.++++|+.|++++|..-.+. .........+++|.+.+ .++
T Consensus 243 kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-----------~~aFe~~a~l~eL~L~~-N~l 310 (498)
T KOG4237|consen 243 KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-----------DGAFEGAAELQELYLTR-NKL 310 (498)
T ss_pred hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-----------hhhhcchhhhhhhhcCc-chH
Confidence 1111111112 23678899999999988654432 11122223677777766 355
Q ss_pred ccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccC
Q 038400 407 LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGC 453 (504)
Q Consensus 407 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 453 (504)
+.+...++ ..++.|+.|+|.++....-.|..|..+.+|.+|.+-.+
T Consensus 311 ~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 311 EFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 55554443 56688888888887544455777888888888887654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-11 Score=119.24 Aligned_cols=171 Identities=26% Similarity=0.295 Sum_probs=129.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
..-...|++.|.+..+|..+..+..|..+.++.|. +..+|..+.++..|.+|+++.|+....|..+.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-------------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-------------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhcc-------------ceecchhhhhhhHHHHhhhccchhhcCChhhh
Confidence 33455688888888888888888888888888775 88888899999999999999999988888887
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHD 387 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 387 (504)
.|+ |+.|-+++ ++++.+|+.++.+..|..|+.+.|. +..+|..++++.+|+.|.+..|.-+..+
T Consensus 142 ~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp------------- 205 (722)
T KOG0532|consen 142 DLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLP------------- 205 (722)
T ss_pred cCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCC-------------
Confidence 775 88888877 5788899999988999999999874 8889999999999999999888655432
Q ss_pred CCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 388 RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
.......|..|++++ +++..+|..+ ..+..|++|.|.+++
T Consensus 206 ~El~~LpLi~lDfSc-Nkis~iPv~f--r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 206 EELCSLPLIRLDFSC-NKISYLPVDF--RKMRHLQVLQLENNP 245 (722)
T ss_pred HHHhCCceeeeeccc-Cceeecchhh--hhhhhheeeeeccCC
Confidence 111133455555553 4555566555 455666666665553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-10 Score=109.96 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=19.0
Q ss_pred CCCCccEEEeccCCCCCccCc--CCCCCCCcceEeccc
Q 038400 417 STDTLQNLLIIDCPNFMALPR--SLKDLEALETLFILG 452 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 452 (504)
.+++|++|++..++ +.+++. .+..+++|+.|.+..
T Consensus 299 ~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 299 TFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 45777777776664 322221 244556666666543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-11 Score=112.72 Aligned_cols=233 Identities=19% Similarity=0.218 Sum_probs=140.3
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecc-ccccccc-
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTT-KQKSLQE- 303 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~-~~~~~~~- 303 (504)
..-..++|..|.|+.+|+ .++.+++||.|||++|. ++.| |..+..+.+|-.|-+.+ |.+...+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-------------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-------------ISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc-------------hhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 345678999999999985 68999999999999885 4444 44566666666666654 6665554
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCcccc---c----
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLN---I---- 375 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~---~---- 375 (504)
..|++|..||.|.+.-|...-...+.+..+++|..|.+.+|. +..++. .+..+..++.+.+..++..... |
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 346777777777776654433344566777777777777753 555554 5666666777666655511100 0
Q ss_pred ----cccccC----------------------------------CCCCCCC------CCCCCccceEEEccCCCcccc-h
Q 038400 376 ----NMEMEG----------------------------------EGSNHDR------KNTRPHLRRVVIGEITQLLEL-P 410 (504)
Q Consensus 376 ----~~~~~~----------------------------------~~~~~~~------~~~~~~L~~L~l~~~~~l~~~-~ 410 (504)
.+...+ ....... ....++|+.|++++. .++.+ +
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~ 291 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIED 291 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhh
Confidence 000000 0000000 011225566666653 33333 2
Q ss_pred hhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 411 QWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 411 ~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.|+ ..+..++.|.|..+ .++.+. ..|.++..|+.|++.++....--|..|..+.+|.+|.+-.+|
T Consensus 292 ~aF--e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 292 GAF--EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhh--cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 334 44556666666554 344333 346778888888888875444556677788888888887665
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.6e-11 Score=109.57 Aligned_cols=288 Identities=19% Similarity=0.213 Sum_probs=173.3
Q ss_pred CCeEEEEEEcCCCCcc-chhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCC-cc--ccCccccCCC
Q 038400 176 KRVRHLSFAAANASRK-DFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESA-IE--VCPRKIGNLK 251 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~~~~l~ 251 (504)
.+++.+++.++..... ........++++..|.+.++. .+++......-..++.|+.|++..|. ++ .+-.....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4567777777644222 334445678888888777554 56677777777788999999998853 44 2222445788
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc---ccCCCCCCccEEeeeCCCCcccc--
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE---SGIRSLGSLRCLTISGCGDLEHL-- 326 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~-- 326 (504)
+|+||++++|..++. ..++.+ ...+..++.+..++|...... ..-..+.-+..+++..|..++..
T Consensus 217 kL~~lNlSwc~qi~~-------~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG-------NGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred hHHHhhhccCchhhc-------CcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 999999998875542 112222 223333455544443322111 01122333444555566544432
Q ss_pred hhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCC
Q 038400 327 FEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT 404 (504)
Q Consensus 327 ~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 404 (504)
...-.....|+.|+.++|..++..+ ....+.++|+.|.+++|..+... .....+...+.|+.+++.+|.
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---------~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---------GFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---------hhhhhhcCChhhhhhcccccc
Confidence 1222346677888887777654322 22346678888888888754321 112233344578888888776
Q ss_pred CcccchhhhhcCCCCCccEEEeccCCCCCcc-----CcCCCCCCCcceEecccCccCCc-CccCCCCCCCcCeEeEeCCC
Q 038400 405 QLLELPQWLLQGSTDTLQNLLIIDCPNFMAL-----PRSLKDLEALETLFILGCPKLSS-LSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 405 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~ 478 (504)
...+-...-....++.|+.|.++.|..++.. ..+-.++..|+.+.+++|+.+.+ .-+.+..+++|+.+++.+|.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 5554322223357788999999888766544 34446677899999999987664 22335577899999999888
Q ss_pred chhhh
Q 038400 479 ALSER 483 (504)
Q Consensus 479 ~l~~~ 483 (504)
..++-
T Consensus 438 ~vtk~ 442 (483)
T KOG4341|consen 438 DVTKE 442 (483)
T ss_pred hhhhh
Confidence 76553
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-09 Score=106.36 Aligned_cols=131 Identities=30% Similarity=0.411 Sum_probs=98.2
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCC-CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLK-HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+.....++.|++.++.+..+|.....+. +|+.|++++|. +..+|..++.+++|+.|+++.|.+...
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-------------i~~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-------------IESLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-------------hhhhhhhhhccccccccccCCchhhhh
Confidence 3344778888888888888888888885 88888888775 677777788888888888888888877
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+...+.+++|+.|++++ +.+..+|..++.+..|++|.+.+|. ....+..+.++.++..+.+..+.
T Consensus 179 ~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 179 PKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce
Confidence 76666888888888888 4566777766677778888888764 44455556777777777655543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-10 Score=111.18 Aligned_cols=212 Identities=28% Similarity=0.364 Sum_probs=160.3
Q ss_pred EEEeCCCCccccCcccc--CCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCC
Q 038400 232 VLNLSESAIEVCPRKIG--NLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSL 309 (504)
Q Consensus 232 ~L~l~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l 309 (504)
.|.|++-.+..+|..-. .+.--...|++.|+ +.++|..+..+..|+.+.++.|.+-..+..+.++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-------------~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L 120 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-------------FSELPEEACAFVSLESLILYHNCIRTIPEAICNL 120 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc-------------cccCchHHHHHHHHHHHHHHhccceecchhhhhh
Confidence 45666666666664332 33444567888776 8899999999999999999999988888899999
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 389 (504)
..|..|+++.| .+..+|..+..++ |+.|-+++| +++.+|..++.+..|..|+.+.|...... ...
T Consensus 121 ~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slp------------sql 185 (722)
T KOG0532|consen 121 EALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLP------------SQL 185 (722)
T ss_pred hHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhch------------HHh
Confidence 99999999985 5677888887776 888888875 69999999999999999999998654432 122
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCC---CCC
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDM---HHV 466 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~l 466 (504)
....+|+.|.+.. ..+..+|... .. =.|..|+++ |+.+..+|..|..|..|++|.|.+++ |++-|..+ +..
T Consensus 186 ~~l~slr~l~vrR-n~l~~lp~El--~~-LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 186 GYLTSLRDLNVRR-NHLEDLPEEL--CS-LPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKV 259 (722)
T ss_pred hhHHHHHHHHHhh-hhhhhCCHHH--hC-Cceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccce
Confidence 2233677777776 4566777666 23 347788886 45788899999999999999998775 77766543 234
Q ss_pred CCcCeEeEeCC
Q 038400 467 TTLKSLTIGGC 477 (504)
Q Consensus 467 ~~L~~L~l~~c 477 (504)
.-.|+|++.-|
T Consensus 260 HIFKyL~~qA~ 270 (722)
T KOG0532|consen 260 HIFKYLSTQAC 270 (722)
T ss_pred eeeeeecchhc
Confidence 56678888888
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-09 Score=91.90 Aligned_cols=125 Identities=30% Similarity=0.353 Sum_probs=38.3
Q ss_pred CCcccEEEeCCCCccccCcccc-CCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
...++.|+|+++.|+.+. .++ .+.+|+.|++++|. +..++ ++..+++|+.|++++|.+......
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-------------I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-------------ITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---------------S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC-------------Ccccc-CccChhhhhhcccCCCCCCccccc
Confidence 344566666666666542 343 45666666666654 33332 344566666666666666554333
Q ss_pred C-CCCCCccEEeeeCCCC--cccchhhcCCCCcccEEeeccCCCccccC----ccCCCCCCccEEEeccC
Q 038400 306 I-RSLGSLRCLTISGCGD--LEHLFEEIDQLRVLRTLSIVCCPRLISLP----PAIKYLSSLETLFLYKC 368 (504)
Q Consensus 306 ~-~~l~~L~~L~l~~~~~--l~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~~l~~l~~L~~L~l~~~ 368 (504)
+ ..+++|++|++++|.. +..+ ..+..+++|+.|++.+|+.. ..+ ..+..+|+|+.||-...
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 3 2466666666665431 2222 34566777777777777632 222 13445677777765443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.3e-09 Score=103.00 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=139.9
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccc-cCCeeeecccccccccccCCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLT-SLRAFALTTKQKSLQESGIRSL 309 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~~l 309 (504)
..+++..+.+...+..+..+.+++.|++.++. +..+|.....+. +|+.|++++|.+...+..+..+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-------------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l 162 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNN-------------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcc-------------cccCccccccchhhcccccccccchhhhhhhhhcc
Confidence 35777777776556667777889999999876 777877777785 9999999999988887778999
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 389 (504)
++|+.|++++| .+..+|...+.+++|+.|++++| .+..+|..+..+..|++|.++++...+.. ...
T Consensus 163 ~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~------------~~~ 228 (394)
T COG4886 163 PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELL------------SSL 228 (394)
T ss_pred ccccccccCCc-hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecc------------hhh
Confidence 99999999995 56677777779999999999997 48888887666777999999988533321 111
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
....++..+.+.+ ..+..++..+ ..+++++.|+++++ .++.++. ++.+.+|+.|++++......+|
T Consensus 229 ~~~~~l~~l~l~~-n~~~~~~~~~--~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 229 SNLKNLSGLELSN-NKLEDLPESI--GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhcccccccccCC-ceeeeccchh--ccccccceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence 1112333343332 2233333444 55666777777765 4555555 6777777777777765444444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.5e-09 Score=97.66 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=124.4
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCcc--ccCCCCc
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRK--IGNLKHM 253 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~--~~~l~~L 253 (504)
+++|.+++.++........+....|++++.|+++.+-+. .......+...+++|+.|+++.|.+....++ -..+.+|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456778887776643322357788999999999865432 2334456678899999999999988744333 3467899
Q ss_pred CeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc-cccccccCCCCCCccEEeeeCCCCcccch--hhc
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLF--EEI 330 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~ 330 (504)
+.|.++.|. .+...+-.-...+++|+.|++..|. +........-++.|+.|+|++|+.+. ++ ...
T Consensus 200 K~L~l~~CG-----------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~ 267 (505)
T KOG3207|consen 200 KQLVLNSCG-----------LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKV 267 (505)
T ss_pred heEEeccCC-----------CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccc
Confidence 999999985 1133333344567889999998774 32223334557788999998866443 33 457
Q ss_pred CCCCcccEEeeccCCCccc--cCcc-----CCCCCCccEEEeccCCCcc
Q 038400 331 DQLRVLRTLSIVCCPRLIS--LPPA-----IKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~--l~~~-----l~~l~~L~~L~l~~~~~l~ 372 (504)
+.++.|+.|+++.|. +.+ .|+. ...+++|++|++..|...+
T Consensus 268 ~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcccc
Confidence 788889988888774 332 2332 3567888899888887643
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-08 Score=84.70 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=50.5
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhc-CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCIS-KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
+..+++.|++.++.+.... .++ .+.+|++|++++|.++.++ .+..+++|+.|++++|. +.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-----~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-------------I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-----NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-------------IS 77 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----------------
T ss_pred ccccccccccccccccccc-----chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-------------CC
Confidence 4456788888876654221 133 5678999999999998774 57788999999999886 77
Q ss_pred cCchhhh-ccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCccc---chhhcCCCCcccEEeeccC
Q 038400 278 ELPKDIR-HLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEH---LFEEIDQLRVLRTLSIVCC 344 (504)
Q Consensus 278 ~lp~~i~-~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~---~~~~~~~l~~L~~L~l~~~ 344 (504)
.++..+. .+++|++|++++|.+.... ..+..+++|+.|++.+|+.... =...+..+|+|+.||-...
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 7766553 6899999999988876542 3467789999999998753321 1134567888998876543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-08 Score=91.54 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCCccEEEeccCCCCCcc--CcCCCCCCCcceEecccCc
Q 038400 417 STDTLQNLLIIDCPNFMAL--PRSLKDLEALETLFILGCP 454 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~ 454 (504)
.+-+|.+|+++++. ++.+ -.+++++|+|+.+.+.++|
T Consensus 372 KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 44567777777763 3332 2357788888888888775
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-09 Score=92.92 Aligned_cols=127 Identities=24% Similarity=0.231 Sum_probs=92.4
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
.+.|..|||++|.|+.+-+++.-++.++.|++++|. +..+.. +..+++|++|++++|........-
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-------------i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-------------IRTVQN-LAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-------------eeeehh-hhhcccceEeecccchhHhhhhhH
Confidence 456888888888888888888888888888888875 444433 667888888888888776655444
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~~~ 370 (504)
.++-|.++|.+++| .++.+ .+++++-+|..|++.+|. +..+. ..++++|-|+.+.+.+|+.
T Consensus 349 ~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 56778888888874 33333 567778888888888874 44332 3578888888888888764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-09 Score=97.11 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=95.1
Q ss_pred cCCeeeecccccccc--cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEE
Q 038400 288 SLRAFALTTKQKSLQ--ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETL 363 (504)
Q Consensus 288 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L 363 (504)
.|++||+++..+... ...+..+.+|+.|.+.|......+...+.+-.+|+.|++++|..+++.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555554433221 1224555666666666655444455555566666667776666555322 234556667777
Q ss_pred EeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCc-cCcCCCC
Q 038400 364 FLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMA-LPRSLKD 441 (504)
Q Consensus 364 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~ 441 (504)
++++|.-.+... ......-.++|..|+++||..--.. ........+|+|..|+|++|..++. +...+..
T Consensus 266 NlsWc~l~~~~V---------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 266 NLSWCFLFTEKV---------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred CchHhhccchhh---------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 777664222100 0111111235666666665321111 1112235667777777777766553 2334566
Q ss_pred CCCcceEecccCccCCcCcc---CCCCCCCcCeEeEeCCC
Q 038400 442 LEALETLFILGCPKLSSLSE---DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~---~~~~l~~L~~L~l~~c~ 478 (504)
++.|++|.++.|-.+- |. .+...|+|.+|++.+|-
T Consensus 337 f~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 7777777777774332 22 24456777777777764
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.1e-09 Score=97.75 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=173.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCc-c--ccCccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAI-E--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
..||.|++.++. .........+..+++++..|++.++.. + .+-+.-..+++|++|++..|..++.. .++
T Consensus 138 g~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-------SLK 209 (483)
T ss_pred cccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-------HHH
Confidence 468888887543 344555666777889999999888862 2 22233457889999999987654421 122
Q ss_pred cCchhhhccccCCeeeecccccccc---cccCCCCCCccEEeeeCCCCcc--cchhhcCCCCcccEEeeccCCCccccC-
Q 038400 278 ELPKDIRHLTSLRAFALTTKQKSLQ---ESGIRSLGSLRCLTISGCGDLE--HLFEEIDQLRVLRTLSIVCCPRLISLP- 351 (504)
Q Consensus 278 ~lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~l~- 351 (504)
. -...+++|++|+++.+..... .....++..++.+...||...+ .+-..-+....+..+++..|..++...
T Consensus 210 ~---la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 210 Y---LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred H---HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 1 234678899999987653222 2335666778888777876443 222222345567777777776555332
Q ss_pred -ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 352 -PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 352 -~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
..-..+..|+.|+.++|..+.... .........+|+.+-+.+|..+.+..........+.|+.+++..|.
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~---------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEV---------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHH---------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 223457789999999987643221 1122334468999999999988877666656778899999998886
Q ss_pred CCCcc--CcCCCCCCCcceEecccCccCCcC-----ccCCCCCCCcCeEeEeCCCchhhh
Q 038400 431 NFMAL--PRSLKDLEALETLFILGCPKLSSL-----SEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 431 ~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
.+..- -.--.+++.|+.|.+++|..++.. ...-.+...|..+.+.+||.+++.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 55432 222357899999999999776654 233345678999999999987664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-07 Score=95.11 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=81.1
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcccchhhc
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLEHLFEEI 330 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 330 (504)
.++.|+|++|.. -..+|..+.++++|+.|++++|.+. ..|..++.+++|+.|++++|.....+|+.+
T Consensus 419 ~v~~L~L~~n~L------------~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGL------------RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCc------------cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 367778887641 1246667788888888888887765 455568888888888888887777788888
Q ss_pred CCCCcccEEeeccCCCccccCccCCCC-CCccEEEeccCCCc
Q 038400 331 DQLRVLRTLSIVCCPRLISLPPAIKYL-SSLETLFLYKCESL 371 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~l~~~l~~l-~~L~~L~l~~~~~l 371 (504)
+++++|+.|++++|.....+|..++.+ .++..+++.+|..+
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 888888888888887667788776653 46677888877544
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-08 Score=89.83 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=85.7
Q ss_pred hhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCcc----ccCc-------cccCCCCcCeeeccCC
Q 038400 194 SSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIE----VCPR-------KIGNLKHMRYLDLSGN 261 (504)
Q Consensus 194 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp~-------~~~~l~~L~~L~l~~~ 261 (504)
......+..+..+.++++.++ .........+.+.+.||..++++--.. .+|+ .+..+++|++||||+|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 444555566666777666554 223344445566666666666643211 2332 2334557777777766
Q ss_pred CCccccCcceeccccccCchhhhccccCCeeeeccccccccc--------------ccCCCCCCccEEeeeCCCC----c
Q 038400 262 SKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCGD----L 323 (504)
Q Consensus 262 ~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~----l 323 (504)
-.- ...+..+-.-+.++..|++|.+.+|.+.... .-+..-+.|+.+....|.- -
T Consensus 103 A~G--------~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 103 AFG--------PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccC--------ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 311 1112223334555667777777666543221 1234445666666655321 1
Q ss_pred ccchhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCC
Q 038400 324 EHLFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 324 ~~~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+.+...+...+.|+.+.+..|..- +.+...+.++++|+.|++.+|.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 122334455566666666655321 1223345566677777776653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=81.87 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=31.4
Q ss_pred cccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc
Q 038400 286 LTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352 (504)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 352 (504)
+.++++|++++|.+...| . -..+|++|.+++|..+..+|..+ .++|++|++.+|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 344444444444333332 1 12246666666666665555443 24666666666655555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=91.04 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=66.7
Q ss_pred cCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEec
Q 038400 288 SLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLY 366 (504)
Q Consensus 288 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~ 366 (504)
.++.|+++++... ..+..++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677788877654 445678888999999998877667888888889999999999887667888888889999999988
Q ss_pred cCC
Q 038400 367 KCE 369 (504)
Q Consensus 367 ~~~ 369 (504)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 875
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.8e-06 Score=79.94 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=49.3
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcc
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~ 372 (504)
+..+.++..|++++| .+..+|. -..+|+.|.+.+|..++.+|..+ .++|++|.+++|..+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc
Confidence 445688999999998 7888872 33579999999999999998755 4689999999996553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-06 Score=60.42 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=23.7
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCC
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNS 262 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 262 (504)
++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN 36 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc
Confidence 356777777777776663 55667777777777664
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.9e-08 Score=85.86 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=33.1
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCCCcCeeeccCCCCc
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRYLDLSGNSKI 264 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~ 264 (504)
.|+.++++... .........++.+..|+-|.++|..+. .+-..+.+=.+|+.|++++|..+
T Consensus 186 Rlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 34555555333 223334445556666666666666655 23344555566666777666533
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.6e-07 Score=82.10 Aligned_cols=246 Identities=16% Similarity=0.139 Sum_probs=148.7
Q ss_pred CCeEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccc-------hHHHHHHhcCCCcccEEEeCCCCcc-ccC
Q 038400 176 KRVRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKIS-------QSFVESCISKSQFLRVLNLSESAIE-VCP 244 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~-~lp 244 (504)
+.+..+.++++.+..+ .+...+.+.+.||...++.-..+.. ...+...+...++|++|+|++|-+. ..+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 3567777877766544 2334566667888887764322211 2233445667779999999999876 222
Q ss_pred ----ccccCCCCcCeeeccCCCCccccCcceecccccc--CchhhhccccCCeeeeccccccccc-----ccCCCCCCcc
Q 038400 245 ----RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE--LPKDIRHLTSLRAFALTTKQKSLQE-----SGIRSLGSLR 313 (504)
Q Consensus 245 ----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~ 313 (504)
+-+.++..|+.|.+.+|. ++..-...-...+.+ .-+-+..-++|+.+...+|.....+ ..+...+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 345678899999999873 332111100000111 1122445578999999888765443 3466778999
Q ss_pred EEeeeCCCCc----ccchhhcCCCCcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 314 CLTISGCGDL----EHLFEEIDQLRVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 314 ~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
.+.+..+..- +.+...+..+++|+.|+|.+|.... .+...+..+++|+.|++.+|-.-+
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~------------- 255 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN------------- 255 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc-------------
Confidence 9999876533 2345677889999999999986322 344556678889999999884211
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCc----cCcCCCCCCCcceEecccCc
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMA----LPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L~l~~c~ 454 (504)
.+...+...+ ....|+|+.|.+.+|..... +-..+...|.|+.|.+++|.
T Consensus 256 ------------------~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 ------------------EGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ------------------ccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1111222222 13357777777776643221 12234456778888887774
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-06 Score=78.71 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=25.9
Q ss_pred CCCccEEEeccCCCCC-ccCcCCCCCCCcceEecccCccCCcCc--cCCCCCCCcCeEeEeCCCch
Q 038400 418 TDTLQNLLIIDCPNFM-ALPRSLKDLEALETLFILGCPKLSSLS--EDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 418 ~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l 480 (504)
||++..+.+..|+.-+ .-..+...+|.+-.|.+... ++.+.. +.+..+++|..|.+.+.|.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccc
Confidence 4555555555553111 11223344444444444432 233221 12344555555555555543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=55.90 Aligned_cols=56 Identities=29% Similarity=0.342 Sum_probs=29.8
Q ss_pred CccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccC
Q 038400 311 SLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKC 368 (504)
Q Consensus 311 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~ 368 (504)
+|++|++++| .+..+| ..+..+++|++|++++|. ++.++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555554 344444 344556666666666543 33333 34556666666666655
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.7e-05 Score=51.03 Aligned_cols=35 Identities=34% Similarity=0.498 Sum_probs=27.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNS 262 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 262 (504)
++|++|++++|.++.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 46888888888888888878888888888888874
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.2e-06 Score=82.63 Aligned_cols=106 Identities=27% Similarity=0.329 Sum_probs=63.3
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+..+..|..|++.++.+..+...+..+.+|++|++++|. +..+. ++..++.|+.|++++|.+....
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-------------I~~i~-~l~~l~~L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-------------ITKLE-GLSTLTLLKELNLSGNLISDIS 156 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-------------ccccc-chhhccchhhheeccCcchhcc
Confidence 556677777777777777665556667777777777664 22221 2445555777777777666553
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCC
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 345 (504)
.+..+++|+.+++++|... .+... +..+.+|+.+.+.+|.
T Consensus 157 -~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 157 -GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNS 197 (414)
T ss_pred -CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCc
Confidence 4555667777777665432 22221 3566666666666653
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.1e-05 Score=84.74 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=97.9
Q ss_pred CeEEEEEEcCCCCccchhh-hhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSS-LLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
+++++++.+......+|+. ....+|.|++|.+.+... ....+.....++++|+.||+++++++.+ ..+++|+||+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 5788888776554555543 445689999999986543 3333566788999999999999999877 78899999999
Q ss_pred eeccCCCCccccCcceecccccc--CchhhhccccCCeeeeccccccccc-------ccCCCCCCccEEeeeCCCCcccc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEE--LPKDIRHLTSLRAFALTTKQKSLQE-------SGIRSLGSLRCLTISGCGDLEHL 326 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~l~~~ 326 (504)
|.+.+=. ++. --..+.+|++|+.||+|.......+ ..-..|++|+.||.++...-..+
T Consensus 200 L~mrnLe-------------~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLE-------------FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCC-------------CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9888532 221 1135678899999999854432221 11234777888887764433332
Q ss_pred hh-hcCCCCcccEEeecc
Q 038400 327 FE-EIDQLRVLRTLSIVC 343 (504)
Q Consensus 327 ~~-~~~~l~~L~~L~l~~ 343 (504)
.+ .+...++|+.+.+.+
T Consensus 267 le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAALD 284 (699)
T ss_pred HHHHHHhCccHhhhhhhh
Confidence 22 223345555554443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-06 Score=84.66 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=102.3
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+..++.++++.+.+...-..+..+.+|++|++.+|. ++.+...+..+++|++|++++|.+.... .
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-------------i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-------------IEKIENLLSSLVNLQVLDLSFNKITKLE-G 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-------------hhhcccchhhhhcchheecccccccccc-c
Confidence 4566667778888887655668899999999999886 6666555788999999999999988775 5
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCCCccc
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCESLDL 373 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~l~~ 373 (504)
+..++.|+.|++++|. +..+ ..+..+++|+.+++++|. +..+... ...+.+|+.+.+.++....+
T Consensus 136 l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL-ISDI-SGLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhhccchhhheeccCc-chhc-cCCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 8888999999999964 4433 466779999999999985 4444442 47788999999998876544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.4e-05 Score=82.17 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=93.3
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.+|+.|++++.. .....++...-..++.|+.|.+.|-.+. .+-....+++||+.||+|++. +..
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-------------I~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-------------ISN 187 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-------------ccC
Confidence 578888887643 2455666666778899999999988765 344556788999999999875 555
Q ss_pred CchhhhccccCCeeeeccccccc--ccccCCCCCCccEEeeeCCCCccc------chhhcCCCCcccEEeeccCC
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEH------LFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~------~~~~~~~l~~L~~L~l~~~~ 345 (504)
+ .++++|++|+.|.+.+-.+.. ....+.+|++|+.||+|.-..... ..+.-..||+|+.|+.++..
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 5 688999999999887644332 224678899999999987433221 11223458999999988764
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.7e-05 Score=47.52 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=20.1
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 300 (504)
+|++|++++|. +..+|..+++|++|++|++++|.+.
T Consensus 2 ~L~~L~l~~N~-------------i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQ-------------ITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS--------------SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCC-------------CcccCchHhCCCCCCEEEecCCCCC
Confidence 56666666654 5555555566666666666655544
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.1e-06 Score=83.77 Aligned_cols=142 Identities=22% Similarity=0.187 Sum_probs=92.2
Q ss_pred HhcCCCcccEEEeCCCCccccCccccCCC-CcCeeeccCC---------CCccccCc----------ceeccccccCchh
Q 038400 223 CISKSQFLRVLNLSESAIEVCPRKIGNLK-HMRYLDLSGN---------SKIKKLPK----------SIYCLELEELPKD 282 (504)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~---------~~~~~lp~----------~~~~~~l~~lp~~ 282 (504)
.+-.+..||+|.++++.+... ..+..+. .|+.|.-.+. ...+++-. ++.++.+..+-..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 355689999999999988742 1222221 1333322210 00111111 1225566677778
Q ss_pred hhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccE
Q 038400 283 IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLET 362 (504)
Q Consensus 283 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 362 (504)
+.-++.|++|++++|+..... .+..|+.|++||++.| .+..+|.--..-.+|..|.+++|. ++.+-. +.+|.+|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG-IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeecccH-HHhhhh-HHhhhhhhc
Confidence 888899999999999887765 7889999999999984 466665322122348888888874 555543 677888999
Q ss_pred EEeccCC
Q 038400 363 LFLYKCE 369 (504)
Q Consensus 363 L~l~~~~ 369 (504)
|+++.|-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 9988874
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=2.8e-06 Score=85.55 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=9.7
Q ss_pred CCeEEEEEEcCCCC
Q 038400 176 KRVRHLSFAAANAS 189 (504)
Q Consensus 176 ~~~~~l~l~~~~~~ 189 (504)
+.+|++.+.+++++
T Consensus 109 ~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLS 122 (1096)
T ss_pred cceeeEEecCcchh
Confidence 45777877777664
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=4.1e-05 Score=78.63 Aligned_cols=61 Identities=23% Similarity=0.460 Sum_probs=32.5
Q ss_pred EEeccCCCC-CccCcCCCCCCCcceEecccCccCCcCccC-CC-CCCCcCeEeEeCCCchhhhc
Q 038400 424 LLIIDCPNF-MALPRSLKDLEALETLFILGCPKLSSLSED-MH-HVTTLKSLTIGGCPALSERC 484 (504)
Q Consensus 424 L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~-~l~~L~~L~l~~c~~l~~~~ 484 (504)
+.+.+|+.+ ..+........+|+.|.+..|...+.-.-. .. .+..++.+++.+|+.+....
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 445555555 222222233334778888877654432111 11 15667778888887766543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00042 Score=63.04 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=31.7
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccc-cCCCCcCeeeccCC
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGN 261 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~~~ 261 (504)
-..+..++.+++.++.+. ...-....+.+++.|++|+++.|.+...-..+ ..+.+|+.|-|.+.
T Consensus 67 ~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 344555666666554432 12223344556666666666666554221122 24456666666554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=3.1e-05 Score=79.50 Aligned_cols=228 Identities=22% Similarity=0.285 Sum_probs=109.5
Q ss_pred hHHHHHHhcCCCcccEEEeCCCC-ccc--cCccccCCCCcCeeeccCC-CCccccCcceeccccccCchhhhccccCCee
Q 038400 217 QSFVESCISKSQFLRVLNLSESA-IEV--CPRKIGNLKHMRYLDLSGN-SKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292 (504)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~-~~~--lp~~~~~l~~L~~L~l~~~-~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L 292 (504)
..........++.|+.|.+.++. +.. +-.....+++|+.|++++| ..+...+ .........+.+|+.|
T Consensus 177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~~~~~~L~~l 248 (482)
T KOG1947|consen 177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP--------LLLLLLLSICRKLKSL 248 (482)
T ss_pred HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch--------hHhhhhhhhcCCcCcc
Confidence 33344444456777777777664 332 3344556777777777763 1111100 0011123344666777
Q ss_pred eeccccc-ccc--cccCCCCCCccEEeeeCCCCcc--cchhhcCCCCcccEEeeccCCCccc--cCccCCCCCCccEEEe
Q 038400 293 ALTTKQK-SLQ--ESGIRSLGSLRCLTISGCGDLE--HLFEEIDQLRVLRTLSIVCCPRLIS--LPPAIKYLSSLETLFL 365 (504)
Q Consensus 293 ~l~~~~~-~~~--~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L~l 365 (504)
+++.+.. ... ......+++|++|.+.+|..++ .+......+++|++|++++|..++. +.....++++|+.|.+
T Consensus 249 ~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 249 DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 7765542 111 1111236677777766666432 2223334566677777777665421 2223334555555444
Q ss_pred ccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCccc-chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCC
Q 038400 366 YKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLE-LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEA 444 (504)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 444 (504)
..+.. .+.++.+.+.++..... .........+++++.+.+..|. .....
T Consensus 329 ~~~~~---------------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~-------- 378 (482)
T KOG1947|consen 329 LSLNG---------------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG-------- 378 (482)
T ss_pred hhcCC---------------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc--------
Confidence 33321 12233333333322220 1111112445556666555553 22111
Q ss_pred cceEecccCccC-CcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 445 LETLFILGCPKL-SSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 445 L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
..+.+.+|+.+ ..+.........++.|++..|...+..
T Consensus 379 -~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 379 -LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred -hHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 14556677766 333333334444899999999876653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=3.8e-05 Score=61.50 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=60.3
Q ss_pred hcCCCcccEEEeCCCCccccCcccc-CCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+.+..+|...+|++|.+..+|+.+. ..+.++.|++++|. +.++|.++..++.|+.|+++.|.+...
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-------------isdvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-------------ISDVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-------------hhhchHHHhhhHHhhhcccccCccccc
Confidence 4455677777788888777776554 34467777777765 777777777888888888887777777
Q ss_pred cccCCCCCCccEEeeeCC
Q 038400 303 ESGIRSLGSLRCLTISGC 320 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~ 320 (504)
+..+..|.+|-.|+.-++
T Consensus 116 p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hHHHHHHHhHHHhcCCCC
Confidence 766767777777776654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00013 Score=58.61 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=75.4
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
..+....+|...+++++.++ .+++.+..+++.++.|++++|.+..+|..+..++.|+.|+++.|.
T Consensus 47 y~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~------------ 111 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP------------ 111 (177)
T ss_pred HHHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc------------
Confidence 33455677888888877654 555666678889999999999999999999999999999999886
Q ss_pred ccccCchhhhccccCCeeeeccccccccc
Q 038400 275 ELEELPKDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 275 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+...|+.+..|.+|-.|+..+|.....+
T Consensus 112 -l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 112 -LNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred -cccchHHHHHHHhHHHhcCCCCccccCc
Confidence 7778888888999999988877655443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.003 Score=54.45 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=47.4
Q ss_pred hccccCCeeeecccccccccccCCC-CCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccc---cCccCCCC
Q 038400 284 RHLTSLRAFALTTKQKSLQESGIRS-LGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLIS---LPPAIKYL 357 (504)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~---l~~~l~~l 357 (504)
..++.|.+|.+.+|.+..+.+.+.. +++|+.|.+.+|+ +.++- ..+..+++|++|.+-+|+.... -.-.+.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3556666666666666555555443 4557777776643 32221 2345567777777777652211 01235567
Q ss_pred CCccEEEeccC
Q 038400 358 SSLETLFLYKC 368 (504)
Q Consensus 358 ~~L~~L~l~~~ 368 (504)
++|+.|+..+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 77777777654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00036 Score=62.60 Aligned_cols=242 Identities=17% Similarity=0.043 Sum_probs=116.9
Q ss_pred hhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCcc----ccC-------ccccCCCCcCeeeccCCCC
Q 038400 196 LLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIE----VCP-------RKIGNLKHMRYLDLSGNSK 263 (504)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp-------~~~~~l~~L~~L~l~~~~~ 263 (504)
.+..+..+..++++++.++ .....+...+.+-++|++.++++-... .+| +.+-++++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3444566667777766554 223344455666667777766653221 222 2345677777777777643
Q ss_pred ccccCcceeccccccCchhhhccccCCeeeeccccccccc--------------ccCCCCCCccEEeeeCCCCcccch--
Q 038400 264 IKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCGDLEHLF-- 327 (504)
Q Consensus 264 ~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~l~~~~-- 327 (504)
-.+.| ..|-.-|.+-+.|+||.+++|...... .-+.+-+.|++.....| .+...+
T Consensus 105 g~~~~--------e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~ 175 (388)
T COG5238 105 GSEFP--------EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKE 175 (388)
T ss_pred Ccccc--------hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHH
Confidence 22222 222334556677777777766543221 11334466776666553 233222
Q ss_pred ---hhcCCCCcccEEeeccCCCcc----cc-CccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEE
Q 038400 328 ---EEIDQLRVLRTLSIVCCPRLI----SL-PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVV 399 (504)
Q Consensus 328 ---~~~~~l~~L~~L~l~~~~~l~----~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 399 (504)
..+..-.+|+.+.+..|..-. .+ -..+.++.+|+.|++.+|.....- ..........-+.|+.|.
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g-------S~~La~al~~W~~lrEL~ 248 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG-------SRYLADALCEWNLLRELR 248 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh-------HHHHHHHhcccchhhhcc
Confidence 122333567777776654211 00 112345677777777776421100 000000001111356666
Q ss_pred EccCC----CcccchhhhhcCCCCCccEEEeccCCCCCc------cCcC-CCCCCCcceEecccC
Q 038400 400 IGEIT----QLLELPQWLLQGSTDTLQNLLIIDCPNFMA------LPRS-LKDLEALETLFILGC 453 (504)
Q Consensus 400 l~~~~----~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~------l~~~-~~~l~~L~~L~l~~c 453 (504)
+.+|- +...+-..+.....|+|..|...++..-.. ++.. -..+|-|..|.+.++
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 66652 222222222223456666666555432111 1211 145677777777766
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0019 Score=57.92 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=52.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc--ccc
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ--ESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~ 305 (504)
..|..|++.+..++++ ..+..|++|++|+++.|+.-. ...++.-..++++|++|++++|.+..+ ...
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~----------~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRV----------SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccc----------cccceehhhhCCceeEEeecCCccccccccch
Confidence 3444444555444432 234456677777777663111 223333344557777777776665432 123
Q ss_pred CCCCCCccEEeeeCCCCcccc---hhhcCCCCcccEEeeccC
Q 038400 306 IRSLGSLRCLTISGCGDLEHL---FEEIDQLRVLRTLSIVCC 344 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~ 344 (504)
+..+.+|..|++++|.....- -..+.-+++|++|+-.+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 455566666777666433200 012333455666555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.013 Score=50.60 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=18.0
Q ss_pred hcCCCCcccEEeeccCCCccccCccCC-CCCCccEEEeccCC
Q 038400 329 EIDQLRVLRTLSIVCCPRLISLPPAIK-YLSSLETLFLYKCE 369 (504)
Q Consensus 329 ~~~~l~~L~~L~l~~~~~l~~l~~~l~-~l~~L~~L~l~~~~ 369 (504)
.+..++.|.+|.+..|. ++.+.+.+. .+++|..|.+.+|+
T Consensus 59 ~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc
Confidence 34445555555555443 333322222 23445555555543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0055 Score=32.68 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=12.0
Q ss_pred ccEEEeCCCCccccCccccC
Q 038400 230 LRVLNLSESAIEVCPRKIGN 249 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~ 249 (504)
|++|++++|.++.+|+.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 56666666666666655443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.00089 Score=60.40 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCC
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNS 262 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 262 (504)
+.+++.|++-+++.. + -....+|+.|+||.|+-|.|+++ +.+..+.+|+.|.|+.|.
T Consensus 18 l~~vkKLNcwg~~L~--D---Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--D---ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC 74 (388)
T ss_pred HHHhhhhcccCCCcc--H---HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc
Confidence 445666666655533 2 23455788888888888888766 446677778877777664
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.029 Score=50.81 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=99.0
Q ss_pred eEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccc-------hHHHHHHhcCCCcccEEEeCCCCcc-ccCc-
Q 038400 178 VRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKIS-------QSFVESCISKSQFLRVLNLSESAIE-VCPR- 245 (504)
Q Consensus 178 ~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~- 245 (504)
+..+.++++.+.++ .+...+.+-++|+...++.-..+.. .......+-++++|+..+|++|.|. ..|+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 45566666655443 2233444556666666653322211 1223345667888888888888776 4444
Q ss_pred ---cccCCCCcCeeeccCCCCccccCcceeccccccC--chhhhccccCCeeeeccccccccc-----ccCCCCCCccEE
Q 038400 246 ---KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL--PKDIRHLTSLRAFALTTKQKSLQE-----SGIRSLGSLRCL 315 (504)
Q Consensus 246 ---~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L 315 (504)
-+.+-.+|..|.+++|. ++.+-..=....+.++ -+-..+-+.|+...+..|....-+ ..+..-.+|+.+
T Consensus 112 L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 34566778888888763 3322110000000000 112234466777777665543222 123333567777
Q ss_pred eeeCCCCccc-----chhhcCCCCcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCC
Q 038400 316 TISGCGDLEH-----LFEEIDQLRVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 316 ~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~ 369 (504)
.+..|..-.+ +...+..+++|+.|++.+|.... .+...+...+.|+.|.+.+|-
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 7766543222 12234456778888888775321 223344555667778777773
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.025 Score=50.96 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=42.8
Q ss_pred cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc--cc-cccccCCCCCCccEEeeeCCCC
Q 038400 246 KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ--KS-LQESGIRSLGSLRCLTISGCGD 322 (504)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~--~~-~~~~~~~~l~~L~~L~l~~~~~ 322 (504)
....+.+|+.|++.++. .+.+..+| .|++|+.|.++.|. .. ..+.-+..+++|++|++++|+.
T Consensus 38 l~d~~~~le~ls~~n~g----------ltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVG----------LTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccccccchhhhhhhccc----------eeecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33445566666666543 11233333 56677777777552 21 1222334457777777776542
Q ss_pred c--ccchhhcCCCCcccEEeeccCC
Q 038400 323 L--EHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 323 l--~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
- ..+ ..+..+.+|..|++.+|.
T Consensus 104 ~~lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 104 KDLSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred cccccc-chhhhhcchhhhhcccCC
Confidence 1 111 223445566666666664
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.033 Score=29.61 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=4.0
Q ss_pred ccEEeeeCC
Q 038400 312 LRCLTISGC 320 (504)
Q Consensus 312 L~~L~l~~~ 320 (504)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.047 Score=26.92 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=6.0
Q ss_pred cccEEEeCCCCcccc
Q 038400 229 FLRVLNLSESAIEVC 243 (504)
Q Consensus 229 ~L~~L~l~~~~~~~l 243 (504)
+|++|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.018 Score=49.76 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=18.9
Q ss_pred CCCCccEEEeccCCCCCcc-CcCCCCCCCcceEecccCc
Q 038400 417 STDTLQNLLIIDCPNFMAL-PRSLKDLEALETLFILGCP 454 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 454 (504)
..++|+.|+|++|+.+++- -.++..+++|+.|.|.+.+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4455555555555555432 2234455555555555443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.47 Score=38.51 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=12.0
Q ss_pred cccCCeeeecccccccccccCCCCCCccEEeee
Q 038400 286 LTSLRAFALTTKQKSLQESGIRSLGSLRCLTIS 318 (504)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 318 (504)
+++|+.+.+.++........+..+++|+.+.+.
T Consensus 57 ~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 57 CKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccccccccccccccccccccccccC
Confidence 334444444332222222334445555555553
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.0088 Score=54.20 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=63.8
Q ss_pred cCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc-
Q 038400 225 SKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE- 303 (504)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~- 303 (504)
+.+.+.+.|+.-||.+..+ +-..+++.|++|.|+-|+ +..|- .+..+++|++|+++.|.+....
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-------------IssL~-pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-------------ISSLA-PLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-------------cccch-hHHHHHHHHHHHHHhcccccHHH
Confidence 3456677788888887754 345678888888888664 33332 3567788888888877665442
Q ss_pred -ccCCCCCCccEEeeeCCCCcccch-----hhcCCCCcccEEe
Q 038400 304 -SGIRSLGSLRCLTISGCGDLEHLF-----EEIDQLRVLRTLS 340 (504)
Q Consensus 304 -~~~~~l~~L~~L~l~~~~~l~~~~-----~~~~~l~~L~~L~ 340 (504)
..+.++++|+.|.|..|.-...-+ ..+.-|++|+.|+
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 345677777777777655443332 1334566666664
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.43 Score=38.76 Aligned_cols=105 Identities=15% Similarity=0.303 Sum_probs=54.6
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceec
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYC 273 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 273 (504)
..+.++.+|+.+.+.. ... .+....|..+..|+.+.+.++ +..++. .+.++.+|+.+.+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~---~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~------------ 68 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK---KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN------------ 68 (129)
T ss_dssp TTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST------------
T ss_pred HHHhCCCCCCEEEECC-Cee---EeChhhccccccccccccccc-ccccceeeeeccccccccccccc------------
Confidence 4566777888888763 222 233445777878888888775 665553 5667778888888642
Q ss_pred cccccCchh-hhccccCCeeeecccccccccccCCCCCCccEEeeeC
Q 038400 274 LELEELPKD-IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISG 319 (504)
Q Consensus 274 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 319 (504)
+..++.. +..+++|+.+.+..+........+.+. +|+.+.+..
T Consensus 69 --~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 69 --LKSIGDNAFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp --T-EE-TTTTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred --ccccccccccccccccccccCccccEEchhhhcCC-CceEEEECC
Confidence 3333332 445788888888655333444456665 777776643
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.015 Score=51.27 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=37.8
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+...++||++.+.+..+-..+.-+..|..|+++.+. +.-+|+..+.+..++++++..|.....|..+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-------------~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-------------IKFLPKDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-------------HhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence 344445555544444444444444444445554433 4444444445555555555444444444444
Q ss_pred CCCCCccEEeeeC
Q 038400 307 RSLGSLRCLTISG 319 (504)
Q Consensus 307 ~~l~~L~~L~l~~ 319 (504)
++++.++.++..+
T Consensus 108 ~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 108 KKEPHPKKNEQKK 120 (326)
T ss_pred cccCCcchhhhcc
Confidence 4555555554444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.0082 Score=52.93 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=72.6
Q ss_pred ccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcc
Q 038400 245 RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLE 324 (504)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 324 (504)
..+.....-+.||++.|+ +..+...+..++.|..|+++.+.+...|.+++++..+..++... ++.+
T Consensus 36 ~ei~~~kr~tvld~~s~r-------------~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~ 101 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNR-------------LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHS 101 (326)
T ss_pred hhhhccceeeeehhhhhH-------------HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchh
Confidence 356677788889998775 66777778888999999999999988888888888888888766 4677
Q ss_pred cchhhcCCCCcccEEeeccCCC
Q 038400 325 HLFEEIDQLRVLRTLSIVCCPR 346 (504)
Q Consensus 325 ~~~~~~~~l~~L~~L~l~~~~~ 346 (504)
..|.+.+..++++++++.++..
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hCCccccccCCcchhhhccCcc
Confidence 7899999999999999888763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.5 Score=46.13 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCC-hh--hhhhhhh-ccCCchhHHHhh-hhCCChhhHhhhhhhcccCCCCccC
Q 038400 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTD-EH--DWEYLEQ-KESGILPILRLS-YYQLPPHLKQCVAYCSIFPKDYPFD 91 (504)
Q Consensus 17 ~i~~~iv~~c~GlPLal~~ig~~L~~~~~-~~--~W~~~~~-~~~~i~~~L~~s-y~~L~~~~k~~fl~~a~fp~~~~i~ 91 (504)
+...++.+.|+|.|+++..++..+..... .. .|. ... ....+...+.-. ++.||++.+..++..|+++ .++
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~ 281 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSLHDSARR-LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMN 281 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHh-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCC
Confidence 34578999999999999999988864332 11 111 111 123455554444 8999999999999999986 334
Q ss_pred hHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHHHHHh
Q 038400 92 SFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVA 160 (504)
Q Consensus 92 ~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~~~~~ 160 (504)
. .+..... .. +.+...+.+|.+.+++....+ +....+..|++++++.....
