Citrus Sinensis ID: 038407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MDVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW
Secondary Structure (PSIPRED)
ccccccccHHccccccccEEEcccccccEEccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEccccccccccccHHHcccccccEEEccccccEEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEccEEEEEcccccccccEEEccccccccccHHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdvvahspnffyhqhdleFVRLSHlnlngefpnwllenntklesnfllnnslpglfllpihchkslmlldvsnnnlqghipvkigdflpslkyfnismnafdssiptsfgnMNFLISLdlsnnqltgeipehlamgCVDLEYLLLsnnsleghlfprnfnltnlrrlqldGNHFREILESLSKcssleglylsdnnlsgkiprwlgNLSMLqhiilpenhfegpipmefcqldslqilnisdnnisgiyhhasILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLidlsnnilsghippcldnttlhesyidtsspessetsfvdegfafYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNkligqippqignltRIQTLNLSynnltgsipstfsnlkhIKSLDlsynkldgkiplqlVELNTLAVFNVAHnnlsgkipewTAQFATfnessyegnpflcglplpkscnekaspatepktstsrgkddylidmDSFYISFTISYIIVILGIMGVLYVNPYW
Flexible Loop (DISEMBL)
MDVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTsspessetsfVDEGFAFYkekkiqetfkfttkniaytyRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKaspatepktstsrgkddyliDMDSFYISFTISYIIVILGIMGVLYVNPYW
Low Complexity Region (SEG)
MDVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLEsnfllnnslpglfllpIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDleylllsnnsleGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYLIDMDsfyisftisyiiviLGIMGVLYVNPYW
Disordered region (IsUnstruct)
*******PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI***********FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL***********************DYLIDMDSFYISFTISYIIVILGIMGVLYVNPY*
Disordered Region (DISOPRED)
MDVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI********ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP****************************DMDSFYISFTISYIIVILGIMGVLYVNPYW
Disordered Region (DISEMBL)
MDVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESY************FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCN***************GKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW
Disordered Region (DISPRO)
*DVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCN****************KDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	528	2.2.26 [Sep-21-2011]
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.886	0.387	0.334	9e-49
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.886	0.387	0.332	3e-48
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.910	0.420	0.303	6e-48
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.770	0.358	0.323	2e-44
O82318	960	Probably inactive leucine	no	no	0.903	0.496	0.288	3e-44
Q9FL28	1173	LRR receptor-like serine/	no	no	0.875	0.393	0.312	4e-44
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.768	0.339	0.312	4e-43
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.865	0.437	0.290	5e-43
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.842	0.435	0.325	7e-43
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.797	0.386	0.312	4e-42

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  195 bits (495), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 167/499 (33%), Positives = 246/499 (49%), Gaps = 31/499 (6%)

Query: 17  LEFVRLSHLNLNGEFPNWLLE-NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
           L+++ L   +  G +PN L +   T +E +   NN   G+    +    SL L+D+SNNN
Sbjct: 305 LQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNN-FSGMVPESLGECSSLELVDISNNN 363

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
             G +PV     L ++K   +S N F   +P SF N+  L +LD+S+N LTG IP  +  
Sbjct: 364 FSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGI-- 421

Query: 136 GCVD----LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGL 190
            C D    L+ L L NN  +G +     N + L  L L  N+    I  SL   S L+ L
Sbjct: 422 -CKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDL 480

Query: 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH 250
            L  N LSG+IP+ L  L  L+++IL  N   GPIP        L  +++S+N +SG   
Sbjct: 481 ILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIP 540

Query: 251 HASILSLSKDQLV-LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT---- 305
            AS+  LS   ++ L +N+  G +P +L     L  +DL+ N L+G IPP L   +    
Sbjct: 541 -ASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIA 599

Query: 306 ----LHESYIDTSSPESSETSFVDE--GFAFYKEKKIQETFKFTTKNIAYTYRGRVISYL 359
                 + Y+   +  S E         F   +++++         N    YRG      
Sbjct: 600 VALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTF 659

Query: 360 SE------LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
           +       LDLSYNKL G IP ++G +  +  LNL +N+L+G IP     LK++  LDLS
Sbjct: 660 NHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLS 719

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPK 473
           YN+ +G IP  L  L  L   ++++NNLSG IPE +A F TF +  +  N  LCG PLP 
Sbjct: 720 YNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPL 777

Query: 474 SCNEK-ASPATEPKTSTSR 491
            C+    S A + + S  R
Sbjct: 778 PCSSGPKSDANQHQKSHRR 796

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.
Solanum peruvianum (taxid: 4082)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 166/499 (33%), Positives = 245/499 (49%), Gaps = 31/499 (6%)

Query: 17  LEFVRLSHLNLNGEFPNWLLE-NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
           L+++ L   +  G +PN L +   T +E +   NN   G+    +    SL L+D+S NN
Sbjct: 305 LQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNN-FSGMVPESLGECSSLELVDISYNN 363

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
             G +PV     L ++K   +S N F   +P SF N+  L +LD+S+N LTG IP  +  
Sbjct: 364 FSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGI-- 421

Query: 136 GCVD----LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGL 190
            C D    L+ L L NN  +G +     N + L  L L  N+    I  SL   S L+ L
Sbjct: 422 -CKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDL 480

Query: 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH 250
            L  N LSG+IP+ L  L  L+++IL  N   GPIP        L  +++S+N +SG   
Sbjct: 481 ILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIP 540

Query: 251 HASILSLSKDQLV-LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT---- 305
            AS+  LS   ++ L +N+  G +P +L     L  +DL+ N L+G IPP L   +    
Sbjct: 541 -ASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIA 599

Query: 306 ----LHESYIDTSSPESSETSFVDE--GFAFYKEKKIQETFKFTTKNIAYTYRGRVISYL 359
                 + Y+   +  S E         F   +++++         N    YRG      
Sbjct: 600 VALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTF 659

Query: 360 SE------LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
           +       LDLSYNKL G IP ++G +  +  LNL +N+L+G IP     LK++  LDLS
Sbjct: 660 NHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLS 719

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPK 473
           YN+ +G IP  L  L  L   ++++NNLSG IPE +A F TF +  +  N  LCG PLP 
Sbjct: 720 YNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPI 777

Query: 474 SCNEK-ASPATEPKTSTSR 491
            C+    S A + + S  R
Sbjct: 778 PCSSGPKSDANQHQKSHRR 796

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  192 bits (488), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 237/507 (46%), Gaps = 26/507 (5%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           P  F     L+ + LSH  L G  P  + +    L++  L  N+  G+    +     L 
Sbjct: 245 PKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQ 304

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            LD+SNNN+ G  P  I     SL+   +S N      PTS      L   D S+N+ +G
Sbjct: 305 SLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSG 364

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSS 186
            IP  L  G   LE L L +N + G + P     + LR + L  N+    I   +     
Sbjct: 365 VIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQK 424

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           LE      NN++G+IP  +G L  L+ +IL  N   G IP EF    +++ ++ + N ++
Sbjct: 425 LEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLT 484

Query: 247 G-IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT 305
           G +     ILS     L L +NNF GE+P +L +   L  +DL+ N L+G IPP L    
Sbjct: 485 GEVPKDFGILS-RLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQP 543

Query: 306 LHESYIDTSSPESSETSFVDE------------GFAFYKEKKIQETFKFTTKNIAYTYRG 353
             ++     S   +  +FV               F+  + +++ +     + +    Y G
Sbjct: 544 GSKALSGLLS--GNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSG 601

Query: 354 RVISYLSE------LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407
            ++S  +       LDLSYN+L G+IP +IG +  +Q L LS+N L+G IP T   LK++
Sbjct: 602 PILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNL 661

Query: 408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
              D S N+L G+IP     L+ L   ++++N L+G IP+   Q +T   + Y  NP LC
Sbjct: 662 GVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLC 720

Query: 468 GLPLP--KSCNEKASPATEPKTSTSRG 492
           G+PLP  K+ N +    TE       G
Sbjct: 721 GVPLPECKNGNNQLPAGTEEGKRAKHG 747

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 216/464 (46%), Gaps = 57/464 (12%)

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120
           +C   L +LD+  N + G  P+ + + L SLK  ++S N F   IP   GN+  L  L L
Sbjct: 305 NCRTGLQVLDLQENRISGRFPLWLTNIL-SLKNLDVSGNLFSGEIPPDIGNLKRLEELKL 363

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE-ILE 179
           +NN LTGEIP  +   C  L+ L    NSL+G +      +  L+ L L  N F   +  
Sbjct: 364 ANNSLTGEIPVEIKQ-CGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPS 422

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
           S+     LE L L +NNL+G  P  L  L+ L  + L  N F G +P+    L +L  LN
Sbjct: 423 SMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLN 482

Query: 240 ISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
           +S N  SG    AS+ +L K   L L+  N  GEVP++L  L  +Q+I L  N  SG +P
Sbjct: 483 LSGNGFSGEIP-ASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVP 541

Query: 299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS- 357
               ++ +   Y++ SS      SF  E         I +TF F    ++ +     IS 
Sbjct: 542 EGF-SSLVSLRYVNLSS-----NSFSGE---------IPQTFGFLRLLVSLSLSDNHISG 586

Query: 358 ----------YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS----------- 396
                      L  L+L  N+L+G IP  +  L R++ L+L  NNL+G            
Sbjct: 587 SIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSL 646

Query: 397 -------------IPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNT-LAVFNVAHNNLS 442
                        IP +FS L ++  +DLS N L G+IP  L  +++ L  FNV+ NNL 
Sbjct: 647 NSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLK 706

Query: 443 GKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPATEPK 486
           G+IP         N S + GN  LCG PL + C    +   + K
Sbjct: 707 GEIPASLGSRIN-NTSEFSGNTELCGKPLNRRCESSTAEGKKKK 749

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 250/534 (46%), Gaps = 57/534 (10%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           L ++ LS+ N +G  P   L N   L+   L NN   G     I    +L +LD+  N L
Sbjct: 125 LRYLNLSNNNFSGSIPRGFLPNLYTLD---LSNNMFTGEIYNDIGVFSNLRVLDLGGNVL 181

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHL--- 133
            GH+P  +G+ L  L++  ++ N     +P   G M  L  + L  N L+GEIP  +   
Sbjct: 182 TGHVPGYLGN-LSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGL 240

Query: 134 -------------------AMGCVD-LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH 173
                              ++G +  LEY+ L  N L G + P  F+L NL  L    N 
Sbjct: 241 SSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNS 300

Query: 174 FR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
              EI E +++  SLE L+L  NNL+GKIP  + +L  L+ + L  N F G IP    + 
Sbjct: 301 LSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKH 360

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
           ++L +L++S NN++G        S    +L+L  N+ + ++P  L     L+ + L NN 
Sbjct: 361 NNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNG 420

Query: 293 LSGHIPPC-----------LDNTTLHESYIDTSSPES-----SETSFVDEGFAFYKEKKI 336
            SG +P             L N  L  +      P+      S   F  E   F + K++
Sbjct: 421 FSGKLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGELPDFSRSKRL 480

Query: 337 QETFKFTTKNIAYTYRGRVISY--LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT 394
           ++    +   I+      ++++  + +LDLS N++ G IP ++ +   +  L+LS+NN T
Sbjct: 481 KK-LDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFT 539

Query: 395 GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFAT 454
           G IPS+F+  + +  LDLS N+L G+IP  L  + +L   N++HN L G +P +T  F  
Sbjct: 540 GEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLP-FTGAFLA 598

Query: 455 FNESSYEGNPFLCGLPLPKSCNEKASPATEP-KTSTSRGKDDYLIDMDSFYISF 507
            N ++ EGN  L        C+E ++    P K    R    + + + S + +F
Sbjct: 599 INATAVEGNIDL--------CSENSASGLRPCKVVRKRSTKSWWLIITSTFAAF 644

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  179 bits (455), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 235/503 (46%), Gaps = 41/503 (8%)

Query: 1   MDVVAHSPNFFYHQHDLEFVRLSHLN--------LNGEFPN--WLLENNTKLESNFLLNN 50
           + V+  + N F  +   E  +L+ LN         +G  P+  W L+N   L+   L NN
Sbjct: 98  LQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLD---LRNN 154

Query: 51  SLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG 110
            L G     I    SL+L+    NNL G IP  +GD L  L+ F  + N    SIP S G
Sbjct: 155 LLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGD-LVHLQMFVAAGNHLTGSIPVSIG 213

Query: 111 NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170
            +  L  LDLS NQLTG+IP       ++L+ L+L+ N LEG +     N ++L +L+L 
Sbjct: 214 TLANLTDLDLSGNQLTGKIPRDFG-NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELY 272

Query: 171 GNHFR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF 229
            N    +I   L     L+ L +  N L+  IP  L  L+ L H+ L ENH  GPI  E 
Sbjct: 273 DNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEI 332