T Consensus 282 ~-~l~~~l~-----~~--------~~~~~~L~~l~~~~l~~~~~~----~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 282 D-ALIVRVT-----GE--------ENGQMRLEELERQGLFIQRMD----DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred H-HHHHHHc-----CC--------CcHHHHHHHHHHCCCeeEeec----CCCCEEehhHHHHHHHHHHH
Confidence 2 2333221 11 113567889999998653221 11236778999999986543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.093 Score=45.53 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=47.8
Q ss_pred CCCCCccEEEeccCCCCCcc--CcCCCCCCCcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCCch
Q 038400 416 GSTDTLQNLLIIDCPNFMAL--PRSLKDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 416 ~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l 480 (504)
..++.++.|.+.+|..+... ...-+-.++|+.|+|++|+.+++-. ..+..+++|+.|.+.+.|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 45677888888888877643 1112356899999999999998743 23567899999999988753
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.33 E-value=0.7 Score=25.50 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=8.3
Q ss_pred cccEEEeCCCCccccCc
Q 038400 229 FLRVLNLSESAIEVCPR 245 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~ 245 (504)
+|++|+|.+|.+..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44455555555544443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.33 E-value=0.7 Score=25.50 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=8.3
Q ss_pred cccEEEeCCCCccccCc
Q 038400 229 FLRVLNLSESAIEVCPR 245 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~ 245 (504)
+|++|+|.+|.+..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44455555555544443
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=84.22 E-value=0.6 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.741 Sum_probs=12.9
Q ss_pred CCCcCeEeEeCCCchhhh
Q 038400 466 VTTLKSLTIGGCPALSER 483 (504)
Q Consensus 466 l~~L~~L~l~~c~~l~~~ 483 (504)
+++|++|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467778888888777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 504 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 6e-05 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 4e-48
Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 36/215 (16%)
Query: 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDE----------HDWEY 51
+ +L + I+K+C G PL V +G+LL + ++
Sbjct: 297 LFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKR 352
Query: 52 LEQKES----GILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQS 107
+ + S + + +S L +K SI KD + L W
Sbjct: 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET---- 408
Query: 108 HNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVV 167
EE+ED L+E +++S G F + +HDL D + +
Sbjct: 409 ----EEVED----ILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKNCSQLQDL 456
Query: 168 NSDCQSIPKRVRHLSFAAANASRKDFSSLLSDLGR 202
+ + I + R+ + ++D + L
Sbjct: 457 HK--KIITQFQRYHQPHTLSPDQEDCMYWYNFLAY 489
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 5e-39
Identities = 28/219 (12%), Positives = 57/219 (26%), Gaps = 32/219 (14%)
Query: 3 CAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKES----- 57
A+ + + ++ G P + T E + + ES
Sbjct: 303 EAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVG 362
Query: 58 ----------GILPILRLSYYQLPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQS 107
+ L+ L + +A+ + P
Sbjct: 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDI---C 419
Query: 108 HNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVAKDEFL-- 165
N+ E+L+D LK L R M + FK+ ++H V + +
Sbjct: 420 SNEEEQLDDEVADRLKRLSKRGALLS----GKRMPVLTFKIDHIIHMFLKHVVDAQTIAN 475
Query: 166 --------VVNSDCQSIPKRVRHLSFAAANASRKDFSSL 196
++ ++ RH+ R S +
Sbjct: 476 GISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEM 514
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 59/286 (20%), Positives = 94/286 (32%), Gaps = 61/286 (21%)
Query: 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL--------- 274
+ L L + P + L H++++ + + +LP ++
Sbjct: 77 DATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLA 135
Query: 275 --ELEELPKDIRHLTSLRAFALT--TKQKSLQES--------GIRSLGSLRCLTISGCGD 322
L LP I L LR ++ + L E + L +L+ L + G
Sbjct: 136 RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG- 194
Query: 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGE 382
+ L I L+ L++L I L +L PAI +L LE L L C
Sbjct: 195 IRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGC-------------- 239
Query: 383 GSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDL 442
T L P G L+ L++ DC N + LP + L
Sbjct: 240 ---------------------TALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 443 EALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSERCKRPT 488
LE L + GC LS L + + + + RP
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 8e-19
Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 213 EKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIY 272
E ++ + L+ L L + I P I NL++++ L + +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP---------- 217
Query: 273 CLELEELPKDIRHLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLFEEI 330
L L I HL L L +L+ L+ L + C +L L +I
Sbjct: 218 ---LSALGPAIHHLPKLEELDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 331 DQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDL 373
+L L L + C L LP I L + + + L
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 49/261 (18%), Positives = 93/261 (35%), Gaps = 35/261 (13%)
Query: 240 IEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI--------YCLELEELPKDIRHLTSLRA 291
+ + L G++ ++ + + + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 292 FALTTKQ-KSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLIS 349
T + K+ + + L + L ++ +L L+ ++I L+
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLME 118
Query: 350 LPPAIKYLSSLETLFLYKC--ESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLL 407
LP ++ + LETL L + +L +I + LR + I +L
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASI-----ASLNR---------LRELSIRACPELT 164
Query: 408 ELP----QWLLQGSTDTLQNL--LIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461
ELP G L NL L ++ +LP S+ +L+ L++L I LS+L
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP 223
Query: 462 DMHHVTTLKSLTIGGCPALSE 482
+HH+ L+ L + GC AL
Sbjct: 224 AIHHLPKLEELDLRGCTALRN 244
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-13
Identities = 32/256 (12%), Positives = 76/256 (29%), Gaps = 52/256 (20%)
Query: 26 CGGIPLAVRALGSLLYCSTDEHD-WEYLEQ-KESGILPILRLSYYQLPPH-LKQCVAYCS 82
P + + + D W+ + + I+ S L P ++ S
Sbjct: 323 LTTNPRRLSIIAESI---RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 83 IFPKDYPFDSFSLVQFW---------------MAHGLLQSHNKNE--ELEDIGMRYLKEL 125
+FP + L W + L++ K + I + +L
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 126 LSRSFFHDL--------------TFGMLGMGMFFFKMHDLMHDLALLVAKDEFLVVNS-- 169
+ H + +F+ H + H L + + +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-H-IGHHLKNIEHPERMTLFRMVF 497
Query: 170 -DCQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTD---DEKIS--QSFVESC 223
D + + +++RH S A + + L L + + D + ++ F+
Sbjct: 498 LDFRFLEQKIRHDSTAW--NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 224 ---ISKSQFLRVLNLS 236
+ S++ +L ++
Sbjct: 556 EENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 71/463 (15%), Positives = 126/463 (27%), Gaps = 176/463 (38%)
Query: 122 LKELLSRSFFHDLTFGMLGMG----------------MFFFKMH-----------DLMHD 154
L EL L G+LG G FK+ ++
Sbjct: 144 LLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 155 LALLVAK-DEFLVVNSD--------CQSIPKRVRHLSFAAANASRKDF-SSL--LSDL-- 200
L L+ + D SD SI +R L K + + L L ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCLLVLLNVQN 255
Query: 201 --------GRVRTIVFSTDD----------------EKISQSFVESCISKSQFLRVLN-- 234
+ ++ + + S + KS L+ L+
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCR 314
Query: 235 ---LSESAIEVCPRKIG----NLKHM-----RYLDLSGNSKIKKLPKSIYCLELEEL--- 279
L + PR++ +++ + ++ + + S+ LE E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 280 -------PKDI--------------------RHLTSLRAFALTTKQKSLQESGIRSLGSL 312
P + L ++L KQ I S+
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 313 RCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY--------LSSLE--- 361
+ + L +D + +T + P +Y L ++E
Sbjct: 435 LKVKLENEYALHRSI--VDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 362 --TLF--LYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGS 417
TLF ++ LD +E +K +R + W GS
Sbjct: 489 RMTLFRMVF----LDFRF-LE---------QK-----IRH----------DSTAWNASGS 519
Query: 418 -TDTLQNL-----LIID-CPNFMALPRSLKD-LEALETLFILG 452
+TLQ L I D P + L ++ D L +E I
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 52/274 (18%), Positives = 80/274 (29%), Gaps = 69/274 (25%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNS----------------KIKKLPKSIYC 273
LR L +S + + P L + ++ LP
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142
Query: 274 LE--------LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325
L+ L LP L L A + SL L+ L++S L
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLW--AYNNQLTSLPM----LPSGLQELSVSDN-QLAS 195
Query: 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLY--KCESLDLNINMEMEGEG 383
L +L L + RL SLP S L+ L + + SL + +
Sbjct: 196 LPTLPSELYKLWAYNN----RLTSLPALP---SGLKELIVSGNRLTSLPVLPS------- 241
Query: 384 SNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN--FMALPRSLKD 441
L+ +++ +L LP LL + LP SL
Sbjct: 242 ----------ELKELMVSG-NRLTSLPML--------PSGLLSLSVYRNQLTRLPESLIH 282
Query: 442 LEALETLFILGCPKLSSLSEDMHHVTTLKSLTIG 475
L + T+ + G P LS + T G
Sbjct: 283 LSSETTVNLEGNP-LSERTLQALREITSAPGYSG 315
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 52/262 (19%), Positives = 76/262 (29%), Gaps = 66/262 (25%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
VLN+ ES + P + H+ L + N+ L LP L +L
Sbjct: 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-------------LTSLPALPPELRTL 86
Query: 290 RAF--------ALTTKQKSLQESGIR------SLGSLRCLTISGCGDLEHLFEEIDQLRV 335
L L L L I G L L L+
Sbjct: 87 EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQE 145
Query: 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHL 395
L V +L SLP L L + SL + L
Sbjct: 146 LS----VSDNQLASLPALPSELCKLWAYNN-QLTSLPMLP-----------------SGL 183
Query: 396 RRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPK 455
+ + + + QL LP + L L + +LP L+ L I+ +
Sbjct: 184 QELSVSD-NQLASLPTLPSE-----LYKLWAYNN-RLTSLPALPSGLKEL----IVSGNR 232
Query: 456 LSSLSEDMHHVTTLKSLTIGGC 477
L+SL + LK L + G
Sbjct: 233 LTSLPVLP---SELKELMVSGN 251
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 8e-11
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 34/169 (20%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE--------LEELPK 281
L L+ + P + + L+++ N + LP+ LE L LP+
Sbjct: 61 FSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLPELPASLEYLDACDNRLSTLPE 117
Query: 282 DIRHLTSLRAF--------ALTTKQKSLQESGIR------SLGSLRCLTISGCGDLEHLF 327
L L L + + + SL L++ L L
Sbjct: 118 LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTFLP 176
Query: 328 EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN 376
E + L L V L SLP E ++ N
Sbjct: 177 ELPESLEALD----VSTNLLESLPAVPVRNHHSEETEIF----FRCREN 217
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 6e-10
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 30/151 (19%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE--------LEELPK 281
L L+ ++ + P +LKH LD+ N ++ LP+ LE L LP+
Sbjct: 102 LEYLDACDNRLSTLPELPASLKH---LDVDNN-QLTMLPELPALLEYINADNNQLTMLPE 157
Query: 282 DIRHLTSLRAFALTTKQKSLQESGIRSL----GSLRCLTISGCGDLEHLFEEIDQLRVLR 337
L L S++ + + L SL L +S LE L +
Sbjct: 158 LPTSLEVL----------SVRNNQLTFLPELPESLEALDVSTNL-LESLPAVPVRNHHSE 206
Query: 338 TLSI---VCCPRLISLPPAIKYLSSLETLFL 365
I R+ +P I L T+ L
Sbjct: 207 ETEIFFRCRENRITHIPENILSLDPTCTIIL 237
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 45/278 (16%), Positives = 81/278 (29%), Gaps = 71/278 (25%)
Query: 222 SCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI---------Y 272
S K + + + + ++ + L L+ + LP ++
Sbjct: 31 SAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRL-NLSSLPDNLPPQITVLEIT 88
Query: 273 CLELEELPKDIRHLTSLRAF--ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEI 330
L LP+ L L A L+ +L E SL+ L + L L E
Sbjct: 89 QNALISLPELPASLEYLDACDNRLS----TLPE----LPASLKHLDVDNN-QLTMLPELP 139
Query: 331 DQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC------------ESLDLNINME 378
L + +L LP +SLE L + E+LD++ N
Sbjct: 140 ALLEYIN----ADNNQLTMLPELP---TSLEVLSVRNNQLTFLPELPESLEALDVSTN-- 190
Query: 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ-GSTDTLQNLLIIDCPNFMALPR 437
L LP ++ ++ + +P
Sbjct: 191 --------------------------LLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224
Query: 438 SLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIG 475
++ L+ T+ + P LSS + T + G
Sbjct: 225 NILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHG 261
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 41/257 (15%), Positives = 81/257 (31%), Gaps = 33/257 (12%)
Query: 230 LRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
+ L+L+ + P IG L ++ L + + EL ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPD------MSE 377
Query: 289 LRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP-RL 347
R + K + + L L + + E + D L+ I R+
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 348 ISLPPAIKYLSSLETLFLYKC--ESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQ 405
+ AI+ L+ L+ ++ ++ ++ E +N
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN-------- 489
Query: 406 LLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHH 465
L L ++ + +CPN LP L DL L++L + C + S ++
Sbjct: 490 ---LKD---------LTDVELYNCPNMTQLPDFLYDLPELQSLN-IACNRGISAAQLKAD 536
Query: 466 VTTLKSLTIGGCPALSE 482
T L P +
Sbjct: 537 WTRLAD-DEDTGPKIQI 552
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 7e-10
Identities = 25/170 (14%), Positives = 43/170 (25%), Gaps = 42/170 (24%)
Query: 217 QSFVESCISKSQFLRVLNLS--------ESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLP 268
Q F + + + LS E++++ N + +DL N K+ L
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS 744
Query: 269 KSIYC-----LE--------LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCL 315
L P + + L+AF + R R L
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI---------RHQRDAEGNRIL 795
Query: 316 TISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFL 365
I L L I + + + L L +
Sbjct: 796 RQ--------WPTGITTCPSLIQLQIGSN-DIRKVDEKL--TPQLYILDI 834
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 45/304 (14%), Positives = 87/304 (28%), Gaps = 58/304 (19%)
Query: 222 SCISKSQFLRVLNLSE-SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL------ 274
+ + + N E NLK + ++L + +LP +Y L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520
Query: 275 ---------------ELEELPKDIRHLTSLRAFALTTKQ-KSL-QESGIRSLGSLRCLTI 317
+ L D ++ F + + + ++ + L L
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580
Query: 318 SGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAI-KYLSSLETLFLYKC-------- 368
+ HL E L L + ++ +P + +E L
Sbjct: 581 VHN-KVRHL-EAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637
Query: 369 ---------ESLDLNINM--EMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGS 417
S+D + N S + V + ++ + P L
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPTELFATG 696
Query: 418 TDTLQ-------NLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLK 470
+ + + I + + K+ L T+ L KL+SLS+D TTL
Sbjct: 697 S-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI-DLRFNKLTSLSDDF-RATTLP 753
Query: 471 SLTI 474
L+
Sbjct: 754 YLSN 757
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 22/153 (14%)
Query: 233 LNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE--------LEELPKDIR 284
+ + I + I L ++ + + + ++ + E
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWS 488
Query: 285 HLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISG---------CGDLEHLFEEIDQLR 334
+L L L Q + L L+ L I+ D L ++ D
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 335 VLRTLSIVCCPRLISLPP--AIKYLSSLETLFL 365
++ + L P +++ + L L
Sbjct: 549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDC 580
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 34/266 (12%), Positives = 72/266 (27%), Gaps = 58/266 (21%)
Query: 221 ESCISKSQFLRVLNLSESAIEVCPRK--IGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278
E + + + L S + ++ P ++ M +D S N KI ++I C
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISC----- 665
Query: 279 LPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGC-------GDLEHLFEEI 330
D + L+ + + + + + +S L+
Sbjct: 666 -SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724
Query: 331 DQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKN 390
+L T+ + +L SL + ++L L ++D++ N
Sbjct: 725 KNTYLLTTIDLRFN-KLTSLSDDFR-ATTLPYL-----SNMDVSYN-------------- 763
Query: 391 TRPHLRRV--VIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETL 448
+QL P + +L L
Sbjct: 764 ---CFSSFPTQPLNSSQLKAF---------GIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 449 FILGCPKLSSLSEDMHHVTTLKSLTI 474
+G + + E + L I
Sbjct: 812 Q-IGSNDIRKVDEKL-----TPQLYI 831
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 35/260 (13%), Positives = 76/260 (29%), Gaps = 36/260 (13%)
Query: 224 ISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD 282
++ + + L+L P IG L + L L + E PK
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH--------GEKVNERLFGPKG 128
Query: 283 IRHLTSLRAFALTT---KQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTL 339
I S ++ + L I+ + + + +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188
Query: 340 SIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVV 399
+ + + A+ L+ L ++ + NI E E S + ++
Sbjct: 189 GQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK------TE 241
Query: 400 IGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLF-----ILGCP 454
+ L + L ++ + +CPN LP LK L ++ + +
Sbjct: 242 DLKWDNLKD------------LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 455 KLSSLSEDMHHVTTLKSLTI 474
+L + + + + I
Sbjct: 290 QLKDDWQALADAPVGEKIQI 309
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 9e-09
Identities = 30/258 (11%), Positives = 76/258 (29%), Gaps = 35/258 (13%)
Query: 214 KISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYC 273
+ VE+ + K + L +L + +E G+ + L+L+ N
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ----------- 364
Query: 274 LELEELPKDI-RHLTSLRAFALTTKQ-KSLQES-GIRSLGSLRCLTISG-------CGDL 323
+ E+P + + + + K + +S+ + + S +
Sbjct: 365 --ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 324 EHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKC--ESLDLNINMEME 380
+ L + + ++++ ++ P S L ++ L + N +
Sbjct: 423 DPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Query: 381 GEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLK 440
N L + + +L +L + L + + +F P
Sbjct: 482 ENFKNT------YLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPL 533
Query: 441 DLEALETLFILGCPKLSS 458
+ L+ I
Sbjct: 534 NSSTLKGFGIRNQRDAQG 551
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 15/151 (9%)
Query: 224 ISKSQFLRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD 282
K + +NLS + I P+++ + ++L GN + ++PK+ L++ ++
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNS----LKDENEN 483
Query: 283 IRHLTSLRAFALTTKQ-KSL-QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLS 340
++ L + L + L + +L L + +S + L+
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFG 542
Query: 341 IVCCPRLI------SLPPAIKYLSSLETLFL 365
I P I SL L +
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 33/212 (15%), Positives = 58/212 (27%), Gaps = 49/212 (23%)
Query: 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSE-----SAIEVCPRKIGNLK 251
L+ GRV + S V I + L VL L + P+ I
Sbjct: 77 LNSNGRVTGLSLE--GFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133
Query: 252 --------------------------HMRYLDLSGNSKIKKLPKSIYCL----------- 274
+ ++ + + K + KS
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
Query: 275 ELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR 334
+ + K + LT LR F + I + + D L+
Sbjct: 194 NITFVSKAVMRLTKLRQFYMG--NSPFVAENICEAWENENSEY--AQQYKTEDLKWDNLK 249
Query: 335 VLRTLSIVCCPRLISLPPAIKYLSSLETLFLY 366
L + + CP L LP +K L ++ + +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 14/172 (8%), Positives = 47/172 (27%), Gaps = 25/172 (14%)
Query: 216 SQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNS-------KIKKLP 268
Q ++ + + + I + + L +R + + + +
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 269 KSIYCLELEELPKDIRHLTSLRAFALT--TKQKSLQESGIRSLGSLRCLTISGCGDLEHL 326
S Y + + +L L + L +++L ++ + ++
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN-RGISG 288
Query: 327 FEEIDQLRVLRTLSIVCCPRLISL------------PPAIKYLSSLETLFLY 366
+ D + L ++ + +++ + L L
Sbjct: 289 EQLKDDWQAL--ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 21/146 (14%)
Query: 230 LRVLNLSE---SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL 286
L L+LS S C + ++YLDLS N + + + L
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-------------GVITMSSNFLGL 100
Query: 287 TSLRAFAL-TTKQKSLQESGI-RSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVC 343
L + K + E + SL +L L IS F I + L L L +
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAG 159
Query: 344 CPRLISLPP-AIKYLSSLETLFLYKC 368
+ P L +L L L +C
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQC 185
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPK-------------SIYCLEL 276
L+ L+LS + + L+ + +LD + +K++ + I
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 277 EELPKDI-RHLTSLRAFALT--TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQ 332
I L+SL + + Q++ L +L L +S C LE L +
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNS 197
Query: 333 LRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFL 365
L L+ L++ SL K L+SL+ L
Sbjct: 198 LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDY 230
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 50/269 (18%), Positives = 83/269 (30%), Gaps = 27/269 (10%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSI--YCLELEEL------- 279
L+VL L S I +L + +LDLS N + L S L+ L
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 280 -----PKDIRHLTSLRAFALTTKQ--KSLQESGIRSLGSLRCLTISGCGDLEHLFEE-ID 331
+LT+L+ + + ++ L SL L I L + + +
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLK 169
Query: 332 QLRVLRTLSIVCCPRLISLPPAI-KYLSSLETLFLY--KCESLDLNINMEMEGEGSNHDR 388
+R + L++ L LSS+ L L + E
Sbjct: 170 SIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228
Query: 389 KNTRPHLRRVVIGEITQLLELPQWLLQGSTD--TLQNLLIIDCPNFMALPRSLK-DLEAL 445
L E+ +LL L + D TL L + + K + +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288
Query: 446 ETLFILGCPKLSSLSEDMHHVTTLKSLTI 474
L I LS + +K +T+
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 35/252 (13%), Positives = 79/252 (31%), Gaps = 21/252 (8%)
Query: 230 LRVLNLSESAIEVCPRK--IGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLT 287
L+ LNL + + NL +++ L + ++ + D LT
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-----------DFAGLT 148
Query: 288 SLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPR 346
SL + ++ Q ++S+ + LT+ L D L +R L +
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
Query: 347 LISLPPAIKYLSSLETLFLYKCESLDL-NINMEMEGEGSNHDRKNTRPHLRRVVIGEITQ 405
+ + L + + + + + + + +
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268
Query: 406 L----LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461
++ L + T T++ L I F L LE ++ + + K+ +
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC 327
Query: 462 DM-HHVTTLKSL 472
H+ +L+ L
Sbjct: 328 SFSQHLKSLEFL 339
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 28/286 (9%)
Query: 107 SHNKNEELEDIGMRYLKEL-------LSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLV 159
+++ L +I L + + + F + + K+ L
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239
Query: 160 AKDEFLVVNSDCQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFST---DDEKIS 216
+ ++ + + S ++S+LG+V T+ +
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299
Query: 217 QSFVESCISKSQFLRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKLPKSIYCLE 275
+ S + ++ + + S + + P +LK + +LDLS N + +
Sbjct: 300 YDL-STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYL------ 351
Query: 276 LEELPKDIRHLTSLRAFALTTKQ-KSLQESG--IRSLGSLRCLTISGCGDLEHLFEEIDQ 332
+ SL+ L+ +S+Q++G + +L +L L IS + +
Sbjct: 352 --KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQW 408
Query: 333 LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINME 378
+R L++ + + I +LE L + ++ +
Sbjct: 409 PEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLP 451
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 46/253 (18%), Positives = 87/253 (34%), Gaps = 56/253 (22%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
L +L LS + I L ++ L+L N ++ +P +L+
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP-----------NGAFVYLSK 137
Query: 289 LRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVCCPR 346
L+ L +S+ + SLR L + L ++ E + L LR L++ C
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-- 195
Query: 347 LISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQL 406
+ P + L L+ L L N HL + G L
Sbjct: 196 NLREIPNLTPLIKLDELDLS-----------------GN--------HLSAIRPGSFQGL 230
Query: 407 LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDM-HH 465
+ L + + S + +I+ + +L++L + L L+ L D+
Sbjct: 231 MHLQKLWMIQS-----QIQVIE-------RNAFDNLQSLVEIN-LAHNNLTLLPHDLFTP 277
Query: 466 VTTLKSLTIGGCP 478
+ L+ + + P
Sbjct: 278 LHHLERIHLHHNP 290
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 8e-07
Identities = 33/280 (11%), Positives = 82/280 (29%), Gaps = 43/280 (15%)
Query: 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPK-SIYCL-ELEELPK 281
+ + L+ + + I + + + L+ N KI L C ++ L
Sbjct: 95 LLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYL-- 149
Query: 282 DIRH--LTSLRAFALTTKQKSLQE-----------SGIRSLGSLRCLTISGCGDLEHLFE 328
D++ + ++ L +L+ G L+ L +S L +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGP 208
Query: 329 EIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLY-----------------KCESL 371
E + +S+ +L+ + A+++ +LE L + +++
Sbjct: 209 EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 372 DLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN 431
++ G+ T H ++ L+ LL
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA--PFADRLIALKRKEHA-LLSGQGSE 324
Query: 432 FMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKS 471
L ++ + L + ++ + + K
Sbjct: 325 TERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKI 363
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 29/281 (10%), Positives = 90/281 (32%), Gaps = 35/281 (12%)
Query: 230 LRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKL-PKSIYCL-ELEELPKDIRH- 285
++ +++S+++ + + +++ LDLSGN + ++ + +LE L ++
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL--NLSSN 68
Query: 286 -LTSLRAFALTTKQKSLQESG-----IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTL 339
L + ++L + + S+ L + + + + + + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN-ISRV--SCSRGQGKKNI 125
Query: 340 SIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398
+ ++ L S ++ L L I+ E + +L+
Sbjct: 126 YLANN-KITMLRDLDEGCRSRVQYLDLKLN-----EIDTVNFAELAASSDTLEHLNLQYN 179
Query: 399 VIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458
I ++ + + L+ L + + + + + + KL
Sbjct: 180 FIYDVKGQVVFAK---------LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVL 228
Query: 459 LSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIP 499
+ + + L+ + G R ++ +
Sbjct: 229 IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVA 268
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 43/260 (16%), Positives = 87/260 (33%), Gaps = 40/260 (15%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
L+ L L+ + I +L + +LDLS N + L S + + L+S
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWF-----------KPLSS 125
Query: 289 LRAFALTTKQ-KSLQESGI-RSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVCCP 345
L L K+L E+ + L L+ L + + + L L L I
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS- 184
Query: 346 RLISLPP-AIKYLSSLETLFLYKCE-------SLDLNINMEMEGEGSNHDRKNTRPHLRR 397
L S P ++K + ++ L L+ + +D+ ++E L
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 398 VVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLS 457
+ + + I + + + L + L L +L
Sbjct: 245 GETNSLIKKFTF-------------RNVKITDESLFQVMKLLNQISGLLELEFSRN-QLK 290
Query: 458 SLSEDM-HHVTTLKSLTIGG 476
S+ + + +T+L+ + +
Sbjct: 291 SVPDGIFDRLTSLQKIWLHT 310
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 17/149 (11%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL--------PK 281
L L L + I + NL ++ L+LS N I + L++L K
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLK 171
Query: 282 DIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLS 340
+ +LT+L +++ + + S + L +L L + + + + L L LS
Sbjct: 172 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ-ISDI-TPLGILTNLDELS 227
Query: 341 IVCCPRLISLPPAIKYLSSLETLFLYKCE 369
+ + + L++L L L +
Sbjct: 228 LNGN--QLKDIGTLASLTNLTDLDLANNQ 254
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 18/158 (11%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL---------P 280
L L+L+ + I + L + L L N +I + L L
Sbjct: 245 LTDLDLANNQISNLA-PLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDI 302
Query: 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLS 340
I +L +L L S S + SL L+ L + + + L + LS
Sbjct: 303 SPISNLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFYNNK-VSDV-SSLANLTNINWLS 359
Query: 341 IVCCPRLISLPPAIKYLSSLETLFLY--KCESLDLNIN 376
IS + L+ + L L + +N
Sbjct: 360 AGHNQ--ISDLTPLANLTRITQLGLNDQAWTNAPVNYK 395
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 33/184 (17%)
Query: 215 ISQSFVESCISKSQF--LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIY 272
+ ++ V +S++ + L I+ + L ++ ++ S N ++ +
Sbjct: 31 LGKTNVTDTVSQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNN-QLTDITPLKN 88
Query: 273 CLELEEL---------PKDIRHLTSLRAFALTTKQ----------KSLQE--------SG 305
+L ++ + +LT+L L Q +L S
Sbjct: 89 LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148
Query: 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFL 365
I +L L L G+ + + L L L I +S + L++LE+L
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIA 206
Query: 366 YKCE 369
+
Sbjct: 207 TNNQ 210
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 24/175 (13%)
Query: 214 KISQSFVESCISKSQFLRVLNLSE---SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKS 270
C+ + LR L+LS + C ++ NL H++ L+LS N + L
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTE 394
Query: 271 I--YCLELEEL------------PKDIRHLTSLRAFALT-TKQKSLQESGIRSLGSLRCL 315
C +LE L ++L L+ L+ + E L +L+ L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 316 TISGC---GDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLY 366
+ G + L L L + C L S+ A L + + L
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLS 508
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 49/256 (19%), Positives = 92/256 (35%), Gaps = 43/256 (16%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
L+ L+L+ + + P + L ++ L LS N K + L + SL
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLC-----------QISASNFPSL 327
Query: 290 RAFALT--TKQKSLQESGIRSLGSLRCLTISGC--GDLEHLFEEIDQLRVLRTLSIVCCP 345
++ TK+ L + +L +LR L +S + ++ L L++L++
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN- 386
Query: 346 RLISLPP-AIKYLSSLETLFLYKCESLDLNI-NMEMEGEGSNHDRKNTRPHLRRVVIGEI 403
+SL A K LE L L + + + N L+ + +
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFT-----RLKVKDAQSPFQNL------HLLKVLNLSH- 434
Query: 404 TQLLELPQWLLQGSTDTLQNLLIID------CPNFMALPRSLKDLEALETLFILGCPKLS 457
+ L + L G L L ++ + SL+ L LE L + C LS
Sbjct: 435 SLLDISSEQLFDG----LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLS 489
Query: 458 SLSEDM-HHVTTLKSL 472
S+ + + + +
Sbjct: 490 SIDQHAFTSLKMMNHV 505
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 20/155 (12%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK------DI 283
LNL+ + I + + L+ G + + K + ++ L D
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 284 RHLTSLRAFALTTKQ-----------KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQ 332
++ L ++ + L+ L ++ L L +
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVG 299
Query: 333 LRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLY 366
L L+ L + + +L + SL L +
Sbjct: 300 LSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIK 333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 28/283 (9%), Positives = 88/283 (31%), Gaps = 39/283 (13%)
Query: 230 LRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKLPKSI--YCLELEELPKDIRH- 285
++ +++S+++ + + +++ LDLSGN + ++ + +LE L ++
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL--NLSSN 68
Query: 286 -LTSLRAFALTTKQKSL-----QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTL 339
L + ++L + S+ L + + + + + + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN-ISRV--SCSRGQGKKNI 125
Query: 340 SIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398
+ ++ L S ++ L L E +N L +
Sbjct: 126 YLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS----------DTLEHL 174
Query: 399 VIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN--FMALPRSLKDLEALETLFILGCPKL 456
+ + ++ ++ L +D + + + + + + KL
Sbjct: 175 NLQY-NFIYDVKGQVV------FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226
Query: 457 SSLSEDMHHVTTLKSLTIGGCPALSERCKRPTGEDWPKIAHIP 499
+ + + L+ + G R ++ +
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVA 268
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 15/117 (12%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
L+ L+LS + + + + + ++ L N L + K +R +L
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-------------LVLIEKALRFSQNL 239
Query: 290 RAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCC 344
F L ++ + L EE + L CC
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 42/187 (22%)
Query: 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHM-------------------RYLDLSGNSKI 264
+ S FL+++++ ++++ P +L+ + + N +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SL 207
Query: 265 KKLPKSIYCLE--------LEELPKDIRHLTSLRAFALT-TKQKSLQESGIRSLGSLRCL 315
KKLP LE LEELP ++++L L K+L + SL L
Sbjct: 208 KKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEAL 262
Query: 316 TISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLS----SLETL--FLYKCE 369
+ L L E L L +S L LPP + YL+ + +L E
Sbjct: 263 NVRDN-YLTDLPELPQSLTFL-DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320
Query: 370 SLDLNIN 376
L+++ N
Sbjct: 321 ELNVSNN 327
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 41/240 (17%)
Query: 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE-------- 275
+ FL + + ++ P +L+ L++ N + LP+ L
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEA---LNVRDN-YLTDLPELPQSLTFLDVSENI 288
Query: 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335
L + +L L A + S SL L +S L L +L
Sbjct: 289 FSGLSELPPNLYYLNA------SSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLER 341
Query: 336 LRTLSIVCCPRLISLPPAIKYLSSLETLF---------LYKCESLDLNINMEMEGEGSNH 386
L I L +P + L L + E L +N ++ E
Sbjct: 342 L----IASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE---- 393
Query: 387 DRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALE 446
+L+++ + L E P + + ++D F + + E
Sbjct: 394 ----LPQNLKQLHVET-NPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 26/157 (16%), Positives = 40/157 (25%), Gaps = 36/157 (22%)
Query: 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
FL+ S + P + N+K + + + P E+ + L
Sbjct: 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN----GEQREMAVSRLRD 67
Query: 289 LRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI 348
L ++ G L L E L L C L
Sbjct: 68 CL------------------DRQAHELELNNLG-LSSLPELPPHLESLV----ASCNSLT 104
Query: 349 SLPPAIKYLSSLETLFLYKC---------ESLDLNIN 376
LP + L SL E L ++ N
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 62/268 (23%)
Query: 230 LRVLNLSESAI-EVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
R LNL E+ I + +L H+ L L N I+++ L S
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIE-----------VGAFNGLAS 124
Query: 289 LRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVCCPR 346
L L + L LR L + +E + +++ L L + +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 347 LISLPP-AIKYLSSLETLFLYKC--------------ESLDLNINMEMEGEGSNHDRKNT 391
L + A + L +L+ L L C E L+++ N
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN--------------- 228
Query: 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFIL 451
H + G L L + + S + +I+ + L +L L L
Sbjct: 229 --HFPEIRPGSFHGLSSLKKLWVMNS-----QVSLIE-------RNAFDGLASLVELN-L 273
Query: 452 GCPKLSSLSEDM-HHVTTLKSLTIGGCP 478
LSSL D+ + L L + P
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNP 301
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 12/153 (7%)
Query: 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL------- 279
S F LN + + Y+ L+ + L Y +++L
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHA 78
Query: 280 --PKDIRHLTSLRAFALT-TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVL 336
I L++L + S + + L SL L IS + + +I+ L +
Sbjct: 79 TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138
Query: 337 RTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369
++ + I+ +K L L++L +
Sbjct: 139 NSIDLSYNGA-ITDIMPLKTLPELKSLNIQFDG 170
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 22/163 (13%)
Query: 214 KISQSFVESCISKSQFLRVLNLSESAIEVCPRK-IGNLKHMRYLDLSGNSKIKKLPKSIY 272
+I Q + + + LS + R + ++ L L +K + S
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSS-- 472
Query: 273 CLELEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGC--------GDL 323
P + L +L L+ ++ + + L L L + +
Sbjct: 473 -------PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Query: 324 EHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFL 365
+ L L L++ +P K L L+ + L
Sbjct: 526 GGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDL 567
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 25/172 (14%)
Query: 217 QSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHM-----RYLDLSGNSKIKKLP--- 268
+ + L+ L+LS S + + L+L+ N KI K+
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDA 400
Query: 269 ----KSIYCLEL------EELPKD-IRHLTSLRAFALT-TKQKSLQESGIRSLGSLRCLT 316
+ L+L +EL R L ++ L+ K L + + SL+ L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 317 ISGC--GDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFL 365
+ +++ LR L L + + ++ ++ L LE L L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDL 511
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 214 KISQSFVESCISKSQFLRVLNLSE---SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKS 270
K Q S + L+ L L ++ P L+++ LDLS N I +
Sbjct: 441 KYLQLTRNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD 498
Query: 271 I--YCLELEELPKDIRH--LTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL 326
+ +LE L D++H L L A ++ L L L + G E
Sbjct: 499 MLEGLEKLEIL--DLQHNNLARLWKHANPGGPIYF----LKGLSHLHILNLESNGFDEIP 552
Query: 327 FEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYK 367
E L L+ + + L +LP SL++L L K
Sbjct: 553 VEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQK 593
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 46/283 (16%), Positives = 87/283 (30%), Gaps = 38/283 (13%)
Query: 217 QSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275
+ + ++ L L++ + I + P L ++ L+L N ++ +L
Sbjct: 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLS------- 89
Query: 276 LEELPKDIRHLTSLRAFALT-TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR 334
K T+L L + ++ + +L L +S G QL
Sbjct: 90 ----DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 335 VLRTLSIVCCPRLISLPP---AIKYLSSLETLFLY----------------KCESLDLNI 375
L+ L + ++ +L I SSL+ L L + L LN
Sbjct: 146 NLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 376 NMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDT-LQNLLIIDCPNFMA 434
+ +R + + +QL G T L L + +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 435 LPRSLKDLEALETLFILGCPKLSSLSEDM-HHVTTLKSLTIGG 476
S L LE F+ + L H + ++ L +
Sbjct: 264 GNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKR 305
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 51/275 (18%), Positives = 91/275 (33%), Gaps = 36/275 (13%)
Query: 217 QSFVESCISKSQFLRVLNLSESAI-EVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275
Q + K + L L+LS + + L++++ L LS N KI+ L
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSE----- 163
Query: 276 LEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGC---GDLEHLFEEID 331
DI +SL+ L++ Q K ++G L L ++ L
Sbjct: 164 ----ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 332 QLRVLRTLSIVCCPRLISLPPAIKY---LSSLETLFLYKCESLDLNINMEMEGEGSNHDR 388
+R LS+ +L + ++L L L N+N+ +
Sbjct: 220 ANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYN-----NLNVVGNDSFAWL-- 271
Query: 389 KNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIID-CPNFMALPRSLKDLEALET 447
P L + + L L G L N+ ++ +F SL L ++
Sbjct: 272 ----PQLEYFFLEY-NNIQHLFSHSLHG----LFNVRYLNLKRSFTKQSISLASLPKIDD 322
Query: 448 LFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSE 482
L L+ + + + +KS G L
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 19/139 (13%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
V + S + P + ++ L+L+ N ++++LP + + L
Sbjct: 6 HEVADCSHLKLTQVPDDL--PTNITVLNLTHN-QLRRLP-----------AANFTRYSQL 51
Query: 290 RAFALTT-KQKSLQESGIRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCPRL 347
+ + L+ + L L+ L + L L ++ L L ++ +
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SI 109
Query: 348 ISLPP-AIKYLSSLETLFL 365
+ +L TL L
Sbjct: 110 QKIKNNPFVKQKNLITLDL 128
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
LR L+LS + + L+ +++LD + +K++ + L L
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTE----------FSAFLSLEKL 426
Query: 290 RAFALT-TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVCCPRL 347
++ T K + L SL L ++G ++ + L L + C +L
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QL 485
Query: 348 ISLPP-AIKYLSSLETLFL 365
+ L L+ L +
Sbjct: 486 EQISWGVFDTLHRLQLLNM 504
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 24/162 (14%)
Query: 214 KISQSFVESCISKSQFLRVLNLSE---SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKS 270
K S SF + + L L+LS S C +R+LDLS N
Sbjct: 339 KGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-------- 387
Query: 271 IYCLELEELPKDIRHLTSLRAFAL--TTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFE 328
+ + L L+ +T ++ + S SL L L IS + + F+
Sbjct: 388 -----AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFD 441
Query: 329 EI-DQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKC 368
I L L TL + + ++L L L KC
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 230 LRVLNLSESAI-EVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
+ ++LS + + + N +++LDLS +I+ + K L
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIE-----------DKAWHGLHH 81
Query: 289 LRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIV-CCP 345
L LT +S L SL L L L I QL L+ L++
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFI 140
Query: 346 RLISLPPAIKYLSSLETLFL 365
LP L++L + L
Sbjct: 141 HSCKLPAYFSNLTNLVHVDL 160
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 52/270 (19%), Positives = 86/270 (31%), Gaps = 62/270 (22%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL---------P 280
LR L L+E I + NL M L+L N + L L L
Sbjct: 112 LRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170
Query: 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLS 340
I +LT L + +L Q S + SL SL T + + + + L +L
Sbjct: 171 TPIANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVN-QITDI-TPVANMTRLNSLK 227
Query: 341 IVCCPRLISLPPAIKYLSSLETLFLY--------------KCESLDLNINMEMEGEGSNH 386
I ++ L P + LS L L + K + L++ N
Sbjct: 228 IGNN-KITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ--------- 276
Query: 387 DRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALE 446
I +I+ L L Q L +L + + + L L
Sbjct: 277 -------------ISDISVLNNLSQ---------LNSLFLNNNQLGNEDMEVIGGLTNLT 314
Query: 447 TLFILGCPKLSSLSEDMHHVTTLKSLTIGG 476
TLF+ ++ + + ++ + S
Sbjct: 315 TLFLSQNH-ITDIRP-LASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 36/162 (22%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
L + I +L L + + L S+
Sbjct: 2 AATLATLPAPINQIF-PDADLAEGIRAVLQKA-SVTDVV-------------TQEELESI 46
Query: 290 RAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI 348
+ ++ S+ GI L +L L ++G + + + L L L I I
Sbjct: 47 TKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDI-SPLSNLVKLTNLYIGTN--KI 100
Query: 349 SLPPAIKYLSSLETLFLYKC--------------ESLDLNIN 376
+ A++ L++L L+L + SL+L N
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 36/196 (18%)
Query: 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDL 258
+V +I S+ + S V S + L L LS S I + LDL
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107
Query: 259 SGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ--KSLQESGIRSLGSLRCLT 316
S NS + + + L+ +++ + SG L SL L
Sbjct: 108 SRNSLSGPVTT----------LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157
Query: 317 ISGC---GDLEHLFEEIDQLRVLRTLS-----------IVCCPRLISL----------PP 352
+S G + D L+ L+ + C L L P
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
Query: 353 AIKYLSSLETLFLYKC 368
+ S+L+ L +
Sbjct: 218 FLGDCSALQHLDISGN 233
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 48/186 (25%)
Query: 222 SCISKSQFLRVLNLS----ESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277
I + + L +L LS I P ++G+ + + +LDL+ N +P +++ +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 278 --------ELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH---- 325
+ I++ + Q L L ++
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC---NITSRVYG 621
Query: 326 --LFEEIDQLRVLRTL-------------SIVCCPRLISL-----------PPAIKYLSS 359
D + L I P L L P + L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 360 LETLFL 365
L L L
Sbjct: 682 LNILDL 687
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 44/258 (17%), Positives = 94/258 (36%), Gaps = 41/258 (15%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
L L++SE+ I + + +L +++ L++ N + + + L S
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYIS-----------HRAFSGLNS 153
Query: 289 LRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVCCPR 346
L L S+ + L L L + ++ + + +L L+ L I P
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 347 LISLPPAIKYLSSLETLFLYKC--ESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT 404
L ++ P Y +L +L + C ++ + +LR + +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------------VYLRFLNLSY-N 258
Query: 405 QLLELPQWLLQGSTDTLQNL--LIIDCPNFMALPR-SLKDLEALETLFILGCPKLSSLSE 461
+ + +L L L + + + + + L L L + G +L++L E
Sbjct: 259 PISTIEGSMLHE----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313
Query: 462 DM-HHVTTLKSLTIGGCP 478
+ H V L++L + P
Sbjct: 314 SVFHSVGNLETLILDSNP 331
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 21/143 (14%)
Query: 230 LRVLNLSE---SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL 286
L L+LS S C + ++YLDLS N + + + L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------------VITMSSNFLGL 395
Query: 287 TSLRAFALT-TKQKSLQESGI-RSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVC 343
L + K + E + SL +L L IS F + L L L +
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAG 454
Query: 344 CPRLISLPP-AIKYLSSLETLFL 365
+ P L +L L L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDL 477
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 222 SCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK 281
+ L+ L+LS + + L+ + +LD ++ + S+
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---------- 416
Query: 282 DIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTL 339
L +L ++ + L SL L ++G E+ +I +LR L L
Sbjct: 417 -FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 340 SIVCCPRLISLPP-AIKYLSSLETLFL 365
+ C +L L P A LSSL+ L +
Sbjct: 476 DLSQC-QLEQLSPTAFNSLSSLQVLNM 501
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Query: 230 LRVLNLSE---SAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE-LEELPKDIRH 285
L L+LS S C + ++YLDLS N + + + LE LE L D +H
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL--DFQH 405
Query: 286 --LTSLRAFALTTKQKSLQE-------------SGIRSLGSLRCLTISGCGDLEHLFEEI 330
L + F++ ++L L SL L ++G E+ +I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 331 -DQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLY 366
+LR L L + C +L L P A LSSL+ L +
Sbjct: 466 FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMA 502
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL------------- 276
L+ L+LS + + L+ + +LD + +K++ + L L
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 277 EELPKDI-RHLTSLRAFALTT--KQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQ 332
I L+SL + Q++ L +L L +S C LE L +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNS 492
Query: 333 LRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLY 366
L L+ L++ +L S+P L+SL+ ++L+
Sbjct: 493 LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 21/144 (14%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
L L LS + + + + ++RYLDLS N + L L +
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLD-----------EFLFSDLQA 113
Query: 289 LRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHL----FEEIDQLRVLRTLSIVC 343
L L + + + L+ L +S + ++ ++L L L +
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 344 CPRLISLPP-AIKYLSSLETLFLY 366
+L LP ++ L + LY
Sbjct: 173 N-KLKKLPLTDLQKLPAWVKNGLY 195
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 34/159 (21%)
Query: 215 ISQSFVESCISKSQF--LRVLNLSESAIEVCPRKIGNLKHM---RYLDLSGNSKIKKLPK 269
+ + V +++++ + + + S I+ + ++++ L L+GN K+ +
Sbjct: 28 LKKKSVTDAVTQNELNSIDQIIANNSDIK----SVQGIQYLPNVTKLFLNGN-KLTDI-- 80
Query: 270 SIYCLELEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCG--DLEHL 326
K + +L +L L + K L S ++ L L+ L++ G D+ L
Sbjct: 81 -----------KPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDINGL 127
Query: 327 FEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFL 365
L L +L + I+ + L+ L+TL L
Sbjct: 128 ----VHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSL 160
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 43/259 (16%)
Query: 228 QFLRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDI-RH 285
+ L+VLNL+ + I + L +++ L+LS N L EL
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-------------LGELYSSNFYG 336
Query: 286 LTSLRAFALT-TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCC 344
L + L +Q+ + L L+ L + I + + + +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-----ALTTIHFIPSIPDIFLSGN 391
Query: 345 PRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT 404
L +L + L + L+ N +E + PHL+ +++ +
Sbjct: 392 K-----------LVTLPKINLTA-NLIHLSEN-RLENLDILYFLLRV-PHLQILILNQ-N 436
Query: 405 QLLELPQWLLQGSTDTLQNL-----LIIDCPNFMALPRSLKDLEALETLFILGCPKLSSL 459
+ +L+ L ++ + L L+ L++ L+SL
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL 495
Query: 460 SEDM-HHVTTLKSLTIGGC 477
+ H+T L+ L++
Sbjct: 496 PPGVFSHLTALRGLSLNSN 514
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 52/291 (17%), Positives = 75/291 (25%), Gaps = 71/291 (24%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLP-------KSIYCL--ELEELP 280
L L+ S+I I L + L + N I L + C +L L
Sbjct: 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLDLSQNTNLTYLACDSNKLTNLD 101
Query: 281 KDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRC-------LTISGCGDLEHL------ 326
+ LT L T + L S L L C + +S L L
Sbjct: 102 --VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159
Query: 327 ---FEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC--ESLDLNINMEMEG 381
++ L TL ++ L + L L LDLN N
Sbjct: 160 KITKLDVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKLDLNQN----- 211
Query: 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN--FMALPRS- 438
L + +L E+ L L DC L S
Sbjct: 212 -----------IQLTFLDCSS-NKLTEID-------VTPLTQLTYFDCSVNPLTELDVST 252
Query: 439 ---LKDLEA----LETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSE 482
L L L + + +L +K L + L
Sbjct: 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 23/186 (12%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
L L +S + + + ++ LDLS N L + ++ L
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHN-------------HLLHVERNQPQFDRL 326
Query: 290 RAFALTTKQ-KSLQESGIRSLGSLRCLTISG----CGDLEHLFEEIDQLRVLRTLSIVCC 344
L +L+ S + +L+ LT+S C L LF + + V + C
Sbjct: 327 ENLYLDHNSIVTLKLS---THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD--DADQHC 381
Query: 345 PRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT 404
L + S + + + L +E + + + IT
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441
Query: 405 QLLELP 410
Q +P
Sbjct: 442 QQGGVP 447
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 21/112 (18%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSL 289
L L +S + + + ++ LDLS N L + ++ L
Sbjct: 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHN-------------HLLHVERNQPQFDRL 320
Query: 290 RAFALTTKQ-KSLQESGIRSLGSLRCLTISG----CGDLEHLFEEIDQLRVL 336
L +L+ S + +L+ LT+S C L LF + + V
Sbjct: 321 ENLYLDHNSIVTLKLS---THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 20/156 (12%)
Query: 222 SCISKSQF--LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279
+ + S L N+S + + + + LD S N I + + +EL L
Sbjct: 178 THVDLSLIPSLFHANVSYNLLS----TLAIPIAVEELDASHN-SINVVRGPV-NVELTIL 231
Query: 280 ---------PKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEE 329
+ + L L+ + + + + L L IS L L
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY 290
Query: 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFL 365
+ L+ L + L+ + LE L+L
Sbjct: 291 GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYL 325
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 41/263 (15%), Positives = 89/263 (33%), Gaps = 46/263 (17%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDI-RHLT 287
++ L + +AI P + N+ + L L N L LP+ I +
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-------------LSSLPRGIFHNTP 141
Query: 288 SLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPR 346
L +++ + +++ ++ SL+ L +S L H+ ++ + L ++
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYN-L 197
Query: 347 LISLPPAIK---------YLSSLETLFLYKCESLDLNINM--EMEGEGSNHDRKNTRPHL 395
L +L I ++ + + L L N + + P L
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-------PGL 250
Query: 396 RRVVIGEITQLLELPQWLLQGSTDTLQNL--LIIDCPNFMALPRSLKDLEALETLFILGC 453
V + +L ++ +Q L L I +AL + + L+ L +
Sbjct: 251 VEVDLSY-NELEKIMYHPFVK----MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305
Query: 454 PKLSSLSEDMHHVTTLKSLTIGG 476
L + + L++L +
Sbjct: 306 -HLLHVERNQPQFDRLENLYLDH 327
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 19/154 (12%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSI--YCLELEEL------- 279
L +L L + + L + LDLS N++++ + + L L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 280 ---PKDI-RHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQL 333
+ R L +L+ L ++L + R LG+L L + G + + E L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGL 176
Query: 334 RVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLY 366
L L + R+ + P A + L L TL+L+
Sbjct: 177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLF 209
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL---------P 280
+ +S + +L + L G + + Y L L
Sbjct: 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDL 78
Query: 281 KDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTL 339
+++LT + L+ K++ S I L S++ L ++ + + L L+ L
Sbjct: 79 APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVL 134
Query: 340 SIVCCPRLISLPPAIKYLSSLETLFLYKCE 369
+ ++ ++ P + L++L+ L + +
Sbjct: 135 YLDLN-QITNISP-LAGLTNLQYLSIGNAQ 162
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 34/203 (16%)
Query: 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAI-EVCPRKIGNLKHM 253
L R + I S + +S+ L+ L+L + + + ++
Sbjct: 85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144
Query: 254 RYLDLSGNSKI-----KKLPKSIYCLELEELPKDI----------------RHLTSLRAF 292
L+LSG S + L S C L+EL ++ ++
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSS--CSRLDEL--NLSWCFDFTEKHVQVAVAHVSETITQL 200
Query: 293 ALTTKQKSLQESGIRSLG----SLRCLTISGCGDL-EHLFEEIDQLRVLRTLSIVCCPRL 347
L+ +K+LQ+S + +L +L L +S L F+E QL L+ LS+ C +
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260
Query: 348 --ISLPPAIKYLSSLETLFLYKC 368
+L + + +L+TL ++
Sbjct: 261 IPETL-LELGEIPTLKTLQVFGI 282
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 38/228 (16%)
Query: 264 IKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGS----LRCLTISG 319
+ + + C H + R + ++ S + + S L+ L++ G
Sbjct: 68 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127
Query: 320 CGDLEHLFEEIDQLRVLRTLSIVCCPRL--ISLPPAIKYLSSLETLFLYKCESLDLNINM 377
+ + + + L L++ C +L + S L+ L L C
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT----- 182
Query: 378 EMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPR 437
+ + + ++ + + L + + L+ CPN
Sbjct: 183 ---EKHVQVAVAHVSETITQLNLSGYRKNL----------QKSDLSTLVRRCPN------ 223
Query: 438 SLKDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCPALSERC 484
L L + L + ++ + L+ L++ C +
Sbjct: 224 -------LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS 288
++ +LS+S I + + + + L L+ N +I K+ + + LT
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAF-----------WGLTH 324
Query: 289 LRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEI-DQLRVLRTLSIVCCPR 346
L L+ S+ +L L L +S + L ++ L L+ L++ +
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-Q 382
Query: 347 LISLPP-AIKYLSSLETLFLY 366
L S+P L+SL+ ++L+
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLH 403
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRH-- 285
+ L+LS + + P + L+ + L S N ++ + L+EL + +
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQEL--LLCNNR 519
Query: 286 LTSLRAFALTTKQKSLQESGIRSLGSLRCLTISG 319
L A + S L L + G
Sbjct: 520 LQQSAAI-----------QPLVSCPRLVLLNLQG 542
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 29/149 (19%)
Query: 230 LRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLP-------KSIYCLELEELPK 281
+ L L E+ + P NL ++ + +S + +++L + +E+
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR---- 88
Query: 282 DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL--FEEIDQLRVLRTL 339
+ R+LT + AL L L+ L I G L+ ++ + L
Sbjct: 89 NTRNLTYIDPDALK------------ELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFIL 135
Query: 340 SIVCCPRLISLPP-AIKYLSS-LETLFLY 366
I P + S+P A + L + TL LY
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLY 164
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.92 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.9 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.9 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.9 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.89 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.89 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.89 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.88 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.88 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.87 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.87 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.87 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.87 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.87 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.87 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.87 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.87 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.86 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.86 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.86 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.86 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.85 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.85 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.85 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.85 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.85 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.85 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.85 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.84 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.84 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.84 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.84 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.83 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.83 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.83 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.83 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.82 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.81 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.81 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.81 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.81 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.81 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.81 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.8 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.79 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.79 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.78 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.78 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.78 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.77 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.77 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.77 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.76 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.76 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.75 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.75 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.73 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.73 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.73 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.72 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.72 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.72 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.71 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.71 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.71 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.7 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.7 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.7 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.69 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.69 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.68 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.66 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.64 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.64 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.64 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.63 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.63 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.63 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.62 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.62 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.61 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.61 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.61 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.6 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.59 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.58 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.58 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.57 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.56 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.54 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.53 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.53 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.52 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.51 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.49 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.49 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.48 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.48 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.46 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.45 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.44 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.43 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.43 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.42 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.41 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.39 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.38 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.38 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.37 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.36 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.35 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.31 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.28 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.24 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.19 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.15 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.14 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.14 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.04 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.04 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.01 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.99 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.99 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.88 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.87 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.84 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.75 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.6 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.57 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.57 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.55 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.52 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.49 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.48 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.07 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.98 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.97 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.9 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.88 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.86 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.79 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.67 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.65 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.4 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.26 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.83 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.6 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.46 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 92.34 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.27 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 81.31 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=215.59 Aligned_cols=223 Identities=25% Similarity=0.384 Sum_probs=182.7
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
....+++|+++++.+..+|..++++++|++|++++|. +..+|..++++++|++|++++|.+...|..
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-------------l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-------------LMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-------------CCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-------------ccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 3577888888888888888888888888888888775 567777788888888888888887777777
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCC---------CCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQ---------LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN 376 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~---------l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~ 376 (504)
++++++|++|++++|+....+|..++. +++|++|++++|. ++.+|..++.+++|++|++++|....+.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~-- 222 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALG-- 222 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCC--
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCc--
Confidence 888888888888888888888776654 8888888888874 5588888888888888888887643321
Q ss_pred ccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccC
Q 038400 377 MEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKL 456 (504)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 456 (504)
......++|+.|+++++.....+|.++ ..+++|+.|++++|.....+|..+..+++|++|++++|+.+
T Consensus 223 ----------~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 223 ----------PAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ----------GGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred ----------hhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 112234578888888887777888777 78899999999999999999999999999999999999999
Q ss_pred CcCccCCCCCCCcCeEeEeC
Q 038400 457 SSLSEDMHHVTTLKSLTIGG 476 (504)
Q Consensus 457 ~~l~~~~~~l~~L~~L~l~~ 476 (504)
+.+|..+.++++|+.+++..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCG
T ss_pred hhccHHHhhccCceEEeCCH
Confidence 99999999999999998864
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=236.69 Aligned_cols=322 Identities=16% Similarity=0.162 Sum_probs=206.8
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCC-CeeEEeeecCCcccchHHHHHHhcC--CCcccEEEeCCCCcc-ccCccccCCC
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLG-RVRTIVFSTDDEKISQSFVESCISK--SQFLRVLNLSESAIE-VCPRKIGNLK 251 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~-~lp~~~~~l~ 251 (504)
..++.+.+..+... ..++..+..+. +|++|+++++... ...+ ..+.. ++.|++|++++|.+. .+|..+++++
T Consensus 343 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~--~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 343 RGLKVLDLSFNEFS-GELPESLTNLSASLLTLDLSSNNFS--GPIL-PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCCEEECCSSEEE-ECCCTTHHHHTTTCSEEECCSSEEE--EECC-TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred CCCCEEeCcCCccC-ccccHHHHhhhcCCcEEEccCCCcC--CCcC-hhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 34566666655442 12233344444 5666666544322 0000 11111 445555555555555 4555555555
Q ss_pred CcCeeeccCCCCccccCccee-----------ccccc-cCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeee
Q 038400 252 HMRYLDLSGNSKIKKLPKSIY-----------CLELE-ELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTIS 318 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~-----------~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 318 (504)
+|++|++++|...+.+|..+. .+.+. .+|..+..+++|++|++++|.+. ..+..+.++++|+.|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 555555555543334443332 11233 57888889999999999988876 456678999999999999
Q ss_pred CCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCC----------------
Q 038400 319 GCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGE---------------- 382 (504)
Q Consensus 319 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~---------------- 382 (504)
+|.....+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|......+.......
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 9887778899999999999999999987778999999999999999998864311110000000
Q ss_pred -------------------------------------------CCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCC
Q 038400 383 -------------------------------------------GSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTD 419 (504)
Q Consensus 383 -------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 419 (504)
+..........+|+.|+++++.-...+|..+ +.++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~ 656 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMP 656 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCT
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH--hccc
Confidence 0000011122478999999976556788888 7889
Q ss_pred CccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc--------------------
Q 038400 420 TLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA-------------------- 479 (504)
Q Consensus 420 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~-------------------- 479 (504)
+|+.|+|++|.....+|..++.+++|++|++++|.....+|..+..+++|+.|++++|+-
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 999999999976668999999999999999999976668999999999999999987632
Q ss_pred --------hhhhcCCCCCCCCCCcccCCccccC
Q 038400 480 --------LSERCKRPTGEDWPKIAHIPQVNLD 504 (504)
Q Consensus 480 --------l~~~~~~~~~~~~~~i~~~~~~~~~ 504 (504)
+. .|....+.+|++++|+|.++.|
T Consensus 737 N~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~~~~ 768 (768)
T 3rgz_A 737 NPGLCGYPLP-RCDPSNADGYAHHQRSHHHHHH 768 (768)
T ss_dssp CTEEESTTSC-CCCSCC----------------
T ss_pred CchhcCCCCc-CCCCCccCCCCCCCCccccCCC
Confidence 11 4777889999999999998754
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=207.18 Aligned_cols=287 Identities=14% Similarity=0.133 Sum_probs=195.9
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~ 252 (504)
.+..++++++..+.+. ...+..+.++++|++|+++++... ....+..+.++++|++|++++|.+..+ |..++++++
T Consensus 28 l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccC-cCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 4577899999888773 334667889999999999876542 122344578899999999999999865 778999999
Q ss_pred cCeeeccCCCCccccCcc--e-----------eccccccC-chh-hhccccCCeeeeccccccccc-ccCC---------
Q 038400 253 MRYLDLSGNSKIKKLPKS--I-----------YCLELEEL-PKD-IRHLTSLRAFALTTKQKSLQE-SGIR--------- 307 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~--~-----------~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~-~~~~--------- 307 (504)
|++|++++|...+.+|.. + ..+.+..+ |.. +.++++|++|++++|.+.... ..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999998533222221 1 12334444 433 667777777777766654332 1122
Q ss_pred -------------------------CCCCccEEeeeCCCCcccchhhcCC------------------------------
Q 038400 308 -------------------------SLGSLRCLTISGCGDLEHLFEEIDQ------------------------------ 332 (504)
Q Consensus 308 -------------------------~l~~L~~L~l~~~~~l~~~~~~~~~------------------------------ 332 (504)
.+++|++|++++|......|..+..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 2356666666666443333322211
Q ss_pred ---------CCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccC
Q 038400 333 ---------LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEI 403 (504)
Q Consensus 333 ---------l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 403 (504)
.++|++|++++|......|..++.+++|++|++++|...... .......++|+.|+++++
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-----------DNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSS
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-----------hhHhcCcccCCEEECCCC
Confidence 146677777776555556777888888888888887644321 112234458999999986
Q ss_pred CCcccc-hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCC
Q 038400 404 TQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 404 ~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 478 (504)
. +..+ |..+ ..+++|+.|++++|......|..+..+++|++|++++| .++.+|. .+..+++|+.|++++|+
T Consensus 334 ~-l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 334 F-LGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp C-CCEECGGGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-cCCcChhHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 4 4555 4555 67899999999998544444778999999999999997 5677765 45789999999998765
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=216.50 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=190.6
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCC-cccchHHHHHHhcCC------CcccEEEeCCCCccccCc--
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDD-EKISQSFVESCISKS------QFLRVLNLSESAIEVCPR-- 245 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~lp~-- 245 (504)
...++.+.+..+... ..++..+.++++|++|+++++. .. ....+..+.++ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 356889999988763 3567788899999999999775 33 21344445554 999999999999999999
Q ss_pred cccCCCCcCeeeccCCCCccccCccee-----------ccccccCchhhhcccc-CCeeeecccccccccccCCCCC--C
Q 038400 246 KIGNLKHMRYLDLSGNSKIKKLPKSIY-----------CLELEELPKDIRHLTS-LRAFALTTKQKSLQESGIRSLG--S 311 (504)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~lp~~~~-----------~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~l~--~ 311 (504)
.++++++|++|++++|...+.+| .+. .+.+..+|..+..+++ |++|++++|.+...|..+..++ +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 99999999999999986554888 443 3456678888889998 9999999888777776666654 8
Q ss_pred ccEEeeeCCCCcccchhhcC-------CCCcccEEeeccCCCccccCccC-CCCCCccEEEeccCCCccccccccc----
Q 038400 312 LRCLTISGCGDLEHLFEEID-------QLRVLRTLSIVCCPRLISLPPAI-KYLSSLETLFLYKCESLDLNINMEM---- 379 (504)
Q Consensus 312 L~~L~l~~~~~l~~~~~~~~-------~l~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~---- 379 (504)
|+.|++++|......|..++ .+++|++|++++|. +..+|..+ ..+++|++|++++|....+......
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 88899888877666777777 67788888888875 55666543 3578888888888764432211000
Q ss_pred -------------cCC--CCCCCCCC--CCCccceEEEccCCCcccchhhhhcCCCCCccEEEecc------CCCCCccC
Q 038400 380 -------------EGE--GSNHDRKN--TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIID------CPNFMALP 436 (504)
Q Consensus 380 -------------~~~--~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~ 436 (504)
... ........ ..++|+.|+++++ .+..+|..+ ..+++|+.|++++ +.....+|
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP--LNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG--GGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhh--hcCCCCCEEECCCCcccccCcccccCh
Confidence 000 00000011 2234555555553 233344444 3455555555532 22233455
Q ss_pred cCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 437 RSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 437 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|++|++++|. ++.+|..+. ++|+.|++++|+
T Consensus 560 ~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCT
T ss_pred HHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCC
Confidence 555555555555555553 355555433 556666666554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=200.94 Aligned_cols=230 Identities=14% Similarity=0.186 Sum_probs=121.9
Q ss_pred hcCCCcccEEEeCC-CCcc-ccCccccCCCCcCeeeccCCCCccccCcceeccccc-cCchhhhccccCCeeeecccccc
Q 038400 224 ISKSQFLRVLNLSE-SAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE-ELPKDIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 224 ~~~~~~L~~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~ 300 (504)
+.++++|++|++++ +.+. .+|..++++++|++|++++|. +. .+|..+.++++|++|++++|.+.
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-------------VSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-------------CEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-------------eCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 44444455555442 4433 344444445555555554443 22 33334444445555555444443
Q ss_pred -cccccCCCCCCccEEeeeCCCCcccchhhcCCCC-cccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccc
Q 038400 301 -LQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR-VLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINME 378 (504)
Q Consensus 301 -~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 378 (504)
..+..+.++++|++|++++|.....+|..++.++ +|++|++++|.....+|..+..++ |+.|++++|......
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~---- 213 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA---- 213 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC----
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC----
Confidence 2333444445555555544433334444444444 455555544433334444444443 555555444321110
Q ss_pred ccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCc
Q 038400 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458 (504)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 458 (504)
.......++|+.|+++++. +...+..+ ..+++|++|++++|.....+|..+..+++|++|++++|.....
T Consensus 214 -------~~~~~~l~~L~~L~L~~N~-l~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 214 -------SVLFGSDKNTQKIHLAKNS-LAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp -------GGGCCTTSCCSEEECCSSE-ECCBGGGC--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred -------CHHHhcCCCCCEEECCCCc-eeeecCcc--cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 0111122244455554432 22222223 5678899999988865447888888999999999999865557
Q ss_pred CccCCCCCCCcCeEeEeCCCchhh
Q 038400 459 LSEDMHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 459 l~~~~~~l~~L~~L~l~~c~~l~~ 482 (504)
+|.. ..+++|+.+++.+++.+..
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCC-ccccccChHHhcCCCCccC
Confidence 7765 7888999999999886654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-23 Score=198.47 Aligned_cols=221 Identities=23% Similarity=0.311 Sum_probs=145.0
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.+++.|+++++... . ++..+.++++|++|++++|.+..+|..++++++|++|++++|. +..+|
T Consensus 81 ~~l~~L~L~~n~l~---~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-------------l~~lp 143 (328)
T 4fcg_A 81 PGRVALELRSVPLP---Q-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-------------LRALP 143 (328)
T ss_dssp TTCCEEEEESSCCS---S-CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-------------CCCCC
T ss_pred cceeEEEccCCCch---h-cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-------------cccCc
Confidence 45666666654433 1 1222445666677777766666666666666777777776664 44566
Q ss_pred hhhhccccCCeeeecccc-cccccccCC---------CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcccc
Q 038400 281 KDIRHLTSLRAFALTTKQ-KSLQESGIR---------SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISL 350 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~-~~~~~~~~~---------~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l 350 (504)
..+.++++|++|++++|. ....|..+. ++++|++|++++|. +..+|..++.+++|++|++++|. +..+
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l 221 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSAL 221 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcC
Confidence 666666677777766543 233333333 36677777777653 44666666777777777777664 4456
Q ss_pred CccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 351 PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 351 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
|..++.+++|++|++++|...... .......++|+.|++++|.....+|.++ ..+++|+.|++++|.
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~-----------p~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNY-----------PPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCV 288 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBC-----------CCCTTCCCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCT
T ss_pred chhhccCCCCCEEECcCCcchhhh-----------HHHhcCCCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCC
Confidence 666666777777777766544321 1222234467777777766777777777 678999999999999
Q ss_pred CCCccCcCCCCCCCcceEecccC
Q 038400 431 NFMALPRSLKDLEALETLFILGC 453 (504)
Q Consensus 431 ~l~~l~~~~~~l~~L~~L~l~~c 453 (504)
.+..+|.+++.+++|+.+.+...
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999998764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=202.88 Aligned_cols=286 Identities=18% Similarity=0.182 Sum_probs=182.6
Q ss_pred CCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCC
Q 038400 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLK 251 (504)
Q Consensus 173 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~ 251 (504)
..+..++.+++..+.+. ...+..+..+++|++|+++++... ...+..+.++++|++|+|++|.+..+|. .+.+++
T Consensus 29 ~~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 34567889999888773 233567888999999999877654 2234457889999999999999998886 478999
Q ss_pred CcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhh
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
+|++|++++|. +..+ |..+..+++|++|++++|.+... +..+.++++|++|++++|......+..
T Consensus 105 ~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 105 NLTKLDISENK-------------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp TCCEEECTTSC-------------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCCEEECCCCc-------------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99999999885 3332 34567788888888887776544 346778888888888886543333345
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccc----------cCCCCC-C--CCCCCCCccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEM----------EGEGSN-H--DRKNTRPHLR 396 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~----------~~~~~~-~--~~~~~~~~L~ 396 (504)
++.+++|+.|++.+|......+..+..+++|+.|++++|..+........ .+..-. . ......++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 77788888888887754444444677778888888887765432210000 000000 0 0011223555
Q ss_pred eEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEe
Q 038400 397 RVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIG 475 (504)
Q Consensus 397 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~ 475 (504)
.|+++++. +..++...+ ..+++|+.|++++|......|..+..+++|+.|++++| .++.++. .+..+++|+.|+++
T Consensus 252 ~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 252 FLNLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp EEECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred eeECCCCc-CCccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 55555532 333332211 34566666666665333333556677777777777776 4555554 35667778888777
Q ss_pred CCC
Q 038400 476 GCP 478 (504)
Q Consensus 476 ~c~ 478 (504)
+||
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=216.21 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=107.4
Q ss_pred HHHhcCCCcccEEEeCCCCccc------------------cCcccc--CCCCcCeeeccCCCCccccCccee--------
Q 038400 221 ESCISKSQFLRVLNLSESAIEV------------------CPRKIG--NLKHMRYLDLSGNSKIKKLPKSIY-------- 272 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~-------- 272 (504)
+..+.++++|++|++++|.++. +|..++ ++++|++|++++|...+.+|..+.
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3457778888888888888886 888888 888888888888877777776553
Q ss_pred ---ccc-cc--cCchhhhcc------ccCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccchhhcCCCCcccE
Q 038400 273 ---CLE-LE--ELPKDIRHL------TSLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRT 338 (504)
Q Consensus 273 ---~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 338 (504)
.+. +. .+|..++++ ++|++|++++|.+...|. .++++++|++|++++|.....+| .++.+++|++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 222 44 377777776 788888888877776666 67888888888888765544666 6777777777
Q ss_pred EeeccCCCccccCccCCCCCC-ccEEEeccCCC
Q 038400 339 LSIVCCPRLISLPPAIKYLSS-LETLFLYKCES 370 (504)
Q Consensus 339 L~l~~~~~l~~l~~~l~~l~~-L~~L~l~~~~~ 370 (504)
|++++|. +..+|..+..+++ |++|++++|..
T Consensus 358 L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 358 LNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp EECCSSE-EEECCTTSEEECTTCCEEECCSSCC
T ss_pred EECCCCc-cccccHhhhhhcccCcEEEccCCcC
Confidence 7777764 4466666666666 77777776653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=212.99 Aligned_cols=292 Identities=13% Similarity=0.134 Sum_probs=167.3
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCC-cccchHHHHHHh-------cCCCcccEEEeCCCCccccCc-
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDD-EKISQSFVESCI-------SKSQFLRVLNLSESAIEVCPR- 245 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~lp~- 245 (504)
...++.+.+..+... ..++..+.++++|+.|.++++. .. ....+..+ ..+++|++|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~ls--g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGIS--AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSC--HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcc--cccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 356889999988763 4557788999999999999775 33 21233333 345599999999999999999
Q ss_pred -cccCCCCcCeeeccCCCCccccCccee-----------ccccccCchhhhcccc-CCeeeecccccccccccCCCCCC-
Q 038400 246 -KIGNLKHMRYLDLSGNSKIKKLPKSIY-----------CLELEELPKDIRHLTS-LRAFALTTKQKSLQESGIRSLGS- 311 (504)
Q Consensus 246 -~~~~l~~L~~L~l~~~~~~~~lp~~~~-----------~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~l~~- 311 (504)
.++++++|++|++++|. +..+| .+. .+.+..+|..+..+++ |++|++++|.+...|..+..++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 89999999999999985 44777 332 3445577777777777 88888877776665555555443
Q ss_pred -ccEEeeeCCCCcccch---hhcC--CCCcccEEeeccCCCccccCccCC-CCCCccEEEeccCCCccccccccccCCCC
Q 038400 312 -LRCLTISGCGDLEHLF---EEID--QLRVLRTLSIVCCPRLISLPPAIK-YLSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 312 -L~~L~l~~~~~l~~~~---~~~~--~l~~L~~L~l~~~~~l~~l~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
|+.|++++|.....+| ..++ .+++|+.|++++|. +..+|..+. .+++|+.|++++|..-.++.... ...
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-~~~-- 720 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSL-KPK-- 720 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS-SCT--
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHh-ccc--
Confidence 7777776654433222 1222 22356666666653 345554432 55666666666654322110000 000
Q ss_pred CCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEeccc------CccCCc
Q 038400 385 NHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILG------CPKLSS 458 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~ 458 (504)
.......++|+.|+++++ .+..+|..+....+++|+.|+|++| .++.+|..+..+++|+.|++++ |.....
T Consensus 721 -~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 721 -DGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp -TSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred -cccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 000000114555555553 3444554441124455555555554 2333454455555555555543 222334
Q ss_pred CccCCCCCCCcCeEeEeCCC
Q 038400 459 LSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 459 l~~~~~~l~~L~~L~l~~c~ 478 (504)
+|..+.++++|+.|++++|.
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC
T ss_pred ChHHHhcCCCCCEEECCCCC
Confidence 44444445555555555443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=214.20 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=120.5
Q ss_pred HHHhcCCCcccEEEeCCCCccc------------------cCcccc--CCCCcCeeeccCCCCccccCccee--------
Q 038400 221 ESCISKSQFLRVLNLSESAIEV------------------CPRKIG--NLKHMRYLDLSGNSKIKKLPKSIY-------- 272 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~-------- 272 (504)
+..+.++++|++|+|++|.++. +|..++ ++++|++|++++|...+.+|..+.
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4457888999999999999987 899888 999999999999987888887654
Q ss_pred ---ccc-cc--cCchhhhccc-------cCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccchhhcCCCCccc
Q 038400 273 ---CLE-LE--ELPKDIRHLT-------SLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLR 337 (504)
Q Consensus 273 ---~~~-l~--~lp~~i~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 337 (504)
.+. +. .+|..+++++ +|++|++++|.+...|. .++++++|+.|++++|.. ..+| .++.+++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-hhcCCCcce
Confidence 222 44 3788787776 89999999888877776 788999999999988754 4777 888889999
Q ss_pred EEeeccCCCccccCccCCCCCC-ccEEEeccCCCc
Q 038400 338 TLSIVCCPRLISLPPAIKYLSS-LETLFLYKCESL 371 (504)
Q Consensus 338 ~L~l~~~~~l~~l~~~l~~l~~-L~~L~l~~~~~l 371 (504)
.|++++|. +..+|..+..+++ |+.|++++|..-
T Consensus 599 ~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 599 DLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp EEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred EEECcCCc-cccchHHHhhccccCCEEECcCCCCC
Confidence 99998876 4588888888888 888888888643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=201.29 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=64.0
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC-CCCCCCcC
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED-MHHVTTLK 470 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 470 (504)
.++|+.|+++++.-...+|..+ .++|+.|++++| .++.+|..+..+++|++|++++| .++.+|.. +..+++|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CccCCEEECcCCCCCcchhhhh----cccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 3578888888865434444433 268999999888 56788888889999999999998 67788876 78889999
Q ss_pred eEeEeCCCc
Q 038400 471 SLTIGGCPA 479 (504)
Q Consensus 471 ~L~l~~c~~ 479 (504)
.|++++|+-
T Consensus 472 ~L~l~~N~~ 480 (520)
T 2z7x_B 472 KIWLHTNPW 480 (520)
T ss_dssp EEECCSSCB
T ss_pred EEECcCCCC
Confidence 999998873
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=217.16 Aligned_cols=301 Identities=14% Similarity=0.109 Sum_probs=180.9
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCC-CcC
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLK-HMR 254 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~-~L~ 254 (504)
.++.+.+..+.+ ....+..+..+++|++|.++++... .......+.++++|++|++++|.+. .+|..+.++. +|+
T Consensus 295 ~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 295 TLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCSEEECCSSEE-EECCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred cCCEEECcCCcC-CCccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 344555544433 1223445556666666666654421 1223334666777777777777666 5666666665 666
Q ss_pred eeeccCCCCccccCccee-------------ccccc-cCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeC
Q 038400 255 YLDLSGNSKIKKLPKSIY-------------CLELE-ELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISG 319 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~-------------~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 319 (504)
+|++++|...+.+|..+. .+.+. .+|..+.++++|++|++++|.+. ..+..++++++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 666666544333443321 11111 45666777777777777776654 3445566677777777776
Q ss_pred CCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccc----------cccCCC---CCC
Q 038400 320 CGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINM----------EMEGEG---SNH 386 (504)
Q Consensus 320 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~----------~~~~~~---~~~ 386 (504)
|.....+|..++.+++|++|++++|.....+|..++.+++|+.|++++|......+.. ...... ...
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 6655566666666666666666666555556666666666666666666533211100 000000 001
Q ss_pred CCCCCCCccceEEEccCCCcccchhhhhc---------------------------------------------------
Q 038400 387 DRKNTRPHLRRVVIGEITQLLELPQWLLQ--------------------------------------------------- 415 (504)
Q Consensus 387 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--------------------------------------------------- 415 (504)
......++|+.|+++++.-...+|.++..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 11122347888888876443344433211
Q ss_pred -----------------CCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 416 -----------------GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 416 -----------------~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 124678889998886666889899999999999999987667899999999999999999986
Q ss_pred ch
Q 038400 479 AL 480 (504)
Q Consensus 479 ~l 480 (504)
--
T Consensus 692 l~ 693 (768)
T 3rgz_A 692 LD 693 (768)
T ss_dssp CE
T ss_pred cc
Confidence 43
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=194.78 Aligned_cols=265 Identities=17% Similarity=0.197 Sum_probs=150.9
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcC
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMR 254 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~ 254 (504)
..++.+++..+.+. .-....+..+++|++|.++++... ...+..+..+++|++|++++|.+..+| ..++.+++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 45677888776552 122344677888888888876644 222335778888899999888888665 4578888899
Q ss_pred eeeccCCCCccccCcceeccccccCchhh-hccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccchhhcCC
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEELPKDI-RHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEIDQ 332 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 332 (504)
+|++++|. +..+|..+ .++++|++|++++|.+...+ ..+.++++|++|++++|.. ..++ ++.
T Consensus 121 ~L~L~~n~-------------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~ 184 (390)
T 3o6n_A 121 VLVLERND-------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSL 184 (390)
T ss_dssp EEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGG
T ss_pred EEECCCCc-------------cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc--ccc
Confidence 99988875 55555553 66777777777776655443 3466777777777776542 2221 223
Q ss_pred CCcccEEeeccCC------------------CccccC--------------------ccCCCCCCccEEEeccCCCcccc
Q 038400 333 LRVLRTLSIVCCP------------------RLISLP--------------------PAIKYLSSLETLFLYKCESLDLN 374 (504)
Q Consensus 333 l~~L~~L~l~~~~------------------~l~~l~--------------------~~l~~l~~L~~L~l~~~~~l~~~ 374 (504)
+++|+.|++++|. .+..+| ..+..+++|++|++++|......
T Consensus 185 l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC
Confidence 3333333333321 112222 12333444444444444322110
Q ss_pred ccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 375 INMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
.......++|+.|+++++ .+..+|... ..+++|+.|++++| .++.+|..+..+++|++|++++|.
T Consensus 265 -----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 265 -----------YHPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp -----------SGGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred -----------hhHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 111122335666666653 344444443 45566666666665 345555555566666666666653
Q ss_pred cCCcCccCCCCCCCcCeEeEeCCC
Q 038400 455 KLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 455 ~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
++.++ +..+++|+.|++++|+
T Consensus 330 -i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 -IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cceeC--chhhccCCEEEcCCCC
Confidence 44443 4566677777776665
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=187.84 Aligned_cols=257 Identities=19% Similarity=0.252 Sum_probs=143.2
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+.++.+.. ++. +..+++|++|.++++..... ..+..+++|++|++++|.+..+|. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 456777777665532 222 66777777777776654421 136677778888887777776665 777777777
Q ss_pred eeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 335 (504)
|++++|.....+ ..+..+++|++|++++|.....+. +..+++|++|++++|. +..++. +..+++
T Consensus 137 L~l~~n~~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 200 (347)
T 4fmz_A 137 LNLGANHNLSDL-------------SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTS 200 (347)
T ss_dssp EECTTCTTCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTT
T ss_pred EECCCCCCcccc-------------cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCc
Confidence 777777533322 225566666666666665544433 5566666666666653 333333 555666
Q ss_pred ccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhc
Q 038400 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ 415 (504)
Q Consensus 336 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 415 (504)
|+.|++++|. +..++. +..+++|++|++++|...... .....++|+.|+++++ .+..++ .+
T Consensus 201 L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n-~l~~~~-~~-- 261 (347)
T 4fmz_A 201 LHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLS-------------PLANLSQLTWLEIGTN-QISDIN-AV-- 261 (347)
T ss_dssp CCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-------------GGTTCTTCCEEECCSS-CCCCCG-GG--
T ss_pred cceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCc-------------chhcCCCCCEEECCCC-ccCCCh-hH--
Confidence 6666666653 333333 455566666666665432211 0122335566666554 333332 22
Q ss_pred CCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 416 GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 416 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++| .++.++ .+..+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus 262 ~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 262 KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 34556666666555 344443 24555566666666654333334444555666666666554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-21 Score=198.34 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccc---cCccCCCCCCccEEEeccCCCccccccccccCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLIS---LPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
.+++|++|++++|.....+|..++.+++|++|++++|. ++. +|..++.+++|+.|++++|......
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------- 419 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHA---------- 419 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCC----------
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCcc----------
Confidence 33444444444443333334444444444444444442 222 2233444445555555444322100
Q ss_pred CCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC-C
Q 038400 385 NHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED-M 463 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~ 463 (504)
........++|+.|+++++.-...+|..+ .++|+.|++++| .++.+|..+..+++|++|++++| .++.+|.. +
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 493 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCL----PPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVF 493 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSC----CTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTST
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhh----cCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHH
Confidence 01112233588888888865333333322 168999999988 67889988889999999999998 67788887 8
Q ss_pred CCCCCcCeEeEeCCC
Q 038400 464 HHVTTLKSLTIGGCP 478 (504)
Q Consensus 464 ~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++||
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 494 DRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCTTCCCEECCSCC
T ss_pred hcCCCCCEEEecCCC
Confidence 899999999999887
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=202.46 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=133.8
Q ss_pred CCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCC
Q 038400 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLK 251 (504)
Q Consensus 173 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~ 251 (504)
..+..++++++..+.+. ...+..+.++++|++|+++++... ...+..|.++++|++|++++|.+..+ |..+++++
T Consensus 30 ~l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TSCTTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCCcCcEEEccCCccC-cCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 35668899999888773 334567889999999999977654 23345688999999999999999855 67899999
Q ss_pred CcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhh
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
+|++|++++|. +..+ |..++++++|++|++++|.+... .+.+..+++|++|++++|......+..
T Consensus 106 ~L~~L~L~~n~-------------i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 106 ALKHLFFIQTG-------------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TCCEEECTTSC-------------CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccEeeccccC-------------cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 99999999885 4554 44577888999999998887663 345566899999999887655555677
Q ss_pred cCCCCccc--EEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 330 IDQLRVLR--TLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 330 ~~~l~~L~--~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
++.+++|+ .|++++|. +..+++......+|+.|++++|.
T Consensus 173 ~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp HHTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCS
T ss_pred hhhhcccceeEEecCCCc-cCccChhHhhhccccccccCCch
Confidence 88888888 78888875 34343333344566777666654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=199.20 Aligned_cols=259 Identities=19% Similarity=0.200 Sum_probs=182.1
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCc
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHM 253 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L 253 (504)
...++.+.+..+.+. ...+..+.++++|++|+++++... ......+.++++|++|++++|.+..+ |..+..+++|
T Consensus 55 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 55 FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC---SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCC---ccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 346777777776552 233556777888888888766544 22233466778888888888887754 4567788888
Q ss_pred CeeeccCCCCcccc-Cccee-----------ccccccCch-hhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeC
Q 038400 254 RYLDLSGNSKIKKL-PKSIY-----------CLELEELPK-DIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISG 319 (504)
Q Consensus 254 ~~L~l~~~~~~~~l-p~~~~-----------~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 319 (504)
++|++++|. +..+ |..+. .+.+..+|. .+..+++|+.|++++|.+...+ ..+..+++|+.|++++
T Consensus 131 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 131 KSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 888888774 3322 22221 234555554 4677888888888877765543 3678888888888888
Q ss_pred CCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceE
Q 038400 320 CGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398 (504)
Q Consensus 320 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 398 (504)
|..+..+|.......+|++|++++|. ++.+| ..+..+++|+.|++++|...... .......++|+.|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L 277 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE-----------GSMLHELLRLQEI 277 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEEC-----------TTSCTTCTTCCEE
T ss_pred CccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccC-----------hhhccccccCCEE
Confidence 88888887777777788888888874 55666 35778889999999888643322 1223345589999
Q ss_pred EEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccCc-CCCCCCCcceEecccCc
Q 038400 399 VIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKDLEALETLFILGCP 454 (504)
Q Consensus 399 ~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 454 (504)
+++++. +..+ |..+ ..+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 278 ~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 278 QLVGGQ-LAVVEPYAF--RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSSC-CSEECTTTB--TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCCc-cceECHHHh--cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 999864 4444 4555 67899999999998 5666665 56889999999999885
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=200.67 Aligned_cols=263 Identities=15% Similarity=0.062 Sum_probs=201.7
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcc------
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKS------ 270 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~------ 270 (504)
+..+++|+.|.+.++...... .+..+++|++|++++|.+..+| .+ .+++|++|++++|..+..++..
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred cccCCCCCEEEecCccchhhh-----hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCC
Confidence 677788888888876654211 4667788888888888888777 44 7888888888887555443211
Q ss_pred ---eeccccccC---chhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeecc
Q 038400 271 ---IYCLELEEL---PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVC 343 (504)
Q Consensus 271 ---~~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 343 (504)
+..+.+..+ |..+..+++|++|++++|.....+..+..+++|+.|++++|......| ..++.+++|++|++++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 012233333 778889999999999999888777889999999999999976555555 5788999999999999
Q ss_pred CCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccE
Q 038400 344 CPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQN 423 (504)
Q Consensus 344 ~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 423 (504)
|......|..++.+++|++|++++|...... ........++|+.|+++++.-....|.++ ..+++|+.
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~ 501 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----------LSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQL 501 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcc----------hHHhhccCCCCCEEECCCCcCCccChhhh--cccccCCE
Confidence 9866677888999999999999998643211 02223344689999999975444445556 67899999
Q ss_pred EEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCC-CcCeEeEeCCCc
Q 038400 424 LLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVT-TLKSLTIGGCPA 479 (504)
Q Consensus 424 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~~ 479 (504)
|++++|......|..+..+++|++|++++| .++.+|..+..++ +|+.|++++||-
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 999999655555888999999999999998 5889998888887 699999998763
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=191.93 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=163.4
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
.+.+++.+.+.++... .+....+..+++|++|++++|.+..++ ..+..+++|++|++++|. +.
T Consensus 43 ~l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-------------IR 106 (390)
T ss_dssp GGCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CC
T ss_pred ccCCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-------------CC
Confidence 4688999999977654 333455778999999999999999776 489999999999999986 55
Q ss_pred cCc-hhhhccccCCeeeeccccccccccc-CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCC
Q 038400 278 ELP-KDIRHLTSLRAFALTTKQKSLQESG-IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK 355 (504)
Q Consensus 278 ~lp-~~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~ 355 (504)
.+| ..+.++++|++|++++|.+...+.. +.++++|++|++++|......+..++.+++|++|++++|. ++.++ ++
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~ 183 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LS 183 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GG
T ss_pred cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cc
Confidence 554 4478999999999999998877765 5899999999999986555556679999999999999985 44443 34
Q ss_pred CCCCccEEEeccCCCcccccc-----ccccCCCCC----------------------CCCCCCCCccceEEEccCCCccc
Q 038400 356 YLSSLETLFLYKCESLDLNIN-----MEMEGEGSN----------------------HDRKNTRPHLRRVVIGEITQLLE 408 (504)
Q Consensus 356 ~l~~L~~L~l~~~~~l~~~~~-----~~~~~~~~~----------------------~~~~~~~~~L~~L~l~~~~~l~~ 408 (504)
.+++|+.|++++|..-..... ....+.... .......++|+.|+++++.--..
T Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc
Confidence 566666666666532211100 000000000 00011122444555544321111
Q ss_pred chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 409 LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.|..+ ..+++|+.|++++| .++.+|..+..+++|++|++++| .++.+|..+..+++|+.|++++|+
T Consensus 264 ~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 264 MYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ESGGG--TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ChhHc--cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 23333 34455555555554 34444444455555555555555 344555545555556666665554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=182.17 Aligned_cols=256 Identities=19% Similarity=0.261 Sum_probs=199.8
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+.++.+.. + ..+..+++|++|+++++....... +..+++|++|++++|.++.+| .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~--~-~~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS--I-QGIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCcccc--c-hhhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 356778887766532 2 336778999999998776542221 788999999999999988875 5889999999
Q ss_pred eeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 335 (504)
|++++|. +..+|. +..+++|++|++++|......+.+..+++|++|++++|. +..++. ++.+++
T Consensus 115 L~l~~n~-------------i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~ 178 (347)
T 4fmz_A 115 LYLNEDN-------------ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTD 178 (347)
T ss_dssp EECTTSC-------------CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred EECcCCc-------------ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCC
Confidence 9999886 566665 788999999999988655555668999999999999975 444443 889999
Q ss_pred ccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhc
Q 038400 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ 415 (504)
Q Consensus 336 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 415 (504)
|++|++++|. +..++. +..+++|+.|++++|...... .....++|+.|+++++ .+..++. +
T Consensus 179 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~L~~L~l~~n-~l~~~~~-~-- 239 (347)
T 4fmz_A 179 LYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDIT-------------PVANMTRLNSLKIGNN-KITDLSP-L-- 239 (347)
T ss_dssp CSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-------------GGGGCTTCCEEECCSS-CCCCCGG-G--
T ss_pred CCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCc-------------hhhcCCcCCEEEccCC-ccCCCcc-h--
Confidence 9999999985 566665 778899999999988543321 1233458999999996 4666665 4
Q ss_pred CCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc
Q 038400 416 GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 416 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 479 (504)
..+++|+.|++++| .++.++ .+..+++|++|++++| .++.++ .+..+++|+.|++++|+.
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred hcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcC
Confidence 67899999999998 466664 5889999999999998 677775 477899999999999964
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=202.27 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=143.9
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~ 255 (504)
.++.+.+.++.+. ......+..+++|++|+++++... ...+..+..+++|++|+|++|.+..+|. .++++++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4455666555441 122334566777777777766543 2223346677777888887777776554 4577777888
Q ss_pred eeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhhcCCC
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQL 333 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l 333 (504)
|++++|. +..+|.. ++++++|++|++++|.+...++ .++++++|++|++++|.. ..++ ++.+
T Consensus 128 L~L~~n~-------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l 191 (597)
T 3oja_B 128 LVLERND-------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLI 191 (597)
T ss_dssp EECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGC
T ss_pred EEeeCCC-------------CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhh
Confidence 8877764 4445444 3566666666666665544432 466666666666666432 2221 2223
Q ss_pred CcccEEeeccCC------------------Ccccc--------------------CccCCCCCCccEEEeccCCCccccc
Q 038400 334 RVLRTLSIVCCP------------------RLISL--------------------PPAIKYLSSLETLFLYKCESLDLNI 375 (504)
Q Consensus 334 ~~L~~L~l~~~~------------------~l~~l--------------------~~~l~~l~~L~~L~l~~~~~l~~~~ 375 (504)
++|+.|++++|. .+..+ +..++.+++|+.|++++|......
T Consensus 192 ~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~- 270 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM- 270 (597)
T ss_dssp TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-
T ss_pred hhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-
Confidence 333333333221 01111 123444445555555544322211
Q ss_pred cccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCcc
Q 038400 376 NMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPK 455 (504)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 455 (504)
.......++|+.|+++++ .+..+|... ..+++|+.|+|++| .+..+|..+..+++|+.|++++|.
T Consensus 271 ----------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~- 335 (597)
T 3oja_B 271 ----------YHPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS- 335 (597)
T ss_dssp ----------SGGGTTCSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-
T ss_pred ----------HHHhcCccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-
Confidence 111122346666666663 445555444 45666777777666 345566666666777777777663
Q ss_pred CCcCccCCCCCCCcCeEeEeCCC
Q 038400 456 LSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 456 l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+..+| +..+++|+.|++++|+
T Consensus 336 l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 336 IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcC--hhhcCCCCEEEeeCCC
Confidence 44443 4566777777777766
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=204.39 Aligned_cols=285 Identities=15% Similarity=0.108 Sum_probs=190.9
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~ 252 (504)
.+..++.+.+..+.+. ...+..+.++++|++|+++++.. ...+.+..+.++++|++|+|++|.+..+ |..++++++
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 5678999999998773 33456788999999999997642 2223345688999999999999999865 789999999
Q ss_pred cCeeeccCCCCccccCcceecccccc-Cchh--hhccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCcccch
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEE-LPKD--IRHLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLF 327 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~ 327 (504)
|++|++++|. +.. +|.. +.++++|++|++++|.+...+ ..++++++|++|++++|......+
T Consensus 99 L~~L~Ls~n~-------------l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 99 LFELRLYFCG-------------LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CCCEECTTCC-------------CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cCEeeCcCCC-------------CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9999999986 332 3333 778899999999988876543 468899999999999876655566
Q ss_pred hhcCCC--CcccEEeeccCCCccccCccCCCCCC------ccEEEeccCCCccccccc-------------ccc------
Q 038400 328 EEIDQL--RVLRTLSIVCCPRLISLPPAIKYLSS------LETLFLYKCESLDLNINM-------------EME------ 380 (504)
Q Consensus 328 ~~~~~l--~~L~~L~l~~~~~l~~l~~~l~~l~~------L~~L~l~~~~~l~~~~~~-------------~~~------ 380 (504)
..++.+ ++|+.|++++|......|..++.+++ |+.|++++|......... ...
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 667666 78888888887665556665555554 888888877321100000 000
Q ss_pred --------CCCC------------------------CCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEec
Q 038400 381 --------GEGS------------------------NHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLII 427 (504)
Q Consensus 381 --------~~~~------------------------~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~ 427 (504)
.... ........++|+.|+++++. +..+ |..+ ..+++|+.|+++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~--~~l~~L~~L~Ls 322 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAF--YGLDNLQVLNLS 322 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTT--TTCSSCCEEEEE
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHh--cCCCCCCEEECC
Confidence 0000 00111122356666666542 3332 3333 456777777777
Q ss_pred cCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCC
Q 038400 428 DCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 428 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 478 (504)
+|..-...|..+..+++|+.|++++| .+..++. .+.++++|+.|++++|.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 76433333566777777777777776 4455443 46677788888887764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=186.28 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=111.3
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+++..+.+.. ++ .+..+++|++|+++++..... .+..+++|++|++++|.++.+| ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 356778887776632 23 567888899998887765422 1678888999999998888775 788888999
Q ss_pred eeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 335 (504)
|++++|. +..+| ++.+++|++|++++|.+... .++.+++|++|++++|..+..+ .++.+++
T Consensus 111 L~L~~N~-------------l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 111 LNCDTNK-------------LTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp EECCSSC-------------CSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred EECCCCc-------------CCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 9998875 44444 56677777777777766554 2666777777777776555554 3566677
Q ss_pred ccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 336 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
|++|++++|. ++.+| ++.+++|+.|++++|.
T Consensus 172 L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 172 LTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CCEEECCSSC-CCCCC--CTTCTTCCEEECCSSC
T ss_pred CCEEECCCCc-cceec--cccCCCCCEEECcCCc
Confidence 7777777663 44454 5666666666666654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-21 Score=183.36 Aligned_cols=241 Identities=17% Similarity=0.240 Sum_probs=148.2
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++... ...+..+.++++|++|++++|.++.+ |..++++++|++|++++|. +..+
T Consensus 54 ~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~l 117 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-------------LVEI 117 (332)
T ss_dssp TTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-------------CCSC
T ss_pred CCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-------------CCcc
Confidence 56777777766543 22233466777888888888877755 5677778888888887764 4444
Q ss_pred chhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCc--ccchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDL--EHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|..+. ++|++|++++|.+...++ .+.++++|++|++++|... ...+..++.+ +|++|++++|. ++.+|..+.
T Consensus 118 ~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~- 192 (332)
T 2ft3_A 118 PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP- 192 (332)
T ss_dssp CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC-
T ss_pred Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc-
Confidence 44443 677777777776655543 3667777777777775432 2345555556 77777777764 555665443
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
++|++|++++|...... .......++|+.|+++++ .+..++. ++ ..+++|+.|++++| .++.+
T Consensus 193 -~~L~~L~l~~n~i~~~~-----------~~~l~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 193 -ETLNELHLDHNKIQAIE-----------LEDLLRYSKLYRLGLGHN-QIRMIENGSL--SFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp -SSCSCCBCCSSCCCCCC-----------TTSSTTCTTCSCCBCCSS-CCCCCCTTGG--GGCTTCCEEECCSS-CCCBC
T ss_pred -CCCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCC-cCCcCChhHh--hCCCCCCEEECCCC-cCeec
Confidence 56777777776433221 112223346777777764 3444433 34 45677777777776 45677
Q ss_pred CcCCCCCCCcceEecccCccCCcCccC-CCC------CCCcCeEeEeCCCc
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSED-MHH------VTTLKSLTIGGCPA 479 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~------l~~L~~L~l~~c~~ 479 (504)
|..+..+++|+.|++++| .++.++.. +.. .++|+.|++.+||.
T Consensus 257 p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 777777777777777776 35555432 221 35677777777764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=200.25 Aligned_cols=257 Identities=15% Similarity=0.132 Sum_probs=168.5
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
.+.+++.+.+.++... .+++..+.++++|++|++++|.+..+| ..++.+++|++|++++|. +.
T Consensus 49 ~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~ 112 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-------------IR 112 (597)
T ss_dssp GGCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CC
T ss_pred cCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-------------CC
Confidence 4578899999876544 334556778999999999999999766 489999999999999986 55
Q ss_pred cCch-hhhccccCCeeeeccccccccccc-CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCC
Q 038400 278 ELPK-DIRHLTSLRAFALTTKQKSLQESG-IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK 355 (504)
Q Consensus 278 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~ 355 (504)
.+|. .++.+++|++|++++|.+...++. ++++++|++|++++|......|..++.+++|++|++++|. +..++ ++
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~ 189 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LS 189 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GG
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hh
Confidence 5554 468999999999999998877765 5899999999999987666666789999999999999985 55444 34
Q ss_pred CCCCccEEEeccCCCcccccc-----ccccCCCC----------------------CCCCCCCCCccceEEEccCCCccc
Q 038400 356 YLSSLETLFLYKCESLDLNIN-----MEMEGEGS----------------------NHDRKNTRPHLRRVVIGEITQLLE 408 (504)
Q Consensus 356 ~l~~L~~L~l~~~~~l~~~~~-----~~~~~~~~----------------------~~~~~~~~~~L~~L~l~~~~~l~~ 408 (504)
.+++|+.|++++|..-..... ....+... ........++|+.|+++++.-...
T Consensus 190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE
T ss_pred hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC
Confidence 566666666666532211100 00000000 000011122455555555432222
Q ss_pred chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 409 LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.|..+ ..+++|+.|+|++| .++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 270 ~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 270 MYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp ESGGG--TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CHHHh--cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence 23344 45566666666654 34455555555666666666665 344566555556666666666664
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=185.99 Aligned_cols=226 Identities=16% Similarity=0.127 Sum_probs=184.3
Q ss_pred CcccEEEeCCCCcc---ccCccccCCCCcCeeeccC-CCCccccCcceeccccccCchhhhccccCCeeeecccccc-cc
Q 038400 228 QFLRVLNLSESAIE---VCPRKIGNLKHMRYLDLSG-NSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS-LQ 302 (504)
Q Consensus 228 ~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~-~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~ 302 (504)
.+++.|+++++.+. .+|..++++++|++|++++ |. + ...+|..+.++++|++|++++|.+. ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l-----------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-L-----------VGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-E-----------ESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-c-----------cccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 57899999999987 5899999999999999995 54 1 2357788999999999999999887 66
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCC-CccEEEeccCCCccccccccccC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLS-SLETLFLYKCESLDLNINMEMEG 381 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~ 381 (504)
+..+.++++|++|++++|.....+|..++.+++|++|++++|.....+|..++.++ +|+.|++++|......
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~------- 190 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------- 190 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-------
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-------
Confidence 77799999999999999876668899999999999999999976558999999998 9999999998643211
Q ss_pred CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc
Q 038400 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
........|+.|+++++.-....|..+ ..+++|+.|++++|.....+| .+..+++|++|++++|.....+|.
T Consensus 191 -----~~~~~~l~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 191 -----PPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp -----CGGGGGCCCSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG
T ss_pred -----ChHHhCCcccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCCh
Confidence 111111249999999875444556666 788999999999985433444 488899999999999965558899
Q ss_pred CCCCCCCcCeEeEeCCCch
Q 038400 462 DMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~c~~l 480 (504)
.+..+++|+.|++++|+--
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGGGCTTCCEEECCSSEEE
T ss_pred HHhcCcCCCEEECcCCccc
Confidence 9999999999999999643
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=191.04 Aligned_cols=258 Identities=15% Similarity=0.095 Sum_probs=160.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-cc-CccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
+++++|+++++... ...+..+.++++|++|++++|.+. .+ |..+..+++|++|++++|. +..
T Consensus 30 ~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-------------l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-------------FLQ 93 (455)
T ss_dssp TTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-------------TCE
T ss_pred CccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-------------cCc
Confidence 78999999987654 233456889999999999999986 44 5679999999999999986 333
Q ss_pred C-chhhhccccCCeeeeccccccc-ccc--cCCCCCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCCCccccCcc
Q 038400 279 L-PKDIRHLTSLRAFALTTKQKSL-QES--GIRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCPRLISLPPA 353 (504)
Q Consensus 279 l-p~~i~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~ 353 (504)
+ |..+.++++|++|++++|.+.. .+. .+.++++|++|++++|......|.. ++.+++|++|++++|......+..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 3 5567777888888888777653 222 2777888888888876654444544 677788888888777533333333
Q ss_pred CC----------------------------------CCCCccEEEeccCCCcccccc-------------cccc------
Q 038400 354 IK----------------------------------YLSSLETLFLYKCESLDLNIN-------------MEME------ 380 (504)
Q Consensus 354 l~----------------------------------~l~~L~~L~l~~~~~l~~~~~-------------~~~~------ 380 (504)
+. .+++|++|++++|........ ....
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 32 335677777777743211000 0000
Q ss_pred ------------------------------CCC--C-CCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEe
Q 038400 381 ------------------------------GEG--S-NHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLI 426 (504)
Q Consensus 381 ------------------------------~~~--~-~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l 426 (504)
... . ........++|+.|+++++. +..+ |..+ ..+++|+.|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L 330 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF--WGLTHLLKLNL 330 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEEC
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh--cCcccCCEEEC
Confidence 000 0 00111122356666666543 3332 3344 45667777777
Q ss_pred ccCCCCCcc-CcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 427 IDCPNFMAL-PRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 427 ~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
++|. ++.+ |..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 331 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 331 SQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 7663 3333 4556777777777777764333335667777777777777764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=179.01 Aligned_cols=243 Identities=14% Similarity=0.206 Sum_probs=170.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+.++.|+++++... ...+..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~l 115 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-------------LKEL 115 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------CSBC
T ss_pred CCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-------------CCcc
Confidence 57888888876654 22233477888899999998888866 7788888999999998875 4445
Q ss_pred chhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCc--ccchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDL--EHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|..+. ++|++|++++|.+...+ ..+.++++|+.|++++|... ...+..++.+++|++|++++|. ++.+|..+.