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
             L+SL++L +  NN +G +  +     +   L +  NN  GE+P  L  L  L+ +   
Sbjct: 333 GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAH 392

Query: 290 NNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQ------------ 337
           +N+L+G IP  + N T     +D S   +  T  +  GF       I             
Sbjct: 393 DNLLTGPIPSSISNCT-GLKLLDLS--HNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPD 449

Query: 338 --------ETFKFTTKNIAYTYRGRV--ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLN 387
                   ET      N+  T +  +  +  L  L +SYN L G IP +IGNL  +  L 
Sbjct: 450 DIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILY 509

Query: 388 LSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
           L  N  TG IP   SNL  ++ L +  N L+G IP ++ ++  L+V ++++N  SG+IP 
Sbjct: 510 LHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA 569

Query: 448 WTAQFATFNESSYEGNPFLCGLP 470
             ++  +    S +GN F   +P
Sbjct: 570 LFSKLESLTYLSLQGNKFNGSIP 592

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  176 bits (446), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 151/483 (31%), Positives = 224/483 (46%), Gaps = 77/483 (15%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG------------- 110
           KSL  L ++ N   G IP  +     +L   ++S N F  ++P  FG             
Sbjct: 291 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 350

Query: 111 ------------NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRN 158
                        M  L  LDLS N+ +GE+PE L      L  L LS+N+  G + P  
Sbjct: 351 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-- 408

Query: 159 FNLTN-----LRRLQLDGNHFR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQ 212
            NL       L+ L L  N F  +I  +LS CS L  L+LS N LSG IP  LG+LS L+
Sbjct: 409 -NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 467

Query: 213 HIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGE 272
            + L  N  EG IP E   + +L+ L +  N+++G          + + + L++N   GE
Sbjct: 468 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 527

Query: 273 VPIQLCQLNKLQLIDLSNNILSGHIPPCLD----------NTTLHESYIDTS----SPES 318
           +P  + +L  L ++ LSNN  SG+IP  L           NT L    I  +    S + 
Sbjct: 528 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 587

Query: 319 SETSFVDEGFAFYKEKKIQETF------------------KFTTKN----IAYTYRGRVI 356
           +      + + + K   +++                    + +T+N     +  Y G   
Sbjct: 588 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 647

Query: 357 SYLSE------LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                      LD+SYN L G IP +IG++  +  LNL +N+++GSIP    +L+ +  L
Sbjct: 648 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 707

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
           DLS NKLDG+IP  +  L  L   ++++NNLSG IPE   QF TF  + +  NP LCG P
Sbjct: 708 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYP 766

Query: 471 LPK 473
           LP+
Sbjct: 767 LPR 769

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 153/526 (29%), Positives = 237/526 (45%), Gaps = 69/526 (13%)

Query: 26  NLNGEFPNWL--LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVK 83
           NL G+ P+    L+N T L    +  N L G     I    +L  L +  N L G IP  
Sbjct: 249 NLTGKIPSSFGNLKNVTLLN---MFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPST 305

Query: 84  IGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYL 143
           +G+ + +L   ++ +N  + SIP   G M  +I L++S N+LTG +P+        LE+L
Sbjct: 306 LGN-IKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGK-LTALEWL 363

Query: 144 LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL-ESLSKCSSLEGLYLSDNNLSGKIP 202
            L +N L G + P   N T L  LQLD N+F   L +++ +   LE L L DN+  G +P
Sbjct: 364 FLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVP 423

Query: 203 RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQL 262
           + L +   L  +    N F G I   F    +L  +++S+NN  G        S      
Sbjct: 424 KSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAF 483

Query: 263 VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETS 322
           +L++N+  G +P ++  + +L  +DLS+N ++G +P  + N                   
Sbjct: 484 ILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNIN----------------- 526

Query: 323 FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTR 382
                    +  K+Q      +  I    R  +++ L  LDLS N+   +IPP + NL R
Sbjct: 527 ---------RISKLQLNGNRLSGKIPSGIR--LLTNLEYLDLSSNRFSSEIPPTLNNLPR 575

Query: 383 IQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           +  +NLS N+L  +IP   + L  ++ LDLSYN+LDG+I  Q   L  L   +++HNNLS
Sbjct: 576 LYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLS 635

Query: 443 GKIPEW-----------------------TAQFATFNESSYEGNPFLCGLPLPKSCNEKA 479
           G+IP                          A F      ++EGN  LCG     S N   
Sbjct: 636 GQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCG-----SVNTTQ 690

Query: 480 SPATEPKTSTSRG-KDDYLIDMDSFYISFTISYIIVILGIMGVLYV 524
                  TS+ +  KD  LI     YI   I   I+IL +   +++
Sbjct: 691 GLKPCSITSSKKSHKDRNLI----IYILVPIIGAIIILSVCAGIFI 732

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  175 bits (444), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 255/559 (45%), Gaps = 114/559 (20%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           L+ + L+H +L+G     LL N + LE   L +N   GLF   I+   SL +L+V  N+ 
Sbjct: 112 LKVLNLTHNSLSGSIAASLL-NLSNLEVLDLSSNDFSGLFPSLINL-PSLRVLNVYENSF 169

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
            G IP  + + LP ++  +++MN FD SIP   GN + +  L L++N L+G IP+ L   
Sbjct: 170 HGLIPASLCNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQEL-FQ 228

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR--------------------- 175
             +L  L L NN L G L  +   L+NL RL +  N F                      
Sbjct: 229 LSNLSVLALQNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSN 288

Query: 176 ----EILESLSK---------------------CSS---LEGLYLSDNNLSGKIPRWLGN 207
               E+  SLS                      CS+   L  L L+ N+ SG IP  L N
Sbjct: 289 LFNGEMPRSLSNSRSISLLSLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNLPN 348

Query: 208 LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG------IYHHAS-------I 254
              L+ I   +  F   IP  F    SL  L+ S+++I        I  H          
Sbjct: 349 CLRLKTINFAKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLT 408

Query: 255 LSLSKDQL--------------VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC 300
           L+  K++L              ++A     G VP  L     LQL+DLS N LSG IPP 
Sbjct: 409 LNFQKEELPSVPSLQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPW 468

Query: 301 L------------DNTTLHESYIDTSSPES--SETSFVDE---GFAFYKEKKIQETFKFT 343
           L            +NT + E     +S +S  S+ + V+E    F F+K+K         
Sbjct: 469 LGSLNSLFYLDLSNNTFIGEIPHSLTSLQSLVSKENAVEEPSPDFPFFKKKNT------- 521

Query: 344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
             N       +  S+   +DLSYN L G I P+ G+L ++  LNL  NNL+G+IP+  S 
Sbjct: 522 --NAGGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSG 579

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGN 463
           +  ++ LDLS+N L G IP  LV+L+ L+ F+VA+N LSG IP    QF TF  SS+EGN
Sbjct: 580 MTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPT-GVQFQTFPNSSFEGN 638

Query: 464 PFLCGLPLPKSCNEKASPA 482
             LCG        E ASP 
Sbjct: 639 QGLCG--------EHASPC 649

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 225/474 (47%), Gaps = 53/474 (11%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPN--WLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
           P    +   LE++ L++  LNG  P   +LLEN  +L   F+ NNSL G         K 
Sbjct: 189 PELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGEL---FVSNNSLGGRLHFGSSNCKK 245

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
           L+ LD+S N+ QG +P +IG+   SL    +       +IP+S G +  +  +DLS+N+L
Sbjct: 246 LVSLDLSFNDFQGGVPPEIGN-CSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRL 304

Query: 126 TGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS 185
           +G IP+ L   C  LE L L++N L+G + P                       +LSK  
Sbjct: 305 SGNIPQELG-NCSSLETLKLNDNQLQGEIPP-----------------------ALSKLK 340

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
            L+ L L  N LSG+IP  +  +  L  +++  N   G +P+E  QL  L+ L + +N  
Sbjct: 341 KLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGF 400

Query: 246 SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNT- 304
            G    +  L+ S +++ L  N F GE+P  LC   KL+L  L +N L G IP  +    
Sbjct: 401 YGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCK 460

Query: 305 TLHESYIDTSS--------PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI 356
           TL    ++ +         PES   S+V+ G   + E  I  +   + KN          
Sbjct: 461 TLERVRLEDNKLSGVLPEFPESLSLSYVNLGSNSF-EGSIPRSLG-SCKN---------- 508

Query: 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
             L  +DLS NKL G IPP++GNL  +  LNLS+N L G +PS  S    +   D+  N 
Sbjct: 509 --LLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNS 566

Query: 417 LDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
           L+G IP       +L+   ++ NN  G IP++ A+    ++     N F   +P
Sbjct: 567 LNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIP 620

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
255581263	912	serine-threonine protein kinase, plant-t	0.962	0.557	0.502	1e-141
224142481	781	predicted protein [Populus trichocarpa]	0.986	0.667	0.473	1e-132
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.969	0.349	0.449	1e-118
224142501	561	predicted protein [Populus trichocarpa]	0.946	0.891	0.468	1e-118
224112245	876	predicted protein [Populus trichocarpa]	0.905	0.545	0.440	1e-113
224114135	664	predicted protein [Populus trichocarpa]	0.967	0.769	0.419	1e-112
224073452	710	predicted protein [Populus trichocarpa]	0.971	0.722	0.428	1e-111
224073422	969	predicted protein [Populus trichocarpa]	0.975	0.531	0.426	1e-110
224123984	1016	predicted protein [Populus trichocarpa]	0.964	0.500	0.415	1e-109
224073382	1309	predicted protein [Populus trichocarpa]	0.979	0.394	0.412	1e-108

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/569 (50%), Positives = 376/569 (66%), Gaps = 61/569 (10%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           PNF YHQ++L+FV LSHL+L GEFPNWLL NNT+LE   L+NNSL G   LP+H H +L+
Sbjct: 342 PNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLL 401

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            LD+SNN++  HIP++IG FLP L+  N+S N FD SIP+SFGNMN L  LDLSNNQL+G
Sbjct: 402 ALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSG 461

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSS 186
            IPEHLA GC  L  L+LSNNSL+G +F + FNLTNL  L+LD NHF   I +SLSK S+
Sbjct: 462 SIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SA 520

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           L  + LSDN+LSG IP W+GNLS LQ++IL  N  +GPIP+EFCQL  L++L++++N++S
Sbjct: 521 LSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVS 580

Query: 247 GIY------------------------------HHASILSLSKDQLV------------- 263
           GI                               H    L LS +++              
Sbjct: 581 GILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINAL 640

Query: 264 ----LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESS 319
               L  N F+GE+P Q+C L +L LI L++N LSG IP CL    L +S  D+ +P+  
Sbjct: 641 RILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCLQ---LDQS--DSLAPDVP 695

Query: 320 ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGN 379
                   +       ++  + FTTK  +Y+Y+G+++SY+S +D S NKL G+IPP++GN
Sbjct: 696 PVPNPLNPYYL----PVRPMY-FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGN 750

Query: 380 LTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN 439
            + I +LNLSYN  TG IPSTFSNLK I+SLDLSYN L+G IP QL+EL  L+ F+VAHN
Sbjct: 751 HSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHN 810

Query: 440 NLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYLID 499
           NL GK P+ T QFATF  SSYEGNP LCGLPLPKSC E+ + ++ P+ S    + ++L D
Sbjct: 811 NLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREA-SSAPRASAMDEESNFL-D 868

Query: 500 MDSFYISFTISYIIVILGIMGVLYVNPYW 528
           M++FY SF +SY  VI+G+  VLY+NP W
Sbjct: 869 MNTFYGSFIVSYTFVIIGMFLVLYINPQW 897

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/553 (47%), Positives = 362/553 (65%), Gaps = 32/553 (5%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           P F Y+QHDL+FV LSH+ + GEFP+WLL+NNTKLE+ +L+N+SL G   LP   H +L 
Sbjct: 193 PKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLS 252

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            LD+S N++Q  IP KIG + P L++ N+S N F  SIP+S  NM+ L  LDLSNN L+G
Sbjct: 253 RLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSG 312

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL-ESLSKCSS 186
            IPE L  GC+ L  L+LSNN L+G  F R+FNL  L  L L GN    IL  SLS  S 
Sbjct: 313 NIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSR 372

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           LE L +S NNLSGKIPRW+G +S LQ++ L EN+  G +P  FC   ++  + +S N + 
Sbjct: 373 LEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMTEVYLSKNKLE 432

Query: 247 GIYHHASILSLSKDQLVLAHN------------------------NFEGEVPIQLCQLNK 282
           G    A    LS ++L L+HN                        N EG++P QLC+L K
Sbjct: 433 GSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEK 492

Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTS-SPESSETSFVDEG------FAFYKEKK 335
           L LIDLS+N L GHI PCL  T+  +   +TS +P  +     + G          ++  
Sbjct: 493 LSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPS 552

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
           + ++ +FTTK+I+Y+++G ++ Y+S +DLS N L G+IP ++GNL+ IQ LNLS+N+LTG
Sbjct: 553 MNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTG 612

Query: 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATF 455
            IP TFSNLK I+SLDLSYN L+G+IP QL++LN L+ F+VAHNNLSGK PE  AQF+TF
Sbjct: 613 PIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTF 672

Query: 456 NESSYEGNPFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVI 515
           N+S YEGNP LCG PL ++C     P+  P++ T + +++ +IDM++F ++F+++YI+V+
Sbjct: 673 NKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVL 732

Query: 516 LGIMGVLYVNPYW 528
           L I  VLY+NP W
Sbjct: 733 LTIGSVLYINPRW 745

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/585 (44%), Positives = 348/585 (59%), Gaps = 73/585 (12%)

Query: 8    PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
            P+F ++QHDL  V LS+ +L  +FP WL++NNT+LE   L NNSL G F LP   +    
Sbjct: 861  PSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTS 920

Query: 68   LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
             +D+SNN LQG +P  I   LP+L + N+S N+F+ SIP SFG M  L+ LDLSNN  TG
Sbjct: 921  AIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGMRKLLFLDLSNNLFTG 979

Query: 128  EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSL 187
             IPE LAMGC  LEYL+LS N L G +FPR  NL +LR L+LD NHF   +  LS  S L
Sbjct: 980  GIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPDLSNSSGL 1039

Query: 188  EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG 247
            E LY+S N++SGK+P W+GN+S L  +++P N  EGPIP+EFC LD+L++L++S+NN+SG
Sbjct: 1040 ERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSG 1099

Query: 248  -----------IYHH----------ASILSLSKDQ------------------------- 261
                       I+ H              + S D                          
Sbjct: 1100 SLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSGLS 1159

Query: 262  -LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSE 320
             L+L  N+F+G++P QLCQL+K+ ++DLS N LSGHIP CL+       +   S   S  
Sbjct: 1160 ILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGF--RSGKFSII 1217

Query: 321  TSFVDEGFA--FYKEKKIQ---------------ETFKFTTKNIAYTYRGRVISYLSELD 363
            + F   GF+   Y  + I+                  +FTTKN    Y+G  +  ++ +D
Sbjct: 1218 SYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGID 1277

Query: 364  LSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
            LS NKL G IPP+IGNL+++  LNLS+N LTG IP+ FS LK I+SLDLSYN L G IP 
Sbjct: 1278 LSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPG 1337

Query: 424  QLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPAT 483
            +L EL  LAVF+VA+NNLSGKIPE TAQF TF E+SY GNP+LCG  L K+C+     A 
Sbjct: 1338 ELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAE 1397

Query: 484  EPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
              +          L D D FY+SF  SY++V+LG+  VLY+N  W
Sbjct: 1398 IEEGEKG------LTDRDIFYVSFGASYVVVLLGVAAVLYINGGW 1436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142501|ref|XP_002324595.1| predicted protein [Populus trichocarpa] gi|222866029|gb|EEF03160.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/527 (46%), Positives = 339/527 (64%), Gaps = 27/527 (5%)

Query: 27  LNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD 86
           + GEFP+WLL+NNTKLE  +L+NNSL G F L  H    L  LD+S N++Q  IP++IG 
Sbjct: 1   MTGEFPSWLLQNNTKLEKLYLVNNSLSGSFQLANHSLVRLSHLDISRNHIQNQIPIEIGA 60

Query: 87  FLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLS 146
             P L + N+S N F  SIP+S  NM+ L  LDLSNN L+G IPE L   C+ L  L+LS
Sbjct: 61  CFPRLVFLNLSKNNFSGSIPSSISNMSLLEVLDLSNNGLSGNIPEQLVENCLSLGVLMLS 120

Query: 147 NNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL-ESLSKCSSLEGLYLSDNNLSGKIPRWL 205
           NN L+G LF +NFNLT L  L L GN    IL  SLS CS+L+ L +S NNLSGKIPRW+
Sbjct: 121 NNYLKGQLFWKNFNLTYLTELILRGNQLTGILPNSLSNCSALQALDVSLNNLSGKIPRWI 180

Query: 206 GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLA 265
           G +S LQ++ L EN+  G +P  FC    +  + +S N + G    A    LS  +L L+
Sbjct: 181 GYMSSLQYLDLSENNLFGSLPSNFCSSRMMIEVYLSKNKLEGSLIGALDGCLSLKRLDLS 240

Query: 266 HN------------------------NFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL 301
           HN                        N E E+P QLC+L KL+LIDLS+N L GHI PCL
Sbjct: 241 HNYFKGGIPESIGSSLELSVLLLGYNNLEAEIPRQLCELKKLRLIDLSHNNLCGHILPCL 300

Query: 302 DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361
              +  E Y +  S     T  +       ++  + ++ + T K+I+Y+++G +++ +S 
Sbjct: 301 QPRS--EWYREWDSAPGPSTMLLASAPMPLEDPSVNKSVEITIKSISYSFKGIILNLISG 358

Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
           +DLS N L G+IP ++GNL  I+ LNLS+N+LTG IP TFSNLK I++LDLSYN L+G+I
Sbjct: 359 IDLSCNNLTGEIPFELGNLNNIELLNLSHNSLTGPIPPTFSNLKKIETLDLSYNNLNGEI 418

Query: 422 PLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASP 481
           P QL+ LN+L+ F+VAHNNLSGK PE  AQF+TFN+S YEGNP LCG PL K+C     P
Sbjct: 419 PPQLLNLNSLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLAKNCTGAIPP 478

Query: 482 ATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
           +  P++ T + +++ +IDM++FY++F+++YI+V+L I  VLY+NP W
Sbjct: 479 SPLPRSQTHKKEENGVIDMEAFYVTFSVAYIMVLLAIGAVLYINPQW 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/545 (44%), Positives = 334/545 (61%), Gaps = 67/545 (12%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           P F YHQ +L+ + L+++ + G+FPNWL+ENNT L++ +L N SL G FLLP + H +L 
Sbjct: 361 PRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNLS 420

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
           +L +S N LQG IP +IG  LP L   ++S N F+ SIP+S  NM+ L  LDLSNN LTG
Sbjct: 421 ILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLTG 480

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSL 187
            IP+HL        +L+LSNNSL+G                        I +S+S CSSL
Sbjct: 481 RIPKHLTTSLCLFNFLILSNNSLQG-----------------------AIPDSMSNCSSL 517

Query: 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG 247
           + L +S+NNLS +IP W+ ++S L  + L  N+F GP+P       +L+ + +S N + G
Sbjct: 518 QLLDVSNNNLSPRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQG 577

Query: 248 I-----YHHASIL------------------SLSKDQ-LVLAHNNFEGEVPIQLCQLNKL 283
           +     Y+ +++L                  SLSK + L+L++N  EGE+PIQLC+L+ L
Sbjct: 578 LITKAFYNFSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGL 637

Query: 284 QLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT 343
            LIDLS+N LSG+I  C+ +     +  D +  E+S                 Q+  +FT
Sbjct: 638 TLIDLSHNHLSGNILSCMTSLAPFSALTDATIVETS-----------------QQYLEFT 680

Query: 344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
           TKN++  YRG ++   S +D S N   G+IPP+I NL++I+ LNLS+N+L G IP TFS 
Sbjct: 681 TKNVSLIYRGSIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSR 740

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGN 463
           LK I+SLDLS+NKLDG+IP QL EL +L +F+VAHNNLSGK P   AQFATF ES Y+ N
Sbjct: 741 LKEIESLDLSHNKLDGEIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDN 800

Query: 464 PFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLY 523
           PFLCG PLPK C     P+    TS +   +   IDM+ FY+SF I+YI+V++ I+ VLY
Sbjct: 801 PFLCGEPLPKICGASMLPS---PTSMNNEDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLY 857

Query: 524 VNPYW 528
           +NPYW
Sbjct: 858 INPYW 862

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114135|ref|XP_002332433.1| predicted protein [Populus trichocarpa] gi|222832402|gb|EEE70879.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/591 (41%), Positives = 347/591 (58%), Gaps = 80/591 (13%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           P+F Y+Q+DL  + LSH N+ G FP+WLL+NNT+LE  +L  NS  G   L  H + +++
Sbjct: 53  PDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRLEELWLSENSFVGALQLQDHPYSNMI 112

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            LD+SNNN+ G IP  I    P+L    ++ N F   IP+  GN++    LDLSNNQL+ 
Sbjct: 113 ELDISNNNMNGQIPKDICLIFPNLWSLKMAKNGFTGGIPSCLGNISSFSVLDLSNNQLSI 172

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILES--LSKCS 185
              E L      + +L LSNN+L G +    FN ++L  L L GN+F   +    L+   
Sbjct: 173 VKLEQLTA----IMFLNLSNNNLGGQIPTSVFNSSSLDVLFLSGNNFWGQISDFPLNGWK 228

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
               L LS+N  SGK+PRW  N + L+ I L +NHF+GPIP +FC+LD L  L++S NN+
Sbjct: 229 EWVVLDLSNNQFSGKVPRWFVNSTFLRSIDLSKNHFKGPIPGDFCKLDQLLYLDLSKNNL 288

Query: 246 S----------------------------GIYHHASILSLS-KDQ--------------- 261
           S                            G Y+ +S++++  +D                
Sbjct: 289 SGYIPSCFSPRTLIHVHLSENRLSGPLTHGFYNSSSLVTMDLRDNSFTGSIPNWIGNLSS 348

Query: 262 ---LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHES--------- 309
              L+L  N+F+GE+P+QLC L KL ++D+S N L G +P CL N T  ES         
Sbjct: 349 LSVLLLKANHFDGELPVQLCLLEKLNILDVSQNQLFGPLPSCLGNLTFKESSQKAFVYLR 408

Query: 310 -----------YIDTSSPESSETSF-VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS 357
                      Y +T  P   ++ + +++GF    +    E  +FTTKN+ Y+Y G++++
Sbjct: 409 YVFLTKSIKEAYYETMGPPLVDSMYNLEKGF----QLNFTEVIEFTTKNMYYSYMGKILN 464

Query: 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           Y+  +DLS N  +G IPP+ GNL+ I +LNLS+NNLTGSIP+TFSNLKHI+SLDLSYN L
Sbjct: 465 YMYGIDLSNNNFVGAIPPEFGNLSAILSLNLSHNNLTGSIPATFSNLKHIESLDLSYNNL 524

Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNE 477
           +G IP QL E+ TL VF+VAHNNLSGK PE   QF TF+ S Y+GNPFLCG PL  +C+E
Sbjct: 525 NGAIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDASCYKGNPFLCGTPLQNNCSE 584

Query: 478 KASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
           +A P  +P  +  +G DD  IDM+ FYISF + Y +V++ I  VLY+NPYW
Sbjct: 585 EAVPL-QPVHNDEQG-DDGFIDMEFFYISFGVCYTVVVMTIATVLYINPYW 633

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/590 (42%), Positives = 344/590 (58%), Gaps = 77/590 (13%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           P+F Y+Q DL  + LSH N+ G FP+WLL+NNT+LE  +L +NS  G   L  H H ++ 
Sbjct: 98  PDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMT 157

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            LD+SNNN+ G IP  I    P+L    ++ N F   IP+  GN++ L  LDLSNNQL+ 
Sbjct: 158 NLDISNNNMNGQIPKDICLIFPNLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLST 217

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILES--LSKCS 185
              E L    V    L LSNN+L G +    FN + L  L L+GN+F   +    L + +
Sbjct: 218 VKLEQLTTIWV----LKLSNNNLGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWN 273

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
               L LS+N  SG +PR   N S+L  I L  NHF+GPIP +FC+ D L+ L++S+NN+
Sbjct: 274 VWNVLDLSNNQFSGMLPRSFVNFSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNL 333

Query: 246 SGIY------HHASILSLSKDQL------------------------------------- 262
           SG           + + LSK++L                                     
Sbjct: 334 SGYIPSCFSPPQITHVHLSKNRLSGPLTYAFFNSSYLVTMDLRENSFTGSIPNWIGNLSS 393

Query: 263 ----VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS--- 315
               +L  N+F+GE+PIQLC L +L ++D+S+N LSG +P CL N T  +S  D  +   
Sbjct: 394 LSVLLLRANHFDGELPIQLCLLEQLSILDVSHNQLSGPLPSCLGNLTFKKS--DKKAILE 451

Query: 316 ------PESSETSF-----------VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISY 358
                  ES E ++           VD    F+     +E  +FTTKN+ Y Y+G+V++Y
Sbjct: 452 VAYGFISESIEKAYYEIMGPPLVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNY 511