T Consensus 116 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~- 191 (330)
T 1xku_A 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP- 191 (330)
T ss_dssp CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC-
T ss_pred Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc-
Confidence 54443 67888888887766544 34778888888888886542 2455677788888888888874 666776553
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
++|++|++++|..-... .......++|+.|+++++. +..++. ++ ..+++|+.|++++| .++.+
T Consensus 192 -~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~l 255 (330)
T 1xku_A 192 -PSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNS-ISAVDNGSL--ANTPHLRELHLNNN-KLVKV 255 (330)
T ss_dssp -TTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSC-CCEECTTTG--GGSTTCCEEECCSS-CCSSC
T ss_pred -ccCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCCc-CceeChhhc--cCCCCCCEEECCCC-cCccC
Confidence 78888888887543321 1112234578888888753 444433 44 46788999999887 56788
Q ss_pred CcCCCCCCCcceEecccCccCCcCccC-CC------CCCCcCeEeEeCCCch
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSED-MH------HVTTLKSLTIGGCPAL 480 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~c~~l 480 (504)
|.++..+++|++|++++| .++.++.. +. ..++|+.|++.++|.-
T Consensus 256 p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccc
Confidence 888888899999999887 46666542 21 2477888888888743
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=196.40 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=119.6
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~ 255 (504)
.++.+.+..+.+. ......+..+++|+.|+++++.... .+..+..+++|++|++++|.+..+ |..+..+++|++
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE----LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSC----CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccCC----CChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 3444554444331 1122334555556666555444321 112244555566666665555543 345555555555
Q ss_pred eeccCCCCccccCcc-ee-----------ccccccC---chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeC
Q 038400 256 LDLSGNSKIKKLPKS-IY-----------CLELEEL---PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISG 319 (504)
Q Consensus 256 L~l~~~~~~~~lp~~-~~-----------~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~ 319 (504)
|++++|.....+|.. +. .+.+..+ |..+..+++|++|++++|.+... +..+..+++|++|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 555555432233221 00 1111111 22333444444444444332222 22334444444444444
Q ss_pred CCCcccchh-hcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceE
Q 038400 320 CGDLEHLFE-EIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398 (504)
Q Consensus 320 ~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 398 (504)
|......+. .++.+++|+.|++++|......|..++.+++|++|++++|....... .........++|+.|
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI--------QKTNSLQTLGRLEIL 481 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE--------CSSCGGGGCTTCCEE
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc--------ccchhhccCCCccEE
Confidence 332222221 13444444444444443322333334444444444444443211000 000111122355555
Q ss_pred EEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 399 VIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 399 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+++++.-....|..+ ..+++|+.|++++|......|..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 482 ~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAF--TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ECCCCccCccChhhh--ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 555542222223333 445555555555554333344455555555 55555553332233334455566666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=178.03 Aligned_cols=203 Identities=23% Similarity=0.220 Sum_probs=106.2
Q ss_pred hcCCCcccEEEeCCCCcccc---CccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVC---PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 300 (504)
+.++++|++|++++|.+... |..+..+++|++|++++|. +..+|..+..+++|++|++++|.+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------------i~~l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------------VITMSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-------------EEEEEEEEETCTTCCEEECTTSEEE
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-------------cccChhhcCCCCCCCEEECCCCccc
Confidence 44455555555555544422 3334444555555555443 3333334444555555555544443
Q ss_pred ccc--ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc-ccCccCCCCCCccEEEeccCCCccccccc
Q 038400 301 LQE--SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI-SLPPAIKYLSSLETLFLYKCESLDLNINM 377 (504)
Q Consensus 301 ~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~~~~~ 377 (504)
..+ ..+..+++|++|++++|......+..++.+++|++|++++|.... .+|..+..+++|++|++++|.
T Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-------- 186 (306)
T 2z66_A 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-------- 186 (306)
T ss_dssp SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--------
T ss_pred ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC--------
Confidence 332 234445555555555544333333444445555555555443222 244444445555555554442
Q ss_pred cccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCcc
Q 038400 378 EMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPK 455 (504)
Q Consensus 378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~ 455 (504)
+..+ |.++ ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|..
T Consensus 187 ----------------------------l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 187 ----------------------------LEQLSPTAF--NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ----------------------------CCEECTTTT--TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ----------------------------cCCcCHHHh--cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCC
Confidence 2333 3344 456778888887774 44443 3567778888888888755
Q ss_pred CCcCccCCCCCC-CcCeEeEeCCC
Q 038400 456 LSSLSEDMHHVT-TLKSLTIGGCP 478 (504)
Q Consensus 456 l~~l~~~~~~l~-~L~~L~l~~c~ 478 (504)
....|..+..++ +|+.|++++|+
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCHHHHHhhhccCCEEEccCCC
Confidence 555566666664 78888887765
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=187.47 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=179.9
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
++|++|+++++... ......+.++++|++|++++|.++.++ ..+.++++|++|++++|. +..+
T Consensus 52 ~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~ 115 (353)
T 2z80_A 52 EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-------------LSNL 115 (353)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CSSC
T ss_pred ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-------------CCcC
Confidence 47888888877654 222335778899999999999888664 568889999999999875 6667
Q ss_pred chh-hhccccCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCccccCccCC
Q 038400 280 PKD-IRHLTSLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRLISLPPAIK 355 (504)
Q Consensus 280 p~~-i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~ 355 (504)
|.. +.++++|++|++++|.+...+. .+.++++|++|++++|..+..+ +..++.+++|++|++++|......|..++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 665 7788999999999888776655 6788999999999988656655 45788889999999998875555578888
Q ss_pred CCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhh-h-hcCCCCCccEEEeccCCC--
Q 038400 356 YLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQW-L-LQGSTDTLQNLLIIDCPN-- 431 (504)
Q Consensus 356 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~~~~L~~L~l~~~~~-- 431 (504)
.+++|++|++++|..-..... .....++|+.|+++++. +..++.. + .....+.++.+++.++..
T Consensus 196 ~l~~L~~L~l~~n~l~~~~~~-----------~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLLEI-----------FVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TCSEEEEEEEECSCSTTHHHH-----------HHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred ccccCCeecCCCCccccchhh-----------hhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccC
Confidence 889999999988864222100 00113478888888753 3332211 1 112356677788777642
Q ss_pred --CCccCcCCCCCCCcceEecccCccCCcCccCC-CCCCCcCeEeEeCCC
Q 038400 432 --FMALPRSLKDLEALETLFILGCPKLSSLSEDM-HHVTTLKSLTIGGCP 478 (504)
Q Consensus 432 --l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 478 (504)
+..+|..+..+++|++|++++| .++.+|..+ ..+++|++|++++|+
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 1235667788899999999988 577888774 788999999998886
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-20 Score=184.51 Aligned_cols=220 Identities=22% Similarity=0.249 Sum_probs=131.2
Q ss_pred CcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
+++++|+|++|.+..+ |..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+...++.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-------------IRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-------------cCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 4556666666666543 3455666666666666553 33322 3345566666666666555444332
Q ss_pred -CCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
+..+++|++|++++|.. ..++ ..+..+++|++|++++|..++.++. .+..+++|++|++++|..-..
T Consensus 142 ~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------- 211 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--------- 211 (452)
T ss_dssp TSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---------
T ss_pred hhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---------
Confidence 55566666666666442 2333 3455666666666666555555544 355566666666666542211
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
......++|+.|+++++. +..+ |..+ ..+++|+.|++++|......+..+..+++|+.|++++| .++.+|.
T Consensus 212 ----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 283 (452)
T 3zyi_A 212 ----PNLTPLVGLEELEMSGNH-FPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283 (452)
T ss_dssp ----CCCTTCTTCCEEECTTSC-CSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ----ccccccccccEEECcCCc-CcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 112223356666666643 3333 4455 67788999999887544444667888899999999888 5666664
Q ss_pred -CCCCCCCcCeEeEeCCC
Q 038400 462 -DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 462 -~~~~l~~L~~L~l~~c~ 478 (504)
.+..+++|+.|++++||
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 45678889999998876
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=180.47 Aligned_cols=267 Identities=15% Similarity=0.161 Sum_probs=198.6
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCc
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHM 253 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 253 (504)
.+..++.+.+..+.+. ...+..+.++++|++|.++++... ...+..+.++++|++|++++|.+..+|..+. ++|
T Consensus 52 ~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 3457888998888763 233456888999999999877654 2234567889999999999999999888776 799
Q ss_pred CeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccc---cccccCCCCCCccEEeeeCCCCcccchhh
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKS---LQESGIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
++|++++|. +..+|.. +..+++|++|++++|.+. ..+..+..+ +|+.|++++|. +..+|..
T Consensus 126 ~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~ 190 (332)
T 2ft3_A 126 VELRIHDNR-------------IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD 190 (332)
T ss_dssp CEEECCSSC-------------CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS
T ss_pred CEEECCCCc-------------cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc
Confidence 999999885 5566543 778999999999988875 345566777 99999999864 5567765
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
+. ++|++|++++|......+..+..+++|++|++++|..-... .......++|+.|+++++ .+..+
T Consensus 191 ~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 191 LP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----------NGSLSFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp SC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------TTGGGGCTTCCEEECCSS-CCCBC
T ss_pred cc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------hhHhhCCCCCCEEECCCC-cCeec
Confidence 54 78999999998644444577889999999999998643321 111223458999999986 67788
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCc-CCCC------CCCcceEecccCccC--CcCccCCCCCCCcCeEeEeCCC
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKD------LEALETLFILGCPKL--SSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~------l~~L~~L~l~~c~~l--~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
|.++ ..+++|+.|+++++. ++.++. .+.. .++|+.|++.+++.. ...|..+..+++|+.+++++|.
T Consensus 257 p~~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGL--PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTG--GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred Chhh--hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8877 678999999999874 565543 2322 477999999998754 3456668889999999998875
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-20 Score=176.05 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=187.2
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL- 279 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l- 279 (504)
+++++.+++...... +. .-.+.|++|++++|.++.++. .++++++|++|++++|. +..+
T Consensus 32 ~l~~l~~~~~~l~~l----p~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~ 92 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV----PK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-------------ISKIS 92 (330)
T ss_dssp ETTEEECTTSCCCSC----CC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------CCCBC
T ss_pred CCeEEEecCCCcccc----Cc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-------------CCeeC
Confidence 567777765543311 11 123689999999999998775 79999999999999886 5555
Q ss_pred chhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc--ccCccCCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYL 357 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l 357 (504)
|..+..+++|++|++++|.+...+..+. ++|++|++++|......+..++.+++|+.|++++|.... ..+..+..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 6778899999999999998887766554 799999999976555555678999999999999986432 556778899
Q ss_pred CCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCcc-
Q 038400 358 SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMAL- 435 (504)
Q Consensus 358 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l- 435 (504)
++|++|++++|..-.+. . ...++|+.|+++++. +..+ +..+ ..+++|+.|++++|. ++.+
T Consensus 171 ~~L~~L~l~~n~l~~l~-------------~-~~~~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~-l~~~~ 232 (330)
T 1xku_A 171 KKLSYIRIADTNITTIP-------------Q-GLPPSLTELHLDGNK-ITKVDAASL--KGLNNLAKLGLSFNS-ISAVD 232 (330)
T ss_dssp TTCCEEECCSSCCCSCC-------------S-SCCTTCSEEECTTSC-CCEECTGGG--TTCTTCCEEECCSSC-CCEEC
T ss_pred CCcCEEECCCCccccCC-------------c-cccccCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCCc-CceeC
Confidence 99999999998644321 1 112689999999964 5544 4556 678999999999985 5544
Q ss_pred CcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+..+..+++|++|++++| .++.+|..+..+++|++|++++|+
T Consensus 233 ~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 457889999999999998 688999999999999999999986
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=190.55 Aligned_cols=280 Identities=15% Similarity=0.099 Sum_probs=165.7
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMR 254 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~ 254 (504)
+..++++++..+.+. ...+..+..+++|++|+++++... ...+..+.++++|++|++++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCccc-ccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 467888888887763 233456788888888888877654 22344577888899999998888888876 788889
Q ss_pred eeeccCCCCccccCcceecccccc--CchhhhccccCCeeeecccccccccccCCCCCCc--cEEeeeCCCC--cccchh
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEE--LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSL--RCLTISGCGD--LEHLFE 328 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--l~~~~~ 328 (504)
+|++++|. +.. +|..++++++|++|++++|.+.. ..+..+++| +.|++++|.. ....|.
T Consensus 94 ~L~L~~N~-------------l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 94 HLDLSFNA-------------FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EEECCSSC-------------CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred EEeccCCc-------------cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccc
Confidence 99988875 433 45677777888888887766544 235556666 7777766544 233333
Q ss_pred hcCC--------------------------CC------------------------------------------------
Q 038400 329 EIDQ--------------------------LR------------------------------------------------ 334 (504)
Q Consensus 329 ~~~~--------------------------l~------------------------------------------------ 334 (504)
.++. ++
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 3322 22
Q ss_pred ---------cccEEeeccCCCccccCccC-----CCCCCccEEEeccCCCccccc-------------cccccCCCCCCC
Q 038400 335 ---------VLRTLSIVCCPRLISLPPAI-----KYLSSLETLFLYKCESLDLNI-------------NMEMEGEGSNHD 387 (504)
Q Consensus 335 ---------~L~~L~l~~~~~l~~l~~~l-----~~l~~L~~L~l~~~~~l~~~~-------------~~~~~~~~~~~~ 387 (504)
+|++|++++|...+.+|..+ +.+++|+.+++++|.. ..+. .....+......
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc
Confidence 44555555543333566666 6666666666666543 2110 000000000000
Q ss_pred C-CCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC--ccCcCCCCCCCcceEecccCccCCcCccC-C
Q 038400 388 R-KNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM--ALPRSLKDLEALETLFILGCPKLSSLSED-M 463 (504)
Q Consensus 388 ~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~ 463 (504)
. ....++|+.|+++++.-...+|.++ ..+++|+.|++++|.... .+|..+..+++|++|++++|.....+|.. +
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred cchhhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 0 1233467777777654333355555 566677777777664222 34455666777777777766433335543 5
Q ss_pred CCCCCcCeEeEeCCC
Q 038400 464 HHVTTLKSLTIGGCP 478 (504)
Q Consensus 464 ~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++|.
T Consensus 396 ~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCCTTCCEEECCSSC
T ss_pred ccCccCCEEECcCCC
Confidence 556666666666664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=182.06 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=112.4
Q ss_pred CcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeecccccccccc-
Q 038400 228 QFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQES- 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~- 304 (504)
.++++|+|++|.+..++ ..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+...+.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-------------IRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-------------CCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-------------CCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 34455555555554333 344555555555555443 22222 234445555555555444443332
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
.+..+++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|++|++++|..-.+
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------- 200 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---------- 200 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----------
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----------
Confidence 344555555555555432222222444555555555555444444433 344455555555555432211
Q ss_pred CCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE- 461 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~- 461 (504)
......++|+.|+++++ .+..+ |..+ ..+++|+.|+++++......+..+..+++|+.|+|++| .++.+|.
T Consensus 201 ---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 201 ---PNLTPLIKLDELDLSGN-HLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp ---CCCTTCSSCCEEECTTS-CCCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT
T ss_pred ---cccCCCcccCEEECCCC-ccCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChh
Confidence 11122234555555553 23333 3334 56677888888777433334556777888888888887 4555554
Q ss_pred CCCCCCCcCeEeEeCCC
Q 038400 462 DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~c~ 478 (504)
.+..+++|+.|++++||
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 35677888888887766
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=193.93 Aligned_cols=283 Identities=15% Similarity=0.045 Sum_probs=186.4
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCc-------------------------------ccchHHHHHHhc
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDE-------------------------------KISQSFVESCIS 225 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------------------~~~~~~~~~~~~ 225 (504)
.++.+.+..+.......+..+..++.++.+.+..... ...... +. +.
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~-~~ 282 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI-VK-FH 282 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG-GS-CG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc-cc-cc
Confidence 6788888887665455566677777777666532110 011111 22 67
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC---------chhhhccccCCeeeecc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL---------PKDIRHLTSLRAFALTT 296 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l---------p~~i~~l~~L~~L~l~~ 296 (504)
.+++|+.|+++++.+..+| .+..+++|++|++++|.. +.+|.. ....++.+ +..+..+++|++|++++
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence 7899999999999999888 889999999999999863 666632 21111111 11344566666666666
Q ss_pred cccccc---cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCcc
Q 038400 297 KQKSLQ---ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 297 ~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~ 372 (504)
|.+... +..+..+++|++|++++|. +..+|..++.+++|+.|++++|......| ..+..+++|++|++++|....
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 655443 3445666666666666654 44455666666777777776664333333 356666777777777665332
Q ss_pred ccccccccCCCCCCCCCCCCCccceEEEccCCCccc-chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecc
Q 038400 373 LNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLE-LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFIL 451 (504)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 451 (504)
.. .......++|+.|+++++.-... +|..+ ..+++|+.|++++|......|..+..+++|++|+++
T Consensus 439 ~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 439 DF-----------DGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CC-----------TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cc-----------hhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 11 12223445899999988643332 45555 678999999999985544557778999999999999
Q ss_pred cCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 452 GCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 452 ~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+|......|..+..+++|+.|++++|.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 985555558888899999999999986
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=175.94 Aligned_cols=229 Identities=18% Similarity=0.197 Sum_probs=176.5
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCc
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHM 253 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 253 (504)
.+..++++.+..+.+. ......+.++++|+.|+++++........ +..+..+++|++|++++|.+..+|..+..+++|
T Consensus 26 ~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 26 IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEE-EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCc-ccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 4568899999888773 22234578999999999998765422111 123446899999999999999999999999999
Q ss_pred CeeeccCCCCccccCcceeccccccCch--hhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcc-cchhh
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPK--DIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLE-HLFEE 329 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~-~~~~~ 329 (504)
++|++++|. +..++. .+..+++|++|++++|.+... +..+.++++|++|++++|.... .+|..
T Consensus 104 ~~L~l~~n~-------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 104 EHLDFQHSN-------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp CEEECTTSE-------------EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred CEEECCCCc-------------ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 999999885 555543 678899999999999887654 4558899999999999976544 47888
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
++.+++|++|++++|......|..+..+++|++|++++|......
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------------------- 215 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------------------------------- 215 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-----------------------------------
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-----------------------------------
Confidence 999999999999998644445778999999999999998532211
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCC-CcceEecccCc
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLE-ALETLFILGCP 454 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~ 454 (504)
+..+ ..+++|+.|++++|......|..+..++ +|++|++++|+
T Consensus 216 ~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 0112 4568888888888865555677778875 89999998875
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-21 Score=186.46 Aligned_cols=249 Identities=14% Similarity=0.070 Sum_probs=182.7
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
..+..+++|+.|+++++... ...+..+..+++|++|++++|.+...+. +..+++|++|++++|.
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~------------ 91 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY------------ 91 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE------------
T ss_pred HHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc------------
Confidence 44556678999999877654 2344567888999999999998886655 8888999999999875
Q ss_pred ccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccC
Q 038400 275 ELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAI 354 (504)
Q Consensus 275 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l 354 (504)
+..+| ..++|++|++++|.+...+. ..+++|++|++++|......+..++.+++|++|++++|......+..+
T Consensus 92 -l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 -VQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp -EEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred -ccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 44433 34788999998888766653 347889999998876554445577888999999999886444344444
Q ss_pred -CCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 355 -KYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 355 -~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
..+++|++|++++|..-... .....++|+.|+++++ .+..+|..+ ..+++|+.|++++| .++
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~-------------~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N-~l~ 227 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNN-KLV 227 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEE-------------CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTS-CCC
T ss_pred hhccCcCCEEECCCCcCcccc-------------cccccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCC-ccc
Confidence 46788999999988643321 1112458888988885 566676665 56788999999887 567
Q ss_pred ccCcCCCCCCCcceEecccCccC-CcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 434 ALPRSLKDLEALETLFILGCPKL-SSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
.+|..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|..++..
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 78888888899999999888654 366666777888888888877766654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=194.15 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=94.7
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCcc-ccCCCCc
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRK-IGNLKHM 253 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L 253 (504)
+..++.+++..+.+. ...+..+.++++|++|+++++... ...+..+.++++|++|++++|.+..+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 457888888887763 233456788889999999877654 22334577888999999999988877654 8889999
Q ss_pred CeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc-ccccc-ccCCCCCCccEEeeeCCCCcccchhhcC
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ-KSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEID 331 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 331 (504)
++|++++|. +..+ ..|..++++++|++|++++|. ....+ ..+.++++|++|++++|......|..++
T Consensus 101 ~~L~Ls~n~-l~~~----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 101 KYLNLMGNP-YQTL----------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CEEECTTCC-CSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred cEEECCCCc-cccc----------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 999998875 2211 123344555555555555544 22222 3455555555555555444333444444
Q ss_pred CCCcccEEeecc
Q 038400 332 QLRVLRTLSIVC 343 (504)
Q Consensus 332 ~l~~L~~L~l~~ 343 (504)
.+++|++|++.+
T Consensus 170 ~l~~L~~L~l~~ 181 (549)
T 2z81_A 170 SIRDIHHLTLHL 181 (549)
T ss_dssp TCSEEEEEEEEC
T ss_pred ccccCceEeccc
Confidence 444444444433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=191.46 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccc--cCccccCCCCc
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEV--CPRKIGNLKHM 253 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--lp~~~~~l~~L 253 (504)
..++.+.+..+.+. ...+..+.++++|++|+++++..... ....+.++++|++|++++|.+.. +|..++++++|
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 76 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCS---TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccC---CCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 45666666665542 22234566677777777765544311 11125677777777777777764 57777777777
Q ss_pred CeeeccCCC
Q 038400 254 RYLDLSGNS 262 (504)
Q Consensus 254 ~~L~l~~~~ 262 (504)
++|++++|.
T Consensus 152 ~~L~l~~n~ 160 (570)
T 2z63_A 152 EHLDLSSNK 160 (570)
T ss_dssp CEEECTTSC
T ss_pred CEEeCcCCc
Confidence 777777663
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-21 Score=198.21 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=117.3
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhh---hh-----hccCCchhHHHhhhhCCChh
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY---LE-----QKESGILPILRLSYYQLPPH 73 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~---~~-----~~~~~i~~~L~~sy~~L~~~ 73 (504)
++||+... ++++++++++||++|+|+||||+++|+.|+.+ . |+. +. .....+..+|++||+.||++
T Consensus 304 ~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~ 377 (549)
T 2a5y_B 304 AYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKMAQLNNKLESRGLVGVECITPYSYKSLAMA 377 (549)
T ss_dssp HTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHH
T ss_pred HHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHHHHhHHHhhcccHHHHHHHHhcccccccHH
Confidence 45776532 47899999999999999999999999999754 2 433 11 13567999999999999999
Q ss_pred hHhhhh-----------hhcccCCCCccChHHHHHHHHHc--cCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccC
Q 038400 74 LKQCVA-----------YCSIFPKDYPFDSFSLVQFWMAH--GLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLG 140 (504)
Q Consensus 74 ~k~~fl-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 140 (504)
+|.||+ |||+||+++.|+ ++.|+|+ ||+.........++++. ++++|++++|++....
T Consensus 378 lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~---- 448 (549)
T 2a5y_B 378 LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKR---- 448 (549)
T ss_dssp HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEEC----
T ss_pred HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecC----
Confidence 999999 999999999998 7899999 99987644566788888 9999999999987653
Q ss_pred CcEeEEEeChhHHHHHHHHhcCce
Q 038400 141 MGMFFFKMHDLMHDLALLVAKDEF 164 (504)
Q Consensus 141 ~~~~~~~mhdl~~~~~~~~~~~~~ 164 (504)
+....|+|||++|++|+.++.+++
T Consensus 449 ~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 449 MPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCceEEEeChHHHHHHHHHHHHHH
Confidence 134689999999999998887654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=191.44 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=121.5
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~ 252 (504)
.+..++++++..+.+. ...+..+.++++|++|+++++... ...+..+.++++|++|++++|.+..+|. .++++++
T Consensus 23 ~~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 4568899999888763 233456888999999999877654 2234567789999999999999998886 5999999
Q ss_pred cCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhhc
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEEI 330 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 330 (504)
|++|++++|. +..+| ..++++++|++|++++|..... +..++++++|++|++++|......+..+
T Consensus 99 L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 99 LTELHLMSNS-------------IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CSEEECCSSC-------------CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CCEEECCCCc-------------cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 9999999885 44444 3567788888888887765543 3456778888888888765433333433
Q ss_pred C--CCCcccEEeeccCCCccccCccCCCCCCccEE
Q 038400 331 D--QLRVLRTLSIVCCPRLISLPPAIKYLSSLETL 363 (504)
Q Consensus 331 ~--~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 363 (504)
+ .+++|++|++++|......|..+..+++|+.|
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 3 45778888887775333334444444333333
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=180.52 Aligned_cols=265 Identities=18% Similarity=0.233 Sum_probs=139.3
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
.++.+++..+.+.. .+. +..+++|+.|.++++...... + +.++++|++|++++|.+..+|. +.++++|++|
T Consensus 69 ~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~---~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 69 NLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT---P--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG---G--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred CCCEEECCCCccCC--chh-hhccccCCEEECCCCccccCh---h--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 44555555544321 122 455555555555544432111 1 4455555555555555555443 5555555665
Q ss_pred eccCCCCccccCcceec---------cccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccch
Q 038400 257 DLSGNSKIKKLPKSIYC---------LELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLF 327 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~~---------~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 327 (504)
++++|. +..+|..-.. ..+..++ .+.++++|++|++++|.....+ .+..+++|++|++++|.... ++
T Consensus 140 ~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~ 215 (466)
T 1o6v_A 140 ELSSNT-ISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISD-IT 215 (466)
T ss_dssp EEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG
T ss_pred ECCCCc-cCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccc-cc
Confidence 555542 2222210000 0111111 1444555555555554443332 24455555555555543222 22
Q ss_pred hhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcc
Q 038400 328 EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLL 407 (504)
Q Consensus 328 ~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 407 (504)
. ++.+++|+.|++++|. ++.++ .+..+++|+.|++++|...... .....++|+.|+++++ .+.
T Consensus 216 ~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n-~l~ 278 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLA-------------PLSGLTKLTELKLGAN-QIS 278 (466)
T ss_dssp G-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG-------------GGTTCTTCSEEECCSS-CCC
T ss_pred c-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccch-------------hhhcCCCCCEEECCCC-ccC
Confidence 1 4455555555555543 33332 3445555666666555422111 1223447888888875 455
Q ss_pred cchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 408 ELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 408 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.++. + ..+++|+.|++++|. ++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|+
T Consensus 279 ~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 279 NISP-L--AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CCGG-G--TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSC
T ss_pred cccc-c--cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCc
Confidence 5554 3 567888888888874 555554 678888888888888 4555544 6688899999998874
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=181.68 Aligned_cols=266 Identities=18% Similarity=0.251 Sum_probs=187.3
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+..+.+.. ... +..+++|++|+++++...... .+.++++|++|++++|.+..+|. +..+++|++
T Consensus 90 ~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 90 TKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160 (466)
T ss_dssp TTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSE
T ss_pred ccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCCEEECCCCccCCChh-hccCCcccE
Confidence 567888888776633 233 788899999999877654222 17788999999999998877653 566666666
Q ss_pred eeccCCCCccccCcc----------eeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 256 LDLSGNSKIKKLPKS----------IYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 256 L~l~~~~~~~~lp~~----------~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
|+++++ +..++.. +..+.+..++ .+..+++|++|++++|.+...++ ++.+++|+.|++++|. +..
T Consensus 161 L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~ 235 (466)
T 1o6v_A 161 LSFGNQ--VTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKD 235 (466)
T ss_dssp EEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCC
T ss_pred eecCCc--ccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-ccc
Confidence 665421 1222110 0122244444 47788999999999888766654 7788999999998865 444
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCC
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQ 405 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 405 (504)
+ ..+..+++|+.|++++|. +..++. +..+++|+.|++++|...... .....++|+.|+++++ .
T Consensus 236 ~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~L~~n-~ 298 (466)
T 1o6v_A 236 I-GTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNIS-------------PLAGLTALTNLELNEN-Q 298 (466)
T ss_dssp C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCG-------------GGTTCTTCSEEECCSS-C
T ss_pred c-hhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCccc-------------cccCCCccCeEEcCCC-c
Confidence 4 367888999999999885 555554 788899999999988543321 1223458899999886 4
Q ss_pred cccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc
Q 038400 406 LLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 406 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 479 (504)
+..++. + ..+++|+.|++++|. +..++. +..+++|+.|++++| .+..++ .+..+++|+.|++++|+.
T Consensus 299 l~~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 299 LEDISP-I--SNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CSCCGG-G--GGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ccCchh-h--cCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 555554 3 567899999999884 555444 678899999999988 566664 577889999999998863
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=167.45 Aligned_cols=198 Identities=23% Similarity=0.316 Sum_probs=114.4
Q ss_pred CcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccc-cccc-c
Q 038400 228 QFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQ-KSLQ-E 303 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~-~~~~-~ 303 (504)
+.|++|+++++.++.+| ..+..+++|++|++++|. +..+ |..+..+++|++|++++|. +... +
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-------------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-------------cceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 45666666666666544 345666666666666553 3333 3345555666666666553 3333 3
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCC
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
..+..+++|++|++++|......+..++.+++|++|++++|. ++.++ ..++.+++|++|++++|.
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~------------- 164 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR------------- 164 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-------------
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCc-------------
Confidence 445556666666666554333334455555666666665553 33333 235555556666555542
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccchhh-hhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc-
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLELPQW-LLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS- 460 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~- 460 (504)
++.++.. + ..+++|+.|++++|......|..+..+++|+.|++++| .++.++
T Consensus 165 -----------------------l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 165 -----------------------ISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp -----------------------CCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred -----------------------ccccCHHHh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCH
Confidence 3333332 3 45677888888877543344677778888888888887 455555
Q ss_pred cCCCCCCCcCeEeEeCCC
Q 038400 461 EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 461 ~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|+.|++++|+
T Consensus 219 ~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHHTTCTTCCEEECCSSC
T ss_pred HHcccCcccCEEeccCCC
Confidence 346778888888888776
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=187.25 Aligned_cols=179 Identities=18% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccccCCeeeecccccccc---cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCc
Q 038400 285 HLTSLRAFALTTKQKSLQ---ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSL 360 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L 360 (504)
.+++|++|++++|.+... +..+..+++|++|++++|. +..++..++.+++|++|++++|......+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 344444555544443322 2334445555555555532 22333335555555555555543222222 234555566
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCc-ccchhhhhcCCCCCccEEEeccCCCCCccCcCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQL-LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL 439 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 439 (504)
++|++++|...... .......++|+.|+++++.-. ..+|.++ ..+++|+.|++++|......|..+
T Consensus 424 ~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 424 IYLDISHTHTRVAF-----------NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp CEEECTTSCCEECC-----------TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT
T ss_pred CEEeCcCCcccccc-----------hhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhh
Confidence 66666555432211 112223457888888776432 2456555 667888888888875433447777
Q ss_pred CCCCCcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCC
Q 038400 440 KDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 440 ~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 478 (504)
..+++|++|++++| .++.+| ..+.++++|+.|++++|+
T Consensus 491 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 88888888888887 455544 446778888888888765
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=179.49 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=193.1
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCcc-ccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRK-IGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~ 252 (504)
.+..++.+.+..+.+. ......+.++++|++|+++++... ...+..+.++++|++|++++|.++.+|.. ++++++
T Consensus 50 ~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 50 LTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp CCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 3457899999888773 223346889999999999977654 22344578899999999999999988876 899999
Q ss_pred cCeeeccCCCCccccCcceeccccccCch--hhhccccCCeeeecccc-cccc-cccCCCCCCccEEeeeCCCCcccchh
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEELPK--DIRHLTSLRAFALTTKQ-KSLQ-ESGIRSLGSLRCLTISGCGDLEHLFE 328 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~lp~--~i~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~ 328 (504)
|++|++++|. +..+|. .+..+++|++|++++|. .... +..+.++++|++|++++|......|.
T Consensus 126 L~~L~L~~n~-------------l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 126 LTFLNLLGNP-------------YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp CSEEECTTCC-------------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCEEECCCCC-------------CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 9999999985 566665 57889999999999873 4433 45789999999999999876666688
Q ss_pred hcCCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCC---
Q 038400 329 EIDQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT--- 404 (504)
Q Consensus 329 ~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 404 (504)
.++.+++|++|++++|. ++.+|.. +..+++|+.|++++|..-..... ..........++.+++.++.
T Consensus 193 ~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFS--------ELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCH
T ss_pred HHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCcccccccc--------ccccccccchhhccccccccccC
Confidence 99999999999999986 5666553 34588999999999864432210 00111122356666666642
Q ss_pred -CcccchhhhhcCCCCCccEEEeccCCCCCccCcCC-CCCCCcceEecccCccCC
Q 038400 405 -QLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL-KDLEALETLFILGCPKLS 457 (504)
Q Consensus 405 -~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~ 457 (504)
.+..+|.++ ..+++|+.|++++| .++.+|..+ ..+++|++|++++|+...
T Consensus 264 ~~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 264 ESLFQVMKLL--NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhHHHH--hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 233467776 67899999999998 577888874 899999999999986433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-19 Score=176.80 Aligned_cols=221 Identities=20% Similarity=0.280 Sum_probs=169.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
++++.|+++++.+.. .....|.++++|++|+|++|.+..++ ..+.++++|++|++++|. +..+
T Consensus 64 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-------------l~~~ 127 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-------------LTTI 127 (440)
T ss_dssp TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-------------CSSC
T ss_pred CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-------------CCee
Confidence 578889988776552 22345788999999999999988665 678889999999999885 5566
Q ss_pred ch-hhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PK-DIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|. .+..+++|++|++++|.+...+. .+.++++|++|++++|+.+..++. .+..+++|++|++++|. ++.+|. +..
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~ 205 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTP 205 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCC
Confidence 54 47788999999999888766543 688899999999999888877765 57889999999999884 677775 788
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccch-hhhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELP-QWLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
+++|+.|++++|...... .......++|+.|++.++ .+..++ ..+ ..+++|+.|+|++| .++.+
T Consensus 206 l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIR-----------PGSFQGLMHLQKLWMIQS-QIQVIERNAF--DNLQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp CSSCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTC-CCCEECTTSS--TTCTTCCEEECTTS-CCCCC
T ss_pred CcccCEEECCCCccCccC-----------hhhhccCccCCEEECCCC-ceeEEChhhh--cCCCCCCEEECCCC-CCCcc
Confidence 999999999998544322 222334458999999885 455443 334 67899999999998 46666
Q ss_pred C-cCCCCCCCcceEecccCc
Q 038400 436 P-RSLKDLEALETLFILGCP 454 (504)
Q Consensus 436 ~-~~~~~l~~L~~L~l~~c~ 454 (504)
| ..+..+++|+.|++++|+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSC
T ss_pred ChhHhccccCCCEEEcCCCC
Confidence 5 446889999999998875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=175.79 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=149.1
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+..+.+..- + +..+++|+.|+++++..... .+.++++|++|++++|.++.+| ++.+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 4677888877766432 2 66788888888887765422 1677888888888888888775 788888888
Q ss_pred eeccCCCCccccCcce---------e-ccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 256 LDLSGNSKIKKLPKSI---------Y-CLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~---------~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
|++++|. ++.+|-.- . +..+..+ .+..+++|++|++++|.+...+ ++.+++|+.|++++|. +..
T Consensus 132 L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~ 205 (457)
T 3bz5_A 132 LNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITK 205 (457)
T ss_dssp EECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSC
T ss_pred EECCCCc-cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCe
Confidence 8888774 33232100 0 0012222 2445555666666655554443 5556666666665543 222
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCC
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQ 405 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 405 (504)
+ .++.+++|+.|++++|. ++.+| ++.+++|+.|++++|..-..... .-...........+|+.|+++++..
T Consensus 206 ~--~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 206 L--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp C--CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred e--ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCCCCEEECCCCcc
Confidence 3 25566666666666653 44454 55666666666666542221100 0000000000011344455555544
Q ss_pred cccchhhhhcCCCCCccEEEeccCCCCCccCc--------CCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCC
Q 038400 406 LLELPQWLLQGSTDTLQNLLIIDCPNFMALPR--------SLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGC 477 (504)
Q Consensus 406 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 477 (504)
+..+|. ..+++|+.|++++|..+..+|. .+..+++|++|++++| .++.++ +.++++|+.|+++++
T Consensus 277 ~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 277 LIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred CCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 444441 3457777777777765554442 1344556666666665 455553 566777777777665
Q ss_pred C
Q 038400 478 P 478 (504)
Q Consensus 478 ~ 478 (504)
.
T Consensus 350 ~ 350 (457)
T 3bz5_A 350 H 350 (457)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=185.08 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=166.5
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++|+.|+++++... ...+..+..+++|++|+|++|.++..++ ++.+++|++|++++|. +..+
T Consensus 33 ~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-------------l~~l 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-------------VQEL 95 (487)
T ss_dssp GGGCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-------------EEEE
T ss_pred CCCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-------------CCCC
Confidence 347888888877654 2233457788888888888888876554 8888888888888874 4444
Q ss_pred chhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCC-CCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK-YLS 358 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~-~l~ 358 (504)
| ..++|++|++++|.+...+. ..+++|+.|++++|......|..++.+++|++|++++|......|..+. .++
T Consensus 96 ~----~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 96 L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp E----ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred C----CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 3 23788888888888776654 3568888888888765555566778888888888888865555566664 688
Q ss_pred CccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC
Q 038400 359 SLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS 438 (504)
Q Consensus 359 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 438 (504)
+|+.|++++|..-... .....++|+.|+++++ .+..+|..+ ..+++|+.|++++| .+..+|..
T Consensus 170 ~L~~L~Ls~N~l~~~~-------------~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp TCCEEECTTSCCCEEE-------------CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTS-CCCEECTT
T ss_pred cccEEecCCCcccccc-------------ccccCCCCCEEECCCC-CCCCCCHhH--cCCCCccEEEecCC-cCcccchh
Confidence 8888888888643221 1113457888888774 466666555 56678888888876 46667777
Q ss_pred CCCCCCcceEecccCccC-CcCccCCCCCCCcCeEeEe
Q 038400 439 LKDLEALETLFILGCPKL-SSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 439 ~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~ 475 (504)
+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777888888888877544 3556666667777766664
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=179.05 Aligned_cols=221 Identities=19% Similarity=0.239 Sum_probs=172.2
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
++++.|+++++.+. ...+..|.++++|++|+|++|.+..++ ..+..+++|++|++++|. +..+
T Consensus 75 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~ 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-------------LTVI 138 (452)
T ss_dssp TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------------CSBC
T ss_pred CCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-------------CCcc
Confidence 57899999877654 223445788999999999999998665 678899999999999885 5556
Q ss_pred chh-hhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKD-IRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|.. +..+++|++|++++|.+...+. .+.++++|+.|++++|+.+..++. .++.+++|++|++++|. +..+|. +..
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~ 216 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTP 216 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccc
Confidence 544 6789999999999888776543 688899999999999888888775 57889999999999985 666764 788
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
+++|+.|++++|...... .......++|+.|+++++. +..+ +..+ ..+++|+.|+|++| .++.+
T Consensus 217 l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIR-----------PGSFHGLSSLKKLWVMNSQ-VSLIERNAF--DGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp CTTCCEEECTTSCCSEEC-----------GGGGTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECCSS-CCSCC
T ss_pred cccccEEECcCCcCcccC-----------cccccCccCCCEEEeCCCc-CceECHHHh--cCCCCCCEEECCCC-cCCcc
Confidence 999999999998654432 1122334589999999864 4444 4445 67899999999998 56666
Q ss_pred C-cCCCCCCCcceEecccCc
Q 038400 436 P-RSLKDLEALETLFILGCP 454 (504)
Q Consensus 436 ~-~~~~~l~~L~~L~l~~c~ 454 (504)
| ..+..+++|+.|++++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 5 456889999999999875
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=171.88 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=183.9
Q ss_pred eeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCch
Q 038400 203 VRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK 281 (504)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~ 281 (504)
++...++... ........+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++.
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~ 75 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------------LYETLD 75 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-------------CEEEEE
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-------------CCcchh
Confidence 4444444332 23445566778889999999999999765 689999999999999986 444443
Q ss_pred hhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCcc
Q 038400 282 DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLE 361 (504)
Q Consensus 282 ~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 361 (504)
+..+++|++|++++|.+...+ ..++|++|++++|. +..++. ..+++|++|++++|......+..++.+++|+
T Consensus 76 -~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 -LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp -ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred -hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 788999999999999876554 34899999999975 444442 3578999999999864444455788899999
Q ss_pred EEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCC
Q 038400 362 TLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKD 441 (504)
Q Consensus 362 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 441 (504)
+|++++|........ ......++|+.|+++++ .++.++... .+++|+.|++++| .++.+|..+..
T Consensus 148 ~L~Ls~N~l~~~~~~----------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~ 212 (317)
T 3o53_A 148 YLDLKLNEIDTVNFA----------ELAASSDTLEHLNLQYN-FIYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQS 212 (317)
T ss_dssp EEECTTSCCCEEEGG----------GGGGGTTTCCEEECTTS-CCCEEECCC---CCTTCCEEECCSS-CCCEECGGGGG
T ss_pred EEECCCCCCCcccHH----------HHhhccCcCCEEECCCC-cCccccccc---ccccCCEEECCCC-cCCcchhhhcc
Confidence 999999865443211 00112358999999986 466665443 4799999999998 57788888999
Q ss_pred CCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCch
Q 038400 442 LEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 480 (504)
+++|+.|++++| .++.+|..+..+++|+.|++++|+-.
T Consensus 213 l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999998 68889999999999999999998754
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=185.14 Aligned_cols=127 Identities=22% Similarity=0.246 Sum_probs=86.3
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMR 254 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~ 254 (504)
+..++.+++..+.+. ...+..+..+++|++|+++++... ...+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 456777777776652 222356677777777777766544 22234466777777777777777777766 677777
Q ss_pred eeeccCCCCccccCcceeccccccC--chhhhccccCCeeeecccccccccccCCCCCCc--cEEeeeCCCC
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEEL--PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSL--RCLTISGCGD 322 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 322 (504)
+|++++|. +..+ |..++++++|++|++++|.+.. ..+..+++| +.|++++|..
T Consensus 125 ~L~Ls~N~-------------l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 125 HLDLSFND-------------FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EEECCSSC-------------CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred EEECCCCC-------------ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 77777764 4443 4678888889999888877654 245556666 8888888755
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-18 Score=175.75 Aligned_cols=274 Identities=17% Similarity=0.170 Sum_probs=190.0
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC---cc-ccCCC
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP---RK-IGNLK 251 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp---~~-~~~l~ 251 (504)
..++.+.+..+.+. ...+..+..+++|+.|.+..+... ......+..+++|++|++++|.+..++ .. ...+.
T Consensus 148 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 148 TSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA---FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp CEEEEEEEEETTCC-EECTTTTTTCSEEEEEEEECSBST---THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred cccCeeeccCCccc-ccChhhhhccccCceEecccCccc---ccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 45777777776653 234556677778888887765533 233344567888888888888877542 11 12233
Q ss_pred CcCeeeccC----------------------------CCCcc--cc------------------------Cc--------
Q 038400 252 HMRYLDLSG----------------------------NSKIK--KL------------------------PK-------- 269 (504)
Q Consensus 252 ~L~~L~l~~----------------------------~~~~~--~l------------------------p~-------- 269 (504)
+|+.|++++ |...+ .+ |.
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 344444333 21100 00 00
Q ss_pred ------------ceeccccccCchhh-hccccCCeeeecccccccc----cccCCCCCCccEEeeeCCCCcccch---hh
Q 038400 270 ------------SIYCLELEELPKDI-RHLTSLRAFALTTKQKSLQ----ESGIRSLGSLRCLTISGCGDLEHLF---EE 329 (504)
Q Consensus 270 ------------~~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~---~~ 329 (504)
.+..+.+..+|..+ ..+++|++|++++|.+... +..++.+++|++|++++|. +..++ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhh
Confidence 01123355677776 4799999999998887653 2347889999999999974 44444 45
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
++.+++|++|++++|. ++.+|..+..+++|++|++++|..-.+. ...+.+|+.|+++++ .++.+
T Consensus 383 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~--------------~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 383 LLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVK--------------TCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp GGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCC--------------TTSCTTCSEEECCSS-CCSCC
T ss_pred hhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCccccc--------------chhcCCceEEECCCC-Chhhh
Confidence 8899999999999984 7789998999999999999998633211 111248999999986 45554
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCC
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 478 (504)
+ ..+++|+.|++++| .++.+|. ...+++|++|++++| .++.++ ..+..+++|+.|++++|+
T Consensus 447 ~-----~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 S-----LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp C-----CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred c-----ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 3 46799999999998 5778887 567999999999998 455554 457899999999999887
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=190.29 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=181.3
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCc-ccc-CccccCCCCcCeeeccCCCCccccCcceecccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAI-EVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL 276 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l 276 (504)
-.+++++|+++++.+. ...+..+.++++|++|++++|.. ..+ |..+.++++|++|++++|. +
T Consensus 22 lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-------------l 85 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-------------I 85 (844)
T ss_dssp SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-------------C
T ss_pred CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-------------C
Confidence 4578999999987754 22344588999999999999954 455 7789999999999999986 4
Q ss_pred ccC-chhhhccccCCeeeeccccccc-ccc--cCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC
Q 038400 277 EEL-PKDIRHLTSLRAFALTTKQKSL-QES--GIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP 351 (504)
Q Consensus 277 ~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~ 351 (504)
..+ |..+.++++|++|++++|.+.. .+. .+.++++|++|++++|......+ ..++++++|++|++++|......+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 444 6678899999999999998765 233 38999999999999986554433 578999999999999987555566
Q ss_pred ccCCCC--CCccEEEeccCCCcccccc----------------ccccCCC---CC---CCCCC-----------------
Q 038400 352 PAIKYL--SSLETLFLYKCESLDLNIN----------------MEMEGEG---SN---HDRKN----------------- 390 (504)
Q Consensus 352 ~~l~~l--~~L~~L~l~~~~~l~~~~~----------------~~~~~~~---~~---~~~~~----------------- 390 (504)
..+..+ ++|+.|++++|........ ....+.. .. .....
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 777766 8999999998864321100 0000000 00 00000
Q ss_pred ------------------CCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEeccc
Q 038400 391 ------------------TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILG 452 (504)
Q Consensus 391 ------------------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 452 (504)
..++|+.|+++++.-....+..+ ..+++|+.|++++|..-...|..+..+++|++|++++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 01356666666543222223333 5567788888877743334456677888888888888
Q ss_pred CccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 453 CPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 453 c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
|..-...|..+..+++|+.|++++|.
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCC
Confidence 74333346677788888888888774
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-19 Score=186.31 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=125.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++... ...+..+.++++|++|++++|.+..+ |..++++++|++|++++|. +..+
T Consensus 25 ~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~l 88 (680)
T 1ziw_A 25 TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-------------LSQL 88 (680)
T ss_dssp TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-------------CCCC
T ss_pred CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-------------cCcc
Confidence 68999999987654 23344588899999999999999865 5678999999999999885 6677
Q ss_pred ch-hhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cC--
Q 038400 280 PK-DIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AI-- 354 (504)
Q Consensus 280 p~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l-- 354 (504)
|. .++++++|++|++++|.+...+ ..++++++|++|++++|......|..++.+++|++|++++|. ++.++. .+
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 76 4889999999999998877665 568999999999999987666667788999999999999986 444443 32
Q ss_pred CCCCCccEEEeccCCCc
Q 038400 355 KYLSSLETLFLYKCESL 371 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~~l 371 (504)
..+++|+.|++++|..-
T Consensus 168 ~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIK 184 (680)
T ss_dssp GTTCEESEEECTTCCCC
T ss_pred cccccccEEECCCCccc
Confidence 35689999999998543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=175.32 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=137.4
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+++|++|++++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|.+...+.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-------------l~~lp~~---l~~L~~L~Ls~N~l~~l~~- 158 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-------------LTSLPVL---PPGLQELSVSDNQLASLPA- 158 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-------------CSCCCCC---CTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-------------CCcCCCC---CCCCCEEECcCCcCCCcCC-
Confidence 34555555555555555544 34455555555543 4455543 3677777877776665543
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
.+++|+.|++++| .+..+| ..+++|+.|++++|. +..+|.. +++|+.|++++|..-.+.
T Consensus 159 --~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~----------- 217 (622)
T 3g06_A 159 --LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLP----------- 217 (622)
T ss_dssp --CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCC-----------
T ss_pred --ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccccC-----------
Confidence 3467777777774 344555 456788888888874 5566653 467888888877533211
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCC
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHH 465 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 465 (504)
...++|+.|+++++ .++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+|..+.+
T Consensus 218 ----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~ 282 (622)
T 3g06_A 218 ----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIH 282 (622)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred ----CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhh
Confidence 12358999999986 677777 34589999999998 6778887 6789999999998 67899999999
Q ss_pred CCCcCeEeEeCCCc
Q 038400 466 VTTLKSLTIGGCPA 479 (504)
Q Consensus 466 l~~L~~L~l~~c~~ 479 (504)
+++|+.|++++|+-
T Consensus 283 l~~L~~L~L~~N~l 296 (622)
T 3g06_A 283 LSSETTVNLEGNPL 296 (622)
T ss_dssp SCTTCEEECCSCCC
T ss_pred ccccCEEEecCCCC
Confidence 99999999999974
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-18 Score=159.38 Aligned_cols=198 Identities=26% Similarity=0.295 Sum_probs=133.2
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+.++++++.++++++.++.+|..+. +++++|++++|. +..+ |..+..+++|++|++++|.+...
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-------------LYTFSLATLMPYTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-------------CSEEEGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-------------CCccCHHHhhcCCCCCEEECCCCccCcc
Confidence 4567788888888888888887664 688888888875 4444 34577888888888888877766
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEG 381 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 381 (504)
+. .+.+++|++|++++| .+..+|..+..+++|++|++++|. ++.+| ..+..+++|++|++++|..-.