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           +  +DLS N  IG IPP+ GNL++I ++NLS+NNLTGSIP+TFSNL HI+SLDLSYN L+
Sbjct: 512 MFGIDLSNNNFIGAIPPEFGNLSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLN 571

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEK 478
           G IP Q  E+ TL VF+VAHNNLSGK PE   QF TF+ES YEGNPFLCG PLP +C+EK
Sbjct: 572 GAIPPQFTEVTTLEVFSVAHNNLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEK 631

Query: 479 ASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
           A   ++P  +  +G DD  IDM+ FYISF + Y +V++ I  VLY+NPYW
Sbjct: 632 AV-VSQPVPNDEQG-DDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYW 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/584 (42%), Positives = 346/584 (59%), Gaps = 69/584 (11%)

Query: 5   AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHK 64
            H P+F Y+Q+DL  + LSH N+ G FP+WLL+NNT++E   L +NS  G   LP H + 
Sbjct: 364 VHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYP 423

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
           ++  LD+SNNN+   IP  I   LP+L+   +  N F   IP+  GN++ L  LDLSNNQ
Sbjct: 424 NMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQ 483

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF-REILE-SLS 182
           L+    E L      L +L LSNN+L G +    FN + L  L L+GN+F  +IL  SL 
Sbjct: 484 LSTVKLELLTT----LMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLY 539

Query: 183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF-CQLDSLQILNIS 241
           +      L LS+N  SG +PRW  N ++L+ I L +NHF+GPIP +F C+ D L+ L++S
Sbjct: 540 EQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLS 599

Query: 242 DNNISGIYHHA------SILSLSKDQLV-----------------LAHNNFEGEVPIQLC 278
           +NN+SG           + L LSK++L                  L  N+F   +P  + 
Sbjct: 600 ENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYGFYNSSSLVTMDLQDNSFTDSIPNWIG 659

Query: 279 QL--------------NKLQLIDLSNNILSGHIPPCLDNTTLHES--------------- 309
            L               +L ++D+S N LSG +P CL N T  ES               
Sbjct: 660 NLSSLSVLLLRANHFDEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISR 719

Query: 310 -----YIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDL 364
                Y +T  P   ++ ++ +GF       I+E  +FTTK ++Y Y+G+V++Y+S +DL
Sbjct: 720 SIEKTYYETMGPPLVDSVYLGKGFGL---NLIEEVIEFTTKKMSYGYKGKVLNYMSGIDL 776

Query: 365 SYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424
           S N  +G IPP+ GNL+ I +LNLS+NNLTGSIP+TFSNLK I+SLDLSYN L+G IP Q
Sbjct: 777 SNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQ 836

Query: 425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPATE 484
           L E+ TL VF+VAHNNLSGK PE   QF TF+ES YEGNPFLCG PL  +C+E+A  +++
Sbjct: 837 LTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAV-SSQ 895

Query: 485 PKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
           P  +  +G DD  +DM+ FYISF + Y +V++ I  VLY+NPYW
Sbjct: 896 PVPNDEQG-DDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYW 938

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/595 (41%), Positives = 337/595 (56%), Gaps = 86/595 (14%)

Query: 5   AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHK 64
             +P+F Y+QHDL  + LS  +  G FP+WLL+NNT+LE  FL  NS  G   L  H + 
Sbjct: 406 VETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNP 465

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
            +  +D+SNNN+ G IP  I     +L    ++ N     IP+  GN + L  LDLSNNQ
Sbjct: 466 DMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQ 525

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQL-DGNHFREILESLSK 183
           L+    E      + L +L LSNN+L G L     N + L  L L D N + +I +  S 
Sbjct: 526 LSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSP 581

Query: 184 CSSL-EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD 242
             ++   L LS+N  SG +PRW  NL+ +  I L +NHF GPIP+EFC+LD L+ L++SD
Sbjct: 582 IKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSD 641

Query: 243 NNI----------------------------SGIYHHASILSLS-KDQ------------ 261
           NN+                             G Y+ +S+++L  +D             
Sbjct: 642 NNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIGN 701

Query: 262 ------LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS 315
                 L+L  NNF+GE  +QLC L +L ++D+S N LSG +P CL N +  ESY     
Sbjct: 702 LSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESY----- 756

Query: 316 PESSETSFVDEGFAF----------------------YKEKKIQETFKFTTKNIAYTYRG 353
               E + VD GF F                      Y     +E  +FT K++ Y Y+G
Sbjct: 757 ----EKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKSMYYGYKG 812

Query: 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
           +++S++S +DLS NK  G IPP++GNL+ +  LNLS+NNLTGSIP+TFSNLK I+S DLS
Sbjct: 813 KILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIESFDLS 872

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPK 473
           YN LDG IP +L E+ TL VF+VAHNNLSG+ PE   QF TF+ESSYEGNPFLCG PL  
Sbjct: 873 YNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLCGPPLQN 932

Query: 474 SCNEKASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
           +C+E+ SP+        + +DD  IDM+ FYIS  + YI+V++GI  VLY+NPYW
Sbjct: 933 NCSEEESPSL--PMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYW 985

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 244/592 (41%), Positives = 337/592 (56%), Gaps = 75/592 (12%)

Query: 8    PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
            PNF Y+Q+ L F+ LSH N+ G FP+WLL+NNT+LE  +L  NS+ G   L  H +  + 
Sbjct: 691  PNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMT 750

Query: 68   LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
             LD+SNNN+ G IP  I    P+L    ++ N F   IP+  GNM+ L  LDLSNNQL+ 
Sbjct: 751  ELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLST 810

Query: 128  EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQL-DGNHFREILES-LSKCS 185
               E L      + +L LSNN+L G +    FN +    L L D N + +I +S L+   
Sbjct: 811  VKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWK 866

Query: 186  SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF-CQLDSLQILNISDNN 244
            +   L LS+N  SG +PRW  N + L  I L +NHFEGPI   F C+LD L+ L++S+NN
Sbjct: 867  TWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENN 926

Query: 245  ISG----------------------------IYHHASILSLS-KDQLVLAH--------- 266
            + G                             Y+ +S++++  +D               
Sbjct: 927  LFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRDNSFTGSIPNWVGNLS 986

Query: 267  ---------NNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHES-------- 309
                     N+ +GE+P+QLC L +L ++D+S N LSG +P CL+N T  ES        
Sbjct: 987  SLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQKALMNL 1046

Query: 310  -------YIDTSSPESSETSFVDEGFAF---YKEKKIQETFKFTTKNIAYTYRGRVISYL 359
                   +I+ +  E      V+  +     Y     +E  +FTTKN+ Y Y+G+++SY+
Sbjct: 1047 GGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGKILSYM 1106

Query: 360  SELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG 419
            S +DLS N  +G IPP+ GNL+ I +LNLS+NNLTGSIP+TFSNLK I+SLDLSYN  +G
Sbjct: 1107 SGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSYNNFNG 1166

Query: 420  KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEK- 478
             IP QL E+ TL VF+VAHNNLSGK PE   QF TF+ES YEGNPFLCG PL  +C+E+ 
Sbjct: 1167 DIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEV 1226

Query: 479  --ASPATEPKTSTSRGKDDYLIDMDSFYISFTISYIIVILGIMGVLYVNPYW 528
              + P           +DD  IDM+ FYISF++ Y +V++ I  VLY+NPYW
Sbjct: 1227 VLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYW 1278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.869	0.423	0.331	2.6e-57
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.863	0.467	0.351	6.8e-56
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.914	0.483	0.335	1.6e-55
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.835	0.471	0.347	7.3e-51
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.861	0.471	0.307	1.9e-47
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.924	0.537	0.309	3.2e-47
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.856	0.385	0.329	5.4e-47
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.825	0.489	0.343	1e-46
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.863	0.364	0.323	1.2e-45
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.839	0.399	0.312	2.5e-45

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 2.6e-57, P = 2.6e-57
 Identities = 162/488 (33%), Positives = 244/488 (50%)

Query:    64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
             KSL +LD+S+N L G +P+       SL+   +S N     I +   N+  L+ L L  N
Sbjct:   577 KSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGN 636

Query:   124 QLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
               TG + E L +   +            G L      ++ L  L + GN  +     L +
Sbjct:   637 NFTGSLEEGL-LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQ 695

Query:   184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
                +E + +S N+ SG IPR + N   L+ + L  N F G +P    +   L++L++ +N
Sbjct:   696 SPWVEVMDISHNSFSGSIPRNV-NFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNN 754

Query:   244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL-- 301
             N SG   +    +     L+L +N+F+  +P ++CQL+++ L+DLS+N   G IP C   
Sbjct:   755 NFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSK 814

Query:   302 --------DNTT-----LHESYIDTSSPESSETSFV--DEGFAFYKEKKIQETFKFTTKN 346
                     D T         SYI T  P     S +  D+G     + K      F TK+
Sbjct:   815 MSFGAEQNDRTMSLVADFDFSYI-TFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKS 873

Query:   347 IAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH 406
                 Y+G ++ Y+  LDLS N+L G+IP +IG+L  I++LNLS N LTGSIP + S LK 
Sbjct:   874 RYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKG 933

Query:   407 IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL 466
             ++SLDLS NKLDG IP  L +LN+L   N+++NNLSG+IP +     TF+E SY GN  L
Sbjct:   934 LESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHL 992

Query:   467 CGLPLPKSCNEKASPATEPKTSTSRGKDDY------LIDMDXXXXXXXXXXXXXXLGIMG 520
             CGLP  K+C  +  P  EP + ++  K++       +IDM               L +  
Sbjct:   993 CGLPTNKNCISQRVP--EPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFA 1050

Query:   521 VLYVNPYW 528
              LY++  W
Sbjct:  1051 FLYIDSRW 1058

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 170/484 (35%), Positives = 240/484 (49%)

Query:    66 LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
             +  LD+S NN  G +P  +     SL    +S N+F   I      +  LI L + NN  
Sbjct:   480 ISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLF 539

Query:   126 TGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNF--NLTNLRRLQLDGNHFREILE-SLS 182
             TGEI   L    V+            G L   +   + ++L  L L  N     L  SL 
Sbjct:   540 TGEIGVGLRT-LVNLSIFDASNNRLTG-LISSSIPPDSSHLIMLLLSNNLLEGTLPPSLL 597

Query:   183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD 242
                 L  L LS N LSG +P  + N      I L  N F GP+P+    L++  IL++ +
Sbjct:   598 AIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTL--LENAYILDLRN 655

Query:   243 NNISGIYHHASILSLSKD-QLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL 301
             N +SG       ++  K   L+L  NN  G +P +LC L  ++L+DLS+N L+G IPPCL
Sbjct:   656 NKLSGSI--PQFVNTGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL 713

Query:   302 DN--TTLHE-----------SYIDTSSPESSETSF-VDEGFAFYKEKKIQETFKFTTKNI 347
             ++  T L E           S+ D+   E   ++F VDE   +Y    +    +F  K  
Sbjct:   714 NHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQR 773

Query:   348 AYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407
               ++ G  + Y+  LDLS N+L G IP ++G+L++++ LNLS N L+ SIP+ FS LK I
Sbjct:   774 YDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDI 833

Query:   408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
             +SLDLSYN L G IP QL  L +LAVFNV+ NNLSG IP+   QF TFN++SY GNP LC
Sbjct:   834 ESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLC 892

Query:   468 GLPLPKSCNEKASPATEPKTSTSRGKDD---YLIDMDXXXXXXXXXXXXXXLGIMGVLYV 524
             G P  +SC  K +            +DD     IDM               +GI+ ++  
Sbjct:   893 GTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCF 952

Query:   525 NPYW 528
             +  W
Sbjct:   953 DCPW 956

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.6e-55, P = 1.6e-55
 Identities = 180/537 (33%), Positives = 263/537 (48%)

Query:     9 NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLEXXXXXXXXXXXXXXXXI--HCHKSL 66
             NF +    L  V L++    G  P+  L+N   +E                    C+ +L
Sbjct:   446 NFGWILPHLVCVNLAYNGFQGNLPS-SLDNMKSIEFLDLSHNRFHGKLPRRFLKGCY-NL 503

Query:    67 MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
              +L +S+N L G +  +  +F   L   ++  N F  +I   F ++  L  LD+SNN+LT
Sbjct:   504 TILKLSHNKLSGEVFPEAANFT-RLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLT 562

Query:   127 GEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCS 185
             G IP  +                  G LF           LQL  N    EI  SL   S
Sbjct:   563 GVIPSWIG--------------ERQG-LFA----------LQLSNNMLEGEIPTSLFNIS 597

Query:   186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
              L+ L LS N LSG IP  + ++     ++L  N+  G IP     L ++ +L++ +N +
Sbjct:   598 YLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTL--LLNVIVLDLRNNRL 655

Query:   246 SG-IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNT 304
             SG +    +  ++S   L+L  NNF G++P Q C L+ +QL+DLSNN  +G IP CL NT
Sbjct:   656 SGNLPEFINTQNISI--LLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNT 713

Query:   305 TL-----HESY-IDTSS-------PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
             +       +SY  D  S       P   E+  + + F    E   Q   +F TK+    Y
Sbjct:   714 SFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAY 773

Query:   352 RGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD 411
              G  +  L  +DLS N+L G+IP ++G L  ++ LNLS+NNL+G I  +FS LK+++SLD
Sbjct:   774 MGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLD 833

Query:   412 LSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471
             LS+N+L G IPLQL ++ +LAVFNV++NNLSG +P+   QF TF   SY GNP LCG  +
Sbjct:   834 LSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNPLLCGKSI 892

Query:   472 PKSCNEKASPATEPKTSTSRGKDDYLIDMDXXXXXXXXXXXXXXLGIMGVLYVNPYW 528
               SC   AS    P T      D+  +DM+              LGI+  L  +  W
Sbjct:   893 DISC---ASNNFHP-TDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPW 945

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 7.3e-51, P = 7.3e-51
 Identities = 165/475 (34%), Positives = 231/475 (48%)

Query:    65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
             S+M L +S+N   G    +  +F PSL    +  N F  +I     N   L  LD+SNN 
Sbjct:   464 SIMFLKLSHNKFSGRFLPRETNF-PSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNG 522

Query:   125 LTGEIPEHL-AMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
             L+G IP  L     +D            G + P    +  L  L L GN F   L S   
Sbjct:   523 LSGAIPRWLFEFPYLDYVLISNNFLE--GTIPPSLLGMPFLSFLDLSGNQFSGALPS--H 578

Query:   184 CSSLEGLY--LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
               S  G+Y  L +NN +G IP  L  L  +Q + L  N   G IP +F    S+ IL + 
Sbjct:   579 VDSELGIYMFLHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSIP-QFDDTQSINILLLK 635

Query:   242 DNNISGIYHHASILSLSKDQLV-LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC 300
              NN++G      +  LS  +L+ L+ N   G +P   C L+ L    L  + ++ +IPP 
Sbjct:   636 GNNLTGSIPR-ELCDLSNVRLLDLSDNKLNGVIPS--C-LSNLSFGRLQEDAMALNIPPS 691

Query:   301 LDNTTLH-ESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR----- 354
                T+L  E Y  T   +  E   VD   + Y+E +I    KF  K    +Y GR     
Sbjct:   692 FLQTSLEMELYKSTFLVDKIE---VDR--STYQETEI----KFAAKQRYDSYSGRSEFSE 742

Query:   355 -VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
              ++  +  +DLS N+L G IP ++G+L +++TLNLS+N+L GSIPS+FS L  ++SLDLS
Sbjct:   743 GILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLS 802

Query:   414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPK 473
             +N L G IP  L  L +LAVF+V+ NNLSG IP+   QF TF E SY GNP LCG P  +
Sbjct:   803 HNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLCGPPTSR 861

Query:   474 SCNEKASPATEPKTSTSRGKDDYLIDMDXXXXXXXXXXXXXXLGIMGVLYVNPYW 528
             SC    SP  E         D   IDM               +G++ ++  +  W
Sbjct:   862 SCETNKSPE-EADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 145/472 (30%), Positives = 223/472 (47%)

Query:    62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
             C+ S+ +L +S+N L G I  +  +F   L  F +  N F   I     ++  L  LD+S
Sbjct:   486 CY-SMAILKLSHNKLSGEIFPESTNFTNILGLF-MDNNLFTGKIGQGLRSLINLELLDMS 543

Query:   122 NNQLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL 181
             NN LTG IP  +                  G +    FN ++L+ L L  N    ++   
Sbjct:   544 NNNLTGVIPSWIGE-LPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQ 602

Query:   182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
                 +   L L DN LSG IP  L  L+ ++ + L  N F G IP EF  + ++ IL + 
Sbjct:   603 HDSRNGVVLLLQDNKLSGTIPDTL--LANVEILDLRNNRFSGKIP-EFINIQNISILLLR 659

Query:   242 DNNISGIYHHASILSLSKDQLV-LAHNNFEGEVPIQLCQLN---KLQLIDLSNNILSGHI 297
              NN +G   H  +  LS  QL+ L++N   G +P  L   +     +      +      
Sbjct:   660 GNNFTGQIPH-QLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFP 718

Query:   298 PPCLDNTTLHESYIDTSSPESSETSFVD-EGFAFYKEKKIQETFKFTTKNIAYTYRGRVI 356
                 +  +LH+ +    +      S +  +  +   +   Q   +F TK+    Y G  +
Sbjct:   719 SDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMGGNL 778

Query:   357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
               L  +DLS N+L G+IP + G L  ++ LNLS+NNL+G IP + S+++ ++S DLS+N+
Sbjct:   779 KLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNR 838

Query:   417 LDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCN 476
             L G+IP QL EL +L+VF V+HNNLSG IP+   QF TF+  SY GN  LCG P  +SCN
Sbjct:   839 LQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGR-QFNTFDAESYFGNRLLCGQPTNRSCN 897

Query:   477 EKASPATEPKTSTSRGKDDYLIDMDXXXXXXXXXXXXXXLGIMGVLYVNPYW 528
               +    +         D+ +IDM               +GI+  L  +  W
Sbjct:   898 NNSYEEADNGVEA----DESIIDMVSFYLSFAAAYVTILIGILASLSFDSPW 945

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 3.2e-47, P = 3.2e-47
 Identities = 163/526 (30%), Positives = 244/526 (46%)

Query:    15 HDLEFVRLSHLNLNGEFP-NW--LLENNTKLEXXXXXXXXXXXXXXXXIHCHKSLMLLDV 71
             H+L+ +  S  N+ G FP N+  +L N   +                 ++   ++  LD+
Sbjct:   389 HNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMY---NISFLDL 445

Query:    72 SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE 131
             S NNL G +P        SL    +S N F         N   LI L ++NN  TG+I  
Sbjct:   446 SYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGV 505

Query:   132 HLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLY 191
              L +  VD            G L P       L  L L GN     L S     ++  L+
Sbjct:   506 GL-LTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNV--LF 562

Query:   192 LSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH 250
             L +NN +G IP  +LG++ +L    L  N   G IP +F     +  L +  N+++G Y 
Sbjct:   563 LHNNNFTGPIPDTFLGSIQILD---LRNNKLSGNIP-QFVDTQDISFLLLRGNSLTG-YI 617

Query:   251 HASILSLSKDQLV-LAHNNFEGEVPIQLCQLNKLQL-IDLSNNILSGHIPPCLDNTTLHE 308
              +++   SK +L+ L+ N   G +P   C  N L   +     I + ++   L++  L  
Sbjct:   618 PSTLCEFSKMRLLDLSDNKLNGFIPS--C-FNNLSFGLARKEEITNYYVAVALESFYLG- 673

Query:   309 SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR------VISYLSEL 362
              Y         +++FV E F        +   KF TK    +Y G        ++ +  L
Sbjct:   674 FY---------KSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGL 724

Query:   363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
             DLS N+L G IP ++G+L +++ LNLS+N L+  IP +FS L+ I+SLDLSYN L G IP
Sbjct:   725 DLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIP 784

Query:   423 LQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASPA 482
              QL  L +LA+FNV++NNLSG IP+   QF TF+E+SY GNP LCG P   SC  K + +
Sbjct:   785 HQLTNLTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKN-S 842

Query:   483 TEPKTSTSRGKDDYLIDMDXXXXXXXXXXXXXXLGIMGVLYVNPYW 528
              E          +  IDM               +GI+ ++ V+  W
Sbjct:   843 EENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSW 888

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 154/468 (32%), Positives = 212/468 (45%)

Query:    17 LEFVRLSHLNLNGEFPNWLLENNTKLEXXXXXXXXXXXXXXXXIHCHKSLMLLDVSNNNL 76
             LE + L   N  GEFP   + N   L                 +    +L  L   +N L
Sbjct:   338 LEVLTLHSNNFTGEFPQ-SITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLL 396

Query:    77 QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
              G IP  I +    LK  ++S N     IP  FG MN L  + +  N  TGEIP+ +   
Sbjct:   397 TGPIPSSISN-CTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDDI-FN 453

Query:   137 CVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGLYLSDN 195
             C +            G L P    L  LR LQ+  N     I   +     L  LYL  N
Sbjct:   454 CSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSN 513

Query:   196 NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG-IYHHASI 254
               +G+IPR + NL++LQ + +  N  EGPIP E   +  L +L++S+N  SG I    S 
Sbjct:   514 GFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSK 573

Query:   255 LSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP-PCLDNTTLHESYIDT 313
             L  S   L L  N F G +P  L  L+ L   D+S+N+L+G IP   L +    + Y++ 
Sbjct:   574 LE-SLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNF 632

Query:   314 SSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG-RVISYLSELDLSYNKLIGQ 372
             S+   + T   + G    K + +QE             R  +    +  LD S N L G 
Sbjct:   633 SNNLLTGTIPKELG----KLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGH 688

Query:   373 IPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL 431
             IP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS N L G+IP  L  L+TL
Sbjct:   689 IPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTL 748

Query:   432 AVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP-KSCNEK 478
                 +A NNL G +PE +  F   N S   GN  LCG   P K C  K
Sbjct:   749 KHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPLKPCTIK 795

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.0e-46, P = 1.0e-46
 Identities = 159/463 (34%), Positives = 219/463 (47%)

Query:    22 LSHLNL-NGEF----PNWLLE-NNTKLEXXXXXXXXXXXXXXXXIHCHKSLMLLDVSNNN 75
             L HLNL N EF    P+ +    N +                    C+ SL  L +S+N 
Sbjct:   375 LRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCY-SLSWLKLSHNR 433

Query:    76 LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
               G I  K  D   SL    +  N F   IP +  N+  L  +DLSNN LTG IP  L  
Sbjct:   434 FSGPIIRKSSDET-SLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWL-- 490

Query:   136 GCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDN 195
             G               G + P  FN+  L  L L GN     L   S       L L +N
Sbjct:   491 GNFFLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNN 550

Query:   196 NLSGKIPR--WLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS 253
             NL+G IP   W G L +L    L  N   G IP+ F    S+ ++ + +NN++G      
Sbjct:   551 NLTGSIPDTLWYG-LRLLD---LRNNKLSGNIPL-FRSTPSISVVLLRENNLTGKIP-VE 604

Query:   254 ILSLSKDQLV-LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYID 312
             +  LS  +++  AHN     +P   C  N        +N  S   P      +L  ++++
Sbjct:   605 LCGLSNVRMLDFAHNRLNESIPS--CVTNLSFGSGGHSNADSDWYP-----ASLLSNFME 657

Query:   313 TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ 372
               +    E+  V + F+           +F  K     Y    ++ +  LDLS N+L G 
Sbjct:   658 IYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGN 717

Query:   373 IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLA 432
             IP ++G+L R+++LNLS N+L+GSIP +FSNL+ I+SLDLS+NKL G IP QL  L +L 
Sbjct:   718 IPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLV 777

Query:   433 VFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSC 475
             VFNV++NNLSG IP+   QF TF E SY GN  LCG P  +SC
Sbjct:   778 VFNVSYNNLSGVIPQGK-QFNTFGEKSYLGNFLLCGSPTKRSC 819

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 1.2e-45, P = 1.2e-45
 Identities = 154/476 (32%), Positives = 228/476 (47%)

Query:    18 EFVRLSHLNLNGEFPNWLLENNTKLEXXXXXXXXXXXXXXXXI-HCHKSLMLLDVSNNNL 76
             EF  L H NL G+ P  +     KLE                I +C + L  +D   N L
Sbjct:   413 EFT-LYHNNLEGKVPKEIGFLG-KLEIMYLYENRFSGEMPVEIGNCTR-LQEIDWYGNRL 469

Query:    77 QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
              G IP  IG  L  L   ++  N    +IP S GN + +  +DL++NQL+G IP      
Sbjct:   470 SGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF- 527

Query:   137 CVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
                            G+L     NL NL R+    N F   +  L   SS     +++N 
Sbjct:   528 LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENG 587

Query:   197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS 256
               G IP  LG  + L  + L +N F G IP  F ++  L +L+IS N++SGI      L 
Sbjct:   588 FEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLC 647

Query:   257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSS 315
                  + L +N   G +P  L +L  L  + LS+N   G +P  + + T +   ++D +S
Sbjct:   648 KKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNS 707

Query:   316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPP 375
                S    +    A      ++E     +  +  T  G+ +S L EL LS N L G+IP 
Sbjct:   708 LNGSIPQEIGNLQAL-NALNLEENQ--LSGPLPSTI-GK-LSKLFELRLSRNALTGEIPV 762