T Consensus 71 ~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~--------- 138 (290)
T 1p9a_G 71 QV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT--------- 138 (290)
T ss_dssp EC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC---------
T ss_pred cC-CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc---------
Confidence 54 377888888888885 456777778888888888888875 55554 567888888888888874322
Q ss_pred CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC-CCCCCCcceEecccCccCCcCc
Q 038400 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS-LKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
+|...+ ..+++|+.|+++++ .++.+|.. +..+++|+.|++++| .++.+|
T Consensus 139 ---------------------------~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip 188 (290)
T 1p9a_G 139 ---------------------------LPPGLL-TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIP 188 (290)
T ss_dssp ---------------------------CCTTTT-TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred ---------------------------cChhhc-ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccC
Confidence 111110 23455666666555 34444443 355666666666665 455666
Q ss_pred cCCCCCCCcCeEeEeCCC
Q 038400 461 EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 461 ~~~~~l~~L~~L~l~~c~ 478 (504)
..+...++|+.|++.++|
T Consensus 189 ~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCeEEeCCCC
Confidence 665556666666666544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=160.06 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=125.5
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.++++.|.++++... ...+..+..+++|++|++++|.+..+ |..+..+++|++|++++|..++.++
T Consensus 31 ~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~---------- 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD---------- 97 (285)
T ss_dssp CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC----------
T ss_pred CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC----------
Confidence 468999999987655 22334578899999999999999976 6789999999999999885333321
Q ss_pred CchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCC
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKY 356 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~ 356 (504)
|..+..+++|++|++++|.+... +..+.++++|++|++++|......+..++.+++|++|++++|. ++.++. .+..
T Consensus 98 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 175 (285)
T 1ozn_A 98 -PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG 175 (285)
T ss_dssp -TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred -HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcC
Confidence 45678899999999999887765 4568899999999999976444334558999999999999985 666665 5889
Q ss_pred CCCccEEEeccCCC
Q 038400 357 LSSLETLFLYKCES 370 (504)
Q Consensus 357 l~~L~~L~l~~~~~ 370 (504)
+++|+.|++++|..
T Consensus 176 l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 176 LHSLDRLLLHQNRV 189 (285)
T ss_dssp CTTCCEEECCSSCC
T ss_pred ccccCEEECCCCcc
Confidence 99999999999864
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=163.95 Aligned_cols=196 Identities=21% Similarity=0.248 Sum_probs=115.0
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
++++|+.|.+.++..... + .+..+++|++|++++|.+..++. +..+++|++|++++|. +..
T Consensus 39 ~l~~L~~L~l~~~~i~~l----~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-------------l~~ 99 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI----E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-------------LKN 99 (308)
T ss_dssp HHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-------------CSC
T ss_pred HcCCcCEEEeeCCCccCc----h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-------------CCC
Confidence 345566666655443311 1 24556666666666666665555 6666666666666654 333
Q ss_pred CchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCC
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLS 358 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~ 358 (504)
+| .+..+++|++|++++|.+...+ .+..+++|++|++++|. +..++. ++.+++|+.|++++|. +..++. +..++
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~ 173 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLS 173 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCT
T ss_pred ch-hhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCC
Confidence 33 3555666666666666555443 25666666666666643 333332 5556666666666653 444444 55566
Q ss_pred CccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC
Q 038400 359 SLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS 438 (504)
Q Consensus 359 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 438 (504)
+|+.|++++|. +..++. + ..+++|+.|++++| .++.++.
T Consensus 174 ~L~~L~l~~n~------------------------------------l~~~~~-l--~~l~~L~~L~L~~N-~l~~~~~- 212 (308)
T 1h6u_A 174 KLTTLKADDNK------------------------------------ISDISP-L--ASLPNLIEVHLKNN-QISDVSP- 212 (308)
T ss_dssp TCCEEECCSSC------------------------------------CCCCGG-G--GGCTTCCEEECTTS-CCCBCGG-
T ss_pred CCCEEECCCCc------------------------------------cCcChh-h--cCCCCCCEEEccCC-ccCcccc-
Confidence 66666665552 233332 2 45688999999888 4566663
Q ss_pred CCCCCCcceEecccCccCCcCcc
Q 038400 439 LKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 439 ~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
+..+++|+.|++++|+ +...|.
T Consensus 213 l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccCCCCCCEEEccCCe-eecCCe
Confidence 7888999999998874 555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=166.61 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=135.9
Q ss_pred CCCcccEEEeCCCCcc-ccCccc--cCCCCcCeeeccCCCCccccCcceeccccccCchhhhcc-----ccCCeeeeccc
Q 038400 226 KSQFLRVLNLSESAIE-VCPRKI--GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL-----TSLRAFALTTK 297 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l-----~~L~~L~l~~~ 297 (504)
++++|++|++++|.+. .+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-------------WATRDAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-------------CSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-------------CcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence 6788888888888887 577765 788888888888875 55556666666 78888888888
Q ss_pred cccccc-ccCCCCCCccEEeeeCCCCccc--chhhc--CCCCcccEEeeccCCCccc---cCc-cCCCCCCccEEEeccC
Q 038400 298 QKSLQE-SGIRSLGSLRCLTISGCGDLEH--LFEEI--DQLRVLRTLSIVCCPRLIS---LPP-AIKYLSSLETLFLYKC 368 (504)
Q Consensus 298 ~~~~~~-~~~~~l~~L~~L~l~~~~~l~~--~~~~~--~~l~~L~~L~l~~~~~l~~---l~~-~l~~l~~L~~L~l~~~ 368 (504)
.+...+ ..++++++|++|++++|..... +|..+ +.+++|++|++++|. ++. ++. .+..+++|++|++++|
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC
Confidence 776655 5678888888888888765443 34455 778888888888875 442 222 2346678888888877
Q ss_pred CCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceE
Q 038400 369 ESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETL 448 (504)
Q Consensus 369 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 448 (504)
...... . . ..+ ..+++|+.|++++| .++.+|..+. ++|++|
T Consensus 239 ~l~~~~-----------~----------------------~-~~~--~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L 279 (312)
T 1wwl_A 239 SLRDAA-----------G----------------------A-PSC--DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVL 279 (312)
T ss_dssp CCCSSC-----------C----------------------C-SCC--CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEE
T ss_pred cCCccc-----------c----------------------h-hhh--hhcCCCCEEECCCC-ccChhhhhcc--CCceEE
Confidence 422110 0 0 011 23467777777776 3557776655 778888
Q ss_pred ecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 449 FILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 449 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
++++| .++.+|. +..+++|++|++++++
T Consensus 280 ~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 280 DLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 88776 5666665 7777888888887765
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=154.38 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=56.1
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccccccc-CC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQESG-IR 307 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~-~~ 307 (504)
.+.++++++.++.+|..+. .+|+.|++++|. +..+|. .+.++++|++|++++|.+...+.. +.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-------------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC-------------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 3445555555555544332 345555555443 333322 344455555555555444433322 24
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
++++|++|++++|......+..++.+++|++|++++|......+..++.+++|++|++++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 4555555555554322211223445555555555554322222233455555555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-18 Score=155.11 Aligned_cols=199 Identities=17% Similarity=0.257 Sum_probs=130.4
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecc-ccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTT-KQKSLQE-S 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~-~~~~~~~-~ 304 (504)
..|++|++++|.++.+|. .+..+++|++|++++|..++.+|. ..+..+++|++|++++ |.+...+ .
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----------HSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-----------TTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-----------hHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 367777888887776665 577778888888877632333322 1345677777777776 6655443 3
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCccc---EEeeccCCCccccCc-cCCCCCCcc-EEEeccCCCccccccccc
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLR---TLSIVCCPRLISLPP-AIKYLSSLE-TLFLYKCESLDLNINMEM 379 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~~~~l~~l~~-~l~~l~~L~-~L~l~~~~~l~~~~~~~~ 379 (504)
.+.++++|++|++++|. +..+|. ++.+++|+ +|++++|..++.+|. .+..+++|+ .|++++|.
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~---------- 167 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG---------- 167 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC----------
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC----------
Confidence 46677777777777754 444554 66666666 777777744555554 466777777 77777653
Q ss_pred cCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCC-CCcceEecccCccCC
Q 038400 380 EGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDL-EALETLFILGCPKLS 457 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l-~~L~~L~l~~c~~l~ 457 (504)
++.+|...+ ..++|+.|++++|..++.+| ..+..+ ++|+.|+++++ .++
T Consensus 168 --------------------------l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~ 218 (239)
T 2xwt_C 168 --------------------------FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVT 218 (239)
T ss_dssp --------------------------CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCC
T ss_pred --------------------------CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccc
Confidence 223333331 22678888888876566664 456778 88999999886 577
Q ss_pred cCccCCCCCCCcCeEeEeCCCch
Q 038400 458 SLSEDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 458 ~l~~~~~~l~~L~~L~l~~c~~l 480 (504)
.+|.. .+++|+.|++.++..|
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC---
T ss_pred cCChh--HhccCceeeccCccCC
Confidence 77764 6788888888887653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=166.59 Aligned_cols=170 Identities=24% Similarity=0.288 Sum_probs=109.5
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCC-CcccEEEeCCCCccccCccccCCCCc
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKS-QFLRVLNLSESAIEVCPRKIGNLKHM 253 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~lp~~~~~l~~L 253 (504)
+..++.+.+..+.... ++. ..++|+.|+++++.... +... ++|++|++++|.++.+| .++++++|
T Consensus 90 ~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~--------l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp CTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSC--------CCSCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred cCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCc--------ccCCCCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence 4567777777665532 222 24678888887665431 1112 57888888888888877 58888888
Q ss_pred CeeeccCCCCccccCcce--------eccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 254 RYLDLSGNSKIKKLPKSI--------YCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~--------~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
++|++++| .++.+|..+ ..+.+..+| .++.+++|++|++++|.+...+.. .++|++|++++|. +..
T Consensus 156 ~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~-l~~ 229 (454)
T 1jl5_A 156 KIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI-LEE 229 (454)
T ss_dssp CEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSS
T ss_pred CEEECCCC-cCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc-CCc
Confidence 88888877 355565432 134566666 577888888888887776654432 2477777777763 446
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+| .++.+++|++|++++|. +..+|.. +++|+.|++++|.
T Consensus 230 lp-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY 268 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC
T ss_pred cc-ccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc
Confidence 66 47777777777777764 4445542 2456666665554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=173.08 Aligned_cols=135 Identities=24% Similarity=0.196 Sum_probs=92.4
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
+..+++++.++++.|......+..+..+++|+.|++++|....... .......++|+.|+++++ .++.+
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~----------~~~~~~l~~L~~L~Ls~N-~L~~l 509 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL----------PDIFTELRNLTFLDLSQC-QLEQL 509 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE----------CSCCTTCTTCCEEECTTS-CCCEE
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccC----------chhhhhccccCEEECCCC-ccCCc
Confidence 4455566666666655444445556667777777777765433210 122233458999999997 45555
Q ss_pred -hhhhhcCCCCCccEEEeccCCCCCcc-CcCCCCCCCcceEecccCccCCcCccCCCCC-CCcCeEeEeCCC
Q 038400 410 -PQWLLQGSTDTLQNLLIIDCPNFMAL-PRSLKDLEALETLFILGCPKLSSLSEDMHHV-TTLKSLTIGGCP 478 (504)
Q Consensus 410 -~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~ 478 (504)
|..+ ..+++|+.|+|++| .++.+ |..+..+++|++|++++|......|..+..+ ++|+.|++++||
T Consensus 510 ~~~~f--~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 510 SPTAF--NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTTT--TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ChHHH--cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 4555 67899999999998 46665 4568899999999999985444556667777 689999998765
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=176.81 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=185.6
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMR 254 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~ 254 (504)
...++.+++.++.+.. ..+..+..+++|++|+++++...... + +..+++|++|++++|.++.+|.. ++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~---~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL---D--LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEE---E--CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCc---c--cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 3468999999887732 33567889999999999988764221 1 78899999999999999877643 8999
Q ss_pred eeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhhcC-C
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEEID-Q 332 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~ 332 (504)
+|++++|. +..+|.. .+++|++|++++|.+... +..++.+++|+.|++++|......|..+. .
T Consensus 103 ~L~L~~N~-------------l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 103 TLHAANNN-------------ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp EEECCSSC-------------CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred EEECcCCc-------------CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 99999985 4444332 468899999999987765 45688999999999999876666777776 7
Q ss_pred CCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhh
Q 038400 333 LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQW 412 (504)
Q Consensus 333 l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 412 (504)
+++|++|++++|. +..+|. ...+++|+.|++++|..-..+. .....++|+.|+++++ .+..+|.+
T Consensus 168 l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~------------~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 168 SDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGP------------EFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp TTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCEECG------------GGGGGTTCSEEECTTS-CCCEECTT
T ss_pred CCcccEEecCCCc-cccccc-cccCCCCCEEECCCCCCCCCCH------------hHcCCCCccEEEecCC-cCcccchh
Confidence 9999999999986 666655 4469999999999986443221 1223458999999995 57778887
Q ss_pred hhcCCCCCccEEEeccCCCC-CccCcCCCCCCCcceEecccCc
Q 038400 413 LLQGSTDTLQNLLIIDCPNF-MALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+ ..+++|+.|++++|+.. ..+|.++..++.|+.+.+..+.
T Consensus 233 l--~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 233 L--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp C--CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 7 77899999999998654 3677788899999999887443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-18 Score=166.47 Aligned_cols=259 Identities=17% Similarity=0.209 Sum_probs=178.9
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCC--CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKS--QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
..++.++++++... +..+..+ ..+++|+++++.+...+..+..+++|++|++++|. +. -..
T Consensus 47 ~~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~----------~~~ 109 (336)
T 2ast_B 47 SLWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IE----------VST 109 (336)
T ss_dssp TTSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-EC----------HHH
T ss_pred hhheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cC----------HHH
Confidence 44677777755433 2234444 78999999999988777778889999999999874 11 122
Q ss_pred CchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcc--cchhhcCCCCcccEEeeccCCCccc--cCcc
Q 038400 279 LPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLE--HLFEEIDQLRVLRTLSIVCCPRLIS--LPPA 353 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~ 353 (504)
+|..+..+++|++|++++|.+. ..+..+.++++|++|++++|..+. .++..++.+++|++|++++|..++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 6677888999999999988765 344567889999999999986665 3677788899999999999844553 6677
Q ss_pred CCCCC-CccEEEeccCC-CccccccccccCCCCCCCCCCCCCccceEEEccCCCcc-cchhhhhcCCCCCccEEEeccCC
Q 038400 354 IKYLS-SLETLFLYKCE-SLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLL-ELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 354 l~~l~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
+..++ +|++|++++|. .+.... ........++|+.|++++|..++ ..+..+ ..+++|+.|++++|.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSD---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHH---------HHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCT
T ss_pred HHhcccCCCEEEeCCCcccCCHHH---------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCC
Confidence 78888 99999999985 232100 00011124589999999987554 344455 567999999999997
Q ss_pred CCCc-cCcCCCCCCCcceEecccCccCCcCcc-CCCCC-CCcCeEeEeCCCchhhhcCCCCCCCCC
Q 038400 431 NFMA-LPRSLKDLEALETLFILGCPKLSSLSE-DMHHV-TTLKSLTIGGCPALSERCKRPTGEDWP 493 (504)
Q Consensus 431 ~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~ 493 (504)
.+.. ....+..+++|++|++++| ++. .+..+ .+|+.|+++ |..++...+...+..|.
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~~~~~~~~~ 318 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIARPTIGNKKN 318 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTCSSCSSTTC
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccCCccccccc
Confidence 4432 1224778999999999998 222 22223 336667775 44566554444444333
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=155.46 Aligned_cols=190 Identities=17% Similarity=0.252 Sum_probs=123.1
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+++|++|+++++.+..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+...+ .
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-------------i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-------------ITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------CCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-------------CCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence 3566777777777777665 46677777777777764 555555 667777777777777665553 5
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
+..+++|++|++++|. +..++ .++.+++|++|++++|. +..++. +..+++|+.|++++|..
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l--------------- 163 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV--------------- 163 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC---------------
T ss_pred hcCCCCCCEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC---------------
Confidence 6777777777777754 44444 36777777777777764 444544 56667777777766531
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCC
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHH 465 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 465 (504)
..++. + ..+++|+.|++++| .++.++. +..+++|++|++++| .++.++. +..
T Consensus 164 ---------------------~~~~~-l--~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~ 215 (308)
T 1h6u_A 164 ---------------------SDLTP-L--ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP-LAN 215 (308)
T ss_dssp ---------------------CCCGG-G--TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTT
T ss_pred ---------------------CCChh-h--cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCcccc-ccC
Confidence 11222 2 45567777777766 3455554 666777777777776 4555553 567
Q ss_pred CCCcCeEeEeCCC
Q 038400 466 VTTLKSLTIGGCP 478 (504)
Q Consensus 466 l~~L~~L~l~~c~ 478 (504)
+++|+.|++++|+
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 7777777777665
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=151.73 Aligned_cols=204 Identities=25% Similarity=0.311 Sum_probs=104.0
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.+++|+.|.+.++...... .+..+++|++|++++|.+..++ .+..+++|++|++++|. +..
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-----~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-------------l~~ 99 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-----GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-------------LQS 99 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-----TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-------------CCC
T ss_pred cccceeeeeeCCCCccccc-----ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-------------cCc
Confidence 3445555555544332111 1444555555555555555432 45555555555555543 333
Q ss_pred Cchh-hhccccCCeeeeccccccccccc-CCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC-ccC
Q 038400 279 LPKD-IRHLTSLRAFALTTKQKSLQESG-IRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP-PAI 354 (504)
Q Consensus 279 lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l 354 (504)
+|.. +..+++|++|++++|.+...++. +..+++|++|++++|. +..++ ..++.+++|++|++++|. ++.++ ..+
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 177 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVF 177 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHh
Confidence 3322 34555555555555554433322 4455555555555543 22222 223455555555555553 22232 223
Q ss_pred CCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhh-hhcCCCCCccEEEeccCCCCC
Q 038400 355 KYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQW-LLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~ 433 (504)
+.+++|+.|++++|. +..++.. + ..+++|+.|++++|+.
T Consensus 178 ~~l~~L~~L~L~~N~------------------------------------l~~~~~~~~--~~l~~L~~L~l~~N~~-- 217 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQ------------------------------------LKSVPDGVF--DRLTSLQYIWLHDNPW-- 217 (272)
T ss_dssp TTCTTCCEEECCSSC------------------------------------CSCCCTTTT--TTCTTCCEEECCSSCB--
T ss_pred cCCccCCEEECCCCc------------------------------------CCccCHHHH--hCCcCCCEEEccCCCc--
Confidence 445555555555442 2233222 2 4567888888887742
Q ss_pred ccCcCCCCCCCcceEecccCccCCcCccCCCCCCC
Q 038400 434 ALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTT 468 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~ 468 (504)
.+.+++|+.|++..+.....+|..++.++.
T Consensus 218 -----~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 -----DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -----CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -----cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 245667888888877666677776665544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=150.57 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=133.3
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQE-S 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-~ 304 (504)
+.|++|++++|.++.++. .+.++++|++|++++|. +..++. .+..+++|++|++++|.+...+ .
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-------------IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-------------CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-------------CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 468999999999987765 78889999999999885 444443 5678889999999988776554 5
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc-ccCccCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI-SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
.+.++++|++|++++|......+..++.+++|++|++++|.... .+|..++.+++|++|++++|........
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~------- 167 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------- 167 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-------
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-------
Confidence 68889999999998875444333468888999999999876333 3678888889999999988753322100
Q ss_pred CCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCcc-EEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQ-NLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED 462 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 462 (504)
.+. .+ ..++.|. .|+++++ .++.++.......+|+.|++++|. ++.+|..
T Consensus 168 ------------------------~~~-~l--~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 218 (276)
T 2z62_A 168 ------------------------DLR-VL--HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDG 218 (276)
T ss_dssp ------------------------GGH-HH--HTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTT
T ss_pred ------------------------Hhh-hh--hhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHh
Confidence 000 00 1122222 5666555 344554444444567777776663 5555543
Q ss_pred -CCCCCCcCeEeEe
Q 038400 463 -MHHVTTLKSLTIG 475 (504)
Q Consensus 463 -~~~l~~L~~L~l~ 475 (504)
+..+++|+.|+++
T Consensus 219 ~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 219 IFDRLTSLQKIWLH 232 (276)
T ss_dssp TTTTCCSCCEEECC
T ss_pred HhcccccccEEEcc
Confidence 3566667777766
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=151.47 Aligned_cols=152 Identities=19% Similarity=0.151 Sum_probs=110.5
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccc
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~ 275 (504)
+.++++++.+.+.++..... + . .-.+.+++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i---p-~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL---P-P--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC---C-S--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-------------
T ss_pred ccccCCccEEECCCCCCCcC---C-C--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-------------
Confidence 34567788888876554311 1 1 1136788899999988865 4678888899999998875
Q ss_pred cccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cC
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AI 354 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l 354 (504)
+..+|.. ..+++|++|++++|.+...+..+..+++|++|++++|......+..++.+++|++|++++|. ++.+|. .+
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 144 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLL 144 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred cCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhc
Confidence 4444443 57888999999988888777778888899999998865433333668888999999998875 445544 46
Q ss_pred CCCCCccEEEeccCC
Q 038400 355 KYLSSLETLFLYKCE 369 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~ 369 (504)
..+++|+.|++++|.
T Consensus 145 ~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 145 TPTPKLEKLSLANNN 159 (290)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred ccccCCCEEECCCCc
Confidence 778888888888874
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-18 Score=164.54 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=148.1
Q ss_pred CCCCeeEEeeecCCcccchHHHHHH-hcCCCcccEEEeCCCCccccCccccCC-----CCcCeeeccCCCCccccCccee
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESC-ISKSQFLRVLNLSESAIEVCPRKIGNL-----KHMRYLDLSGNSKIKKLPKSIY 272 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~lp~~~~ 272 (504)
++++|+.|+++++... ...+... +..+++|++|++++|.+...|..++.+ ++|++|++++|.
T Consensus 93 ~l~~L~~L~L~~n~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~---------- 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH---------- 160 (312)
T ss_dssp TTSCCCEEEEEEEBCB--SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS----------
T ss_pred CcCCccEEEccCCccc--chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC----------
Confidence 6899999999977644 1111111 378999999999999999888888777 899999999986
Q ss_pred ccccccCc-hhhhccccCCeeeecccccccc---cccC--CCCCCccEEeeeCCCCcc---cch-hhcCCCCcccEEeec
Q 038400 273 CLELEELP-KDIRHLTSLRAFALTTKQKSLQ---ESGI--RSLGSLRCLTISGCGDLE---HLF-EEIDQLRVLRTLSIV 342 (504)
Q Consensus 273 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~---~~~~--~~l~~L~~L~l~~~~~l~---~~~-~~~~~l~~L~~L~l~ 342 (504)
+..+| ..++.+++|++|++++|..... +..+ .++++|++|++++|. +. .++ ..+..+++|++|+++
T Consensus 161 ---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 161 ---SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp ---CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECT
T ss_pred ---CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECC
Confidence 55555 5688999999999999975432 2334 899999999999975 44 333 234578999999999
Q ss_pred cCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCc
Q 038400 343 CCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTL 421 (504)
Q Consensus 343 ~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 421 (504)
+|......| ..+..+++|++|++++|.. +.+|.++ . ++|
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l------------------------------------~~ip~~~--~--~~L 276 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGL------------------------------------KQVPKGL--P--AKL 276 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCC------------------------------------SSCCSSC--C--SEE
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCcc------------------------------------Chhhhhc--c--CCc
Confidence 986444343 4566788999999998742 2344443 1 678
Q ss_pred cEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 422 QNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 422 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+.|++++| .++.+|. +..+++|++|++++++
T Consensus 277 ~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 277 SVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred eEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 88888877 4666676 8888889999988874
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=164.28 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=157.4
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCc-------------ccEEEeCCCCccc
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQF-------------LRVLNLSESAIEV 242 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~ 242 (504)
..++.+.+..+.+ ..++..+.++++|+.|.++++... ...+..++++.+ +++|+++++.++.
T Consensus 11 ~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWE---RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHH---HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccchhhhcccCch--hhCChhHhcccchhhhhccCCccc---ccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3556677766665 456777888888888888754321 112223444443 4888888888877
Q ss_pred cCccccCCCCcCeeeccCCCCccccCccee--------ccccccCchhhhccccCCeeeecccccccccccCCCCCCccE
Q 038400 243 CPRKIGNLKHMRYLDLSGNSKIKKLPKSIY--------CLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRC 314 (504)
Q Consensus 243 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~--------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 314 (504)
+|.. .++|++|++++|. ++.+|..+. .+.+..+|.. .++|++|++++|.+...+ .++++++|++
T Consensus 86 lp~~---~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCSC---CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCC---cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 7763 3678888888763 444554321 2223333321 157888888888777665 5888888888
Q ss_pred EeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCc
Q 038400 315 LTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH 394 (504)
Q Consensus 315 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 394 (504)
|++++|. +..+|.. ..+|++|++++|. ++.+| .++.+++|+.|++++|....+. ....+
T Consensus 158 L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~---------------~~~~~ 216 (454)
T 1jl5_A 158 IDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLP---------------DLPLS 216 (454)
T ss_dssp EECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCC---------------CCCTT
T ss_pred EECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCC---------------CCcCc
Confidence 8888864 4456643 3588888888874 55677 5788888899988887532211 11248
Q ss_pred cceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeE
Q 038400 395 LRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTI 474 (504)
Q Consensus 395 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 474 (504)
|+.|+++++ .+..+|. + ..+++|+.|++++| .++.+|.. +++|++|++++| .++.+|.. +++|+.|++
T Consensus 217 L~~L~l~~n-~l~~lp~-~--~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 217 LESIVAGNN-ILEELPE-L--QNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDN-YLTDLPEL---PQSLTFLDV 284 (454)
T ss_dssp CCEEECCSS-CCSSCCC-C--TTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred ccEEECcCC-cCCcccc-c--CCCCCCCEEECCCC-cCCccccc---ccccCEEECCCC-cccccCcc---cCcCCEEEC
Confidence 999999986 5667774 4 57899999999987 46667653 478999999887 46667653 467788888
Q ss_pred eCCC
Q 038400 475 GGCP 478 (504)
Q Consensus 475 ~~c~ 478 (504)
++|.
T Consensus 285 s~N~ 288 (454)
T 1jl5_A 285 SENI 288 (454)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-17 Score=154.79 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=151.4
Q ss_pred CCCeeEEeeecCCcccchHHHHH--HhcCCCcccEEEeCCCCcc-ccCccc--cCCCCcCeeeccCCCCccccCcceecc
Q 038400 200 LGRVRTIVFSTDDEKISQSFVES--CISKSQFLRVLNLSESAIE-VCPRKI--GNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
...++.+.+...... ...... .+..++.|++|++++|.+. ..|..+ ..+++|++|++++|......|
T Consensus 63 ~~~l~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~------ 134 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP--AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS------ 134 (310)
T ss_dssp SCCCCEEEECSCCCB--HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS------
T ss_pred hcceeEEEEeCCcCC--HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh------
Confidence 345677777655432 222211 1223466999999999988 566666 899999999999986221111
Q ss_pred ccccCc-hhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCccc--ch--hhcCCCCcccEEeeccCCCcc
Q 038400 275 ELEELP-KDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEH--LF--EEIDQLRVLRTLSIVCCPRLI 348 (504)
Q Consensus 275 ~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~--~~--~~~~~l~~L~~L~l~~~~~l~ 348 (504)
.++ ..+..+++|++|++++|.+...+ ..++.+++|++|++++|..... ++ ..++.+++|++|++++|. ++
T Consensus 135 ---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 210 (310)
T 4glp_A 135 ---WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-ME 210 (310)
T ss_dssp ---SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CC
T ss_pred ---hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CC
Confidence 111 23457889999999988876554 5688899999999999764432 22 223688999999999985 55
Q ss_pred ccCc----cCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhh-cCCCCCccE
Q 038400 349 SLPP----AIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLL-QGSTDTLQN 423 (504)
Q Consensus 349 ~l~~----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~ 423 (504)
.++. .++.+++|++|++++|...... |..+. ...+++|+.
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-----------------------------------p~~~~~~~~~~~L~~ 255 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATV-----------------------------------NPSAPRCMWSSALNS 255 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCC-----------------------------------CSCCSSCCCCTTCCC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccc-----------------------------------hhhHHhccCcCcCCE
Confidence 4444 2466788999999888533210 11110 012367888
Q ss_pred EEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 424 LLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 424 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
|++++| .++.+|..+. ++|++|++++| .++.+|. +..+++|+.|++++++
T Consensus 256 L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 256 LNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred EECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 888776 4567776654 78888888887 5666654 5677888888888875
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=151.72 Aligned_cols=199 Identities=18% Similarity=0.169 Sum_probs=147.6
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++.... .....+.++++|++|++++|.+..++. .+..+++|++|++++|. +..+
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~ 91 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------IQSL 91 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------CCEE
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-------------cCcc
Confidence 479999999877552 223357889999999999999997764 78999999999999986 4444
Q ss_pred c-hhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcc-cchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 P-KDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLE-HLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
+ ..+.++++|++|++++|.+...+. .+.++++|++|++++|.... .+|..++.+++|++|++++|......+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 4 457889999999999988776554 68999999999999976443 36889999999999999998643333445665
Q ss_pred CCCcc----EEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCC
Q 038400 357 LSSLE----TLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNF 432 (504)
Q Consensus 357 l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 432 (504)
+++|+ +|++++|..- .++... ....+|+.|++++|. +
T Consensus 172 l~~L~~l~l~L~ls~n~l~------------------------------------~~~~~~--~~~~~L~~L~L~~n~-l 212 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMN------------------------------------FIQPGA--FKEIRLKELALDTNQ-L 212 (276)
T ss_dssp HHTCTTCCEEEECCSSCCC------------------------------------EECTTS--SCSCCEEEEECCSSC-C
T ss_pred hhhccccceeeecCCCccc------------------------------------ccCccc--cCCCcccEEECCCCc-e
Confidence 66666 7777776422 222222 122467777777764 5
Q ss_pred CccCcC-CCCCCCcceEecccCc
Q 038400 433 MALPRS-LKDLEALETLFILGCP 454 (504)
Q Consensus 433 ~~l~~~-~~~l~~L~~L~l~~c~ 454 (504)
+.+|.. +..+++|+.|++++++
T Consensus 213 ~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 213 KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCHhHhcccccccEEEccCCc
Confidence 555543 5778888888888764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=165.15 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=106.8
Q ss_pred CCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCC
Q 038400 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLK 251 (504)
Q Consensus 173 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~ 251 (504)
..|..++.+++..+.+. ...+..+.++++|++|+++++.+. .+.+..|.++++|++|+|++|.++.+|. .+.++.
T Consensus 49 ~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 45678899999988773 233457889999999999987655 2334568899999999999999998875 579999
Q ss_pred CcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccc--ccccCCCCCCccEEeeeCCC
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 321 (504)
+|++|++++|. +..+|. .++++++|++|++++|.+.. .+..++.+++|++|++++|.
T Consensus 125 ~L~~L~Ls~N~-------------l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 125 SLQKLVAVETN-------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCCEEECTTSC-------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-------------CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999999885 666654 37899999999999988754 35667889999999998865
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-18 Score=168.97 Aligned_cols=247 Identities=17% Similarity=0.127 Sum_probs=147.4
Q ss_pred hhhhhcCCCCeeEEeeecCCcccc-hHHHHHHhcCCCcccEEEeCCCCcc----ccCccc-------cCCCCcCeeeccC
Q 038400 193 FSSLLSDLGRVRTIVFSTDDEKIS-QSFVESCISKSQFLRVLNLSESAIE----VCPRKI-------GNLKHMRYLDLSG 260 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~----~lp~~~-------~~l~~L~~L~l~~ 260 (504)
+...+..+++|+.|.++++.+... ...+...+..+++|++|+|++|.+. .+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345566778888888887654411 1223344677888888888887544 234333 6788888888888
Q ss_pred CCCccccCcceeccccccCchhhhccccCCeeeecccccccc-----cccCCCC---------CCccEEeeeCCCCc-cc
Q 038400 261 NSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-----ESGIRSL---------GSLRCLTISGCGDL-EH 325 (504)
Q Consensus 261 ~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l---------~~L~~L~l~~~~~l-~~ 325 (504)
|. ++ ......+|..+..+++|++|++++|.+... +..+..+ ++|++|++++|... ..
T Consensus 104 n~-l~-------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 104 NA-FG-------PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CC-CC-------TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred Cc-CC-------HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 75 11 011223677778888888888888776422 1223333 78888888887543 23
Q ss_pred ch---hhcCCCCcccEEeeccCCCcc-----ccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccce
Q 038400 326 LF---EEIDQLRVLRTLSIVCCPRLI-----SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRR 397 (504)
Q Consensus 326 ~~---~~~~~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 397 (504)
++ ..+..+++|++|++++|.... ..+..+..+++|++|++++|..-..... . ........++|+.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~------l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-A------LAIALKSWPNLRE 248 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-H------HHHHGGGCTTCCE
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-H------HHHHHccCCCcCE
Confidence 33 466678888888888875321 2333677788888888888753110000 0 0000112335667
Q ss_pred EEEccCCCccc-----chhhhhcCCCCCccEEEeccCCCCC----ccCcCC-CCCCCcceEecccCcc
Q 038400 398 VVIGEITQLLE-----LPQWLLQGSTDTLQNLLIIDCPNFM----ALPRSL-KDLEALETLFILGCPK 455 (504)
Q Consensus 398 L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~~~-~~l~~L~~L~l~~c~~ 455 (504)
|+++++. +.. ++.++....+++|+.|++++|..-. .+|..+ .++++|++|++++|+.
T Consensus 249 L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 249 LGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp EECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred EECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 7776653 322 2344322346777777777764322 256555 4567777777777743
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-16 Score=161.47 Aligned_cols=232 Identities=21% Similarity=0.191 Sum_probs=179.1
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
.++.+.+..+.+. .++..+. ++|+.|.++++.+.... ..+++|++|++++|.++.+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~lp-------~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSLP-------ALPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSCCC-------CCCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCCCC-------CcCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 3577787777663 3343333 78999999987755211 157899999999999998887 77899999
Q ss_pred eccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcc
Q 038400 257 DLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVL 336 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 336 (504)
++++|. +..+|. .+++|+.|++++|.+...+.. +++|++|++++| .+..+|. .+++|
T Consensus 107 ~Ls~N~-------------l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L 163 (622)
T 3g06_A 107 SIFSNP-------------LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA---LPSEL 163 (622)
T ss_dssp EECSCC-------------CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTC
T ss_pred ECcCCc-------------CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCC
Confidence 999885 566665 568899999999988777653 589999999997 4555664 45789
Q ss_pred cEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcC
Q 038400 337 RTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQG 416 (504)
Q Consensus 337 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 416 (504)
+.|++++|. ++.+| ..+++|+.|++++|..-.+. ...++|+.|.+.++ .+..+|.
T Consensus 164 ~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~l~---------------~~~~~L~~L~L~~N-~l~~l~~----- 218 (622)
T 3g06_A 164 CKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLASLP---------------TLPSELYKLWAYNN-RLTSLPA----- 218 (622)
T ss_dssp CEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCC---------------CCCTTCCEEECCSS-CCSSCCC-----
T ss_pred CEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCCCC---------------CccchhhEEECcCC-cccccCC-----
Confidence 999999975 67777 45789999999998633211 12358999999985 5666664
Q ss_pred CCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 417 STDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.+++|+.|++++| .++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++|.
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 3489999999988 677788 56689999999998 6888887 67999999999984
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=146.26 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=147.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCC-ccccCc-cccCCCCcCeeeccC-CCCccccCcceeccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESA-IEVCPR-KIGNLKHMRYLDLSG-NSKIKKLPKSIYCLELE 277 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~-~~~~~~lp~~~~~~~l~ 277 (504)
.+++.|.++++... ...+..+..+++|++|++++|. ++.+|. .+..+++|++|++++ |. +.
T Consensus 31 ~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-------------l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-------------LT 94 (239)
T ss_dssp TTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-------------CC
T ss_pred CcccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-------------ee
Confidence 47899999877655 2233457789999999999997 887775 788999999999998 54 45
Q ss_pred cCch-hhhccccCCeeeecccccccccccCCCCCCcc---EEeeeCCCCcccchh-hcCCCCccc-EEeeccCCCccccC
Q 038400 278 ELPK-DIRHLTSLRAFALTTKQKSLQESGIRSLGSLR---CLTISGCGDLEHLFE-EIDQLRVLR-TLSIVCCPRLISLP 351 (504)
Q Consensus 278 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~-~~~~l~~L~-~L~l~~~~~l~~l~ 351 (504)
.+|. .+..+++|++|++++|.+...+. +..+++|+ +|++++|..+..+|. .++.+++|+ .|++++|. ++.+|
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~ 172 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQ 172 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEEC
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccC
Confidence 5543 46789999999999998877765 88888888 999999856777765 588999999 99999985 56777
Q ss_pred ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCC-CCccEEEeccCC
Q 038400 352 PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGST-DTLQNLLIIDCP 430 (504)
Q Consensus 352 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~ 430 (504)
......++|+.|++++|..++ .+|...+ ..+ ++|+.|+++++
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~-----------------------------------~i~~~~~-~~l~~~L~~L~l~~N- 215 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLT-----------------------------------VIDKDAF-GGVYSGPSLLDVSQT- 215 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCC-----------------------------------EECTTTT-TTCSBCCSEEECTTC-
T ss_pred HhhcCCCCCCEEEcCCCCCcc-----------------------------------cCCHHHh-hccccCCcEEECCCC-
Confidence 655444788888888774332 2222111 345 77888888876
Q ss_pred CCCccCcCCCCCCCcceEecccCcc
Q 038400 431 NFMALPRSLKDLEALETLFILGCPK 455 (504)
Q Consensus 431 ~l~~l~~~~~~l~~L~~L~l~~c~~ 455 (504)
.++.+|.. .+++|+.|.+.++..
T Consensus 216 ~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 216 SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCCCCT--TCTTCSEEECTTC--
T ss_pred ccccCChh--HhccCceeeccCccC
Confidence 46677754 678888888887653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-16 Score=143.80 Aligned_cols=194 Identities=23% Similarity=0.267 Sum_probs=138.0
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
..++++++++..... +. .-...|+.|++++|.+..+|. .+..+++|++|++++|. +..+|
T Consensus 17 ~~~~l~~~~~~l~~i----p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~i~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI----PS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-------------LQTLP 77 (270)
T ss_dssp TTTEEECTTSCCSSC----CS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-------------CSCCC
T ss_pred CCCEEEccCCCCCcc----CC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-------------cCeeC
Confidence 356677765543311 11 112578999999999987775 78899999999999875 56666
Q ss_pred hhh-hccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCC
Q 038400 281 KDI-RHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYL 357 (504)
Q Consensus 281 ~~i-~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l 357 (504)
..+ ..+++|++|++++|.+...+. .+.++++|++|++++|......+..++.+++|++|++++|. ++.+|. .+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCC
Confidence 554 678999999999888776554 46889999999999976544445567899999999999985 555654 47889
Q ss_pred CCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCccC
Q 038400 358 SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMALP 436 (504)
Q Consensus 358 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~ 436 (504)
++|+.|++++|.... ++. .+ ..+++|+.|++++| .++.+|
T Consensus 157 ~~L~~L~L~~n~l~~------------------------------------~~~~~~--~~l~~L~~L~L~~N-~l~~~~ 197 (270)
T 2o6q_A 157 TSLKELRLYNNQLKR------------------------------------VPEGAF--DKLTELKTLKLDNN-QLKRVP 197 (270)
T ss_dssp TTCCEEECCSSCCSC------------------------------------CCTTTT--TTCTTCCEEECCSS-CCSCCC
T ss_pred cccceeEecCCcCcE------------------------------------eChhHh--ccCCCcCEEECCCC-cCCcCC
Confidence 999999998874322 111 12 34567777777776 445554
Q ss_pred c-CCCCCCCcceEecccCc
Q 038400 437 R-SLKDLEALETLFILGCP 454 (504)
Q Consensus 437 ~-~~~~l~~L~~L~l~~c~ 454 (504)
. .+..+++|+.|++++|+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhccccCCCEEEecCCC
Confidence 4 36667777777777764
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-16 Score=148.95 Aligned_cols=220 Identities=17% Similarity=0.170 Sum_probs=167.3
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCee-eecccccccc-cc
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF-ALTTKQKSLQ-ES 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L-~l~~~~~~~~-~~ 304 (504)
.+++.|+|++|.++.+|. .+.++++|++|++++|...+.+|.. .+.++++|+++ .+..|.+... +.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----------~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-----------VFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----------SBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----------HhhcchhhhhhhcccCCcccccCch
Confidence 679999999999999986 5899999999999998633333322 24677787764 4455665554 55
Q ss_pred cCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCC-CccEEEeccCCCccccccccccC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLS-SLETLFLYKCESLDLNINMEMEG 381 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~ 381 (504)
.+..+++|++|++++|.. ..+| ..+....++..|++.++..+..++. .+..+. .++.|++++|..-++
T Consensus 99 ~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-------- 169 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-------- 169 (350)
T ss_dssp SBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--------
T ss_pred hhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--------
Confidence 689999999999999754 4444 3455667788999988777887765 345554 688999998864433
Q ss_pred CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc
Q 038400 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
........+|+.+.+.++..++.+|...+ ..+++|+.|+++++ .++.+|. ..+.+|+.|.+.++..++.+|.
T Consensus 170 ----~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 170 ----HNSAFNGTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ----CTTSSTTEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred ----ChhhccccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCC
Confidence 22223345899999998889999986542 57899999999998 6888886 4478899999999999999994
Q ss_pred CCCCCCCcCeEeEeC
Q 038400 462 DMHHVTTLKSLTIGG 476 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~ 476 (504)
+..+++|+.+++.+
T Consensus 242 -l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTCCSCCEEECSC
T ss_pred -chhCcChhhCcCCC
Confidence 78899999999864
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=146.51 Aligned_cols=190 Identities=23% Similarity=0.273 Sum_probs=125.4
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+++|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|.+...++.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-------------l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-------------LHDIS-ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-------------CCCCG-GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-------------CCCch-hhcCCCCCCEEECCCCccCccChh
Confidence 4577888888888777654 46778888888888775 44443 566777788888877776655433
Q ss_pred -CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
+.++++|++|++++|......+..++.+++|++|++++|. ++.++. .++.+++|+.|++++|.
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-------------- 168 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-------------- 168 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--------------
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC--------------
Confidence 5777777777777765433333446777777777777774 444443 35677777777777763
Q ss_pred CCCCCCCCCCccceEEEccCCCcccchhh-hhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLELPQW-LLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
+..++.. + ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|+..
T Consensus 169 ----------------------l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 218 (272)
T 3rfs_A 169 ----------------------LQSLPEGVF--DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 218 (272)
T ss_dssp ----------------------CCCCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC-----
T ss_pred ----------------------cCccCHHHh--cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcc-----
Confidence 2222221 2 456889999999885 44444 45788999999999988532
Q ss_pred CCCCCCCcCeEeEeCC
Q 038400 462 DMHHVTTLKSLTIGGC 477 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~c 477 (504)
..+++|+.|++..+
T Consensus 219 --~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 219 --CTCPGIRYLSEWIN 232 (272)
T ss_dssp --CCTTTTHHHHHHHH
T ss_pred --ccCcHHHHHHHHHH
Confidence 23556666665543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=146.43 Aligned_cols=219 Identities=15% Similarity=0.081 Sum_probs=165.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCc-cccCCCCcCee-eccCCCCccccCcceeccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPR-KIGNLKHMRYL-DLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~-~~~~l~~L~~L-~l~~~~~~~~lp~~~~~~~l~ 277 (504)
++++.|.++++.+. .+....|.++++|++|+|++|.+. .+|. .+.++++|+.+ .+++|. +.
T Consensus 30 ~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-------------l~ 93 (350)
T 4ay9_X 30 RNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-------------LL 93 (350)
T ss_dssp TTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-------------CC
T ss_pred CCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-------------cc
Confidence 57999999987765 333456889999999999999975 4654 57888887764 444443 55
Q ss_pred cCc-hhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchh-hcCCC-CcccEEeeccCCCccccCcc
Q 038400 278 ELP-KDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFE-EIDQL-RVLRTLSIVCCPRLISLPPA 353 (504)
Q Consensus 278 ~lp-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~l~~l~~~ 353 (504)
.+| ..+..+++|++|++++|.+...++ .+....++..|++.++..+..++. .+..+ ..++.|++++|. ++.++..
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~ 172 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS 172 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh
Confidence 553 346789999999999988766543 455677888999988888887764 34554 468999999874 7788887
Q ss_pred CCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 354 IKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 354 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
.....+|+.|.+.++..++... ........+|+.|+++++ .++.+|.. .+.+|+.|.+.++..++
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELP----------NDVFHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLK 237 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCC
T ss_pred hccccchhHHhhccCCcccCCC----------HHHhccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcC
Confidence 7778899999998876655321 112233448999999985 68888764 46899999999999999
Q ss_pred ccCcCCCCCCCcceEeccc
Q 038400 434 ALPRSLKDLEALETLFILG 452 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~ 452 (504)
.+|. +..+++|+.+++.+
T Consensus 238 ~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-TTTCCSCCEEECSC
T ss_pred cCCC-chhCcChhhCcCCC
Confidence 9995 88999999999865
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-17 Score=167.90 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=149.4
Q ss_pred CeEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCC----cccEEEeCCCCcc-----ccC
Q 038400 177 RVRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQ----FLRVLNLSESAIE-----VCP 244 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~-----~lp 244 (504)
.++.+.+..+.+... .+...+..+++|++|+++++... ..........+. +|++|++++|.+. .+|
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 456777777766432 33455666777888888765532 222333333444 5888888888776 356
Q ss_pred ccccCCCCcCeeeccCCCCcccc-Ccc-----------ee-----ccccc-----cCchhhhccccCCeeeecccccccc
Q 038400 245 RKIGNLKHMRYLDLSGNSKIKKL-PKS-----------IY-----CLELE-----ELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~l-p~~-----------~~-----~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
..+..+++|++|++++|. ++.. +.. +. .+.+. .++..+..+++|++|++++|.+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 677777888888888774 3211 100 00 01111 2344445556666666665554322
Q ss_pred c-ccCC-----CCCCccEEeeeCCCCcc----cchhhcCCCCcccEEeeccCCCccc-----c-CccCCCCCCccEEEec
Q 038400 303 E-SGIR-----SLGSLRCLTISGCGDLE----HLFEEIDQLRVLRTLSIVCCPRLIS-----L-PPAIKYLSSLETLFLY 366 (504)
Q Consensus 303 ~-~~~~-----~l~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~l~~-----l-~~~l~~l~~L~~L~l~ 366 (504)
. ..+. .+++|++|++++|.... .++..+..+++|++|++++|. ++. + +.....+++|++|+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECc
Confidence 1 1111 23466666666654322 134555566666666666653 221 1 2222345666666666
Q ss_pred cCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-----hhhhhcCCCCCccEEEeccCCCCCc----cCc
Q 038400 367 KCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-----PQWLLQGSTDTLQNLLIIDCPNFMA----LPR 437 (504)
Q Consensus 367 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~----l~~ 437 (504)
+|..-..... .+ .......++|+.|+++++. +.+. ...+ ....++|+.|++++|..-.. ++.
T Consensus 265 ~n~l~~~~~~-~l------~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 265 ECGITAKGCG-DL------CRVLRAKESLKELSLAGNE-LGDEGARLLCETL-LEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp TSCCCHHHHH-HH------HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHH-TSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCCCCHHHHH-HH------HHHHhhCCCcceEECCCCC-CchHHHHHHHHHh-ccCCccceeeEcCCCCCchHHHHHHHH
Confidence 6632211000 00 0000113467777777653 3221 1111 12335778888877752221 345
Q ss_pred CCCCCCCcceEecccCccCCcC-c----cCCC-CCCCcCeEeEeCCC
Q 038400 438 SLKDLEALETLFILGCPKLSSL-S----EDMH-HVTTLKSLTIGGCP 478 (504)
Q Consensus 438 ~~~~l~~L~~L~l~~c~~l~~l-~----~~~~-~l~~L~~L~l~~c~ 478 (504)
.+..+++|++|++++|. +... + ..+. ..++|++|++++|.
T Consensus 336 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 55667888888888873 4322 1 2222 25788888888885
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-17 Score=164.76 Aligned_cols=285 Identities=19% Similarity=0.216 Sum_probs=194.2
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCccc-chHHHHHHhcCCCcccEEEeCCCCccc-cCcc-ccCCC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKI-SQSFVESCISKSQFLRVLNLSESAIEV-CPRK-IGNLK 251 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~-~~~l~ 251 (504)
+..++.+.+..+.+....+...+..+++|++|.++++.... ....+...+..+++|++|++++|.+.. .+.. ...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34678899988887655666668889999999999887542 122456678889999999999999873 2222 23344
Q ss_pred ----CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc-c----c-CCCCCCccEEeeeCCC
Q 038400 252 ----HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE-S----G-IRSLGSLRCLTISGCG 321 (504)
Q Consensus 252 ----~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~----~-~~~l~~L~~L~l~~~~ 321 (504)
+|++|++++|. ++ ......+|..+..+++|++|++++|.+.... . . ....++|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~-i~-------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LT-------GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp STTCCCCEEECTTSC-CB-------GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCC-CC-------HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 79999999985 21 1112356788889999999999998865321 1 1 2346789999999986
Q ss_pred Ccc----cchhhcCCCCcccEEeeccCCCccccCccCC-----CCCCccEEEeccCCCccccccccccCCCCCCCCCCCC
Q 038400 322 DLE----HLFEEIDQLRVLRTLSIVCCPRLISLPPAIK-----YLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTR 392 (504)
Q Consensus 322 ~l~----~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~-----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 392 (504)
... .++..++.+++|++|++++|.....-+..+. ..++|++|++++|..-..... . ........
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~------l~~~l~~~ 226 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-D------LCGIVASK 226 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-H------HHHHHHHC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-H------HHHHHHhC
Confidence 443 3466777889999999999863222122221 356899999999853321000 0 00001123
Q ss_pred CccceEEEccCCCcccc-----hhhhhcCCCCCccEEEeccCCCCCc-----cCcCCCCCCCcceEecccCccCCc----
Q 038400 393 PHLRRVVIGEITQLLEL-----PQWLLQGSTDTLQNLLIIDCPNFMA-----LPRSLKDLEALETLFILGCPKLSS---- 458 (504)
Q Consensus 393 ~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~---- 458 (504)
++|+.|+++++. +... ...+ ...+++|+.|++++| .++. ++..+..+++|++|++++|. +..
T Consensus 227 ~~L~~L~Ls~n~-l~~~~~~~l~~~~-~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 302 (461)
T 1z7x_W 227 ASLRELALGSNK-LGDVGMAELCPGL-LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGAR 302 (461)
T ss_dssp TTCCEEECCSSB-CHHHHHHHHHHHH-TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHH
T ss_pred CCccEEeccCCc-CChHHHHHHHHHH-hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHH
Confidence 589999999873 4332 1222 135789999999998 4554 67777789999999999984 432
Q ss_pred -CccCC-CCCCCcCeEeEeCCC
Q 038400 459 -LSEDM-HHVTTLKSLTIGGCP 478 (504)
Q Consensus 459 -l~~~~-~~l~~L~~L~l~~c~ 478 (504)
++..+ ...++|+.|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCC
Confidence 22222 234799999999997
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-15 Score=135.56 Aligned_cols=172 Identities=22% Similarity=0.260 Sum_probs=108.1
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQES-G 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~ 305 (504)
...++++++++.++.+|..+. .+|+.|++++|. +..++. .+.++++|++|++++|.+...++ .