Query:   376 QIGNLTRIQT-LNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF 434
             +IG L  +Q+ L+LSYNN TG IPST S L  ++SLDLS+N+L G++P Q+ ++ +L   
Sbjct:   763 EIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYL 822

Query:   435 NVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKASP---ATEPKT 487
             N+++NNL GK+ +   QF+ +   ++ GN  LCG PL   CN   S    +  PKT
Sbjct:   823 NLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPL-SHCNRAGSKNQRSLSPKT 874

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 487 (176.5 bits), Expect = 2.5e-45, P = 2.5e-45
 Identities = 143/458 (31%), Positives = 215/458 (46%)

Query:    17 LEFVRLSHLNLNGEFPNWLLENNTKLEXXXXXXXXXXXXXXXXIHCHKSLMLLDVSNNNL 76
             LE V  +   LNG  P+  + N ++L                 +    +L  L +++NNL
Sbjct:   166 LETVYFTGNGLNGSIPS-NIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNL 224

Query:    77 QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
              G +PV + + L +L Y ++  N+   +IP  F +   + ++ LSNNQ TG +P  L   
Sbjct:   225 VGTLPVTLNN-LENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLG-N 282

Query:   137 CVDXXXXXXXXXXXXGHLFPRNFN-LTNLRRLQLDGNHFR-EILESLSKCSSLEGLYLSD 194
             C              G + P  F  LT L  L L GNHF   I   L KC S+  L L  
Sbjct:   283 CTSLREFGAFSCALSGPI-PSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQ 341

Query:   195 NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI 254
             N L G+IP  LG LS LQ++ L  N+  G +P+   ++ SLQ L +  NN+SG      +
Sbjct:   342 NQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELP-VDM 400

Query:   255 LSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL-DNTTLHESYID 312
               L +   L L  N+F G +P  L   + L+++DL+ N+ +GHIPP L     L    + 
Sbjct:   401 TELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLG 460

Query:   313 TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ 372
              +  E S  S  D G     E+ I E          +  +  ++ +    DLS N   G 
Sbjct:   461 YNYLEGSVPS--DLGGCSTLERLILEENNLRGGLPDFVEKQNLLFF----DLSGNNFTGP 514

Query:   373 IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLA 432
             IPP +GNL  +  + LS N L+GSIP    +L  ++ L+LS+N L G +P +L   + L+
Sbjct:   515 IPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLS 574

Query:   433 VFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
               + +HN L+G IP          + S   N F  G+P
Sbjct:   575 ELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	528
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  194 bits (494), Expect = 2e-53
 Identities = 155/471 (32%), Positives = 235/471 (49%), Gaps = 42/471 (8%)

Query: 3   VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHC 62
           +V   PN   +   LEF+ L+   L G+ P  L +  + L+  +L  N+L G     I  
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGYNNLSGEIPYEIGG 234

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
             SL  LD+  NNL G IP  +G+ L +L+Y  +  N     IP S  ++  LISLDLS+
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESL 181
           N L+GEIPE L +   +LE L L +N+  G +     +L  L+ LQL  N F  EI ++L
Sbjct: 294 NSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
            K ++L  L LS NNL+G+IP  L +   L  +IL  N  EG IP       SL+ + + 
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 242 DNNISGIYHHASILSLSKDQLV----LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI 297
           DN+ SG          +K  LV    +++NN +G +  +   +  LQ++ L+ N   G +
Sbjct: 413 DNSFSGELPS----EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468

Query: 298 PPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS 357
           P    +  L    +D S  + S                +                   +S
Sbjct: 469 PDSFGSKRLEN--LDLSRNQFSGA--------------VPRKL-------------GSLS 499

Query: 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
            L +L LS NKL G+IP ++ +  ++ +L+LS+N L+G IP++FS +  +  LDLS N+L
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCG 468
            G+IP  L  + +L   N++HN+L G +P  T  F   N S+  GN  LCG
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  173 bits (441), Expect = 2e-46
 Identities = 149/494 (30%), Positives = 215/494 (43%), Gaps = 72/494 (14%)

Query: 9   NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLML 68
           + F     L ++ LS+ N  G  P   + N   LE+  L NN L G     I    SL +
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKV 168

Query: 69  LDVSNNNLQGHI------------------------PVKIGDFLPSLKYFNISMNAFDSS 104
           LD+  N L G I                        P ++G  + SLK+  +  N     
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGE 227

Query: 105 IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL 164
           IP   G +  L  LDL  N LTG IP  L     +L+YL L  N L G + P  F+L  L
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 165 RRLQLDGNHFR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223
             L L  N    EI E + +  +LE L+L  NN +GKIP  L +L  LQ + L  N F G
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 224 PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKL 283
            IP    + ++L +L++S NN++G        S +  +L+L  N+ EGE+P  L     L
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 284 QLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT 343
           + + L +N  SG +P       L   ++D S+                   +I       
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQ--------------GRINS----- 446

Query: 344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
                   R   +  L  L L+ NK  G +P   G+  R++ L+LS N  +G++P    +
Sbjct: 447 --------RKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGS 497

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGN 463
           L  +  L LS NKL G+IP +L     L   +++HN LSG+IP   A F+          
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP---ASFSEM-------- 546

Query: 464 PFLCGLPLPKSCNE 477
           P L  L L  S N+
Sbjct: 547 PVLSQLDL--SQNQ 558

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  162 bits (412), Expect = 1e-42
 Identities = 138/430 (32%), Positives = 196/430 (45%), Gaps = 61/430 (14%)

Query: 22  LSHLNLNGEFPNW---LLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQG 78
           LS+ N + +   W      N++++ S  L   ++ G     I     +  +++SNN L G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 79  HIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCV 138
            IP  I     SL+Y N+S N F  SIP   G++  L +LDLSNN L+GEIP  +     
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FS 164

Query: 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGLYLSDNNL 197
            L+ L L  N L G +     NLT+L  L L  N    +I   L +  SL+ +YL  NNL
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSL 257
           SG+IP  +G L+ L H+ L  N+  GPIP     L +LQ L +  N +SG     SI SL
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSL 283

Query: 258 SK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSP 316
            K   L L+ N+  GE+P  + QL  L+++ L +N  +G IP  L           TS P
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-----------TSLP 332

Query: 317 ESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQ 376
                                                     L  L L  NK  G+IP  
Sbjct: 333 R-----------------------------------------LQVLQLWSNKFSGEIPKN 351

Query: 377 IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436
           +G    +  L+LS NNLTG IP    +  ++  L L  N L+G+IP  L    +L    +
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 437 AHNNLSGKIP 446
             N+ SG++P
Sbjct: 412 QDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (406), Expect = 8e-42
 Identities = 131/434 (30%), Positives = 200/434 (46%), Gaps = 61/434 (14%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           ++ + LS+  L+G  P+ +   ++ L    L NN+  G   +P     +L  LD+SNN L
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--SIPRGSIPNLETLDLSNNML 152

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
            G IP  IG F  SLK  ++  N     IP S  N+  L  L L++NQL G+IP  L   
Sbjct: 153 SGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ- 210

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
              L+++ L  N+L G                       EI   +   +SL  L L  NN
Sbjct: 211 MKSLKWIYLGYNNLSG-----------------------EIPYEIGGLTSLNHLDLVYNN 247

Query: 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS 256
           L+G IP  LGNL  LQ++ L +N   GPIP     L  L  L++SDN++SG      I  
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL---DNTTLHESYIDT 313
            + + L L  NNF G++P+ L  L +LQ++ L +N  SG IP  L   +N T+ +   + 
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 314 SSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQI 373
            + E  E      G                               L +L L  N L G+I
Sbjct: 368 LTGEIPEG-LCSSG------------------------------NLFKLILFSNSLEGEI 396

Query: 374 PPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV 433
           P  +G    ++ + L  N+ +G +PS F+ L  +  LD+S N L G+I  +  ++ +L +
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 434 FNVAHNNLSGKIPE 447
            ++A N   G +P+
Sbjct: 457 LSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (388), Expect = 1e-39
 Identities = 115/345 (33%), Positives = 164/345 (47%), Gaps = 57/345 (16%)

Query: 105 IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL 164
           I ++   + ++ +++LSNNQL+G IP+ +      L YL LSNN+  G + PR   + NL
Sbjct: 85  ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGS-IPNL 142

Query: 165 RRLQLDGNHFR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223
             L L  N    EI   +   SSL+ L L  N L GKIP  L NL+ L+ + L  N   G
Sbjct: 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG 202

Query: 224 PIPMEFCQLDSLQILNISDNNISG-IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
            IP E  Q+ SL+ + +  NN+SG I +    L+ S + L L +NN  G +P  L  L  
Sbjct: 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
           LQ + L  N LSG IPP +                                        F
Sbjct: 262 LQYLFLYQNKLSGPIPPSI----------------------------------------F 281

Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
           + +             L  LDLS N L G+IP  +  L  ++ L+L  NN TG IP   +
Sbjct: 282 SLQK------------LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 403 NLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
           +L  ++ L L  NK  G+IP  L + N L V +++ NNL+G+IPE
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  134 bits (340), Expect = 2e-33
 Identities = 95/264 (35%), Positives = 137/264 (51%), Gaps = 7/264 (2%)

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQILNISDN 243
           S +  + LS  N+SGKI   +  L  +Q I L  N   GPIP + F    SL+ LN+S+N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
           N +G     SI +L  + L L++N   GE+P  +   + L+++DL  N+L G IP  L N
Sbjct: 129 NFTGSIPRGSIPNL--ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
            T  E     S+    +     E       K I   +   +  I Y   G + S L+ LD
Sbjct: 187 LTSLEFLTLASNQLVGQIP--RELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTS-LNHLD 242

Query: 364 LSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
           L YN L G IP  +GNL  +Q L L  N L+G IP +  +L+ + SLDLS N L G+IP 
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 424 QLVELNTLAVFNVAHNNLSGKIPE 447
            +++L  L + ++  NN +GKIP 
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 74/265 (27%), Positives = 108/265 (40%), Gaps = 67/265 (25%)

Query: 191 YLSDNNLSGKIPRWLG----NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           YLS+ N S  +  W G    N S +  I L   +  G I     +L  +Q +N+S+N +S
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 247 G-IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP----PCL 301
           G I       S S                        L+ ++LSNN  +G IP    P L
Sbjct: 107 GPIPDDIFTTSSS------------------------LRYLNLSNNNFTGSIPRGSIPNL 142

Query: 302 DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361
           +   L  + +    P        D G                             S L  
Sbjct: 143 ETLDLSNNMLSGEIPN-------DIGS---------------------------FSSLKV 168

Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
           LDL  N L+G+IP  + NLT ++ L L+ N L G IP     +K +K + L YN L G+I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 422 PLQLVELNTLAVFNVAHNNLSGKIP 446
           P ++  L +L   ++ +NNL+G IP
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 7/122 (5%)

Query: 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           ++  L L    L G IP  I  L  +Q++NLS N++ G+IP +  ++  ++ LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTA----QFATFNESSYEGNPFLCGLPLPK 473
           +G IP  L +L +L + N+  N+LSG++P          A+FN   +  N  LCG+P  +
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 474 SC 475
           +C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 29/193 (15%)

Query: 264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSF 323
           L+  N  G++   + +L  +Q I+LSNN LSG IP  +  T+    Y++ S+  ++ T  
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN--NNFTGS 133

Query: 324 VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRI 383
           +  G                            I  L  LDLS N L G+IP  IG+ + +
Sbjct: 134 IPRGS---------------------------IPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 384 QTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
           + L+L  N L G IP++ +NL  ++ L L+ N+L G+IP +L ++ +L    + +NNLSG
Sbjct: 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 444 KIPEWTAQFATFN 456
           +IP       + N
Sbjct: 227 EIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 358 YLSELDLSYNKLIGQIPPQIGNLT-RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
           Y+  ++LS N+L G IP  I   +  ++ LNLS NN TGSIP     + ++++LDLS N 
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNM 151

Query: 417 LDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
           L G+IP  +   ++L V ++  N L GKIP       +    +   N  +  +P
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 167 LQLDGNHFREILES-LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI 225
           L LD    R  + + +SK   L+ + LS N++ G IP  LG+++ L+ + L  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 226 PMEFCQLDSLQILNISDNNISG 247
           P    QL SL+ILN++ N++SG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           L + N  L+G IP  I   L  L+  N+S N+   +IP S G++  L  LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHL 154
           IPE L      L  L L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 24/121 (19%)

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           ++GL L +  L G IP  +  L  LQ I L  N   G IP     + SL++L++S     
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS----- 474

Query: 247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTL 306
                              +N+F G +P  L QL  L++++L+ N LSG +P  L    L
Sbjct: 475 -------------------YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Query: 307 H 307
           H
Sbjct: 516 H 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 52/140 (37%)

Query: 260 DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESS 319
           D L L +    G +P  + +L  LQ I+LS N + G+IPP L +                
Sbjct: 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS---------------- 464

Query: 320 ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGN 379
                                               I+ L  LDLSYN   G IP  +G 
Sbjct: 465 ------------------------------------ITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 380 LTRIQTLNLSYNNLTGSIPS 399
           LT ++ LNL+ N+L+G +P+
Sbjct: 489 LTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 47  LLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIP 106
           L N  L G     I   + L  +++S N+++G+IP  +G  + SL+  ++S N+F+ SIP
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIP 483

Query: 107 TSFGNMNFLISLDLSNNQLTGEIPEHL 133
            S G +  L  L+L+ N L+G +P  L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 26/59 (44%), Positives = 32/59 (54%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L  LDLS N+L          L  ++ L+LS NNLT   P  FS L  ++SLDLS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 33/270 (12%)

Query: 38  NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS 97
            N     +  LN +     +  +    +L  LD+ NNN+   IP  IG    +LK  ++S
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLS 148

Query: 98  MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPR 157
            N    S+P+   N+  L +LDLS N L+                           L   
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLS--------------------------DLPKL 181

Query: 158 NFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILP 217
             NL+NL  L L GN   ++   +   S+LE L LS+N++  ++   L NL  L  + L 
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240

Query: 218 ENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ- 276
            N  E  +P     L +L+ L++S+N IS I    S+ +L   +L L+ N+    +P+  
Sbjct: 241 NNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNL--RELDLSGNSLSNALPLIA 297

Query: 277 LCQLNKLQLIDLSNNILSGHIPPCLDNTTL 306
           L  L    L++L   + +  +         
Sbjct: 298 LLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 27/183 (14%)

Query: 139 DLEYLLLSNNSLEG-----HLFPRNF-NLTNLRRLQLDGNHFRE----ILESLSKCSSLE 188
            L+ L LS N             +       L+ L L  N        +LESL + SSL+
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 189 GLYLSDNNLSGKIPRWLGN-LSMLQH----IILPENHFEG----PIPMEFCQLDSLQILN 239
            L L++N L  +  R L   L  L      ++L  N  EG     +         L+ LN
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171

Query: 240 ISDNNI--SGIYHHASILSLSK--DQLVLAHNNFEGEVPIQLC----QLNKLQLIDLSNN 291
           +++N I  +GI   A  L  +   + L L +N    E    L      L  L++++L +N
Sbjct: 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 292 ILS 294
            L+
Sbjct: 232 NLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 20/198 (10%)

Query: 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFN 160
               +  N+  L SLDL+ N+L   I E L +   +L  L L NN    +   +     N
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELT--NLTSLDLDNNNITDIPPLIGLLKSN 141

Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
           L     L L  N    +   L    +L+ L LS N+LS  +P+ L NLS L ++ L  N 
Sbjct: 142 LKE---LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVL----AHNNFEGEVPIQ 276
               +P E   L +L+ L++S+N+I        +LS   +   L      NN   ++P  
Sbjct: 198 IS-DLPPEIELLSALEELDLSNNSII------ELLSSLSNLKNLSGLELSNNKLEDLPES 250

Query: 277 LCQLNKLQLIDLSNNILS 294
           +  L+ L+ +DLSNN +S
Sbjct: 251 IGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 382 RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
            +++L+LS N LT      F  L ++K LDLS N L    P     L +L   +++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
           +L  LD+SNN L   IP      LP+LK  ++S N   S  P +F  +  L SLDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 125 L 125
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 111 NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170
           +++ L+SLDL +      +     +  +     L  N +           LTNL  L LD
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLD 124

Query: 171 GNHFREILESLSK-CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF 229
            N+  +I   +    S+L+ L LSDN +   +P  L NL  L+++ L  N     +P   
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLL 182

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
             L +L  L++S N IS +     I  LS  + +   NN   E+   L  L  L  ++LS
Sbjct: 183 SNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240

Query: 290 NN 291
           NN
Sbjct: 241 NN 242

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNH 173
           L SLDLSNN+LT  IP+    G  +L+ L LS N+L   + P  F  L +LR L L GN+
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 174 F 174
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
           +L+ L LS+N L+         L  L+ + L  N+     P  F  L SL+ L++S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	528
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
PLN03150	623	hypothetical protein; Provisional	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.07
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG4341	483	consensus F-box protein containing LRR [General fu	97.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
KOG4341	483	consensus F-box protein containing LRR [General fu	97.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.41
KOG4308	478	consensus LRR-containing protein [Function unknown	94.05
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.96
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.69
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.99
smart00370	26	LRR Leucine-rich repeats, outliers.	92.99
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.6
smart00370	26	LRR Leucine-rich repeats, outliers.	92.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.49
KOG4308	478	consensus LRR-containing protein [Function unknown	92.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.6
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.25
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	85.01

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.6e-50  Score=442.92  Aligned_cols=421  Identities=32%  Similarity=0.463  Sum_probs=197.6

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407           14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY   93 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (528)
                      +++|++|+|++|.+.+.+|.. ++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~  216 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKW  216 (968)
T ss_pred             cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccE
Confidence            445555555555554444444 244555555555555554444545555555555555555544444444443 445555


Q ss_pred             eeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc
Q 038407           94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH  173 (528)
Q Consensus        94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (528)
                      |++++|.+.+..|..+.++++|++|++++|.+++.+|..+ .++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            5555555544445555555555555555555444444433 244455555555555444444444444555555555554


Q ss_pred             CCccC-cccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcc-------
Q 038407          174 FREIL-ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI-------  245 (528)
Q Consensus       174 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l-------  245 (528)
                      +.... ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++       
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            44322 2344444455555555444444444444444455555544444444444444444444444444444       


Q ss_pred             -----------------cccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCcccc
Q 038407          246 -----------------SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHE  308 (528)
Q Consensus       246 -----------------~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~  308 (528)
                                       .+..+..+.....++.+++++|++++..|..+..++.|+.|++++|.+++.+|..+...+...
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence                             444333332223335555555555555555555555555555555555544443322211000


Q ss_pred             ccccCCCCCCCCccccccccccccccccccceeeeeccccc-cccccccCcccEEECCCCcCccCCChhhhccccCCEEe
Q 038407          309 SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY-TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLN  387 (528)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  387 (528)
                                                    .+.+..+.... ........+|+.|++++|++.+..|..+..+++|+.|+
T Consensus       456 ------------------------------~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  505 (968)
T PLN00113        456 ------------------------------MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK  505 (968)
T ss_pred             ------------------------------EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEE
Confidence                                          00000000000 00000123455555555555555555555555555555


Q ss_pred             CCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          388 LSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       388 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      |++|++.+.+|..+.++++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+..+.+|+.+++++|++.+
T Consensus       506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            55555555555555555555555555555555555555555555555555555555555544445555555555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-48  Score=430.90  Aligned_cols=433  Identities=33%  Similarity=0.455  Sum_probs=323.9

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      ++|.+|..++++++|++|+|++|.+.+.+|.. +.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.
T Consensus       152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  230 (968)
T PLN00113        152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY  230 (968)
T ss_pred             ccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence            45677778888888888888888877777766 46788888888888887777777777777788888877777766776


Q ss_pred             hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407           83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT  162 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  162 (528)
                      .+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..+..+.+++
T Consensus       231 ~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~  308 (968)
T PLN00113        231 EIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQ  308 (968)
T ss_pred             hHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCC
Confidence            6655 67777777777777777777777777777777777777666665553 566667777766666655555555666


Q ss_pred             CCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCcccc------------------------CCCCCCeeecC
Q 038407          163 NLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLG------------------------NLSMLQHIILP  217 (528)
Q Consensus       163 ~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~------------------------~l~~L~~L~L~  217 (528)
                      +|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|..++                        .+++|+.|+++
T Consensus       309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  388 (968)
T PLN00113        309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF  388 (968)
T ss_pred             CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence            66666666665543322 444555555555555555444444444                        44455555555


Q ss_pred             CceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC
Q 038407          218 ENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI  297 (528)
Q Consensus       218 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~  297 (528)
                      +|.+.+..|..+..+++|+.|++++|++++..+..+.....++.+++++|.+.+.++..+..+++|+.|++++|.+.+.+
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  468 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL  468 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence            55555556666778899999999999999887776655556699999999999999999999999999999999999888


Q ss_pred             CCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc--cccccccCcccEEECCCCcCccCCCh
Q 038407          298 PPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY--TYRGRVISYLSELDLSYNKLIGQIPP  375 (528)
Q Consensus       298 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~  375 (528)
                      |..+....+....+                               ..+.+..  ......+++|++|++++|.+.+.+|.
T Consensus       469 p~~~~~~~L~~L~l-------------------------------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  517 (968)
T PLN00113        469 PDSFGSKRLENLDL-------------------------------SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD  517 (968)
T ss_pred             CcccccccceEEEC-------------------------------cCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence            87553322111100                               0000000  00011256899999999999999999


Q ss_pred             hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCC
Q 038407          376 QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATF  455 (528)
Q Consensus       376 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l  455 (528)
                      .+..+++|+.|+|++|.+++.+|..|.++++|+.|||++|++++.+|..+..+++|+.+++++|++.+.+|.. ..+.++
T Consensus       518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~  596 (968)
T PLN00113        518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAI  596 (968)
T ss_pred             HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975 367788


Q ss_pred             CcCcccCCCCCCCCC
Q 038407          456 NESSYEGNPFLCGLP  470 (528)
Q Consensus       456 ~~l~l~~Np~~c~~~  470 (528)
                      ....+.|||..|+.+
T Consensus       597 ~~~~~~~n~~lc~~~  611 (968)
T PLN00113        597 NASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhhhcCCccccCCc
Confidence            888999999999854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-44  Score=339.65  Aligned_cols=399  Identities=22%  Similarity=0.236  Sum_probs=344.5

Q ss_pred             CCEEEccCCcCcccCChhhhhc--CCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407           17 LEFVRLSHLNLNGEFPNWLLEN--NTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF   94 (528)
Q Consensus        17 L~~L~Ls~~~~~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (528)
                      -+.|+.+++.+. .+...-+..  -+.-+.|++++|++....+..|.++++|+.+++.+|.++ .||..... ..+++.|
T Consensus        54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L  130 (873)
T KOG4194|consen   54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKL  130 (873)
T ss_pred             ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEE
Confidence            345677777664 221100111  134467999999999888888999999999999999998 88876655 6689999


Q ss_pred             eccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcC
Q 038407           95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF  174 (528)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  174 (528)
                      +|.+|.|+.+....+..++.|+.|||+.|.++ .+|...|..-.++++|+|++|+|+......|.++.+|..|.|+.|++
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            99999999888888999999999999999998 88887777778899999999999988888899999999999999999


Q ss_pred             CccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407          175 REILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS  253 (528)
Q Consensus       175 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (528)
                      +.+|. .|..+++|+.|+|..|++...---.|.++++|+.|.+..|+|...-..+|.++.++++|+|+.|++..+...+.
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l  289 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL  289 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence            99988 88889999999999999974435678899999999999999998778899999999999999999998877777


Q ss_pred             hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccc
Q 038407          254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE  333 (528)
Q Consensus       254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (528)
                      +....++.|+++.|.|....++....+++|++|+++.|+++..-+..+..                              
T Consensus       290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~------------------------------  339 (873)
T KOG4194|consen  290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV------------------------------  339 (873)
T ss_pred             cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH------------------------------
Confidence            77777799999999999988999999999999999999998544443322                              


Q ss_pred             cccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCc---cccCCCCCCee
Q 038407          334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS---TFSNLKHIKSL  410 (528)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L  410 (528)
                                            ++.|++|.|++|.+......+|.++++|+.|||++|.++..+.+   .|.++++|+.|
T Consensus       340 ----------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  340 ----------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ----------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence                                  55799999999999988888999999999999999999876554   58899999999


Q ss_pred             eCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       411 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      +|.+|++..+.-.+|.+++.|++|||.+|.|...-|.++.++ .|+++-+..-.++|||++.
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence            999999997777899999999999999999999999999888 9999999999999999876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-40  Score=313.72  Aligned_cols=371  Identities=24%  Similarity=0.215  Sum_probs=323.7

Q ss_pred             CCEEEccCCCCccccCcCccCC--CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEE
Q 038407           42 LESNFLLNNSLPGLFLLPIHCH--KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLD  119 (528)
Q Consensus        42 L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  119 (528)
                      -+.|+.+.+.+.......+.+.  ..-+.|++++|++. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            3567778877766544444443  34566999999999 676666666999999999999998 6677666677799999


Q ss_pred             ccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccC
Q 038407          120 LSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLS  198 (528)
Q Consensus       120 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~  198 (528)
                      |.+|.|+ .+.......++.|+.|||+.|.|+....+.|..-.++++|+|++|+|+.+.. .|..+.+|.+|.|+.|+++
T Consensus       132 L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  132 LRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             eeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            9999998 7766666678999999999999998777888888999999999999999876 8899999999999999999