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-------------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-------------cCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 356778888888888877665 578888888775 444432 46677778888887776655443 3
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
+.++++|++|++++|......+..++.+++|++|++++|. ++.+|. .+..+++|+.|++++|..-
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------------- 144 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ------------- 144 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------------
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCC-------------
Confidence 6777777777777765433333456777777777777764 445544 3566777777777766321
Q ss_pred CCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCc
Q 038400 385 NHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCP 454 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 454 (504)
.+|. .+ ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|+
T Consensus 145 -----------------------~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 145 -----------------------SIPAGAF--DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -----------------------CCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -----------------------ccCHHHc--CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 1221 12 345666666666653 34443 346666777777776654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=153.52 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=125.4
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
.+|++|+++++.++.+|..+. ++|++|++++|. +..+| ..+++|++|++++|.+...+. +.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-------------l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-------------LISLP---ELPASLEYLDACDNRLSTLPE-LP 119 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-------------CSCCC---CCCTTCCEEECCSSCCSCCCC-CC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-------------Ccccc---cccCCCCEEEccCCCCCCcch-hh
Confidence 367778888877777777653 678888887764 44555 345777888887777666655 54
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHD 387 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 387 (504)
+ +|++|++++|. +..+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|..-.++ .
T Consensus 120 ~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp------------~ 177 (571)
T 3cvr_A 120 A--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLP------------E 177 (571)
T ss_dssp T--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC------------C
T ss_pred c--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcc------------h
Confidence 4 78888887754 444665 57778888887764 555665 4677888888777532211 1
Q ss_pred CCCCCCccceEEEccCCCcccchhhhhcCCCCCc-------cEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 388 RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTL-------QNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
.. ++|+.|+++++ .++.+|. +. .+| +.|++++| .++.+|..+..+++|+.|++++|+....+|
T Consensus 178 --l~-~~L~~L~Ls~N-~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 --LP-ESLEALDVSTN-LLESLPA-VP----VRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --CC-TTCCEEECCSS-CCSSCCC-CC------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred --hh-CCCCEEECcCC-CCCchhh-HH----HhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 11 56777777774 5666665 31 155 99999887 577889888889999999999986555566
Q ss_pred cCCC
Q 038400 461 EDMH 464 (504)
Q Consensus 461 ~~~~ 464 (504)
..+.
T Consensus 248 ~~l~ 251 (571)
T 3cvr_A 248 ESLS 251 (571)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=142.52 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=62.2
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+++|++|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.+...+ .+
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-------------l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l 108 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-------------LTDIKP-LANLKNLGWLFLDENKVKDLS-SL 108 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-------------CCCCGG-GTTCTTCCEEECCSSCCCCGG-GG
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-------------cCCCcc-cccCCCCCEEECCCCcCCCCh-hh
Confidence 3445555555555554432 4555555555555553 334433 455555555555555544433 35
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
..+++|++|++++|. +..+ +.++.+++|+.|++++|. +..+ ..+..+++|+.|++++|
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS
T ss_pred ccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC
Confidence 555555555555543 2233 245555555555555553 3333 33455555555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=148.52 Aligned_cols=219 Identities=15% Similarity=0.157 Sum_probs=152.9
Q ss_pred CeEEEEEEcCCCCccchhhh--hcCCCCeeEEeeecCCcccchHHHHHHh--cCCCcccEEEeCCCCccc-cC----ccc
Q 038400 177 RVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDDEKISQSFVESCI--SKSQFLRVLNLSESAIEV-CP----RKI 247 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-lp----~~~ 247 (504)
.++++.+.........+... ...+++|+.|.++++... .. .+..+ ..+++|++|++++|.+.. .| ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT--GT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB--SC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec--cc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 35677777665543322221 223467999999877643 11 11223 788999999999999884 22 334
Q ss_pred cCCCCcCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeeccccccc---c--cccCCCCCCccEEeeeCCC
Q 038400 248 GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSL---Q--ESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 248 ~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~---~--~~~~~~l~~L~~L~l~~~~ 321 (504)
..+++|++|++++|. +..+| ..+..+++|++|++++|.+.. . ...+..+++|++|++++|.
T Consensus 142 ~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-------------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TBCSCCCEEEEECCS-------------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hhccCCCEEEeeCCC-------------cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 578999999999886 44443 457789999999999987543 2 2234789999999999975
Q ss_pred Ccccchh----hcCCCCcccEEeeccCCCccccCccCCCC---CCccEEEeccCCCccccccccccCCCCCCCCCCCCCc
Q 038400 322 DLEHLFE----EIDQLRVLRTLSIVCCPRLISLPPAIKYL---SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH 394 (504)
Q Consensus 322 ~l~~~~~----~~~~l~~L~~L~l~~~~~l~~l~~~l~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 394 (504)
++.++. .++.+++|++|++++|......|..+..+ ++|++|++++|..
T Consensus 209 -l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l------------------------ 263 (310)
T 4glp_A 209 -METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL------------------------ 263 (310)
T ss_dssp -CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC------------------------
T ss_pred -CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC------------------------
Confidence 454444 25788999999999987544447767666 6899999988742
Q ss_pred cceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 395 LRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 395 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+.+|..+ +++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus 264 ------------~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 ------------EQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------------CSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ------------Cchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 2333333 267888888877 4666665 6778889999988874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=133.66 Aligned_cols=174 Identities=22% Similarity=0.292 Sum_probs=128.5
Q ss_pred CCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhh
Q 038400 251 KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 251 ~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
.+.+.++++++. +..+|..+. ++++.|++++|.+...++ .+.++++|++|++++|......+..
T Consensus 14 ~~~~~l~~~~~~-------------l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKS-------------LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCC-------------CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCeEEecCCCC-------------ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 356778888764 566665554 578889998887765543 5788889999999887655444556
Q ss_pred cCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLE 408 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 408 (504)
+..+++|++|++++|. ++.++ ..+..+++|++|++++|.. ..
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l------------------------------------~~ 121 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQL------------------------------------KS 121 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC------------------------------------CC
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcC------------------------------------CC
Confidence 7888889999998876 44444 5567888888888887742 22
Q ss_pred chhhhhcCCCCCccEEEeccCCCCCccCc-CCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCCc
Q 038400 409 LPQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~ 479 (504)
++...+ ..+++|+.|+++++ .++.+|. .+..+++|++|++++| .++.++. .+..+++|+.|++++|+-
T Consensus 122 ~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 122 LPSGVF-DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cChhHh-ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 222211 46789999999988 5667765 6899999999999998 5666654 678899999999998763
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-17 Score=158.93 Aligned_cols=241 Identities=14% Similarity=0.087 Sum_probs=168.3
Q ss_pred CeEEEEEEcCCCCccc---hhhhhcCCCCeeEEeeecCCcc-cc------hHHHHHHhcCCCcccEEEeCCCCccc----
Q 038400 177 RVRHLSFAAANASRKD---FSSLLSDLGRVRTIVFSTDDEK-IS------QSFVESCISKSQFLRVLNLSESAIEV---- 242 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~-~~------~~~~~~~~~~~~~L~~L~l~~~~~~~---- 242 (504)
.++.+.+.++.+.... +...+..+++|++|.++++... .. ...+...+..+++|++|+|++|.+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 5688888887664332 3344778999999999876433 11 11223446889999999999999885
Q ss_pred -cCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhcc---------ccCCeeeecccccc--ccc---ccCC
Q 038400 243 -CPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL---------TSLRAFALTTKQKS--LQE---SGIR 307 (504)
Q Consensus 243 -lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l---------~~L~~L~l~~~~~~--~~~---~~~~ 307 (504)
+|..+..+++|++|++++|. ++.. ....++..+..+ ++|++|++++|.+. ..+ ..+.
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~-l~~~-------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNG-LGPQ-------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSC-CHHH-------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEECcCCC-CCHH-------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 77888999999999999985 2211 012344445555 89999999998875 222 3567
Q ss_pred CCCCccEEeeeCCCCcc-----cchhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCCCcccccccc
Q 038400 308 SLGSLRCLTISGCGDLE-----HLFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCESLDLNINME 378 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 378 (504)
.+++|++|++++|.... .++..+..+++|++|++++|... ..+|..+..+++|++|++++|..-..... .
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-A 263 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-H
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-H
Confidence 88999999999985432 23337889999999999998742 66788888999999999999964322000 0
Q ss_pred ccCCCCCCCCCCCCCccceEEEccCCCccc-----chhhhhcCCCCCccEEEeccCCCC
Q 038400 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLE-----LPQWLLQGSTDTLQNLLIIDCPNF 432 (504)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~l 432 (504)
+.. .......++|+.|+++++. +.. +|..+. ..+++|+.|++++|..-
T Consensus 264 l~~----~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 264 VVD----AFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-EKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHH----HHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-HHCTTCCEEECTTSBSC
T ss_pred HHH----HHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-hcCCCceEEEccCCcCC
Confidence 000 0000224689999999974 444 666652 34799999999998543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-16 Score=167.61 Aligned_cols=298 Identities=14% Similarity=0.097 Sum_probs=167.1
Q ss_pred CeEEEEEEcCCCCccc---hhhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCC
Q 038400 177 RVRHLSFAAANASRKD---FSSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKH 252 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 252 (504)
.++.+++..+...... +......+++|++|.++++... .........+.++++|++|++++|.+..+|..+..+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 4556666555432111 3344556677777777655543 33344555666778888888888777777777777777
Q ss_pred cCeeeccCCCCcc---ccCccee-----------ccccccCchhhhccccCCeeeecccccccc--cccCCCCCCccEEe
Q 038400 253 MRYLDLSGNSKIK---KLPKSIY-----------CLELEELPKDIRHLTSLRAFALTTKQKSLQ--ESGIRSLGSLRCLT 316 (504)
Q Consensus 253 L~~L~l~~~~~~~---~lp~~~~-----------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~ 316 (504)
|+.|+++++.... ..+..+. ......+|..+..+++|++|++++|.+... ...+..+++|++|+
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 7777776432111 0111110 112344566677788888888887764322 12256778888888
Q ss_pred eeCCCCcccchhhcCCCCcccEEeecc----------CCCccc--cCccCCCCCCccEEEeccCCCccccc---------
Q 038400 317 ISGCGDLEHLFEEIDQLRVLRTLSIVC----------CPRLIS--LPPAIKYLSSLETLFLYKCESLDLNI--------- 375 (504)
Q Consensus 317 l~~~~~l~~~~~~~~~l~~L~~L~l~~----------~~~l~~--l~~~l~~l~~L~~L~l~~~~~l~~~~--------- 375 (504)
++++.....++.....+++|++|++.+ |..++. ++.....+++|++|+++.+ .+....
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLK 403 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCC
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCC
Confidence 774333333344445667777777773 444431 2222334566666666322 111100
Q ss_pred ---cccccC---CCCCCCC---------CCCCCccceEEEccCCC-cccc-hhhhhcCCCCCccEEEeccCCCCC--ccC
Q 038400 376 ---NMEMEG---EGSNHDR---------KNTRPHLRRVVIGEITQ-LLEL-PQWLLQGSTDTLQNLLIIDCPNFM--ALP 436 (504)
Q Consensus 376 ---~~~~~~---~~~~~~~---------~~~~~~L~~L~l~~~~~-l~~~-~~~~~~~~~~~L~~L~l~~~~~l~--~l~ 436 (504)
.....+ ....... ....++|+.|+++.|.+ +... +..+ ...+++|+.|++++|. ++ .++
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~ 481 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLM 481 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHH
Confidence 000000 0000000 11244778888866543 2221 1122 2346888888888775 43 244
Q ss_pred cCCCCCCCcceEecccCccCCc--CccCCCCCCCcCeEeEeCCC
Q 038400 437 RSLKDLEALETLFILGCPKLSS--LSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 437 ~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|++|++++|+ +.. ++.....+++|+.|++++|.
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 455778999999999997 442 34444578899999999997
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-16 Score=154.71 Aligned_cols=226 Identities=14% Similarity=0.182 Sum_probs=173.6
Q ss_pred CCCcccEEEeCCCCccccCccccCC--CCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc--
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNL--KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-- 301 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-- 301 (504)
....++.++++++.+. |..+..+ .+++.|++++|. +...+..+..+++|++|++++|.+..
T Consensus 45 ~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~-------------l~~~~~~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 45 DESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF-------------MDQPLAEHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE-------------ECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred CchhheeeccccccCC--HHHHHhhhhccceEEEcCCcc-------------ccccchhhccCCCCCEEEccCCCcCHHH
Confidence 3456899999998876 5566666 899999999875 44444456789999999999987653
Q ss_pred ccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc--ccCccCCCCCCccEEEeccCCCccccccccc
Q 038400 302 QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYLSSLETLFLYKCESLDLNINMEM 379 (504)
Q Consensus 302 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 379 (504)
.+..+..+++|++|++++|......+..++.+++|++|++++|..++ .++..+..+++|++|++++|..++...-
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--- 186 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--- 186 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH---
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH---
Confidence 45568899999999999987666778889999999999999996565 4677788899999999999954442100
Q ss_pred cCCCCCCCCCCCCC-ccceEEEccCC-Cc--ccchhhhhcCCCCCccEEEeccCCCCC-ccCcCCCCCCCcceEecccCc
Q 038400 380 EGEGSNHDRKNTRP-HLRRVVIGEIT-QL--LELPQWLLQGSTDTLQNLLIIDCPNFM-ALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 380 ~~~~~~~~~~~~~~-~L~~L~l~~~~-~l--~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~ 454 (504)
.......+ +|+.|++++|. .+ ..++..+ ..+++|+.|++++|..++ ..+..+..+++|++|++++|.
T Consensus 187 ------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 187 ------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 00112345 89999999985 34 3455555 568999999999997554 556678899999999999997
Q ss_pred cCCcC-ccCCCCCCCcCeEeEeCC
Q 038400 455 KLSSL-SEDMHHVTTLKSLTIGGC 477 (504)
Q Consensus 455 ~l~~l-~~~~~~l~~L~~L~l~~c 477 (504)
.+... ...+..+++|+.|++++|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc
Confidence 33321 124668999999999998
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=133.21 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=76.6
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc-ccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-QES 304 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~~ 304 (504)
.+++|++|+++++.+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.. .+.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-------------~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-------------ATNYN-PISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-------------CSCCG-GGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-------------CCcch-hhhcCCCCCEEEeECCccCcccCh
Confidence 3456777777777777666 56677777777777663 33332 45566666666666665543 344
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
.+..+++|++|++++|......|..++.+++|++|++++|..++.+| .+..+++|+.|++++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 56666666666666655444455566666666666666654344444 3555556666665554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=154.55 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=72.3
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+.+|+.|+++++.+..+| .+..+++|+.|+|++|. +..+|. +..+++|++|++++|.+...+ .
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-------------l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-------------LTDIKP-LTNLKNLGWLFLDENKIKDLS-S 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-------------CCCCGG-GGGCTTCCEEECCSSCCCCCT-T
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-------------CCCChh-hccCCCCCEEECcCCCCCCCh-h
Confidence 3455666666666666554 35666666666666654 444443 556666666666666555443 4
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+..+++|+.|++++|. +..+ +.++.+++|+.|+|++|. +..+ ..+..+++|+.|+|++|.
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSC
T ss_pred hccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCc
Confidence 6666666666666653 3333 346666666666666653 3444 345566666666666653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=138.78 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=128.7
Q ss_pred EeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCcc
Q 038400 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLR 313 (504)
Q Consensus 234 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 313 (504)
.+....+... .....+.+|++|++++|. +..+| .+..+++|++|++++|.+...++ +.++++|+
T Consensus 30 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-------------i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~ 93 (291)
T 1h6t_A 30 NLKKKSVTDA-VTQNELNSIDQIIANNSD-------------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLG 93 (291)
T ss_dssp HTTCSCTTSE-ECHHHHHTCCEEECTTSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred HhcCCCcccc-cchhhcCcccEEEccCCC-------------cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCC
Confidence 4555555433 234578899999999885 55665 47889999999999998887765 99999999
Q ss_pred EEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCC
Q 038400 314 CLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRP 393 (504)
Q Consensus 314 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (504)
+|++++|. +..++ .++.+++|++|++++|. +..++ .+..+++|+.|++++|..-.. ......+
T Consensus 94 ~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~ 156 (291)
T 1h6t_A 94 WLFLDENK-VKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-------------TVLSRLT 156 (291)
T ss_dssp EEECCSSC-CCCGG-GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-------------GGGGGCT
T ss_pred EEECCCCc-CCCCh-hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-------------hhhccCC
Confidence 99999965 55554 58999999999999985 55564 578899999999999853321 1111233
Q ss_pred ccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 394 HLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 394 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+|+.|+++++ .+..++. + ..+++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus 157 ~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 157 KLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred CCCEEEccCC-ccccchh-h--cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 6777777664 4444443 3 45667777777666 4555553 6667777777777663
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-16 Score=163.35 Aligned_cols=283 Identities=12% Similarity=0.072 Sum_probs=151.4
Q ss_pred CeEEEEEEcCC-CCccchhhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCcc-----ccCccccC
Q 038400 177 RVRHLSFAAAN-ASRKDFSSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIE-----VCPRKIGN 249 (504)
Q Consensus 177 ~~~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~ 249 (504)
.++.+.+..+. .....+......+++|++|++.++... ....++......++.|++|+++++.++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 35667776554 212233444557788888888766432 112234455667788888888887775 34445567
Q ss_pred CCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc----cccccCCCCCCccEEeeeCCCCccc
Q 038400 250 LKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS----LQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 250 l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
+++|++|++++|. +..+|..+..+++|++|+++..... .....+..+++|+.|+++++ ....
T Consensus 219 ~~~L~~L~L~~~~-------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~ 284 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-------------ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNE 284 (592)
T ss_dssp CTTCCEEECSSCB-------------GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTT
T ss_pred CCCCcEEeccCcc-------------HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhH
Confidence 7888888888764 4556666677777777777632211 11234555666666666553 3344
Q ss_pred chhhcCCCCcccEEeeccCCCcc--ccCccCCCCCCccEEEeccCC-------------CccccccccccC---------
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYLSSLETLFLYKCE-------------SLDLNINMEMEG--------- 381 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~~~-------------~l~~~~~~~~~~--------- 381 (504)
+|..+..+++|++|++++|. +. .++..+..+++|++|+++++. .++.. .+..
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L---~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL---RIERGADEQGMED 360 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE---EEECCCCSSTTSS
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE---EeecCcccccccc
Confidence 55556666667777776665 22 122234556666666665221 11100 0000
Q ss_pred -CCCCC-----CCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEecc---CCCCCccCc------CCCCCCCcc
Q 038400 382 -EGSNH-----DRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIID---CPNFMALPR------SLKDLEALE 446 (504)
Q Consensus 382 -~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~---~~~l~~l~~------~~~~l~~L~ 446 (504)
..... ......++|+.|++. |..++..........+++|+.|++++ |..++..|. .+..+++|+
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred ccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 00000 000113466777763 33443321111112367777777763 445554321 245577888
Q ss_pred eEecccCcc-CCc-CccC-CCCCCCcCeEeEeCCC
Q 038400 447 TLFILGCPK-LSS-LSED-MHHVTTLKSLTIGGCP 478 (504)
Q Consensus 447 ~L~l~~c~~-l~~-l~~~-~~~l~~L~~L~l~~c~ 478 (504)
+|++++|.. +.. .+.. ...+++|+.|++++|.
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 888876653 221 1111 1247788888888876
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=128.18 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=93.4
Q ss_pred hccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEE
Q 038400 284 RHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETL 363 (504)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 363 (504)
..+++|++|++++|.+...+ .+..+++|++|++++| .+..+ ..++.+++|++|++++|......+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45566666666666555444 4666666777777665 33333 356667777777777765444456666777777777
Q ss_pred EeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCC
Q 038400 364 FLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLE 443 (504)
Q Consensus 364 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 443 (504)
++++|.... ..+..+ ..+++|+.|++++|..++.+| .+..++
T Consensus 118 ~Ls~n~i~~-----------------------------------~~~~~l--~~l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 118 DISHSAHDD-----------------------------------SILTKI--NTLPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp ECCSSBCBG-----------------------------------GGHHHH--TTCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred EecCCccCc-----------------------------------HhHHHH--hhCCCCCEEEccCCCCccccH-hhcCCC
Confidence 776653211 123333 456677777777765566665 466777
Q ss_pred CcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 444 ALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 444 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+|++|++++| .++.++ .+..+++|+.|++++++
T Consensus 160 ~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 7777777776 455555 55667777777777665
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=170.08 Aligned_cols=133 Identities=24% Similarity=0.366 Sum_probs=110.4
Q ss_pred cchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhh----hhhc------------cCCchhHHHhhhhCCChhhHh
Q 038400 13 PNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY----LEQK------------ESGILPILRLSYYQLPPHLKQ 76 (504)
Q Consensus 13 ~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~----~~~~------------~~~i~~~L~~sy~~L~~~~k~ 76 (504)
+++.+++++|+++|+|+||||+++|++|+.+. ..|+. +... ...+..++.+||+.|++++|.
T Consensus 304 ~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 381 (1249)
T 3sfz_A 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKD 381 (1249)
T ss_dssp TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHH
T ss_pred hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHH
Confidence 45677899999999999999999999998654 35765 1111 123788999999999999999
Q ss_pred hhhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHH
Q 038400 77 CVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLA 156 (504)
Q Consensus 77 ~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~ 156 (504)
||+|||+||+++.|++..++..|.++ ++.+..++.+|++++|++... .+....|+||+++|+++
T Consensus 382 ~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~----~~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 382 YYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNR----NGKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp HHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEE----SSSSEEEECCHHHHHHH
T ss_pred HHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEec----CCCceEEEecHHHHHHH
Confidence 99999999999999999999999544 356788999999999998654 34456799999999999
Q ss_pred HHHhcCc
Q 038400 157 LLVAKDE 163 (504)
Q Consensus 157 ~~~~~~~ 163 (504)
+....++
T Consensus 446 ~~~~~~~ 452 (1249)
T 3sfz_A 446 TEKNRSQ 452 (1249)
T ss_dssp HHHTGGG
T ss_pred HhhhhHH
Confidence 8887665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-15 Score=153.79 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=141.7
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSL 309 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l 309 (504)
+..+.+..+.+..++ .+..+.+|+.|++++|. +..+| .+..+++|+.|++++|.+...++ +..+
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~-------------i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l 86 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSD-------------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNL 86 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCC-------------CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGC
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCC-------------CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccC
Confidence 444556666665443 25678999999999885 56665 58899999999999998877765 8999
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 389 (504)
++|+.|++++|. +..++ .++.+++|+.|++++|. +..++ .+..+++|+.|++++|..-.. ...
T Consensus 87 ~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-------------~~l 149 (605)
T 1m9s_A 87 KNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-------------TVL 149 (605)
T ss_dssp TTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-------------GGG
T ss_pred CCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-------------hhh
Confidence 999999999974 55554 78999999999999986 55554 488899999999999854321 112
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCcc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPK 455 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 455 (504)
...++|+.|+|+++ .+..++. + ..+++|+.|+|++| .+..+| .+..+++|+.|+|++|+.
T Consensus 150 ~~l~~L~~L~Ls~N-~l~~~~~-l--~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 150 SRLTKLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GSCTTCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred cccCCCCEEECcCC-cCCCchh-h--ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 23457888888886 4555544 4 67788999999887 466665 478888899999988753
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-15 Score=147.69 Aligned_cols=245 Identities=16% Similarity=0.097 Sum_probs=136.0
Q ss_pred hhhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCC-cccEEEeCCCCcccc-CccccCC-----CCcCeeeccCCCCc
Q 038400 193 FSSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQ-FLRVLNLSESAIEVC-PRKIGNL-----KHMRYLDLSGNSKI 264 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~~~ 264 (504)
++......++|+.|+++++... .........+.+++ +|++|++++|.+... +..+..+ ++|++|++++|. +
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 3444555566888888877654 22223335567777 788888888888743 3444443 788888888875 2
Q ss_pred cccCcceeccccccCchhhhcc-ccCCeeeecccccccccc-----cCCC-CCCccEEeeeCCCCcc----cchhhcCCC
Q 038400 265 KKLPKSIYCLELEELPKDIRHL-TSLRAFALTTKQKSLQES-----GIRS-LGSLRCLTISGCGDLE----HLFEEIDQL 333 (504)
Q Consensus 265 ~~lp~~~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~~~~-----~~~~-l~~L~~L~l~~~~~l~----~~~~~~~~l 333 (504)
+..+ ...+...+..+ ++|++|++++|.+...+. .+.. .++|++|++++|.... .++..+..+
T Consensus 93 ~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 93 SYKS-------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp GGSC-------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ChHH-------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 1111 01111123344 788888888887655432 1334 3588888888865432 344555555
Q ss_pred C-cccEEeeccCCCccccC-----ccCCCC-CCccEEEeccCCCccccccccccCCCCCCCCCCC-CCccceEEEccCCC
Q 038400 334 R-VLRTLSIVCCPRLISLP-----PAIKYL-SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNT-RPHLRRVVIGEITQ 405 (504)
Q Consensus 334 ~-~L~~L~l~~~~~l~~l~-----~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 405 (504)
+ +|++|++++|. ++... ..+..+ ++|++|++++|..-..... ........ .++|+.|+++++ .
T Consensus 166 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------~l~~~l~~~~~~L~~L~Ls~N-~ 236 (362)
T 3goz_A 166 PANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------ELAYIFSSIPNHVVSLNLCLN-C 236 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------HHHHHHHHSCTTCCEEECCSS-C
T ss_pred CccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------HHHHHHhcCCCCceEEECcCC-C
Confidence 5 88888888875 33222 233344 4888888888753221000 00000000 135666776664 3
Q ss_pred cccchh-h--hhcCCCCCccEEEeccCC-------CCCccCcCCCCCCCcceEecccCc
Q 038400 406 LLELPQ-W--LLQGSTDTLQNLLIIDCP-------NFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 406 l~~~~~-~--~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+...+. . .....+++|+.|++++|. .+..++..+..+++|+.|+++++.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 333221 0 111455667777776664 122334455666667777776664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-17 Score=168.59 Aligned_cols=206 Identities=18% Similarity=0.179 Sum_probs=143.8
Q ss_pred cCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCccee-ccccccCchhhhccccCCeee-ecccccccc
Q 038400 225 SKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIY-CLELEELPKDIRHLTSLRAFA-LTTKQKSLQ 302 (504)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~~~l~~lp~~i~~l~~L~~L~-l~~~~~~~~ 302 (504)
...++|+.|+|++|.++.+|+.++++++|+.|++++|..+..+|..+. +.....+|..++.+++|+.|+ ++.+.....
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 457889999999999999999999999999999976543334443222 112345567788888888888 444322111
Q ss_pred cc------cCCC--CCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccc
Q 038400 303 ES------GIRS--LGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLN 374 (504)
Q Consensus 303 ~~------~~~~--l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~ 374 (504)
+. .+.. ...|+.|++++| .+..+|. ++.+++|+.|++++|. ++.+|..++.+++|+.|++++|.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~----- 497 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA----- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-----
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-----
Confidence 00 0111 125788888886 4556775 8888888888888875 66888888888888888888763
Q ss_pred ccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCcc--CcCCCCCCCcceEeccc
Q 038400 375 INMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMAL--PRSLKDLEALETLFILG 452 (504)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~ 452 (504)
++.+| .+ ..+++|+.|+|++| .++.+ |..++.+++|+.|++++
T Consensus 498 -------------------------------l~~lp-~l--~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 498 -------------------------------LENVD-GV--ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp -------------------------------CCCCG-GG--TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred -------------------------------CCCCc-cc--CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC
Confidence 22344 34 56788999999887 45665 78888899999999998
Q ss_pred CccCCcCccCCC----CCCCcCeEeE
Q 038400 453 CPKLSSLSEDMH----HVTTLKSLTI 474 (504)
Q Consensus 453 c~~l~~l~~~~~----~l~~L~~L~l 474 (504)
| .++.+|+... .+|+|+.|++
T Consensus 543 N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 543 N-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp S-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-cCCCCccHHHHHHHHCcccCccCC
Confidence 7 4666655433 3688888753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=147.14 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=141.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.+++.|+++++.... + +..+ +++|++|++++|.++.+| ..+++|++|++++|. +..+|
T Consensus 59 ~~L~~L~Ls~n~L~~---l-p~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-------------l~~ip 116 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---L-PDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-------------LSTLP 116 (571)
T ss_dssp TTCSEEECCSSCCSC---C-CSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-------------CSCCC
T ss_pred CCccEEEeCCCCCCc---c-CHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-------------CCCcc
Confidence 478899998776541 1 1112 378999999999999988 568899999999985 55566
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCc
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSL 360 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L 360 (504)
. +.. +|++|++++|.+...+. .+++|+.|++++|. +..+|. .+++|++|++++|. ++.+|. +. ++|
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L 182 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESL 182 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTC
T ss_pred h-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCC
Confidence 5 444 89999999998887665 68999999999965 555775 67899999999985 666888 65 899
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCcc-------ceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHL-------RRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
+.|++++|..-.++ . ... +| +.|+++++ .++.+|.++ ..+++|+.|++++|+...
T Consensus 183 ~~L~Ls~N~L~~lp-------------~-~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 183 EALDVSTNLLESLP-------------A-VPV-RNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CEEECCSSCCSSCC-------------C-CC---------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCH
T ss_pred CEEECcCCCCCchh-------------h-HHH-hhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCC
Confidence 99999998643321 1 111 55 99999985 678899887 458999999999997655
Q ss_pred ccCcCCCCC
Q 038400 434 ALPRSLKDL 442 (504)
Q Consensus 434 ~l~~~~~~l 442 (504)
.+|..+..+
T Consensus 245 ~~p~~l~~l 253 (571)
T 3cvr_A 245 RIRESLSQQ 253 (571)
T ss_dssp HHHHHHHHH
T ss_pred cCHHHHHHh
Confidence 666555443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=123.84 Aligned_cols=122 Identities=30% Similarity=0.395 Sum_probs=70.5
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeeccccccccccc-CCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQESG-IRS 308 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~~ 308 (504)
+.++.+++.++.+|..+ ..+|++|++++|. +..+|.. +..+++|++|++++|.+...+.. +..
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-------------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-------------cCcCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence 44555666666666544 3466667766654 3344332 45666666666666655544332 466
Q ss_pred CCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 309 LGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 309 l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
+++|++|++++|. +..++ ..++.+++|++|++++|. ++.++. .+..+++|++|++++|.
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 6777777776654 33333 335667777777777664 444443 35666777777776653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-14 Score=125.41 Aligned_cols=128 Identities=27% Similarity=0.383 Sum_probs=99.0
Q ss_pred CCcccEEEeCCCCccccCcc-ccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPRK-IGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
.++|++|+++++.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+...++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-------------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-------------cCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 45788999999988877654 6788999999999875 5555544 4788999999999888776654
Q ss_pred c-CCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 305 G-IRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 305 ~-~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
. +.++++|++|++++|. +..++ ..++.+++|++|++++|. ++.++. .+..+++|++|++++|+
T Consensus 94 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 4 6889999999999865 44444 447889999999999985 555554 47788899999888874
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=133.91 Aligned_cols=121 Identities=24% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+...+. +
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-------------i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~ 103 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-------------ISDLSP-LKDLTKLEELSVNRNRLKNLNG-I 103 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------CCCCGG-GTTCSSCCEEECCSSCCSCCTT-C
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-------------cCCChh-hccCCCCCEEECCCCccCCcCc-c
Confidence 344444455444444444 34444444444444443 333333 4444444444444444433322 1
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
.. ++|++|++++|. +..++ .++.+++|+.|++++|. ++.++ .+..+++|+.|++++|
T Consensus 104 ~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS
T ss_pred cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC
Confidence 22 444444444432 22222 34444444444444432 33332 2334444444444443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-15 Score=154.62 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=96.1
Q ss_pred cCCchHHHHHHHhhhcCCC-ChhhhhhhhhccCCchhHHHhhhhCCChhh-HhhhhhhcccCCCCccChHHHHHHHHHcc
Q 038400 26 CGGIPLAVRALGSLLYCST-DEHDWEYLEQKESGILPILRLSYYQLPPHL-KQCVAYCSIFPKDYPFDSFSLVQFWMAHG 103 (504)
Q Consensus 26 c~GlPLal~~ig~~L~~~~-~~~~W~~~~~~~~~i~~~L~~sy~~L~~~~-k~~fl~~a~fp~~~~i~~~~li~~w~~~g 103 (504)
|+|+||||+++|+.|+++. +.++|+.. ....+..+|++||+.|++++ |.||+|||+||+++.|....++.+|+++|
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~--~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC--SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 9999999999999999764 66788764 23568899999999999999 99999999999999999999999998876
Q ss_pred CcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHH
Q 038400 104 LLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLA 156 (504)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~ 156 (504)
++.+..++++|++++|++... ....|+|||++++++
T Consensus 401 -----------eedAe~~L~eLvdRSLLq~d~------~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 -----------KSDVMVVVNKLHKYSLVEKQP------KESTISIPSIYLELK 436 (1221)
T ss_dssp -----------SHHHHHHHHHHHTSSSSSBCS------SSSEEBCCCHHHHHH
T ss_pred -----------HHHHHHHHHHHHhhCCEEEeC------CCCEEEehHHHHHHh
Confidence 124778999999999998631 234799999999866
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-15 Score=156.25 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=59.3
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccc-----cCccccCCC
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEV-----CPRKIGNLK 251 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~~~~l~ 251 (504)
.++++.+..+.+....+......+++|++|.+.++. ............++++|++|++++|.++. ++.....++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 568888888776443333333468899999998653 23344455666688999999999988652 334445778
Q ss_pred CcCeeeccCCC
Q 038400 252 HMRYLDLSGNS 262 (504)
Q Consensus 252 ~L~~L~l~~~~ 262 (504)
+|++|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 89999998874
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.1e-14 Score=129.13 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=130.5
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+..+..++++++.++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++|.+...++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-------------i~~l~-~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-------------IQSLA-GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-------------cccch-HHhhCCCCCEEECCCCccCCChh-
Confidence 3456777788899888777 67889999999999875 66666 67888999999999888877766
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
+.++++|++|++++|. +..+|.. .. ++|+.|++++|. ++.++ .+..+++|+.|++++|.
T Consensus 81 l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~---------------- 139 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK---------------- 139 (263)
T ss_dssp GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC----------------
T ss_pred hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc----------------
Confidence 8889999999999864 5555543 33 889999998874 55665 47788888888888874
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
++.++ .+ ..+++|+.|++++|. ++.+ ..+..+++|+.|++++|+ +...|
T Consensus 140 --------------------i~~~~-~l--~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 140 --------------------LKSIV-ML--GFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp --------------------CCBCG-GG--GGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred --------------------CCCCh-HH--ccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 22222 22 457899999999884 5555 568899999999999985 34334
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-15 Score=158.43 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=147.0
Q ss_pred CeEEEEEEcCCCCc---cchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCC-CccccCccccCCCC
Q 038400 177 RVRHLSFAAANASR---KDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSES-AIEVCPRKIGNLKH 252 (504)
Q Consensus 177 ~~~~l~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~lp~~~~~l~~ 252 (504)
.++.+.+..+.+.. ..+......+++|++|.++.+........+...+.++++|++|++++| .+..+|..+..+++
T Consensus 157 ~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 236 (594)
T 2p1m_B 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236 (594)
T ss_dssp TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTT
T ss_pred CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCc
Confidence 44555555443211 112333345667777777654422333444444555677777777776 34455666666677
Q ss_pred cCeeeccCCCC------ccccCcc------------eeccccccCchhhhccccCCeeeecccccccc--cccCCCCCCc
Q 038400 253 MRYLDLSGNSK------IKKLPKS------------IYCLELEELPKDIRHLTSLRAFALTTKQKSLQ--ESGIRSLGSL 312 (504)
Q Consensus 253 L~~L~l~~~~~------~~~lp~~------------~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L 312 (504)
|+.|+++++.. +..++.. +.......+|..+..+++|++|++++|.+... ...+..+++|
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc
Confidence 77776554421 0001100 00111223444555678888888887763321 1224577888
Q ss_pred cEEeeeCCCCcccchhhcCCCCcccEEeecc--------CCCccc--cCccCCCCCCccEEEeccCCCccccc-------
Q 038400 313 RCLTISGCGDLEHLFEEIDQLRVLRTLSIVC--------CPRLIS--LPPAIKYLSSLETLFLYKCESLDLNI------- 375 (504)
Q Consensus 313 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~--------~~~l~~--l~~~l~~l~~L~~L~l~~~~~l~~~~------- 375 (504)
++|++++|.....++.....+++|++|++.+ |..++. +......+++|+.|.+..+ .+....
T Consensus 317 ~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARN 395 (594)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHH
T ss_pred CEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhh
Confidence 8888887622222222333467777777733 222211 1111112444555533222 111000
Q ss_pred -----ccccc--C---CCCCCC---------CCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC
Q 038400 376 -----NMEME--G---EGSNHD---------RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP 436 (504)
Q Consensus 376 -----~~~~~--~---~~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 436 (504)
..... + ...... .....++|+.|++.+ .+.+.........+++|+.|++++|......+
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 00000 0 000000 011123566666654 33222111111236788888888775322212
Q ss_pred cCC-CCCCCcceEecccCccCCcC-ccCCCCCCCcCeEeEeCCCc
Q 038400 437 RSL-KDLEALETLFILGCPKLSSL-SEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 437 ~~~-~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~ 479 (504)
..+ ..+++|++|++++|+..... ...+..+++|+.|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 222 55899999999999752222 22344689999999999986
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-14 Score=139.92 Aligned_cols=238 Identities=12% Similarity=0.088 Sum_probs=154.2
Q ss_pred CCCeEEEEEEcCCCCccc---hhhhhcCCC-CeeEEeeecCCcccc-hHHHHHHhcCC-CcccEEEeCCCCccccC-cc-
Q 038400 175 PKRVRHLSFAAANASRKD---FSSLLSDLG-RVRTIVFSTDDEKIS-QSFVESCISKS-QFLRVLNLSESAIEVCP-RK- 246 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~---~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~~~lp-~~- 246 (504)
+..++.+++..+.+.... +...+..++ +|+.|+++++..... ...+...+... +.|++|++++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 456889999888764322 225677788 899999998876522 22333344444 99999999999998544 32
Q ss_pred ---ccCC-CCcCeeeccCCCCccccCcceeccccccCchhhhc-cccCCeeeecccccccc-----cccCCCCC-CccEE
Q 038400 247 ---IGNL-KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRH-LTSLRAFALTTKQKSLQ-----ESGIRSLG-SLRCL 315 (504)
Q Consensus 247 ---~~~l-~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~-----~~~~~~l~-~L~~L 315 (504)
+..+ ++|++|++++|. ++..+ ...+...+.. .++|++|++++|.+... +..+..++ +|++|
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKS-------SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSC-------HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHH-------HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 4555 899999999985 22221 1111222334 36999999999887632 23344555 99999
Q ss_pred eeeCCCCcccchh----hcCCC-CcccEEeeccCCCccc-----cCccCCC-CCCccEEEeccCCCccccccccccCCCC
Q 038400 316 TISGCGDLEHLFE----EIDQL-RVLRTLSIVCCPRLIS-----LPPAIKY-LSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 316 ~l~~~~~l~~~~~----~~~~l-~~L~~L~l~~~~~l~~-----l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
++++|......+. .+..+ ++|++|++++|. ++. ++..+.. .++|++|++++|..-..... .
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------~ 244 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE-------N 244 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH-------H
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH-------H
Confidence 9999865444443 34455 599999999986 444 5655555 35999999999864321100 0
Q ss_pred CCCCCCCCCccceEEEccCC--C-----cccchhhhhcCCCCCccEEEeccCC
Q 038400 385 NHDRKNTRPHLRRVVIGEIT--Q-----LLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~--~-----l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
........++|+.|+++++. . +..++..+ ..+++|+.|+++++.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence 00111233479999999874 1 22223333 467788899998885
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-13 Score=118.87 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=37.8
Q ss_pred hhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCcc
Q 038400 283 IRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLE 361 (504)
Q Consensus 283 i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 361 (504)
+..+++|++|++++|.+...++ .+.++++|++|++++|......+..++.+++|++|++++|......|..+..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 3444455555555444433322 344455555555554433222223344455555555554432222234444444444
Q ss_pred EEEeccC
Q 038400 362 TLFLYKC 368 (504)
Q Consensus 362 ~L~l~~~ 368 (504)
.|++++|
T Consensus 133 ~L~L~~N 139 (220)
T 2v70_A 133 LLSLYDN 139 (220)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 4444444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=119.29 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=98.0
Q ss_pred CCCcccEEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc-c
Q 038400 226 KSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-Q 302 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~ 302 (504)
..+.|++|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. .
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------------LISV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------------CCCC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------------CCCh-hhhccCCCCCEEECcCCcCchHH
Confidence 4577888888888887 788777888888888888875 4444 456778888888888887766 4
Q ss_pred cccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----cCCCCCCccEEEeccCCCcc
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----AIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~l~~l~~L~~L~l~~~~~l~ 372 (504)
+..+.++++|++|++++| .+..++ ..++.+++|++|++++|. +..+|. .+..+++|++|++++|...+
T Consensus 88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 444556888888888886 445544 677888888888888874 556665 67788888888888886544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-13 Score=120.09 Aligned_cols=128 Identities=23% Similarity=0.297 Sum_probs=93.8
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
+.|+.|++++|.+..+|. .+..+++|++|++++|. +..+ |..+..+++|++|++++|.+...++.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-------------ISELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-------------CCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-------------CCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 567888888888876664 67778888888888775 4444 55677788888888888777666544
Q ss_pred -CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~ 369 (504)
+.++++|+.|++++|......|..++.+++|++|++++|. ++.++ ..+..+++|+.|++++|+
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 5778888888888866554456677888888888888875 44444 457778888888888775
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=131.14 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=39.6
Q ss_pred ccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCccCCCCCCccE
Q 038400 285 HLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLET 362 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 362 (504)
.+++|++|++++|.+...+ ..+.++++|++|++++|. +..++ ..+..+++|+.|++++|......|..+..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 4455555555555444333 234555555555555543 22222 23455555555555555422222444555555555
Q ss_pred EEeccC
Q 038400 363 LFLYKC 368 (504)
Q Consensus 363 L~l~~~ 368 (504)
|++++|
T Consensus 141 L~L~~N 146 (361)
T 2xot_A 141 LYLSQN 146 (361)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-13 Score=119.51 Aligned_cols=127 Identities=28% Similarity=0.345 Sum_probs=101.0
Q ss_pred CcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
++|++|++++|.+..+ |..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-------------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-------------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-------------CCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 6788899999988866 5678888999999999875 5556543 47888899999998887766544
Q ss_pred -CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~ 369 (504)
+..+++|+.|++++| .+..+|..+..+++|++|++++|. +..++ ..+..+++|+.|++++|+
T Consensus 107 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 678899999999885 466788888889999999999875 55555 457888899999998875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-13 Score=119.18 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=105.1
Q ss_pred CcccEEEeCCCCccccC--ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccc
Q 038400 228 QFLRVLNLSESAIEVCP--RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
..+++|++++|.++.++ ..+..+++|++|++++|. +..++. .+..+++|++|++++|.+...++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------------ITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------------CCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 45789999999998774 347889999999999885 555544 57889999999999888776654
Q ss_pred -cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 305 -GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 305 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
.+.++++|++|++++|......|..++.+++|++|++++|......|..+..+++|+.|++++|+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 48899999999999976655557889999999999999986444447889999999999999885
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=116.11 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=101.2
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccc-cccCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQ-ESGIRS 308 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~-~~~~~~ 308 (504)
+.++++++.++.+|..+. .+|+.|++++|. +..+|. .+..+++|++|++++|.+... +..+.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-------------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-------------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-------------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 678899999999998765 689999999885 555544 577899999999999887765 567899
Q ss_pred CCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCc
Q 038400 309 LGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESL 371 (504)
Q Consensus 309 l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 371 (504)
+++|++|++++|. +..+|.. ++.+++|++|++++|......|..+..+++|+.|++++|..-
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 9999999999964 5566654 688999999999998644444677889999999999988643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=116.50 Aligned_cols=125 Identities=24% Similarity=0.270 Sum_probs=104.0
Q ss_pred cccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccccc-cC
Q 038400 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQES-GI 306 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~ 306 (504)
..+.++.+++.+..+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.+...+. .+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-------------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-------------cCccCHHHhhCccCCcEEECCCCCCCCcChhhc
Confidence 35678899999999998765 899999999986 5555 5567899999999999999877664 46
Q ss_pred CCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 370 (504)
..+++|+.|++++|. +..++ ..++.+++|++|++++|. +..+|..+..+++|+.|++++|..
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC
T ss_pred ccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC
Confidence 899999999999975 44555 457899999999999985 778999999999999999999853
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-13 Score=114.67 Aligned_cols=125 Identities=21% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCcccEEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc-c
Q 038400 226 KSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-Q 302 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~ 302 (504)
..++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. .
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~ 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------------LTSI-ANLPKLNKLKKLELSDNRVSGGL 80 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------------CCCC-TTCCCCTTCCEEECCSSCCCSCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------------CCCc-hhhhcCCCCCEEECCCCcccchH
Confidence 4577888999988887 788888888899999998875 4444 556778888888888888776 5
Q ss_pred cccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----cCCCCCCccEEEec
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----AIKYLSSLETLFLY 366 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~l~~l~~L~~L~l~ 366 (504)
+..+..+++|++|++++|. +..++ ..++.+++|++|++++|. +..+|. .+..+++|+.|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 5555668888888888865 44443 778888888888888874 566654 57778888888765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=113.53 Aligned_cols=124 Identities=20% Similarity=0.191 Sum_probs=102.0
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh--hhccccCCeeeecccccccc-cccCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD--IRHLTSLRAFALTTKQKSLQ-ESGIR 307 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~-~~~~~ 307 (504)
++++++++.++.+|..+.. +|++|++++|. +..++.. +..+++|++|++++|.+... +..+.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-------------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-------------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-------------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-------------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 7889999999999987754 89999999885 5555543 78899999999998887766 56788
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
++++|++|++++|......+..++.+++|++|++++|......|..+..+++|++|++++|+
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999999999976555445568899999999999987555667888999999999999885
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=110.61 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCCcCeeeccCCCCccccCcceeccccc--cCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccc
Q 038400 249 NLKHMRYLDLSGNSKIKKLPKSIYCLELE--ELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL 326 (504)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~lp~~~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 326 (504)
..++|+.|++++|. +. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.....+
T Consensus 22 ~~~~L~~L~l~~n~-------------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCK-------------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCB-------------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCC-------------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHH
Confidence 44678888888775 44 5666667778888888887776655 56777777788877776544446
Q ss_pred hhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccC
Q 038400 327 FEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKC 368 (504)
Q Consensus 327 ~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~ 368 (504)
|..++.+++|++|++++|. ++.+| ..+..+++|+.|++++|
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC
Confidence 6666667777777777763 55544 45666666666666665
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-13 Score=138.20 Aligned_cols=129 Identities=25% Similarity=0.363 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhh----hhc------------cCCchhHHHhhhhCCChhhHhh
Q 038400 14 NLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL----EQK------------ESGILPILRLSYYQLPPHLKQC 77 (504)
Q Consensus 14 ~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~----~~~------------~~~i~~~L~~sy~~L~~~~k~~ 77 (504)
.+.+.+.+|+++|+|+||||+.+|++|+... ..|+.. ... ...+..++..||+.|+++.|.|
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~ 382 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDY 382 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHH
Confidence 3456789999999999999999999998653 357651 111 1246789999999999999999
Q ss_pred hhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHHH
Q 038400 78 VAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLAL 157 (504)
Q Consensus 78 fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~~ 157 (504)
|+++|+||+++.|+...+...|.++ .+.+..++.+|+++++++... .+....|.||+++++++.
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~----~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDR----NGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEE----ETTEEEEECCHHHHHHHH
T ss_pred HHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEec----CCCccEEEEcHHHHHHHH
Confidence 9999999999999999999999533 234677899999999998543 234568999999999998
Q ss_pred HHh
Q 038400 158 LVA 160 (504)
Q Consensus 158 ~~~ 160 (504)
...
T Consensus 447 ~~~ 449 (591)
T 1z6t_A 447 EKN 449 (591)
T ss_dssp HHT
T ss_pred hhh
Confidence 763
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=125.45 Aligned_cols=150 Identities=21% Similarity=0.193 Sum_probs=93.1
Q ss_pred CCeeeecccccccccc-cCC-CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEe
Q 038400 289 LRAFALTTKQKSLQES-GIR-SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFL 365 (504)
Q Consensus 289 L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l 365 (504)
++.|++++|.+...+. .+. ++++|+.|++++|......+..+..+++|++|++++|. +..++ ..+..+++|+.|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEEC
Confidence 4555555555444433 344 89999999999975444334678999999999999986 55555 46889999999999
Q ss_pred ccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCC----CC
Q 038400 366 YKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL----KD 441 (504)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~ 441 (504)
++|....+. |..+ ..+++|+.|+|++| .++.+|... ..
T Consensus 120 ~~N~i~~~~-----------------------------------~~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 120 YNNHIVVVD-----------------------------------RNAF--EDMAQLQKLYLSQN-QISRFPVELIKDGNK 161 (361)
T ss_dssp CSSCCCEEC-----------------------------------TTTT--TTCTTCCEEECCSS-CCCSCCGGGTC----
T ss_pred CCCcccEEC-----------------------------------HHHh--CCcccCCEEECCCC-cCCeeCHHHhcCccc
Confidence 988643221 1122 34456666666655 344555432 45
Q ss_pred CCCcceEecccCccCCcCcc-CCCCCCC--cCeEeEeCCC
Q 038400 442 LEALETLFILGCPKLSSLSE-DMHHVTT--LKSLTIGGCP 478 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~-~~~~l~~--L~~L~l~~c~ 478 (504)
+++|+.|++++| .++.+|. .+..++. |+.|++.++|
T Consensus 162 l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 162 LPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 666666666665 4555542 2334444 3566666654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-12 Score=110.64 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=101.8
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc-ccCCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE-SGIRSL 309 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l 309 (504)
++++++++.++.+|..+. .+|++|++++|. +..+|..+..+++|++|++++|.+...+ ..+.++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-------------i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-------------FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-------------CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-------------CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 678899999998887664 589999999886 6777878889999999999988877665 458899
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
++|++|++++|......+..++.+++|++|++++|. +..+|. .+..+++|+.|++++|+
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 999999999976544445678999999999999985 666665 57889999999999885
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=145.58 Aligned_cols=122 Identities=23% Similarity=0.239 Sum_probs=88.4
Q ss_pred HHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc
Q 038400 219 FVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ 298 (504)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 298 (504)
..+..+..+..|++|+|++|.+..+|..+..+++|++|+|++|. +..+|..+++|++|++|++++|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-------------l~~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-------------LTELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-------------CSCCCGGGGGGTTCCEEECTTSC
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-------------CcccChhhhCCCCCCEEeCcCCc
Confidence 34556777788888888888888888777788888888888775 56777777888888888888887
Q ss_pred cccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccC
Q 038400 299 KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAI 354 (504)
Q Consensus 299 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l 354 (504)
+...|..+++|++|++|++++| .+..+|..++.+++|+.|+|++|.....+|..+
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 7777777788888888888875 456777778888888888888876544555444
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-13 Score=115.17 Aligned_cols=130 Identities=20% Similarity=0.260 Sum_probs=86.0
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCC-CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLK-HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.+...
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-------------l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-------------IRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-------------CCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-------------CCcc-cccccCCCCCEEECCCCccccc
Confidence 3455677777777777776654 33333 77777777764 3333 3456677777777777776665
Q ss_pred cccC-CCCCCccEEeeeCCCCcccchh--hcCCCCcccEEeeccCCCccccCcc----CCCCCCccEEEeccCCC
Q 038400 303 ESGI-RSLGSLRCLTISGCGDLEHLFE--EIDQLRVLRTLSIVCCPRLISLPPA----IKYLSSLETLFLYKCES 370 (504)
Q Consensus 303 ~~~~-~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~----l~~l~~L~~L~l~~~~~ 370 (504)
++.+ ..+++|++|++++|. +..+|. .++.+++|+.|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5444 677777777777753 455665 67777788888887775 5566653 66778888888777653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-13 Score=142.33 Aligned_cols=123 Identities=19% Similarity=0.113 Sum_probs=98.4
Q ss_pred EeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCcc
Q 038400 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLR 313 (504)
Q Consensus 234 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 313 (504)
++..+.+...|..+..+.+|+.|+|++|. +..+|..+..+++|++|++++|.+...|..+++|++|+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQ-------------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLR 273 (727)
T ss_dssp ---------------CCCCCCEEECTTSC-------------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCC
T ss_pred cccccceecChhhhccCCCCcEEECCCCC-------------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCC
Confidence 34445555567788999999999999986 77888888899999999999999888888899999999
Q ss_pred EEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCc
Q 038400 314 CLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESL 371 (504)
Q Consensus 314 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 371 (504)
+|++++|. +..+|..++.+++|++|+|++|. ++.+|..++.+++|+.|+|++|...
T Consensus 274 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 274 VLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 99999975 55889999999999999999984 7899999999999999999998643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-12 Score=129.55 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=62.9
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcC
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEID 331 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 331 (504)
.|++|++++|. +..+|. ++.+++|+.|++++|.+...|..++++++|+.|++++|. +..+| .++
T Consensus 442 ~L~~L~Ls~n~-------------l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKD-------------LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVA 505 (567)
T ss_dssp TCSEEECTTSC-------------CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGT
T ss_pred CceEEEecCCC-------------CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccC
Confidence 36666666654 455554 666666666666666666556666666666666666643 34455 566
Q ss_pred CCCcccEEeeccCCCcccc--CccCCCCCCccEEEeccCC
Q 038400 332 QLRVLRTLSIVCCPRLISL--PPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 332 ~l~~L~~L~l~~~~~l~~l--~~~l~~l~~L~~L~l~~~~ 369 (504)
.+++|+.|++++|. ++.+ |..++.+++|+.|++++|.
T Consensus 506 ~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 506 NLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp TCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 66666666666654 4444 5666666666666666664
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=109.19 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=100.3
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc-
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE- 278 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~- 278 (504)
.++++.|.++++... ....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|. +..
T Consensus 16 ~~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-------------i~~~ 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-------------VSGG 79 (149)
T ss_dssp GGGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-------------CCSC
T ss_pred CccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-------------ccch
Confidence 467888888876543 111233467889999999999999877 778899999999999886 555
Q ss_pred CchhhhccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCcccchh----hcCCCCcccEEeecc
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLFE----EIDQLRVLRTLSIVC 343 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~ 343 (504)
+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|. +..++. .++.+++|+.|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 7777778999999999999887653 678999999999999974 455553 688899999998763
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=107.76 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=104.5
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccc
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL 276 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l 276 (504)
+.++.+|+.|.++++..... +......++|++|++++|.++.+ ..+..+++|++|++++|. +
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-------------l 76 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-------------I 76 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-------------C
T ss_pred cCCcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-------------c
Confidence 45678899999987765522 22223334999999999999987 688999999999999986 6
Q ss_pred ccCchhh-hccccCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccchhh----cCCCCcccEEeeccCC
Q 038400 277 EELPKDI-RHLTSLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHLFEE----IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 277 ~~lp~~i-~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~~~ 345 (504)
..+|..+ ..+++|++|++++|.+...+. .+..+++|+.|++++|. +..+|.. ++.+++|+.|++++|.
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666555 889999999999999877665 78899999999999975 4566664 8899999999999875
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=99.76 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=90.8
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeeccccccccccc-CC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQESG-IR 307 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~ 307 (504)
.+.++++++.+..+|..+. .+|++|++++|. +..+|.. +..+++|++|++++|.+...++. +.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-------------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-------------ccEeCHHHhcCcccccEEECCCCcceEeChhHcc
Confidence 4677888888888776543 688888888875 4455443 46788888888888877665543 57
Q ss_pred CCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCE 369 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~ 369 (504)
.+++|+.|++++|. +..+| ..++.+++|++|++++|. ++.+|.. +..+++|++|++++|+
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 88889999988865 44444 446788899999998874 5566654 5778889999998875
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=102.77 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=89.6
Q ss_pred CcccEEEeCCCCccccCcc--ccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccccc
Q 038400 228 QFLRVLNLSESAIEVCPRK--IGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
..|++|++++|.+..++.. ++.+++|++|++++|. +..+ |..+..+++|++|++++|.+...++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-------------LTGIEPNAFEGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-------------CCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-------------CCCcCHhHcCCcccCCEEECCCCcCCccCH
Confidence 3899999999999988764 8899999999999886 5555 5678899999999999998877654
Q ss_pred -cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC
Q 038400 305 -GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 305 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
.+.++++|++|++++|......|..++.+++|++|++++|.
T Consensus 96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 48899999999999987666668889999999999999986
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.14 E-value=8.8e-13 Score=116.97 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=99.0
Q ss_pred HhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 223 CISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
.+..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.+...
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-------------l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-------------IKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-------------ECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-------------cccccchhhcCCcCCEEECcCCcCCcC
Confidence 5778889999999999988888 88889999999999875 667777777889999999998887776
Q ss_pred cccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----------cCCCCCCccEEE
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----------AIKYLSSLETLF 364 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----------~l~~l~~L~~L~ 364 (504)
+ .+..+++|++|++++|. +..++ ..+..+++|++|++++|......|. .+..+++|+.|+
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5 67888899999998864 44444 3688899999999998863333332 266788888886
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=101.10 Aligned_cols=104 Identities=25% Similarity=0.404 Sum_probs=87.1
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQES-G 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~ 305 (504)
..|++|++++|.++.+|..+..+++|++|++++|. +..++. .+..+++|++|++++|.+...++ .
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-------------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-------------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-------------CCEeCHhHccCCCCCCEEECCCCccCEeCHHH
Confidence 57899999999999999999999999999999885 555553 47889999999999988776654 5
Q ss_pred CCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 345 (504)
+.++++|++|++++|. +..+|. .+..+++|+.|++++|+
T Consensus 98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 8899999999999965 455554 58889999999999886
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=102.60 Aligned_cols=130 Identities=13% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcC-CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISK-SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
+.+++.|.+.+.- ...... .+.. +++|++|||++|.+......-+.++.++++.+..+ .+|.... -..
T Consensus 24 ~~~l~~L~l~g~i---~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF---~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL---NAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAF---SNV 92 (329)
T ss_dssp HHHCSEEEEEEEE---CHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTT---EEE
T ss_pred hCceeEEEEeccc---cHHHHH-HHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHh---ccc
Confidence 4567777777431 111122 2333 78899999998888721111122222344444332 1221110 000
Q ss_pred CchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEe
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLS 340 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 340 (504)
.|.....+++|+.+++.++........|.++++|+.|++..+.....-+..+....++..+.
T Consensus 93 ~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp ETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 11111226666776666633333344566677777777766443222233344444444443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-11 Score=110.06 Aligned_cols=123 Identities=24% Similarity=0.235 Sum_probs=95.9
Q ss_pred ccEEEeCCC--CccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 230 LRVLNLSES--AIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 230 L~~L~l~~~--~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
|+...+.++ .++.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|.+...+..+.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-------------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-------------IEKIS-SLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-------------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-------------Ccccc-ccccCCCCCEEECCCCCcccccchhh
Confidence 344444443 344556688999999999999875 66677 78899999999999998887776677
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc--cCCCCCCccEEEeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP--AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~~~ 369 (504)
.+++|+.|++++| .+..+| .++.+++|++|++++|. +..++. .+..+++|++|++++|.
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 7889999999997 455566 68889999999999885 555443 67888999999998885
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=93.62 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=59.4
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc-CC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG-IR 307 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~-~~ 307 (504)
.++++++++.++.+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.+...++. +.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-------------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-------------CCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 4677888888877777663 677888887765 4444 33455666666666666665544433 35
Q ss_pred CCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 345 (504)
++++|++|++++|. +..+|. .++.+++|++|++++|+
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 56666666665543 333332 35555555555555543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=93.26 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=58.0
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc-CCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG-IRS 308 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~-~~~ 308 (504)
+.++++++.+..+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.+...++. +.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-------------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-------------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 567777777777776654 677777777764 4444 33455666666666666665554433 355
Q ss_pred CCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCC
Q 038400 309 LGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 309 l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 345 (504)
+++|++|++++|. +..+|.. ++.+++|++|++++|+
T Consensus 80 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 80 LTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 6666666665542 3334332 5555555555555553
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=93.08 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=82.8
Q ss_pred CCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
.+.|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-------------IQSLPDGVFDKLTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-------------ceEeChhHccCCCccCEEECCCCCccccCH
Confidence 3678999999999887765 46888999999999875 5555544 5788999999999888776654
Q ss_pred c-CCCCCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCC
Q 038400 305 G-IRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 305 ~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 345 (504)
. +.++++|++|++++|. +..+|.. +..+++|++|++++|+
T Consensus 94 ~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 4 6889999999999864 5556654 5789999999999886
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.88 E-value=8.4e-09 Score=88.59 Aligned_cols=101 Identities=28% Similarity=0.299 Sum_probs=81.6
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchh-h
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFE-E 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~ 329 (504)
..+.++++++. +..+|..+. ++|++|++++|.+... +..+.++++|++|++++|. +..+|. .
T Consensus 10 ~~~~l~~s~n~-------------l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 73 (170)
T 3g39_A 10 SGTTVDCSGKS-------------LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGV 73 (170)
T ss_dssp ETTEEECTTSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT
T ss_pred CCCEEEeCCCC-------------cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhh
Confidence 35788998875 666666553 7899999999988776 5568999999999999975 555654 4
Q ss_pred cCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
++.+++|++|++++|. ++.+|. .+..+++|+.|++++|+
T Consensus 74 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6899999999999985 666665 58899999999999985
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-07 Score=93.18 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=154.5
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceec
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYC 273 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 273 (504)
..|.++ +|+.+.+..+ .. .+....|.+ ..|+.+.+.. .+..++ ..+.++.+|+.+++.+|.
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~---~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~----------- 191 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LK---SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK----------- 191 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CC---EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-----------
T ss_pred hhcccC-CccEEEeCCC-cc---EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-----------
Confidence 345554 6888877643 22 122234555 3688888876 555554 567888999999998764
Q ss_pred cccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCcccc-C
Q 038400 274 LELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISL-P 351 (504)
Q Consensus 274 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~ 351 (504)
+..+|.......+|+.+.+..+........+.++++|+.+++.. .+..+. ..+.+ .+|+.+.+.. .++.+ .
T Consensus 192 --l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~ 264 (401)
T 4fdw_A 192 --ITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIAS 264 (401)
T ss_dssp --CSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECT
T ss_pred --ceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--CccEECh
Confidence 55555554456788888888665555566788899999999876 344444 34444 7888888854 35555 4
Q ss_pred ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCC
Q 038400 352 PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN 431 (504)
Q Consensus 352 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 431 (504)
..+.++++|+.+.+.++..-.... .. ..........+|+.+.+.+ .++.++...+ ..+++|+.+.+.+.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~--~~----I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-- 333 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPE--AM----IHPYCLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-- 333 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTT--CE----ECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT--
T ss_pred hHhhCCCCCCEEEeCCccccCCcc--cE----ECHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc--
Confidence 567888999999887754220000 00 0022333444788888774 4666655442 45688888888553
Q ss_pred CCccC-cCCCCCCCcceEecccCccCCcCc-cCCCCCC-CcCeEeEeC
Q 038400 432 FMALP-RSLKDLEALETLFILGCPKLSSLS-EDMHHVT-TLKSLTIGG 476 (504)
Q Consensus 432 l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~-~L~~L~l~~ 476 (504)
++.+. ..|.++ +|+.+.+.++. +..++ ..+.+++ +++.|++-.
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 56654 457777 89999888874 33333 3455663 677887755
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=87.40 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=81.7
Q ss_pred cCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhh-c
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEE-I 330 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~ 330 (504)
-+.++++++. +..+|..+. ++|++|++++|.+... +..+.++++|+.|++++| .+..+|.. +
T Consensus 14 ~~~l~~~~n~-------------l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 77 (174)
T 2r9u_A 14 QTLVNCQNIR-------------LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVF 77 (174)
T ss_dssp SSEEECCSSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CcEEEeCCCC-------------CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHh
Confidence 3678888774 666666554 7899999999988776 456899999999999996 56667654 5
Q ss_pred CCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCCC
Q 038400 331 DQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCES 370 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~ 370 (504)
+.+++|++|++++|. +..+|.. +..+++|+.|++++|+.
T Consensus 78 ~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 899999999999985 6677764 88999999999999863
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-08 Score=94.39 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred CccceEEEccCCCcccchhhhhcCCCCCcc-EEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 393 PHLRRVVIGEITQLLELPQWLLQGSTDTLQ-NLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 393 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
.+|+.+.+.+ +++.++...+ ..+++|+ .+.+.+ .++.++ ..|.++++|+.+++.++ .++.++. .|.++++|
T Consensus 250 ~~L~~l~l~~--ni~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 250 KYLLKIKLPH--NLKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPS 323 (329)
T ss_dssp TTCCEEECCT--TCCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCC
T ss_pred CCCCEEECCc--ccceehHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcch
Confidence 3555665554 2555554432 5677888 888877 566664 56889999999999775 6777765 67788999
Q ss_pred CeEeE
Q 038400 470 KSLTI 474 (504)
Q Consensus 470 ~~L~l 474 (504)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 98863
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-06 Score=84.56 Aligned_cols=220 Identities=9% Similarity=0.106 Sum_probs=149.6
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
..|.++ +|+.+.+.. ... .+....|.++.+|+.+++.++.++.+|.......+|+.+.+..+
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~---~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~------------- 213 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLE---QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT------------- 213 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCC---EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-------------
T ss_pred HhcCCC-CceEEEeCC-Ccc---EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-------------
Confidence 345554 688888874 222 22234688999999999999999988876656789999999753
Q ss_pred ccccCch-hhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCc----c
Q 038400 275 ELEELPK-DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRL----I 348 (504)
Q Consensus 275 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l----~ 348 (504)
+..++. .+.++++|+.+.+..+........+.+ .+|+.+.+.. .+..+ ...+..+++|+.+.+.++... .
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred -hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 444433 356788999999987654444555666 7899999954 34555 357788999999999875422 1
Q ss_pred cc-CccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEec
Q 038400 349 SL-PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLII 427 (504)
Q Consensus 349 ~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 427 (504)
.+ +..+..|++|+.+.+... ++... ........+|+.+.|.. .++.++...+ ..+ +|+.+.+.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~~--i~~I~----------~~aF~~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~ 353 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPES--IRILG----------QGLLGGNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVE 353 (401)
T ss_dssp EECTTTTTTCTTCCEECCCTT--CCEEC----------TTTTTTCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEEC
T ss_pred EECHHHhhCCccCCeEEeCCc--eEEEh----------hhhhcCCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEc
Confidence 23 356888999999988742 32210 22233345899999865 5666665543 345 89999998
Q ss_pred cCCCCCcc-CcCCCCCC-CcceEecccC
Q 038400 428 DCPNFMAL-PRSLKDLE-ALETLFILGC 453 (504)
Q Consensus 428 ~~~~l~~l-~~~~~~l~-~L~~L~l~~c 453 (504)
++. ...+ +..+.+++ +++.|.+...
T Consensus 354 ~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 354 GTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCC-CcccccccccCCCCCccEEEeCHH
Confidence 874 3333 34566665 6788877653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-08 Score=98.51 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=7.5
Q ss_pred hcCCCCcccEEeeccC
Q 038400 329 EIDQLRVLRTLSIVCC 344 (504)
Q Consensus 329 ~~~~l~~L~~L~l~~~ 344 (504)
.+...++|++|++++|
T Consensus 206 ~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 206 QLDRNRQLQELNVAYN 221 (372)
T ss_dssp HGGGCSCCCEEECCSS
T ss_pred HHhcCCCcCeEECCCC
Confidence 3344444555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=91.76 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=47.0
Q ss_pred hcCCCcccEEEeCC-CCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccc
Q 038400 224 ISKSQFLRVLNLSE-SAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 224 ~~~~~~L~~L~l~~-~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 300 (504)
+..+.+|++|+|++ |.+..+| ..++.|.+|++|+|++|. +..+|. .+.+|++|++|+|++|.+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-------------l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-------------LRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-------------CCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-------------cceeCHHHhcCCcCCCEEeCCCCccc
Confidence 55566666666664 6666555 346666666666666654 333332 3456666666666666655
Q ss_pred cccccCCCCCCccEEeeeCC
Q 038400 301 LQESGIRSLGSLRCLTISGC 320 (504)
Q Consensus 301 ~~~~~~~~l~~L~~L~l~~~ 320 (504)
..++.+.....|+.|++.+|
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSS
T ss_pred eeCHHHcccCCceEEEeeCC
Confidence 55443333333666666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=90.00 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=68.8
Q ss_pred EEEeCCC-CccccCccccCCCCcCeeeccC-CCCccccCcceeccccccCc-hhhhccccCCeeeecccccccccc-cCC
Q 038400 232 VLNLSES-AIEVCPRKIGNLKHMRYLDLSG-NSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQES-GIR 307 (504)
Q Consensus 232 ~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~-~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~-~~~ 307 (504)
.++.+++ .++.+|. +..+.+|++|+|++ |. +..+| ..+..|++|++|++++|.+...++ .|.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-------------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-------------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-------------CCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence 4577777 7888888 88888888888885 54 55554 346778888888888777666543 467
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
+|++|+.|+|++| .+..+|..+.....|+.|++.+|.
T Consensus 78 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 78 FTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCCC
Confidence 7888888888775 345555443333337788877765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-08 Score=98.08 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCc-----cCcCCCCCCCcceEecccCc
Q 038400 392 RPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMA-----LPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~ 454 (504)
+++|+.|.+.+|......+. +.....+++|+.|+|+.| .+.. ++..+..+++|+.|++++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 34566666655432221211 121235688999999765 3443 34444567889999998874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-08 Score=93.95 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=109.7
Q ss_pred CeEEEEEEcCCCCccc---hhhhhc-CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-----Cccc
Q 038400 177 RVRHLSFAAANASRKD---FSSLLS-DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-----PRKI 247 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~---~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----p~~~ 247 (504)
.++.+++..+.+.... +...+. ...+|+.|+++++... ..........+.+|+.|+|++|.++.. ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4677888777764332 222333 3379999999987643 333344444566899999999998732 2223
Q ss_pred -cCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-----cccCCCCCCccEEeeeCCC
Q 038400 248 -GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-----ESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 248 -~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~ 321 (504)
....+|++|++++|. ++. .....++..+..+++|++|++++|.+... ...+...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~-------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTA-------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHH-------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC-CCh-------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 356889999999985 321 11344666677889999999999886543 3446777899999999986
Q ss_pred Ccc----cchhhcCCCCcccEEeeccCC
Q 038400 322 DLE----HLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 322 ~l~----~~~~~~~~l~~L~~L~l~~~~ 345 (504)
.-. .++..+...++|++|++++|.
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 433 344556667889999999986
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=90.26 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred CchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcC--CCCcccEEeec
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEID--QLRVLRTLSIV 342 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L~l~ 342 (504)
++..+..+++|+.|+++++.....++ + .+++|++|++..|.........+. .+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 33444555666666665542111111 2 255666666655442222222222 45555555553
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0001 Score=72.12 Aligned_cols=217 Identities=12% Similarity=0.074 Sum_probs=123.9
Q ss_pred HHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc
Q 038400 222 SCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL 301 (504)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 301 (504)
..|.++.+|+.+.+.++...--...+.++.+|+.+.+..+ ++.++. ..+.++..|+.+.+..+....
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~-----------~~F~~~~~L~~i~~~~~~~~i 222 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRD-----------YCFAECILLENMEFPNSLYYL 222 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECT-----------TTTTTCTTCCBCCCCTTCCEE
T ss_pred hhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCc-----------hhhccccccceeecCCCceEe
Confidence 3577888888888876543322345677888888887653 222221 124456666666665443322
Q ss_pred ccccCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccccc
Q 038400 302 QESGIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEME 380 (504)
Q Consensus 302 ~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 380 (504)
. ......++|+.+.+... ...+ ...+..+.+|+.+.+..+. ..--...+..+..++.+...... +.
T Consensus 223 ~-~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~------ 289 (394)
T 4fs7_A 223 G-DFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VP------ 289 (394)
T ss_dssp C-TTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---EC------
T ss_pred e-hhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---ec------
Confidence 2 23344566777766542 2222 2345566777777775531 22223345566666666554321 00
Q ss_pred CCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcC
Q 038400 381 GEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSL 459 (504)
Q Consensus 381 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l 459 (504)
........+|+.+.+.+ +++.++...+ ..+.+|+.+++.+ .++.+. ..|.++.+|+.+.+... ++.+
T Consensus 290 -----~~~F~~~~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 290 -----EKTFYGCSSLTEVKLLD--SVKFIGEEAF-ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp -----TTTTTTCTTCCEEEECT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred -----ccccccccccccccccc--ccceechhhh-cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEe
Confidence 11223334677777654 4555554432 4567888888754 356664 45778888888888653 6666
Q ss_pred cc-CCCCCCCcCeEeEeC
Q 038400 460 SE-DMHHVTTLKSLTIGG 476 (504)
Q Consensus 460 ~~-~~~~l~~L~~L~l~~ 476 (504)
+. .|.++++|+.+++..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 54 567888888888854
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-06 Score=72.30 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHhcCCCcccEEEeCCC-Ccc-----ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeee
Q 038400 220 VESCISKSQFLRVLNLSES-AIE-----VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFA 293 (504)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~ 293 (504)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|. ++ ......+...+...+.|++|+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~-------~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SN-------DPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CC-------HHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CC-------hHHHHHHHHHHHhCCCcCEEE
Confidence 3344555556666666665 543 233344455556666666553 11 011122333344445555555
Q ss_pred ecccccccc-----cccCCCCCCccEEee
Q 038400 294 LTTKQKSLQ-----ESGIRSLGSLRCLTI 317 (504)
Q Consensus 294 l~~~~~~~~-----~~~~~~l~~L~~L~l 317 (504)
+++|.+... ...+...++|++|++
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 555544321 123344445555555
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.97 E-value=5.1e-06 Score=70.46 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=33.9
Q ss_pred CCCCCCccEEeeeCCCCcccc-hhhcCCC----CcccEEeeccCCCcccc-CccCCCCCCccEEEeccCCCc
Q 038400 306 IRSLGSLRCLTISGCGDLEHL-FEEIDQL----RVLRTLSIVCCPRLISL-PPAIKYLSSLETLFLYKCESL 371 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~l----~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l 371 (504)
+.++++|++|++++|..++.- ...++.+ ++|++|+|++|..++.- -..+..+++|++|++++|+.+
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 345666666666666544431 1233332 25666666666554421 012344566666666666544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.90 E-value=6.6e-06 Score=69.77 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=18.1
Q ss_pred CcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCCchhh
Q 038400 444 ALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 444 ~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~ 482 (504)
+|++|+|++|+.++.-. ..+..+++|+.|++++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 45555555555444311 1123455555555555555443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=9.7e-06 Score=70.28 Aligned_cols=121 Identities=7% Similarity=0.085 Sum_probs=80.9
Q ss_pred hhhhhcCCCCeeEEeeecC-Cccc-chHHHHHHhcCCCcccEEEeCCCCcc-----ccCccccCCCCcCeeeccCCCCcc
Q 038400 193 FSSLLSDLGRVRTIVFSTD-DEKI-SQSFVESCISKSQFLRVLNLSESAIE-----VCPRKIGNLKHMRYLDLSGNSKIK 265 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~ 265 (504)
+...+...+.|+.|.++++ .++. ....+...+...+.|++|+|++|.+. .+...+...++|++|++++|. ++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4556777889999999876 6542 12334455677889999999999886 244556667889999999884 22
Q ss_pred ccCcceeccccccCchhhhccccCCeeee--cccccccc-----cccCCCCCCccEEeeeCCC
Q 038400 266 KLPKSIYCLELEELPKDIRHLTSLRAFAL--TTKQKSLQ-----ESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 266 ~lp~~~~~~~l~~lp~~i~~l~~L~~L~l--~~~~~~~~-----~~~~~~l~~L~~L~l~~~~ 321 (504)
......+...+...+.|++|++ ++|.+... ...+...++|++|++++|.
T Consensus 107 -------~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 -------GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -------HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -------HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1123345666777888999999 66765432 1233444667777776653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00066 Score=66.37 Aligned_cols=192 Identities=12% Similarity=0.164 Sum_probs=118.0
Q ss_pred ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCc
Q 038400 245 RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDL 323 (504)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 323 (504)
..+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+........+.++..|+.+.+... .
T Consensus 156 ~aF~~c~~L~~i~l~~~--------------~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~--~ 219 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS--------------METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNS--L 219 (394)
T ss_dssp TTTTTCTTCCEEECCTT--------------CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTT--C
T ss_pred hhhcccCCCcEEecCCc--------------cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCC--c
Confidence 45777888888888753 333333 355778888888876655555566788888888877653 2
Q ss_pred ccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEcc
Q 038400 324 EHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGE 402 (504)
Q Consensus 324 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 402 (504)
..+........+|+.+.+... ...+. ..+..+.+|+.+.+..+.. .+. .........++.+.+..
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-~i~-----------~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL-RIG-----------GSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-EEC-----------SCTTTTCTTCCEEEECS
T ss_pred eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc-eee-----------ccccccccccceeccCc
Confidence 233333444577888877542 33333 3466778888888765421 110 11222233555555443
Q ss_pred CCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEe
Q 038400 403 ITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIG 475 (504)
Q Consensus 403 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~ 475 (504)
. .++...+ ..+.+|+.+.+.+ .++.++ ..+.++.+|+.+.|.. .++.++. .|.++.+|+.+.+.
T Consensus 286 ~----~i~~~~F-~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 286 V----IVPEKTF-YGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp S----EECTTTT-TTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred e----eeccccc-ccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 1 1222221 4567888888865 366664 3477889999999864 3666653 57788888888774
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0013 Score=64.34 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=56.0
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
..+|+.+.+.. .++.++...+ ..+.+|+.+.+.+ .++.+. ..|.++.+|+.+.|.. .++.++. .|.++++|
T Consensus 287 c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 287 CPALQDIEFSS--RITELPESVF-AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred ccccccccCCC--cccccCceee-cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 34677777653 5666665543 4567888888864 366664 4578889999999964 4666654 57889999
Q ss_pred CeEeEeCCC
Q 038400 470 KSLTIGGCP 478 (504)
Q Consensus 470 ~~L~l~~c~ 478 (504)
+.+++.+..
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 999998753
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.67 E-value=9.2e-06 Score=74.26 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=8.8
Q ss_pred hhhccccCCeeeecccccc
Q 038400 282 DIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 282 ~i~~l~~L~~L~l~~~~~~ 300 (504)
.+..+++|+.|++++|.+.
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HHHHSTTCCEEECTTSCCC
T ss_pred HHhhCCCCCEEECCCCccC
Confidence 3344445555555444433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.7e-05 Score=72.44 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=46.0
Q ss_pred HHHhcCCCcccEEEeCCCCcccc---CccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccc--cCCeeeec
Q 038400 221 ESCISKSQFLRVLNLSESAIEVC---PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLT--SLRAFALT 295 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~--~L~~L~l~ 295 (504)
.....+++.|+.|+|++|.+..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|+++
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-------------i~~~-~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-------------LKSE-RELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-------------CCSG-GGGGGGTTSCCSEEECT
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-------------cCCc-hhhhhcccCCcceEEcc
Confidence 33446789999999999999854 4567789999999999985 3333 2233333 66666666
Q ss_pred ccccc
Q 038400 296 TKQKS 300 (504)
Q Consensus 296 ~~~~~ 300 (504)
+|.+.
T Consensus 229 ~Npl~ 233 (267)
T 3rw6_A 229 GNSLC 233 (267)
T ss_dssp TSTTG
T ss_pred CCcCc
Confidence 65543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.012 Score=56.88 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
..+|+.+.+.. .+..++...+ ..+++|+.+.+.++ .++.++ ..+.++.+|+.+.|.. .++.++. .|.++.+|
T Consensus 262 ~~~l~~i~l~~--~i~~i~~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 262 CTALKTLNFYA--KVKTVPYLLC-SGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp CTTCCEEEECC--CCSEECTTTT-TTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred eehhccccccc--cceecccccc-cccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCC
Confidence 33677777654 4555554432 46678888888654 355554 4577888888888864 3666654 46778888
Q ss_pred CeEeEe
Q 038400 470 KSLTIG 475 (504)
Q Consensus 470 ~~L~l~ 475 (504)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 887774
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.011 Score=57.54 Aligned_cols=272 Identities=9% Similarity=0.134 Sum_probs=130.8
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~ 255 (504)
.++.+.+...-. ..-...|.+|.+|+.+.+..+.......+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~svt--~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDTVT--EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTTCC--EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCCee--EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 356666654322 112466888899999887643211111122334566666666555433 23232 34556666666
Q ss_pred eeccCCCCccccCccee--cc---------ccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCC--
Q 038400 256 LDLSGNSKIKKLPKSIY--CL---------ELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGD-- 322 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~--~~---------~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-- 322 (504)
+.+... +..++.... |. .+..+....-...+|+.+.+..+........+..+.+|..........
T Consensus 142 i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 142 VTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccccce--eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 666431 222221110 11 122222222223455555555443333333445555555443322100
Q ss_pred ------------------------cc--cch--------hhcCCCCcccEEeeccCCCcccc-CccCCCCCCccEEEecc
Q 038400 323 ------------------------LE--HLF--------EEIDQLRVLRTLSIVCCPRLISL-PPAIKYLSSLETLFLYK 367 (504)
Q Consensus 323 ------------------------l~--~~~--------~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~ 367 (504)
.. .+| ..+..+.+|+.+.+... ...+ ...+.++++|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc--cceecCcccccccccccccCCC
Confidence 00 011 12334455555555331 1222 22345556666665532
Q ss_pred CCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcc
Q 038400 368 CESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALE 446 (504)
Q Consensus 368 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~ 446 (504)
. ++.. .........+|+.+.|.+ +++.+....+ ..+.+|+.+.+.+ .++.+. ..|.++++|+
T Consensus 298 ~--i~~I----------~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 298 R--ITEL----------PESVFAGCISLKSIDIPE--GITQILDDAF-AGCEQLERIAIPS--SVTKIPESAFSNCTALN 360 (394)
T ss_dssp T--CCEE----------CTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEEECT--TCCBCCGGGGTTCTTCC
T ss_pred c--cccc----------CceeecCCCCcCEEEeCC--cccEehHhHh-hCCCCCCEEEECc--ccCEEhHhHhhCCCCCC
Confidence 1 1111 022233345888888865 5666655432 5678999999964 366665 4588999999
Q ss_pred eEecccCccCCcCccCCCCCCCcCeEeEe
Q 038400 447 TLFILGCPKLSSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 447 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 475 (504)
.+.+.+... .+ ..+..+.+|+.+.+.
T Consensus 361 ~i~~~~~~~--~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 361 NIEYSGSRS--QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEESSCHH--HH-HTCBCCCCC------
T ss_pred EEEECCcee--eh-hhhhccCCCCEEEeC
Confidence 999987532 11 345566777777664
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.1 Score=50.28 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=54.0
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCc-CCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
...|+.+.+.. .++.+....+ ..+.+|+.+.+.. .++.++. .+..+++|+.+.+.++ .++.++. .|.++.+|
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF-~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLL-QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKL 312 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTT-TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTC
T ss_pred CccceEEEcCC--CccEeCcccc-ceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCC
Confidence 34677777754 3555544432 4567888888864 3566654 4788999999999764 5666654 57788999
Q ss_pred CeEeEe
Q 038400 470 KSLTIG 475 (504)
Q Consensus 470 ~~L~l~ 475 (504)
+.+.+.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 999884
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.04 Score=47.38 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=18.0
Q ss_pred hhhccccCCeeeeccccccccc-----ccCCCCCCccEEeeeCC
Q 038400 282 DIRHLTSLRAFALTTKQKSLQE-----SGIRSLGSLRCLTISGC 320 (504)
Q Consensus 282 ~i~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~ 320 (504)
.+..-+.|++|++++|.+.... ..+..=+.|++|+++++
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3334455555555555543221 12333344666666543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.14 Score=40.85 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=27.9
Q ss_pred EEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccc
Q 038400 232 VLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQ 298 (504)
Q Consensus 232 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 298 (504)
+++.++..++ .+|..+. .+|++|+|++|. +..||.+ +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-------------l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-------------LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-------------CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-------------CCccChhhhhhccccCEEEecCCC
Confidence 5566666666 6665432 356667776664 4444433 3345555555555443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.081 Score=45.45 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=58.5
Q ss_pred hhhhhcCCCCeeEEeeecC-Cccc-chHHHHHHhcCCCcccEEEeCCCCcc-----ccCccccCCCCcCeeeccCCCCcc
Q 038400 193 FSSLLSDLGRVRTIVFSTD-DEKI-SQSFVESCISKSQFLRVLNLSESAIE-----VCPRKIGNLKHMRYLDLSGNSKIK 265 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~ 265 (504)
+.......+.|+.|.++++ .++. ....+...+..-..|+.|+|++|.+. .+-+.+..=..|+.|+|++|. ++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 3445556677888888753 4431 12234455666778888888888876 333445555678888888774 22
Q ss_pred ccCcceeccccccCchhhhccccCCeeeeccc
Q 038400 266 KLPKSIYCLELEELPKDIRHLTSLRAFALTTK 297 (504)
Q Consensus 266 ~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~ 297 (504)
......|-+.+..-+.|++|+++++
T Consensus 112 -------~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 -------PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -------HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -------HHHHHHHHHHHhhCCceeEEECCCC
Confidence 1112333344445566888888754
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.28 Score=39.01 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.7
Q ss_pred CcccEEEeCCCCccccCcc-ccCCCCcCeeeccCCC
Q 038400 228 QFLRVLNLSESAIEVCPRK-IGNLKHMRYLDLSGNS 262 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 262 (504)
.+|+.|+|++|.++.+|.. +..+.+|++|+|++|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4699999999999998864 6789999999999985
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=81.31 E-value=5.6 Score=37.08 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhhhccCCchhHHHhhhhCC---ChhhHhhhhhhcccCCCCccChH
Q 038400 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKESGILPILRLSYYQL---PPHLKQCVAYCSIFPKDYPFDSF 93 (504)
Q Consensus 17 ~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~~~~~~i~~~L~~sy~~L---~~~~k~~fl~~a~fp~~~~i~~~ 93 (504)
+.+.+|++.|+|.|+++..++..+....+. |.......+.+...+.-.+..+ ++..+.++..+|+ + ..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~ 299 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDF--GRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWS 299 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccH--hHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHH
Confidence 466789999999999999998765422222 2211111111111121122222 6788999998887 2 23444
Q ss_pred HHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeee
Q 038400 94 SLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDL 134 (504)
Q Consensus 94 ~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 134 (504)
.+........ +... ......+++.|.+.+++...
T Consensus 300 ~l~~~~~~~~------~~~~-~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 300 LIRDYLAVKG------TKIP-EPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHTT------CCCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh------CCCC-HHHHHHHHHHHHhCCCEEec
Confidence 5444432211 0011 23456789999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 504 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 2e-13 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 68.3 bits (166), Expect = 2e-13
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKES---- 57
+ + + ++ G P + T E + + ES
Sbjct: 196 AYGMPMPVGEKEE--DVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLV 253
Query: 58 GILPILRLSYYQLPPHLKQCVAY 80
G+ I SY L L++CV
Sbjct: 254 GVECITPYSYKSLAMALQRCVEV 276
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 37/271 (13%), Positives = 78/271 (28%), Gaps = 26/271 (9%)
Query: 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL 286
SQ + S ++ + + ++++DLS + +E+ L +
Sbjct: 22 SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----------IEVSTLHGILSQC 70
Query: 287 TSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPR 346
+ L+ L+ + L + + +L L E Q + +
Sbjct: 71 SKLQ--NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128
Query: 347 LISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQL 406
K++ L+L+ + + P+L + + + L
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188
Query: 407 LELPQWLLQGSTDTLQNLLIIDCPNFM-ALPRSLKDLEALETLFILGCPKLSSLSEDMHH 465
LQ+L + C + + L ++ L+TL + G +L
Sbjct: 189 KNDCFQEFFQLNY-LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL---- 243
Query: 466 VTTLKSLTIGGCPALSERCKRPTGEDWPKIA 496
P L C T P I
Sbjct: 244 -------LKEALPHLQINCSHFTTIARPTIG 267
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.001
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE--------LEELPK 281
L LN+S + + P L+ L S N + ++P+ L+ L E P
Sbjct: 286 LEELNVSNNKLIELPALPPRLER---LIASFN-HLAEVPELPQNLKQLHVEYNPLREFPD 341
Query: 282 DIRHLTSLR 290
+ LR
Sbjct: 342 IPESVEDLR 350
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.78 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.77 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.76 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.72 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.7 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.69 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.69 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.59 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.54 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.47 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.45 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.36 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.33 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.32 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.19 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.17 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.12 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.07 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.97 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.95 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.87 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.8 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.71 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.69 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.63 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.58 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.54 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.44 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.93 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.69 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.58 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.04 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.78 E-value=3.7e-19 Score=168.24 Aligned_cols=251 Identities=15% Similarity=0.155 Sum_probs=149.7
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCC-CCcc-ccCccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSE-SAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++.|++.++...... .++..+.++++|++|+|++ |.+. .+|..++++++|++|++++|. +..+
T Consensus 51 ~v~~L~L~~~~l~g~~-~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-------------l~~~ 116 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-------------VSGA 116 (313)
T ss_dssp CEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-------------CEEE
T ss_pred EEEEEECCCCCCCCCC-CCChHHhcCccccccccccccccccccccccccccccchhhhcccc-------------cccc
Confidence 4666666655432111 1223466667777777765 4554 566667777777777776654 2222
Q ss_pred -chhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcccchhhcCCCCcc-cEEeeccCCCccccCccCCC
Q 038400 280 -PKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVL-RTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 -p~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L-~~L~l~~~~~l~~l~~~l~~ 356 (504)
|..+..+.+|++++++.|... ..|..+.++++|+.+++++|.....+|..++.+.++ +.+.+.+|......|..+..
T Consensus 117 ~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~ 196 (313)
T d1ogqa_ 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred ccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence 233556666666666655433 234556666667777766665555666666666554 55666655433344444444
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP 436 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 436 (504)
+.. ..+++..+...... ........+++.+.+.++. +...+..+ ..+++|+.|++++|.....+|
T Consensus 197 l~~-~~l~l~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~-l~~~~~~~--~~~~~L~~L~Ls~N~l~g~iP 261 (313)
T d1ogqa_ 197 LNL-AFVDLSRNMLEGDA-----------SVLFGSDKNTQKIHLAKNS-LAFDLGKV--GLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp CCC-SEEECCSSEEEECC-----------GGGCCTTSCCSEEECCSSE-ECCBGGGC--CCCTTCCEEECCSSCCEECCC
T ss_pred ccc-cccccccccccccc-----------ccccccccccccccccccc-cccccccc--ccccccccccCccCeecccCC
Confidence 433 34555544322110 1112233477888887754 33333344 567888999998885444788
Q ss_pred cCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCchhh
Q 038400 437 RSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 437 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 482 (504)
.+++.+++|++|++++|.....+|. +.++++|+.+++.+++.+..
T Consensus 262 ~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred hHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence 8888899999999988754336774 56788888888888876543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=9.5e-18 Score=154.33 Aligned_cols=196 Identities=23% Similarity=0.227 Sum_probs=124.2
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
...+...+.++++++.+|+.+. ++|++|+|++|. +..+|. .+.++++|++|++++|.+...+ .
T Consensus 9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~-------------i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~ 72 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-------------LYTFSLATLMPYTRLTQLNLDRAELTKLQ-V 72 (266)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-------------CSEEEGGGGTTCTTCCEEECTTSCCCEEE-C
T ss_pred cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCc-------------CCCcCHHHhhccccccccccccccccccc-c
Confidence 3445555777777887877664 578888888775 555553 4667778888888777766554 3
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
++.+++|++|++++| .+...+..+..+++|+.|++++|......+..+..+.+++.|.+++|...
T Consensus 73 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-------------- 137 (266)
T d1p9ag_ 73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------- 137 (266)
T ss_dssp CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC--------------
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccceeeccccccccccccccccccccc--------------
Confidence 567777888887775 35555666777777777777776544444455566777777777766322
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCccCCC
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSEDMH 464 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 464 (504)
.+|.... ..+++|+.|+++++ .++.++ ..+..+++|++|+|++| .++.+|.++.
T Consensus 138 ----------------------~l~~~~~-~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~ 192 (266)
T d1p9ag_ 138 ----------------------TLPPGLL-TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192 (266)
T ss_dssp ----------------------CCCTTTT-TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ----------------------eeccccc-cccccchhcccccc-cccccCccccccccccceeecccC-CCcccChhHC
Confidence 2221111 33456666666665 344443 34566667777777665 4666666666
Q ss_pred CCCCcCeEeEeCCC
Q 038400 465 HVTTLKSLTIGGCP 478 (504)
Q Consensus 465 ~l~~L~~L~l~~c~ 478 (504)
.+++|+.|+++++|
T Consensus 193 ~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 193 GSHLLPFAFLHGNP 206 (266)
T ss_dssp TTCCCSEEECCSCC
T ss_pred CCCCCCEEEecCCC
Confidence 66667777776654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.76 E-value=1.3e-18 Score=164.43 Aligned_cols=255 Identities=16% Similarity=0.120 Sum_probs=196.2
Q ss_pred CCCeEEEEEEcCCCCcc-chhhhhcCCCCeeEEeeec-CCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCC
Q 038400 175 PKRVRHLSFAAANASRK-DFSSLLSDLGRVRTIVFST-DDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLK 251 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~ 251 (504)
..+++.+++.+...... .++..+.++++|++|++++ +... +. ++..+.++++|++|++++|.+..+ |..+..+.
T Consensus 49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~--g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~ 125 (313)
T d1ogqa_ 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--GP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE--SC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc--cc-cccccccccccchhhhccccccccccccccchh
Confidence 34789999998877543 4578899999999999985 3322 12 345688999999999999999854 56688999
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc-cccccCCCCCCc-cEEeeeCCCCcccchhh
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSL-RCLTISGCGDLEHLFEE 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L-~~L~l~~~~~l~~~~~~ 329 (504)
+|+++++++|.. ...+|..+.++++|+++++++|... ..|..+..+..+ +.+++++|......|..
T Consensus 126 ~L~~l~l~~N~~------------~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~ 193 (313)
T d1ogqa_ 126 TLVTLDFSYNAL------------SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp TCCEEECCSSEE------------ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred hhcccccccccc------------cccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc
Confidence 999999998752 3456778899999999999988765 456667777776 78888887655566777
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
++.+..+ .+++..+.....+|..++.+++|+.+++++|..... .......++|+.|+++++.-...+
T Consensus 194 ~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~------------~~~~~~~~~L~~L~Ls~N~l~g~i 260 (313)
T d1ogqa_ 194 FANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD------------LGKVGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp GGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB------------GGGCCCCTTCCEEECCSSCCEECC
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccc------------ccccccccccccccCccCeecccC
Confidence 7777655 688888777777888899999999999998853221 111223458999999987544489
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
|.++ ..+++|++|+|++|.-...+|. ++.+++|+.+++.+++.+...|
T Consensus 261 P~~l--~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 261 PQGL--TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CGGG--GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred ChHH--hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence 9988 7889999999999853337885 6889999999999997666543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=4.7e-17 Score=158.10 Aligned_cols=180 Identities=19% Similarity=0.158 Sum_probs=129.4
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
.++.+.+.++.+. .+ ..+..+++|++|+++++...... .+.++++|++|++++|.+..++. ++++++|+.|
T Consensus 45 ~l~~L~l~~~~I~--~l-~gl~~L~nL~~L~Ls~N~l~~l~-----~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L 115 (384)
T d2omza2 45 QVTTLQADRLGIK--SI-DGVEYLNNLTQINFSNNQLTDIT-----PLKNLTKLVDILMNNNQIADITP-LANLTNLTGL 115 (384)
T ss_dssp TCCEEECCSSCCC--CC-TTGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred CCCEEECCCCCCC--Cc-cccccCCCCCEEeCcCCcCCCCc-----cccCCcccccccccccccccccc-cccccccccc
Confidence 5678888777663 22 34667899999999988755221 28899999999999999987764 8899999999
Q ss_pred eccCCCCccccCccee----------------------------------------------------ccccccCchhhh
Q 038400 257 DLSGNSKIKKLPKSIY----------------------------------------------------CLELEELPKDIR 284 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~----------------------------------------------------~~~l~~lp~~i~ 284 (504)
+++++. +..++.... .......+....
T Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (384)
T d2omza2 116 TLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194 (384)
T ss_dssp ECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 998764 332221100 001112234566
Q ss_pred ccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEE
Q 038400 285 HLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLF 364 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 364 (504)
.+++++.++++++.+...+ ....+++|++|++++|. +..++ .+..+++|+.|++.+|. +..++. ++.+++|++|+
T Consensus 195 ~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~ 269 (384)
T d2omza2 195 KLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELK 269 (384)
T ss_dssp GCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEE
T ss_pred cccccceeeccCCccCCCC-cccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCc-cCCCCc-ccccccCCEee
Confidence 7888999999888766554 35678899999999864 44544 67888999999999885 556654 77789999999
Q ss_pred eccCCCc
Q 038400 365 LYKCESL 371 (504)
Q Consensus 365 l~~~~~l 371 (504)
++++...
T Consensus 270 l~~~~l~ 276 (384)
T d2omza2 270 LGANQIS 276 (384)
T ss_dssp CCSSCCC
T ss_pred ccCcccC
Confidence 9887543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.72 E-value=1.5e-16 Score=149.44 Aligned_cols=241 Identities=14% Similarity=0.197 Sum_probs=159.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++.+. .+.+..|.++++|++|+++++.+..+ |..+.++++|++|++++|+ ++.+
T Consensus 31 ~~l~~L~Ls~N~i~---~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-------------l~~l 94 (305)
T d1xkua_ 31 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-------------LKEL 94 (305)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------CSBC
T ss_pred CCCCEEECcCCcCC---CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-------------cCcC
Confidence 56888888776554 22233467788888888888888866 4567888888888888774 4444
Q ss_pred chhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCc--ccchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDL--EHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|..+ ...++.|++..+.+...+ ..+.....++.+....+... ...+..+..+++|+.+++.+|. +..+|..+
T Consensus 95 ~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~-- 169 (305)
T d1xkua_ 95 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL-- 169 (305)
T ss_dssp CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--
T ss_pred ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCccc--
Confidence 4332 245666666655544432 22445556666666554322 2223456667778888887764 55565533
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
+++|+.|++++|...... .......+.++.|.++++ .+..+ +.++ ..+++|++|+|++| .++.+
T Consensus 170 ~~~L~~L~l~~n~~~~~~-----------~~~~~~~~~l~~L~~s~n-~l~~~~~~~~--~~l~~L~~L~L~~N-~L~~l 234 (305)
T d1xkua_ 170 PPSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFN-SISAVDNGSL--ANTPHLRELHLNNN-KLVKV 234 (305)
T ss_dssp CTTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSS-CCCEECTTTG--GGSTTCCEEECCSS-CCSSC
T ss_pred CCccCEEECCCCcCCCCC-----------hhHhhccccccccccccc-cccccccccc--cccccceeeecccc-ccccc
Confidence 567888888776544322 111223346777777765 44444 3444 56789999999998 68889
Q ss_pred CcCCCCCCCcceEecccCccCCcCccC-------CCCCCCcCeEeEeCCC
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSED-------MHHVTTLKSLTIGGCP 478 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-------~~~l~~L~~L~l~~c~ 478 (504)
|.++..+++|++|++++| .++.++.. ....++|+.|++.++|
T Consensus 235 p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 235 PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 999999999999999997 68877542 2356889999999998
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.70 E-value=4.6e-16 Score=146.03 Aligned_cols=221 Identities=15% Similarity=0.110 Sum_probs=171.8
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
+.+++|++++|.++.+|+ .+.++++|++|++++|. +..+ |..+.++++|++|++++|.+...+..
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-------------~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~ 97 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-------------ISKISPGAFAPLVKLERLYLSKNQLKELPEK 97 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred CCCCEEECcCCcCCCcChhHhhcccccccccccccc-------------ccccchhhhhCCCccCEecccCCccCcCccc
Confidence 679999999999999986 68999999999999886 5555 45688999999999999988777653
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc--ccCccCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
....|+.|++..+......+..+.....+..+....+.... ..+..+..+++|+.+++++|....+.
T Consensus 98 --~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--------- 166 (305)
T d1xkua_ 98 --MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--------- 166 (305)
T ss_dssp --CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---------
T ss_pred --hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC---------
Confidence 34688999988865444334456677788888887764322 33456777889999999988543221
Q ss_pred CCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCcc-CcCCCCCCCcceEecccCccCCcCccC
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMAL-PRSLKDLEALETLFILGCPKLSSLSED 462 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~ 462 (504)
....++|+.|++.++......+..+ ..++.++.|.++++. +..+ +..+..+++|++|++++| .++.+|.+
T Consensus 167 -----~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~ 237 (305)
T d1xkua_ 167 -----QGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGG 237 (305)
T ss_dssp -----SSCCTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred -----cccCCccCEEECCCCcCCCCChhHh--hcccccccccccccc-ccccccccccccccceeeecccc-cccccccc
Confidence 1124589999999876655555556 677899999999884 5554 566788999999999998 78999999
Q ss_pred CCCCCCcCeEeEeCCCchhh
Q 038400 463 MHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 463 ~~~l~~L~~L~l~~c~~l~~ 482 (504)
+..+++|++|++++|. ++.
T Consensus 238 l~~l~~L~~L~Ls~N~-i~~ 256 (305)
T d1xkua_ 238 LADHKYIQVVYLHNNN-ISA 256 (305)
T ss_dssp TTTCSSCCEEECCSSC-CCC
T ss_pred cccccCCCEEECCCCc-cCc
Confidence 9999999999999985 554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=7.1e-16 Score=143.11 Aligned_cols=200 Identities=22% Similarity=0.287 Sum_probs=107.2
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeec-cccccc-cc
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALT-TKQKSL-QE 303 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~-~~~~~~-~~ 303 (504)
..+++|+|++|.++.+|. .+.++++|++|+++++. +..++.. ...+..++++... .+.... .+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-------------l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~ 98 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-------------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-------------ccccccccccccccccccccccccccccccc
Confidence 345666666666665553 45566666666666543 2222211 2334445554443 222222 23
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCC
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
..+.++++|++|++++|......+..++.+.+|+.+++.+|. ++.+| ..+..+++|+.|++++|
T Consensus 99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N-------------- 163 (284)
T d1ozna_ 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-------------- 163 (284)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS--------------
T ss_pred hhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccC--------------
Confidence 345555555555555544332233344455555555555543 33332 33445555555555554
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED 462 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 462 (504)
.+..++...+ ..+++|+.+.+.++......|..+..+++|++|+++++......+..
T Consensus 164 ----------------------~l~~l~~~~f-~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~ 220 (284)
T d1ozna_ 164 ----------------------RISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (284)
T ss_dssp ----------------------CCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred ----------------------cccccchhhh-ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc
Confidence 2333332211 45677888888777544444677788888888888887544334456
Q ss_pred CCCCCCcCeEeEeCCC
Q 038400 463 MHHVTTLKSLTIGGCP 478 (504)
Q Consensus 463 ~~~l~~L~~L~l~~c~ 478 (504)
+..+++|++|+++++|
T Consensus 221 ~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 221 LAPLRALQYLRLNDNP 236 (284)
T ss_dssp HTTCTTCCEEECCSSC
T ss_pred cccccccCEEEecCCC
Confidence 6778888888887644
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.5e-16 Score=144.69 Aligned_cols=173 Identities=21% Similarity=0.236 Sum_probs=135.6
Q ss_pred CcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 228 QFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+++++|+|++|.++.+| ..+.++++|++|++++|. ++.+|. ++.+++|++|++++|.+...+..+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-------------l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 96 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-------------LTKLQV-DGTLPVLGTLDLSHNQLQSLPLLG 96 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-------------CCEEEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-------------cccccc-cccccccccccccccccccccccc
Confidence 57899999999999887 468899999999999885 445543 457899999999999988888889
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
.++++|+.|+++++......+..+..+.+++.|++.+|. +..+| ..+..+++|+.|++++|..-.
T Consensus 97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~------------- 162 (266)
T d1p9ag_ 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE------------- 162 (266)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC-------------
T ss_pred ccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccc-------------
Confidence 999999999999987666556677889999999999985 55554 456678899999998874221
Q ss_pred CCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
++. .+ ..+++|++|+|+++ .++.+|.++..+++|+.|+|++++
T Consensus 163 -----------------------~~~~~~--~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 163 -----------------------LPAGLL--NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp -----------------------CCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -----------------------cCcccc--ccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence 221 12 45678888888877 477888877788888888888764
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=6.9e-16 Score=149.69 Aligned_cols=239 Identities=20% Similarity=0.259 Sum_probs=159.0
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.+.++++|.+.++++... +.+..+++|++|++++|.++.+|. ++++++|++|++++|. +..
T Consensus 42 ~l~~l~~L~l~~~~I~~l-----~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-------------i~~ 102 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-------------IAD 102 (384)
T ss_dssp HHTTCCEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-------------CCC
T ss_pred HhCCCCEEECCCCCCCCc-----cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccc-------------ccc
Confidence 456899999998776522 136789999999999999998875 9999999999999986 444
Q ss_pred CchhhhccccCCeeeeccccccccc-------------------------------------------------------
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQE------------------------------------------------------- 303 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~------------------------------------------------------- 303 (504)
++ .++.+++|+.|+++++......
T Consensus 103 i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (384)
T d2omza2 103 IT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181 (384)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence 43 2566677777776654332111
Q ss_pred ---------ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccc
Q 038400 304 ---------SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLN 374 (504)
Q Consensus 304 ---------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~ 374 (504)
.....+++++.+++++|. +..++ ..+.+++|++|++++|. ++.++ .+..+++|+.|++++|......
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~-~~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 257 (384)
T d2omza2 182 ISSNKVSDISVLAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLA 257 (384)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred ccccccccccccccccccceeeccCCc-cCCCC-cccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCccCCCC
Confidence 123445667777776653 33333 24567788888888874 55554 4677888888888887533221
Q ss_pred ccccccCCCCCCCCCCCCCccceEEEccCC---------------------CcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 375 INMEMEGEGSNHDRKNTRPHLRRVVIGEIT---------------------QLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
.....++|+.|+++++. .+..++. + ..+++++.|+++++ .++
T Consensus 258 -------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~--~~~~~l~~L~ls~n-~l~ 320 (384)
T d2omza2 258 -------------PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-I--SNLKNLTYLTLYFN-NIS 320 (384)
T ss_dssp -------------GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-G--GGCTTCSEEECCSS-CCS
T ss_pred -------------cccccccCCEeeccCcccCCCCccccccccccccccccccccccc-c--chhcccCeEECCCC-CCC
Confidence 11122345555554321 1222221 1 34678888888877 466
Q ss_pred ccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCchhh
Q 038400 434 ALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 482 (504)
.++. +..+++|++|++++| .++.++ .+.++++|++|++++|. ++.
T Consensus 321 ~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~-l~~ 365 (384)
T d2omza2 321 DISP-VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQ-ISD 365 (384)
T ss_dssp CCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSC-CCB
T ss_pred CCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCc-CCC
Confidence 6653 778899999999988 677776 47788999999998884 444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=4.1e-15 Score=133.01 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=113.3
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+.+|+.|++.+|.++.+ +.+..+++|++|++++|. +..++. +..+++|++++++++.....+ .+
T Consensus 40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~-------------i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l 103 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ-------------ITDLAP-LKNLTKITELELSGNPLKNVS-AI 103 (227)
T ss_dssp HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC-------------CCCCGG-GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCce-------------eecccc-ccccccccccccccccccccc-cc
Confidence 45667777777776666 346667777777777664 333332 556666666666655544332 45
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNH 386 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 386 (504)
.++++|+.+++++|.... ...+...+.++.+.+.++. +...+ .+...++|+.|.+++|.
T Consensus 104 ~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~L~~L~l~~n~----------------- 162 (227)
T d1h6ua2 104 AGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQ----------------- 162 (227)
T ss_dssp TTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC-----------------
T ss_pred cccccccccccccccccc--cchhccccchhhhhchhhh-hchhh-hhccccccccccccccc-----------------
Confidence 566666666666544322 1234455556666555543 22221 13445555555555442
Q ss_pred CCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCC
Q 038400 387 DRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHV 466 (504)
Q Consensus 387 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l 466 (504)
+...+. + ..+++|+.|++++| .++.++. +..+++|++|++++| .++.++. +.++
T Consensus 163 -------------------~~~~~~-l--~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~-l~~l 216 (227)
T d1h6ua2 163 -------------------VSDLTP-L--ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP-LANT 216 (227)
T ss_dssp -------------------CCCCGG-G--TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTC
T ss_pred -------------------cccchh-h--cccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc-cccC
Confidence 222221 2 45788888888887 5677664 788899999999988 6888874 7788
Q ss_pred CCcCeEeEeC
Q 038400 467 TTLKSLTIGG 476 (504)
Q Consensus 467 ~~L~~L~l~~ 476 (504)
++|+.|++++
T Consensus 217 ~~L~~L~lsn 226 (227)
T d1h6ua2 217 SNLFIVTLTN 226 (227)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEeeC
Confidence 9999998863
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-14 Score=134.36 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=120.1
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+.+++|+++++.+. .+.+..|.+++.|++|+++++.+..++ ..+..+..++.+....+..++.++
T Consensus 32 ~~~~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~----------- 97 (284)
T d1ozna_ 32 AASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD----------- 97 (284)
T ss_dssp TTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-----------
T ss_pred CCCCEEECcCCcCC---CCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 56899999987764 233446889999999999999998665 456678889988877554333332
Q ss_pred chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCcccc-CccCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISL-PPAIKY 356 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~ 356 (504)
|..+.++++|++|++++|..... ...+..+++|+.++++++. ++.+| ..+..+++|+.|++++|. +..+ +..+..
T Consensus 98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~ 175 (284)
T d1ozna_ 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG 175 (284)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred chhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCc-ccccchhhhcc
Confidence 34578899999999998886554 4457789999999999965 55554 567889999999999985 5555 457788
Q ss_pred CCCccEEEeccCCCcc
Q 038400 357 LSSLETLFLYKCESLD 372 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~ 372 (504)
+++|+.+.+++|....
T Consensus 176 l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 176 LHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTCCEEECCSSCCCE
T ss_pred ccccchhhhhhccccc
Confidence 9999999999886443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=3.5e-14 Score=123.96 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=16.8
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGN 261 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 261 (504)
.++++|+++++.+..++ .+..+++|++|++++|
T Consensus 40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N 72 (199)
T d2omxa2 40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN 72 (199)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCCCCCcc-ccccCCCcCcCccccc
Confidence 44555555555555442 3445555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=9.7e-14 Score=125.20 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=134.6
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccc--ccccCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSL--QESGIR 307 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~ 307 (504)
++++.++.+++.+|..+. .++++|++++|. +..+|. .+.++++|++|++++|.... .+..+.
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~-------------i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~ 75 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-------------LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 75 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCC-------------CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCc-------------CCccChhHhhccchhhhhhhccccccceeeccccc
Confidence 566777777777776653 478888888764 455554 35677888888888776543 234567
Q ss_pred CCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCccCCCCCCccEE---EeccCCCccccccccccCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETL---FLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L---~l~~~~~l~~~~~~~~~~~~ 383 (504)
++++++++.+..++.+...+ ..+..+++|+.|++.+|. +...+. ...+.+++.+ ...++....+.
T Consensus 76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~--------- 144 (242)
T d1xwdc1 76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPD-VHKIHSLQKVLLDIQDNINIHTIE--------- 144 (242)
T ss_dssp SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCC-CTTTCBSSCEEEEEESCTTCCEEC---------
T ss_pred cccccccccccccccccccccccccccccccccccchhh-hccccc-cccccccccccccccccccccccc---------
Confidence 78888888887766555544 456788888888888874 444433 3333334333 33332221111
Q ss_pred CCCCCCC-CCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC-CCCCCCcceEecccCccCCcCcc
Q 038400 384 SNHDRKN-TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS-LKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 384 ~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
..... ....+..|.+.+ ..+..++... ...+++..+...++..++.+|.. +.++++|++|+++++ .++.+|.
T Consensus 145 --~~~~~~~~~~l~~L~l~~-n~l~~i~~~~--~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~ 218 (242)
T d1xwdc1 145 --RNSFVGLSFESVILWLNK-NGIQEIHNCA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS 218 (242)
T ss_dssp --TTSSTTSBSSCEEEECCS-SCCCEECTTT--TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCS
T ss_pred --ccccccccccceeeeccc-cccccccccc--ccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCH
Confidence 01111 122566777765 3566666554 34566777766666788888764 688999999999987 4778865
Q ss_pred C-CCCCCCcCeEeEeCC
Q 038400 462 D-MHHVTTLKSLTIGGC 477 (504)
Q Consensus 462 ~-~~~l~~L~~L~l~~c 477 (504)
. +.++++|+.+++..+
T Consensus 219 ~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 219 YGLENLKKLRARSTYNL 235 (242)
T ss_dssp SSCTTCCEEESSSEESS
T ss_pred HHHcCCcccccCcCCCC
Confidence 3 555666666555443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=5e-14 Score=124.02 Aligned_cols=145 Identities=20% Similarity=0.285 Sum_probs=76.2
Q ss_pred hhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccE
Q 038400 283 IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLET 362 (504)
Q Consensus 283 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 362 (504)
+..+++|++|++++|.+...+ .++.+++|+.|++++| .++.++ .+..+++|+.|++.+|. ...++ .+..+++|+.
T Consensus 64 l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~ 138 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLES 138 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCE
T ss_pred HhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-cccccc-ccccccccccccccccc-ccccc-cccccccccc
Confidence 344444555555544443332 2455555666665554 234443 35556666666666554 22332 2445566666
Q ss_pred EEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCC
Q 038400 363 LFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDL 442 (504)
Q Consensus 363 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 442 (504)
+++++|.... .+ .. ..+++|+.++++++ .++.++. +..+
T Consensus 139 l~~~~n~l~~------------------------------------~~-~~--~~l~~L~~l~l~~n-~l~~i~~-l~~l 177 (210)
T d1h6ta2 139 LYLGNNKITD------------------------------------IT-VL--SRLTKLDTLSLEDN-QISDIVP-LAGL 177 (210)
T ss_dssp EECCSSCCCC------------------------------------CG-GG--GGCTTCSEEECCSS-CCCCCGG-GTTC
T ss_pred cccccccccc------------------------------------cc-cc--cccccccccccccc-ccccccc-ccCC
Confidence 6665543111 11 11 23455666666655 3444443 5666
Q ss_pred CCcceEecccCccCCcCccCCCCCCCcCeEeEe
Q 038400 443 EALETLFILGCPKLSSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 443 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 475 (504)
++|++|++++| .++.+| .+.++++|+.|+|+
T Consensus 178 ~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 178 TKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp TTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred CCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence 77777777766 466665 36667777777765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9e-16 Score=142.13 Aligned_cols=249 Identities=17% Similarity=0.201 Sum_probs=154.8
Q ss_pred EEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhh
Q 038400 205 TIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIR 284 (504)
Q Consensus 205 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~ 284 (504)
++++++.. .........+. ..+..+.+..+.+...........+|++||+++|. +. ...++..+.
T Consensus 4 ~lDLs~~~--l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~-i~----------~~~l~~l~~ 68 (284)
T d2astb2 4 TLDLTGKN--LHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IE----------VSTLHGILS 68 (284)
T ss_dssp EEECTTCB--CCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-EC----------HHHHHHHHT
T ss_pred EEECCCCC--CCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCc-cC----------HHHHHHHHH
Confidence 56676544 23333333333 23556667666555433445566789999999874 11 223444567
Q ss_pred ccccCCeeeeccccccc-ccccCCCCCCccEEeeeCCCCccc--chhhcCCCCcccEEeeccCCCccc--cCccCC-CCC
Q 038400 285 HLTSLRAFALTTKQKSL-QESGIRSLGSLRCLTISGCGDLEH--LFEEIDQLRVLRTLSIVCCPRLIS--LPPAIK-YLS 358 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~--l~~~l~-~l~ 358 (504)
++++|++|+++++.... ....+.++++|++|++++|..++. +...+..+++|++|++++|..++. +...+. ..+
T Consensus 69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~ 148 (284)
T d2astb2 69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 148 (284)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence 88999999999886542 234577889999999999887753 233345688999999999876542 222222 346
Q ss_pred CccEEEeccCCC-ccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCc-c
Q 038400 359 SLETLFLYKCES-LDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMA-L 435 (504)
Q Consensus 359 ~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-l 435 (504)
+|+.|++++|.. +... .. .......++|++|++++|..+++- ...+ ..+++|++|++++|..++. .
T Consensus 149 ~L~~L~l~~~~~~i~~~-~l--------~~l~~~~~~L~~L~L~~~~~itd~~~~~l--~~~~~L~~L~L~~C~~i~~~~ 217 (284)
T d2astb2 149 TITQLNLSGYRKNLQKS-DL--------STLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPET 217 (284)
T ss_dssp TCCEEECCSCGGGSCHH-HH--------HHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGG
T ss_pred ccchhhhcccccccccc-cc--------cccccccccccccccccccCCCchhhhhh--cccCcCCEEECCCCCCCChHH
Confidence 899999988742 2211 00 001112457899999888777643 2333 4578899999998877753 2
Q ss_pred CcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
...++.+|+|+.|++++|-.-..++.....+|+|+ + +|..++..
T Consensus 218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~ 261 (284)
T d2astb2 218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI 261 (284)
T ss_dssp GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence 34467788999999988833333332223455554 3 45556554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.5e-15 Score=139.10 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=15.7
Q ss_pred CcccEEEeCCCCcc--ccCccccCCCCcCeeeccCC
Q 038400 228 QFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGN 261 (504)
Q Consensus 228 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~ 261 (504)
..|++|+++++.+. .++..+..+++|++|++++|
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 34555555554443 12333444555555555544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=9.8e-14 Score=123.85 Aligned_cols=190 Identities=22% Similarity=0.237 Sum_probs=143.4
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccc
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL 276 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l 276 (504)
..++.+|+.|.+.++.+.. + ..+.++++|++|++++|.+..++. +..+++|+++++++|. +
T Consensus 37 ~~~l~~L~~L~l~~~~i~~---l--~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-------------~ 97 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTT---I--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-------------L 97 (227)
T ss_dssp HHHHHTCCEEECTTSCCCC---C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-------------C
T ss_pred HHHcCCcCEEECCCCCCCc---c--hhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-------------c
Confidence 3456789999998776542 1 136789999999999999987653 8999999999999875 4
Q ss_pred ccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 277 EELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 277 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
+.++ .+..+++|+.++++++...... .+...+.++.+.++++..... ..+..+++|++|++.+|. +...+. +++
T Consensus 98 ~~i~-~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~-~~~~~~-l~~ 171 (227)
T d1h6ua2 98 KNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ-VSDLTP-LAN 171 (227)
T ss_dssp SCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSC-CCCCGG-GTT
T ss_pred cccc-cccccccccccccccccccccc-hhccccchhhhhchhhhhchh--hhhccccccccccccccc-cccchh-hcc
Confidence 4444 4678999999999987765543 477888999999988654332 346788999999999875 444433 788
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP 436 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 436 (504)
+++|++|++++|. + ++++. + ..+++|++|++++| .++.++
T Consensus 172 l~~L~~L~Ls~n~-l-----------------------------------~~l~~-l--~~l~~L~~L~Ls~N-~lt~i~ 211 (227)
T d1h6ua2 172 LSKLTTLKADDNK-I-----------------------------------SDISP-L--ASLPNLIEVHLKNN-QISDVS 211 (227)
T ss_dssp CTTCCEEECCSSC-C-----------------------------------CCCGG-G--GGCTTCCEEECTTS-CCCBCG
T ss_pred cccceecccCCCc-c-----------------------------------CCChh-h--cCCCCCCEEECcCC-cCCCCc
Confidence 9999999998873 2 22221 2 35688999999888 577776
Q ss_pred cCCCCCCCcceEeccc
Q 038400 437 RSLKDLEALETLFILG 452 (504)
Q Consensus 437 ~~~~~l~~L~~L~l~~ 452 (504)
. +.++++|+.|++++
T Consensus 212 ~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 212 P-LANTSNLFIVTLTN 226 (227)
T ss_dssp G-GTTCTTCCEEEEEE
T ss_pred c-cccCCCCCEEEeeC
Confidence 4 78889999998864
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=9.5e-14 Score=122.21 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=132.2
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+..|+.|+++++.+..++ .+..+++|++|++++|. +..++ .++.+++|++|++++|.+...+ .+
T Consensus 45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-------------i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l 108 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-------------LTDIK-PLANLKNLGWLFLDENKVKDLS-SL 108 (210)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------CCCCG-GGTTCTTCCEEECCSSCCCCGG-GG
T ss_pred hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-------------ccCcc-ccccCccccccccccccccccc-cc
Confidence 467899999999998875 58899999999999985 56665 3678999999999999887665 68
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNH 386 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 386 (504)
.++++|+.|++++|.. ..+ ..+..+++|+.+++.+|. +...+ .+..+++|+.+++++|..
T Consensus 109 ~~l~~L~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l---------------- 168 (210)
T d1h6ta2 109 KDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQI---------------- 168 (210)
T ss_dssp TTCTTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCC----------------
T ss_pred cccccccccccccccc-ccc-cccccccccccccccccc-ccccc-cccccccccccccccccc----------------
Confidence 9999999999998754 333 468889999999999875 44443 466788999999988742
Q ss_pred CCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEeccc
Q 038400 387 DRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILG 452 (504)
Q Consensus 387 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 452 (504)
..++. + ..+++|+.|++++| .++.++ .+..+++|++|+|++
T Consensus 169 --------------------~~i~~-l--~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 169 --------------------SDIVP-L--AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp --------------------CCCGG-G--TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred --------------------ccccc-c--cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence 12222 2 46799999999988 578887 489999999999975
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=2.6e-13 Score=118.24 Aligned_cols=176 Identities=19% Similarity=0.237 Sum_probs=117.8
Q ss_pred EeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCcc
Q 038400 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLR 313 (504)
Q Consensus 234 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 313 (504)
.+..+.++..+ ....+.++++|++++|. +..++ ++..+++|++|++++|.+...+ .++++++|+
T Consensus 24 ~l~~~~~~~~~-~~~~l~~l~~L~l~~~~-------------i~~l~-~l~~l~nL~~L~Ls~N~l~~~~-~l~~l~~L~ 87 (199)
T d2omxa2 24 VLGKTNVTDTV-SQTDLDQVTTLQADRLG-------------IKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLV 87 (199)
T ss_dssp HTTCSSTTSEE-CHHHHTTCCEEECTTSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCC
T ss_pred HhCCCCCCCcc-CHHHhcCCCEEECCCCC-------------CCCcc-ccccCCCcCcCccccccccCcc-cccCCcccc
Confidence 34445544322 22456788888888875 44443 4677888888888888776654 378888888
Q ss_pred EEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCC
Q 038400 314 CLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRP 393 (504)
Q Consensus 314 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (504)
+|++++|. ...++ .++.+++|+.|++++|... .++ .+..+++|+.|++++|..
T Consensus 88 ~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~~~~~-~~~-~~~~l~~L~~L~l~~n~l----------------------- 140 (199)
T d2omxa2 88 DILMNNNQ-IADIT-PLANLTNLTGLTLFNNQIT-DID-PLKNLTNLNRLELSSNTI----------------------- 140 (199)
T ss_dssp EEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCC-----------------------
T ss_pred cccccccc-ccccc-ccccccccccccccccccc-ccc-ccchhhhhHHhhhhhhhh-----------------------
Confidence 88888764 33444 4778888888888776533 332 366777888888777631
Q ss_pred ccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeE
Q 038400 394 HLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSL 472 (504)
Q Consensus 394 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 472 (504)
..++ .+ ..+++|+.|++.+| .++.++. ++++++|++|++++| .++.++ .+..+++|+.|
T Consensus 141 -------------~~~~-~l--~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 141 -------------SDIS-AL--SGLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISSN-KVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp -------------CCCG-GG--TTCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEE
T ss_pred -------------cccc-cc--cccccccccccccc-cccCCcc-ccCCCCCCEEECCCC-CCCCCc-cccCCCCCCcC
Confidence 2222 12 35677888888776 4556553 778888888888887 577776 36677777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.47 E-value=2.3e-12 Score=122.63 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=47.4
Q ss_pred CCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 417 STDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
.+++|++|++++| .++.+|. .+++|+.|++++| .++++|. .+++|++|++++|+ ++..
T Consensus 282 ~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~l 339 (353)
T d1jl5a_ 282 LPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREF 339 (353)
T ss_dssp CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSC
T ss_pred cCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCC
Confidence 4689999999988 5778885 3688999999988 6888886 35789999999997 7665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.45 E-value=3.7e-12 Score=121.15 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.++++|++++++... + + ...++|++|++++|.++.+|..+ .+|+.|++++|. +. .+..+|
T Consensus 38 ~~l~~LdLs~~~L~~---l-p---~~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~-l~---------~l~~lp 97 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS---L-P---ELPPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-LK---------ALSDLP 97 (353)
T ss_dssp HTCSEEECTTSCCSC---C-C---SCCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-CS---------CCCSCC
T ss_pred cCCCEEEeCCCCCCC---C-C---CCCCCCCEEECCCCCCcccccch---hhhhhhhhhhcc-cc---------hhhhhc
Confidence 367888888766441 1 1 13468899999999999888764 467888888775 22 123333
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCC
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 321 (504)
+.|++|++++|.+...+ .++.+++|++|+++++.
T Consensus 98 ------~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 98 ------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS 131 (353)
T ss_dssp ------TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred ------ccccccccccccccccc-chhhhccceeecccccc
Confidence 46899999999887765 47889999999998864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=1.6e-12 Score=103.44 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=82.3
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLG 310 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~ 310 (504)
|+|++++|+++.++ .++.+.+|++|++++|. +..+|..++.+++|++|++++|.+...+ .+.+++
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~-------------l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~ 65 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNR-------------LRALPPALAALRCLEVLQASDNALENVD-GVANLP 65 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSC-------------CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCc-------------cCcchhhhhhhhcccccccccccccccC-cccccc
Confidence 68999999999886 48899999999999886 7788888889999999999999887765 588999
Q ss_pred CccEEeeeCCCCcccch--hhcCCCCcccEEeeccCC
Q 038400 311 SLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 311 ~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~ 345 (504)
+|++|++++|. +..++ ..++.+++|+.|++++|+
T Consensus 66 ~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 66 RLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp SCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ccCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCc
Confidence 99999998864 44343 457788889999998875
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.5e-13 Score=111.63 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=89.4
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+.+...||.|+|++|.++.+|.....+.+|++|++++|. +..++ ++..+++|++|++++|.+...+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-------------i~~l~-~~~~l~~L~~L~ls~N~i~~l~ 79 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-------------IRKLD-GFPLLRRLKTLLVNNNRICRIG 79 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-------------CCEEC-CCCCCSSCCEEECCSSCCCEEC
T ss_pred ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-------------CCccC-CcccCcchhhhhcccccccCCC
Confidence 345667888888888888887666778888888888875 44443 3567788888888888777665
Q ss_pred cc-CCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----cCCCCCCccEEEec
Q 038400 304 SG-IRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----AIKYLSSLETLFLY 366 (504)
Q Consensus 304 ~~-~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~l~~l~~L~~L~l~ 366 (504)
+. +..+++|++|++++|. +..++ ..+..+++|++|++++|+ +...|. .+..+++|+.|+-.
T Consensus 80 ~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 80 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 44 3568888888888864 33333 356778888888888875 455543 35667788877643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.1e-11 Score=109.44 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=134.7
Q ss_pred cccCchhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC-c
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP-P 352 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~ 352 (504)
++.+|.++. +++++|++++|.+...+. .+.++++|++|++++|.....++ ..+..++++++|.+..+..+..++ .
T Consensus 20 l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~ 97 (242)
T d1xwdc1 20 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 97 (242)
T ss_dssp CSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred CCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence 566666553 579999999998877654 57999999999999987766554 457889999999988766665554 5
Q ss_pred cCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEE--ccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 353 AIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVI--GEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 353 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
.+..+++|+.|+++++...... ......+++.+.. .+...+..++...+.+....++.|.+.++
T Consensus 98 ~~~~l~~L~~l~l~~~~l~~~~-------------~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n- 163 (242)
T d1xwdc1 98 AFQNLPNLQYLLISNTGIKHLP-------------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN- 163 (242)
T ss_dssp SEECCTTCCEEEEESCCCCSCC-------------CCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cccccccccccccchhhhcccc-------------cccccccccccccccccccccccccccccccccccceeeecccc-
Confidence 6788999999999988533211 1111223444332 22345555554332233357888888765
Q ss_pred CCCccCcCCCCCCCcceEecccCccCCcCccC-CCCCCCcCeEeEeCCCchhhh
Q 038400 431 NFMALPRSLKDLEALETLFILGCPKLSSLSED-MHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 431 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~ 483 (504)
.++.++......+++..+....+..++.+|.. +.++++|++|+++++. ++..
T Consensus 164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l 216 (242)
T d1xwdc1 164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL 216 (242)
T ss_dssp CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCC
T ss_pred cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCcc
Confidence 57788877777788888877666789999864 6889999999999986 4443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.19 E-value=2.7e-12 Score=117.44 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=61.5
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhh-----hhccCCchhHHHhhhhCCChhhHh
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL-----EQKESGILPILRLSYYQLPPHLKQ 76 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~-----~~~~~~i~~~L~~sy~~L~~~~k~ 76 (504)
++||+... ++..++++++||++|+|+||||+++|+.|+. ++.+.|... .....++..++++||++||.++|.
T Consensus 196 ~~~~~~~~--~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~-k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~ 272 (277)
T d2a5yb3 196 AYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 272 (277)
T ss_dssp HTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHH
T ss_pred HHhCCccC--chhhHHHHHHHHHHhCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHH
Confidence 46776544 4678999999999999999999999999984 455566552 234578999999999999999999
Q ss_pred hhhh
Q 038400 77 CVAY 80 (504)
Q Consensus 77 ~fl~ 80 (504)
||-+
T Consensus 273 c~~~ 276 (277)
T d2a5yb3 273 CVEV 276 (277)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9965
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=1.1e-10 Score=100.61 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=97.1
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc-C-chhhhccccCCeeeecccccccc-cccC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE-L-PKDIRHLTSLRAFALTTKQKSLQ-ESGI 306 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~-l-p~~i~~l~~L~~L~l~~~~~~~~-~~~~ 306 (504)
.++++.++++++.+|..+. .++++|+|++|. +.. + +..+..+++|++|++++|.+... +..+
T Consensus 10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~-------------i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~ 74 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNE-------------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCC-------------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCC-------------CcccccccccCCCceEeeeecccccccccccccc
Confidence 4578888999999998774 689999999885 432 2 23467899999999998876654 4567
Q ss_pred CCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCcccc-CccCCCCCCccEEEeccCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISL-PPAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~~~~ 370 (504)
..+++|++|++++|. +..+| ..+.++++|++|+|++|. ++.+ +.++..+++|++|++++|+.
T Consensus 75 ~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccccccceeeecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence 889999999999974 55554 568899999999999986 5655 45678899999999998753
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=9.8e-11 Score=92.78 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=83.0
Q ss_pred CeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCC
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQL 333 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l 333 (504)
|+|++++|. +..++ .+..+++|++|++++|.+...|+.++.+++|+.|++++| .++.+| .++.+
T Consensus 1 R~L~Ls~n~-------------l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l 64 (124)
T d1dcea3 1 RVLHLAHKD-------------LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANL 64 (124)
T ss_dssp SEEECTTSC-------------CSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTC
T ss_pred CEEEcCCCC-------------CCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccC-ccccc
Confidence 688999886 66666 478999999999999998888778999999999999995 566665 58999
Q ss_pred CcccEEeeccCCCccccC--ccCCCCCCccEEEeccCCC
Q 038400 334 RVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 334 ~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~~~ 370 (504)
++|++|++++|. +..++ ..+..+++|+.|++++|+.
T Consensus 65 ~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 65 PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cccCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCcC
Confidence 999999999985 55554 3577889999999998863
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=1.4e-12 Score=113.06 Aligned_cols=127 Identities=21% Similarity=0.262 Sum_probs=95.3
Q ss_pred HHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc
Q 038400 222 SCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL 301 (504)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 301 (504)
..+..+++|+.|++++|.++.++ .+..+++|++|++++|. +..+|.....+++|++|++++|.+..
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-------------i~~i~~~~~~~~~L~~L~l~~N~i~~ 107 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-------------IKKIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-------------ECSCSSHHHHHHHCCEEECSEEECCC
T ss_pred hHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-------------cccccccccccccccccccccccccc
Confidence 44677889999999999998875 58889999999999875 56666555667789999999888776
Q ss_pred ccccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----------cCCCCCCccEEE
Q 038400 302 QESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----------AIKYLSSLETLF 364 (504)
Q Consensus 302 ~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----------~l~~l~~L~~L~ 364 (504)
.+ .+..+++|+.|++++|. +..++ ..++.+++|+.|++++|+.....+. .+..+++|+.|+
T Consensus 108 l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 108 LS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cc-cccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 53 57888999999998864 44444 4678899999999998863222221 134577787775
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.3e-10 Score=96.85 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=86.2
Q ss_pred cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 246 KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
.+.++.+|+.|+|++|. +..+|.....+++|++|++++|.+... +.+..+++|++|++++|. +..
T Consensus 13 ~~~n~~~lr~L~L~~n~-------------I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~-i~~ 77 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYK-------------IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICR 77 (162)
T ss_dssp EEECTTSCEEEECTTSC-------------CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCE
T ss_pred hccCcCcCcEEECCCCC-------------CCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhccccc-ccC
Confidence 35677889999999986 666765567889999999999988776 468999999999999975 555
Q ss_pred chhh-cCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccCCC
Q 038400 326 LFEE-IDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 326 ~~~~-~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~~~ 370 (504)
+++. +..+++|+.|++++|. +..++ ..+..+++|++|++++|+.
T Consensus 78 l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 78 IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCccccccccccccceecccc-ccccccccccccccccchhhcCCCcc
Confidence 6544 4678999999999985 55554 3567788999999998853
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=1.9e-09 Score=92.67 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=76.6
Q ss_pred cccCchhhhccccCCeeeeccccccc--ccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-c
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-P 352 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~ 352 (504)
+..+|.++. +++++|++++|.+.. ....+.++++|++|++++|......+..+..+++|++|++++|. ++.+| .
T Consensus 20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~ 96 (192)
T d1w8aa_ 20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNK 96 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSS
T ss_pred cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHH
Confidence 666676653 689999999998853 34567899999999999987777777888999999999999985 66664 5
Q ss_pred cCCCCCCccEEEeccCCCcc
Q 038400 353 AIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 353 ~l~~l~~L~~L~l~~~~~l~ 372 (504)
++.++++|++|++++|..-.
T Consensus 97 ~F~~l~~L~~L~L~~N~l~~ 116 (192)
T d1w8aa_ 97 MFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCE
T ss_pred HHhCCCcccccccCCccccc
Confidence 68999999999999986443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.4e-10 Score=114.07 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=41.9
Q ss_pred ccceEEEccCCCcccchhhh--hcCCCCCccEEEeccCCCCC-----ccCcCCC-CCCCcceEecccCccCCc-----Cc
Q 038400 394 HLRRVVIGEITQLLELPQWL--LQGSTDTLQNLLIIDCPNFM-----ALPRSLK-DLEALETLFILGCPKLSS-----LS 460 (504)
Q Consensus 394 ~L~~L~l~~~~~l~~~~~~~--~~~~~~~L~~L~l~~~~~l~-----~l~~~~~-~l~~L~~L~l~~c~~l~~-----l~ 460 (504)
.|+.+.+.++.--......+ .....++|+.|+|+++. +. .++..+. ..+.|++|++++| .++. ++
T Consensus 313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~ 390 (460)
T d1z7xw1 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA 390 (460)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred ccccccccccchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHH
Confidence 56666666653211111111 00234567777777663 32 1222232 3456777777777 3432 33
Q ss_pred cCCCCCCCcCeEeEeCCC
Q 038400 461 EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 461 ~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|++|++++++
T Consensus 391 ~~l~~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 391 ATLLANHSLRELDLSNNC 408 (460)
T ss_dssp HHHHHCCCCCEEECCSSS
T ss_pred HHHhcCCCCCEEECCCCc
Confidence 344456777777777764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.87 E-value=2.4e-11 Score=105.12 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=100.7
Q ss_pred chhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcce
Q 038400 192 DFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI 271 (504)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~ 271 (504)
.++..+..+++|+.|+++++.+.... .+..+++|++|++++|.++.+|.....+++|++|++++|.
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-----~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~--------- 104 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEKIS-----SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ--------- 104 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESCCC-----CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE---------
T ss_pred hhhhHHhcccccceeECcccCCCCcc-----cccCCccccChhhccccccccccccccccccccccccccc---------
Confidence 34566888999999999877654221 2567899999999999999888766777889999999875
Q ss_pred eccccccCchhhhccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCcccchh----------hcCCCCcccEE
Q 038400 272 YCLELEELPKDIRHLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLFE----------EIDQLRVLRTL 339 (504)
Q Consensus 272 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----------~~~~l~~L~~L 339 (504)
+..++ .+..+++|++|++++|.+...+ ..+..+++|+.|++++|+.....+. .+..+++|+.|
T Consensus 105 ----i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L 179 (198)
T d1m9la_ 105 ----IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp ----CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred ----ccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence 55553 5789999999999999876654 4588999999999999753222111 25568889988
Q ss_pred ee
Q 038400 340 SI 341 (504)
Q Consensus 340 ~l 341 (504)
+-
T Consensus 180 D~ 181 (198)
T d1m9la_ 180 DG 181 (198)
T ss_dssp SS
T ss_pred CC
Confidence 63
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.80 E-value=9e-10 Score=104.15 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=86.4
Q ss_pred hhhhcCCCCeeEEeeecCCccc-chHHHHHHhcCCCcccEEEeCCCCccc-----------cCccccCCCCcCeeeccCC
Q 038400 194 SSLLSDLGRVRTIVFSTDDEKI-SQSFVESCISKSQFLRVLNLSESAIEV-----------CPRKIGNLKHMRYLDLSGN 261 (504)
Q Consensus 194 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------lp~~~~~l~~L~~L~l~~~ 261 (504)
...+.....++.|.++++.++. ....+...+...+.|+.|+++++.... +.+.+...++|+.|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 3445556677777776554331 112233445566777777777654331 1223445667777777766
Q ss_pred CCccccCcceeccccccCchhhhccccCCeeeeccccccccc--------------ccCCCCCCccEEeeeCCCCc----
Q 038400 262 SKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCGDL---- 323 (504)
Q Consensus 262 ~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~l---- 323 (504)
. ++ ...+..+...+...++|++|++++|.+.... ......+.|+.+.++++..-
T Consensus 104 ~-i~-------~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~ 175 (344)
T d2ca6a1 104 A-FG-------PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 175 (344)
T ss_dssp C-CC-------TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred c-cc-------cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence 3 11 1113334445556667777777766432110 00123456666666654321
Q ss_pred ccchhhcCCCCcccEEeeccCCCcc-----ccCccCCCCCCccEEEeccCC
Q 038400 324 EHLFEEIDQLRVLRTLSIVCCPRLI-----SLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 324 ~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~l~~~~ 369 (504)
..+...+...+.|+.|+++.|..-. .+...+..+++|+.|++++|.
T Consensus 176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~ 226 (344)
T d2ca6a1 176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 226 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence 1233344455667777776664211 122334556666666666653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.5e-08 Score=82.05 Aligned_cols=63 Identities=30% Similarity=0.271 Sum_probs=38.0
Q ss_pred cCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
.|.++++|+.|++++|. +..+ +..+..+++|++|+|++|. ++.+|..+....+|+.|++++|+
T Consensus 51 ~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 51 DLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp GSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred hhccccccCcceeeccc-cCCcccccccccccccceeccCCC-CcccChhhhccccccccccCCCc
Confidence 45666666666666643 3333 3456667777777777664 55665544444467777777665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.69 E-value=3.5e-09 Score=99.95 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=122.3
Q ss_pred CeEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccc-------hHHHHHHhcCCCcccEEEeCCCCccc----
Q 038400 177 RVRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKIS-------QSFVESCISKSQFLRVLNLSESAIEV---- 242 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~~---- 242 (504)
.++.+.+.++.+... .+...+...++++.+.+.+...... ...+...+...++|+.|++++|.+..
T Consensus 32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 111 (344)
T d2ca6a1 32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 111 (344)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence 456777776655433 2334567788999999875543211 12234557778999999999998763
Q ss_pred -cCccccCCCCcCeeeccCCCCcccc-CcceeccccccC--chhhhccccCCeeeecccccccc-----cccCCCCCCcc
Q 038400 243 -CPRKIGNLKHMRYLDLSGNSKIKKL-PKSIYCLELEEL--PKDIRHLTSLRAFALTTKQKSLQ-----ESGIRSLGSLR 313 (504)
Q Consensus 243 -lp~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~ 313 (504)
+...+...++|+.|++++|. ++.- ...+ ...+..+ .......+.|+.+.++++.+... ...+...+.|+
T Consensus 112 ~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l-~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~ 189 (344)
T d2ca6a1 112 PLIDFLSKHTPLEHLYLHNNG-LGPQAGAKI-ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189 (344)
T ss_dssp HHHHHHHHCTTCCEEECCSSC-CHHHHHHHH-HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred chhhhhcccccchheeccccc-ccccccccc-cccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence 44556678899999999874 2210 0000 0000000 11123467889999887765422 22355678999
Q ss_pred EEeeeCCCCccc-----chhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCC
Q 038400 314 CLTISGCGDLEH-----LFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 314 ~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
.|++++|..-.. +...+..+++|+.|++++|... ..+...+..+++|++|++++|.
T Consensus 190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~ 254 (344)
T d2ca6a1 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 254 (344)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence 999999764321 2345677899999999998632 2344556778899999999885
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=9.8e-08 Score=78.37 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=67.8
Q ss_pred cccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCC
Q 038400 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIR 307 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~ 307 (504)
....++..++.+...|..+..+++|+.|+++++..++.+|. ..+..+++|+.|++++|.+... +..+.
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 77 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-----------RDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECG-----------GGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCc-----------hhhccccccCcceeeccccCCccccccc
Confidence 34556777777777777777777777777765543333322 2356677777777777776655 34467
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
.+++|++|++++| .++.+|..+-...+|+.|+|++|+
T Consensus 78 ~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 78 FTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp SCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccccccceeccCC-CCcccChhhhccccccccccCCCc
Confidence 7777777777774 355666555444567777777765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.3e-09 Score=105.16 Aligned_cols=290 Identities=18% Similarity=0.156 Sum_probs=150.7
Q ss_pred CeEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccch-HHHHHHhc-CCCcccEEEeCCCCccc-----cCcc
Q 038400 177 RVRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKISQ-SFVESCIS-KSQFLRVLNLSESAIEV-----CPRK 246 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~-----lp~~ 246 (504)
..+.+.+.++.+... .+...+..+++|+.|+++++.++... ......+. ....|++|++++|.++. ++..
T Consensus 28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~ 107 (460)
T d1z7xw1 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 107 (460)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence 456788888876543 23445678889999999876643111 11122222 23579999999998862 4566
Q ss_pred ccCCCCcCeeeccCCCCcccc-----Ccce----------e--------------------ccccc--------------
Q 038400 247 IGNLKHMRYLDLSGNSKIKKL-----PKSI----------Y--------------------CLELE-------------- 277 (504)
Q Consensus 247 ~~~l~~L~~L~l~~~~~~~~l-----p~~~----------~--------------------~~~l~-------------- 277 (504)
+..+++|++|++++|. ++.. +..+ . ...+.
T Consensus 108 l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~ 186 (460)
T d1z7xw1 108 LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186 (460)
T ss_dssp TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred hhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence 7888999999999874 3211 0000 0 00000
Q ss_pred ------------------------------cCchhhhccccCCeeeeccccccc------ccccCCCCCCccEEeeeCCC
Q 038400 278 ------------------------------ELPKDIRHLTSLRAFALTTKQKSL------QESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 278 ------------------------------~lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~ 321 (504)
.....+...+.++.+++..+.... ..........|+.+++++|.
T Consensus 187 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~ 266 (460)
T d1z7xw1 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 266 (460)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccc
Confidence 000111222334444443332211 01112334455555555543
Q ss_pred Cccc----chhhcCCCCcccEEeeccCCCcc----ccCcc-CCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCC
Q 038400 322 DLEH----LFEEIDQLRVLRTLSIVCCPRLI----SLPPA-IKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTR 392 (504)
Q Consensus 322 ~l~~----~~~~~~~l~~L~~L~l~~~~~l~----~l~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 392 (504)
.... ....+...+.++.+++++|.... .+... ......|+.+.+++|..-..... .+ .......
T Consensus 267 i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~-~l------~~~~~~~ 339 (460)
T d1z7xw1 267 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS-HF------SSVLAQN 339 (460)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-HH------HHHHHHC
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhh-hc------ccccccc
Confidence 2211 12233345556666665553211 11111 11234667777766642211000 00 0000112
Q ss_pred CccceEEEccCCCccc-----chhhhhcCCCCCccEEEeccCCCCCc-----cCcCCCCCCCcceEecccCccCCc----
Q 038400 393 PHLRRVVIGEITQLLE-----LPQWLLQGSTDTLQNLLIIDCPNFMA-----LPRSLKDLEALETLFILGCPKLSS---- 458 (504)
Q Consensus 393 ~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~---- 458 (504)
.+|++|+++++. +.+ ++.++. ...+.|+.|+|++|. ++. +...+..+++|++|+|+++. ++.
T Consensus 340 ~~L~~L~Ls~N~-i~~~g~~~l~~~l~-~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~ 415 (460)
T d1z7xw1 340 RFLLELQISNNR-LEDAGVRELCQGLG-QPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGIL 415 (460)
T ss_dssp SSCCEEECCSSB-CHHHHHHHHHHHHT-STTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHH
T ss_pred cchhhhheeeec-ccCcccchhhhhhh-cccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCc-CCHHHHH
Confidence 369999999863 432 333331 245779999999994 543 44556677999999999984 442
Q ss_pred -CccCCC-CCCCcCeEeEeCCC
Q 038400 459 -LSEDMH-HVTTLKSLTIGGCP 478 (504)
Q Consensus 459 -l~~~~~-~l~~L~~L~l~~c~ 478 (504)
+...+. +.+.|+.|++.++.
T Consensus 416 ~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 416 QLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHhCCCccCEEECCCCC
Confidence 222233 34579999998876
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.7e-05 Score=65.02 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=43.6
Q ss_pred HHHhcCCCcccEEEeCCCCccccC---ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecc
Q 038400 221 ESCISKSQFLRVLNLSESAIEVCP---RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTT 296 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~ 296 (504)
...+..++.|++|++++|.++.++ ..+..+++|++|++++|. +..++. ......+|+.|++++
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-------------i~~l~~l~~l~~~~L~~L~L~~ 124 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-------------LKSERELDKIKGLKLEELWLDG 124 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-------------CCCGGGHHHHTTCCCSSCCCTT
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-------------cccchhhhhhhccccceeecCC
Confidence 444567888888888888887553 446678888888888875 444433 112334567777776
Q ss_pred cccc
Q 038400 297 KQKS 300 (504)
Q Consensus 297 ~~~~ 300 (504)
|.+.
T Consensus 125 Npl~ 128 (162)
T d1koha1 125 NSLS 128 (162)
T ss_dssp STTS
T ss_pred CCcC
Confidence 6543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=3.3e-06 Score=69.43 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=24.2
Q ss_pred ccccCCeeeeccccccccc---ccCCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCC
Q 038400 285 HLTSLRAFALTTKQKSLQE---SGIRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 345 (504)
.+++|++|++++|.+.... ..+..+++|+.|++++|. +..+++ ......+|+.|++.+|+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTST
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCC
Confidence 3444444444444443321 112334455555555432 222221 11122345555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.93 E-value=0.00058 Score=55.72 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=7.8
Q ss_pred hcCCCcccEEEeCCCCc
Q 038400 224 ISKSQFLRVLNLSESAI 240 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~ 240 (504)
+...+.|+.|++++|.+
T Consensus 40 L~~n~~L~~L~Ls~n~l 56 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAI 56 (167)
T ss_dssp HTTCSCCCEEECTTSCC
T ss_pred HhhCCccceeecccccc
Confidence 33444444455444444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.69 E-value=0.00049 Score=56.22 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=73.4
Q ss_pred HHHHhcCCCcccEEEeCCC-Ccc-----ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeee
Q 038400 220 VESCISKSQFLRVLNLSES-AIE-----VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFA 293 (504)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~ 293 (504)
+.....+.+.|+.|+|+++ .+. .+-..+....+|++|++++|. ++ ......+...+...+.|++|+
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~-------~~~~~~la~~L~~n~~L~~L~ 78 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-IS-------DSEARGLIELIETSPSLRVLN 78 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CB-------HHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cc-------hhHHHHHhhhhhhccccccee
Confidence 3344455677888888764 344 233456677788888888874 21 112344455566778888888
Q ss_pred ecccccccc-----cccCCCCCCccEEeeeCCC--Cc-----ccchhhcCCCCcccEEeeccC
Q 038400 294 LTTKQKSLQ-----ESGIRSLGSLRCLTISGCG--DL-----EHLFEEIDQLRVLRTLSIVCC 344 (504)
Q Consensus 294 l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~--~l-----~~~~~~~~~l~~L~~L~l~~~ 344 (504)
+++|.+... ...+..-++|++|+++++. .+ ..+...+..-+.|+.|+++.+
T Consensus 79 L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 79 VESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred eehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 888766532 2346677888888888753 12 123445555678888887654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.58 E-value=0.00095 Score=54.33 Aligned_cols=16 Identities=0% Similarity=0.252 Sum_probs=7.6
Q ss_pred cCCCcccEEEeCCCCc
Q 038400 225 SKSQFLRVLNLSESAI 240 (504)
Q Consensus 225 ~~~~~L~~L~l~~~~~ 240 (504)
...++|+.|++++|.+
T Consensus 43 ~~n~~L~~L~Ls~n~l 58 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRS 58 (166)
T ss_dssp TTCCSCCEEECTTSCC
T ss_pred hcCCccCeeeccCCcc
Confidence 3444455555554444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.04 E-value=0.0022 Score=52.04 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=75.7
Q ss_pred HHHHHHhcCCCcccEEEeCCC-Ccc-----ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCe
Q 038400 218 SFVESCISKSQFLRVLNLSES-AIE-----VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRA 291 (504)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~ 291 (504)
........+.+.|+.|+++++ .++ .+-..+...++|+.|++++|. ++ ......+-..+...++++.
T Consensus 7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~-------~~~~~~L~~~l~~~~~l~~ 78 (166)
T d1io0a_ 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SN-------DPVAFALAEMLKVNNTLKS 78 (166)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CC-------HHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-cc-------HHHHHHHHHHHhhcccchh
Confidence 334455566788888888874 454 234456678889999999874 22 1113344455667788888
Q ss_pred eeecccccccc-----cccCCCCCCccEEeeeCCC-Ccc-----cchhhcCCCCcccEEeeccC
Q 038400 292 FALTTKQKSLQ-----ESGIRSLGSLRCLTISGCG-DLE-----HLFEEIDQLRVLRTLSIVCC 344 (504)
Q Consensus 292 L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~-~l~-----~~~~~~~~l~~L~~L~l~~~ 344 (504)
++++++..... ...+...++|+.++++.+. .+. .+...+...++|+.|++..+
T Consensus 79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 88887765432 2456777888887776543 222 24455667788888888764
|