Q ss_pred             ccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCccccc
Q 038407          199 GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC  278 (528)
Q Consensus       199 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~  278 (528)
                      ...+..|..+++|+.|+|..|+|.-.---.|.++++|+.|.+..|.+..+.+..|...-..++|+|+.|++...-.+++.
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            77778898999999999999999855466899999999999999999999888888877779999999999999999999


Q ss_pred             CCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCc
Q 038407          279 QLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISY  358 (528)
Q Consensus       279 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (528)
                      +++.|+.|++|+|.|...-++.+..                                                    .++
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~Wsf----------------------------------------------------tqk  318 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSF----------------------------------------------------TQK  318 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhh----------------------------------------------------ccc
Confidence            9999999999999998655544322                                                    458


Q ss_pred             ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcc---ccccCCCCCEEE
Q 038407          359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL---QLVELNTLAVFN  435 (528)
Q Consensus       359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~  435 (528)
                      |++|+|++|.++...+..|..+..|++|+|++|.+..+-..+|.++.+|++|||++|.++..+.+   .|.++++|+.|+
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            99999999999988899999999999999999999988888999999999999999999876654   578899999999


Q ss_pred             ccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      +.+|++.....+++..++.|+++++.+|+..-
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCccee
Confidence            99999998888899999999999999998754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.7e-39  Score=291.80  Aligned_cols=436  Identities=26%  Similarity=0.379  Sum_probs=260.7

Q ss_pred             chhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhc
Q 038407            8 PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDF   87 (528)
Q Consensus         8 ~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~   87 (528)
                      .+.+.++..|.+|++++|+.+ ++|+.+ +.+..++.++.++|++. .+|+.+....+|+.+++++|.+. +++.++++ 
T Consensus        61 ~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~-  135 (565)
T KOG0472|consen   61 REDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR-  135 (565)
T ss_pred             cHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH-
Confidence            345566777777777777776 666664 56777777777777765 45666666777777777777776 66666666 


Q ss_pred             CCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEE
Q 038407           88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRL  167 (528)
Q Consensus        88 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  167 (528)
                      +-.++.++..+|+++ ..|..+..+.++..+++.+|++. .+|+... .++.|++||...|-++ .+|+.++++.+|..|
T Consensus       136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELL  211 (565)
T ss_pred             Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence            446777777777766 44556666666666666666666 5555443 2666666666666665 356666666666666


Q ss_pred             EccCCcCCccCcccCCCCCCCEEEccCCccCccCCcc-ccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccc
Q 038407          168 QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS  246 (528)
Q Consensus       168 ~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  246 (528)
                      ++.+|++..+| .|.+|..|++++++.|.+. .+|.. ..+++++..||+++|++. ..|..++-+.+|+.||+++|.|+
T Consensus       212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  212 YLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             HhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence            66666666555 4555555555555555554 23322 234555555555555555 44555555555555555555555


Q ss_pred             ccccchhhhccccceeeeccCccccc--------------------------------------Cc---ccccCCCCCCE
Q 038407          247 GIYHHASILSLSKDQLVLAHNNFEGE--------------------------------------VP---IQLCQLNKLQL  285 (528)
Q Consensus       247 ~~~~~~~~~~~~~~~L~L~~n~l~~~--------------------------------------~~---~~l~~l~~L~~  285 (528)
                      +.+..  .+.+.++.|.+.+|.+...                                      .+   .......+.+.
T Consensus       289 ~Lp~s--LgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  289 SLPYS--LGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             cCCcc--cccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence            44332  1122223333333322210                                      00   11222345666


Q ss_pred             EEccCCcCCcCCCCC-CcCCccc-cccccCCCCCCCCccccccccccccccccccceeeeecccccc-ccccccCcccEE
Q 038407          286 IDLSNNILSGHIPPC-LDNTTLH-ESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT-YRGRVISYLSEL  362 (528)
Q Consensus       286 L~ls~n~l~~~~p~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L  362 (528)
                      |++++-+++ .+|.. |...... ...+......-  ... ...+...  ......+....+.+.+. .....+++|..|
T Consensus       367 L~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL--~el-Pk~L~~l--kelvT~l~lsnn~isfv~~~l~~l~kLt~L  440 (565)
T KOG0472|consen  367 LDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL--CEL-PKRLVEL--KELVTDLVLSNNKISFVPLELSQLQKLTFL  440 (565)
T ss_pred             hcccccccc-cCCHHHHHHhhhcceEEEecccchH--hhh-hhhhHHH--HHHHHHHHhhcCccccchHHHHhhhcceee
Confidence            666666665 33322 2111100 00000000000  000 0000000  00000111111111110 001226689999


Q ss_pred             ECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407          363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS  442 (528)
Q Consensus       363 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  442 (528)
                      ++++|-+- .+|..++.+..|+.|+++.|++. ..|.....+..++.+-.++|++..+.|..+.++.+|++||+.+|.+.
T Consensus       441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence            99999887 78999999999999999999998 88888888888888888899999877877999999999999999998


Q ss_pred             cCCCCCCcccCCCCcCcccCCCCC
Q 038407          443 GKIPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       443 ~~~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                       .+|..++++.+++++.++||||.
T Consensus       519 -~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 -QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -hCChhhccccceeEEEecCCccC
Confidence             67777889999999999999987

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=5e-37  Score=293.13  Aligned_cols=370  Identities=27%  Similarity=0.335  Sum_probs=244.7

Q ss_pred             CCCCCEEEccCCcCc-ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCc
Q 038407           14 QHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLK   92 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~   92 (528)
                      ++-.+-.|+++|.++ +.+|..+ ..|+.+++|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+.. +|.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhH
Confidence            444566677777776 3566664 66777777777666554 45666677777777777777766 44444544 66777


Q ss_pred             eeeccCCcCc-ccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccC
Q 038407           93 YFNISMNAFD-SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDG  171 (528)
Q Consensus        93 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  171 (528)
                      .+.++.|++. +-+|..+-++..|..|||++|++. .+|..+- .-+++-+|++++|+|..+..+.|.++..|-.|||++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            7777777664 234555666777777777777776 6776653 456677777777777754444455677777777777


Q ss_pred             CcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee-ccCcccccCCCCCCEEEcccCccccccc
Q 038407          172 NHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE-GPIPMEFCQLDSLQILNISDNNISGIYH  250 (528)
Q Consensus       172 n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (528)
                      |++..+|+.+..+..|++|+|++|++...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+.    
T Consensus       160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----  235 (1255)
T KOG0444|consen  160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----  235 (1255)
T ss_pred             chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence            777777776667777777777777664322233344555666666665433 245666667777777777766654    


Q ss_pred             chhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccc
Q 038407          251 HASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAF  330 (528)
Q Consensus       251 ~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (528)
                                           ..|+.+..+++|+.|++|+|.++. +..+.+.                           
T Consensus       236 ---------------------~vPecly~l~~LrrLNLS~N~ite-L~~~~~~---------------------------  266 (1255)
T KOG0444|consen  236 ---------------------IVPECLYKLRNLRRLNLSGNKITE-LNMTEGE---------------------------  266 (1255)
T ss_pred             ---------------------cchHHHhhhhhhheeccCcCceee-eeccHHH---------------------------
Confidence                                 446667777777777777777652 1111111                           


Q ss_pred             ccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc-ccCCccccCCCCCCe
Q 038407          331 YKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-GSIPSTFSNLKHIKS  409 (528)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~  409 (528)
                                               ..+|++|++|.|+++ .+|.+++.++.|+.|.+.+|+++ +-+|+.++.+.+|+.
T Consensus       267 -------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  267 -------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             -------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence                                     235777777777777 67777777777777777777765 346777777777777


Q ss_pred             eeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       410 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      +..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.++.+++..||.+--+|
T Consensus       321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            777777776 67777777777777777777776 567777667777777777777665443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=8.8e-36  Score=284.62  Aligned_cols=353  Identities=28%  Similarity=0.369  Sum_probs=279.1

Q ss_pred             Ccc-ccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCc-cc
Q 038407            2 DVV-AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQ-GH   79 (528)
Q Consensus         2 ~~~-~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~   79 (528)
                      |++ +.+|+.+..|++++.|.|...++. .+|+.+ +.+.+|++|.+++|++.. +...++.++.|+.+++..|++. .-
T Consensus        18 DFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsG   94 (1255)
T KOG0444|consen   18 DFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSG   94 (1255)
T ss_pred             cCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCC
Confidence            455 689999999999999999999987 899985 899999999999999874 3456778999999999999876 34


Q ss_pred             cChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCC
Q 038407           80 IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF  159 (528)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  159 (528)
                      +|..++. +..|..|+|++|++. ..|..+.+-.++..|+|++|+|. .||..+|.++..|-.||+++|++. .+|+...
T Consensus        95 iP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R  170 (1255)
T KOG0444|consen   95 IPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR  170 (1255)
T ss_pred             CCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHH
Confidence            8899998 889999999999998 77899999999999999999999 999999999999999999999998 4788899


Q ss_pred             CCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccC-ccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCE
Q 038407          160 NLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLS-GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQI  237 (528)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  237 (528)
                      .+.+|++|.|++|.+....- .+..+++|++|.+++.+-+ ..+|..+..+.+|+.+|++.|.+. .+|..+..+++|+.
T Consensus       171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lrr  249 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRR  249 (1255)
T ss_pred             HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhe
Confidence            99999999999998765422 5567788889999886432 357889999999999999999998 88999999999999


Q ss_pred             EEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCc-CCCCCCcCCccccccccCCCC
Q 038407          238 LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG-HIPPCLDNTTLHESYIDTSSP  316 (528)
Q Consensus       238 L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~~~~~~~~~~~~~~  316 (528)
                      |+|++|+|+.+...... -...++|+++.|+++ .+|.+++.+++|+.|.+.+|+++- -+|..++.+.           
T Consensus       250 LNLS~N~iteL~~~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~-----------  316 (1255)
T KOG0444|consen  250 LNLSGNKITELNMTEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI-----------  316 (1255)
T ss_pred             eccCcCceeeeeccHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------
Confidence            99999999876432111 123366777777776 566677777777777777776652 2344443322           


Q ss_pred             CCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccccc
Q 038407          317 ESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS  396 (528)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  396 (528)
                                                               .|+.+..++|.+. ..|+.++.|..|+.|+|++|++- .
T Consensus       317 -----------------------------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-T  353 (1255)
T KOG0444|consen  317 -----------------------------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-T  353 (1255)
T ss_pred             -----------------------------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-e
Confidence                                                     4555666666655 56666666666666666666665 5


Q ss_pred             CCccccCCCCCCeeeCcCCcCc
Q 038407          397 IPSTFSNLKHIKSLDLSYNKLD  418 (528)
Q Consensus       397 ~~~~~~~l~~L~~L~Ls~N~l~  418 (528)
                      .|+++.-++.|+.||+..|.-.
T Consensus       354 LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  354 LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             chhhhhhcCCcceeeccCCcCc
Confidence            5666666666666666666544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.9e-36  Score=272.93  Aligned_cols=391  Identities=27%  Similarity=0.363  Sum_probs=275.1

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .+|+.++...+++.++.+.|.+. .+|+.+ +.+-.|+.++..+|++. ..|..+..+.+|..+++.+|++. ..|....
T Consensus       105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i  180 (565)
T KOG0472|consen  105 ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI  180 (565)
T ss_pred             hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence            57888888888888888888887 677775 57888888888888876 45667777777888888888877 5666655


Q ss_pred             hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCC
Q 038407           86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLR  165 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  165 (528)
                      + ++.|++|+...|-++ .+|..++.+.+|..|++.+|++. .+|.  |.+|..|++++++.|.|+-.......+++++.
T Consensus       181 ~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~  255 (565)
T KOG0472|consen  181 A-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLL  255 (565)
T ss_pred             H-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence            5 677778877777665 56677777777777778777777 6662  34667777777777777643333344677777


Q ss_pred             EEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeecc---------------------
Q 038407          166 RLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP---------------------  224 (528)
Q Consensus       166 ~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~---------------------  224 (528)
                      .||+++|+++.+|..++-+.+|+.||+++|.++ ..|..++++ +|+.|-+.+|.+..+                     
T Consensus       256 vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~  333 (565)
T KOG0472|consen  256 VLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK  333 (565)
T ss_pred             eeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence            777777777777776666777777777777776 456666666 667666666654200                     


Q ss_pred             ----------------Cc----ccccCCCCCCEEEcccCcccccccchhhhcc-------------------------cc
Q 038407          225 ----------------IP----MEFCQLDSLQILNISDNNISGIYHHASILSL-------------------------SK  259 (528)
Q Consensus       225 ----------------~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------------------------~~  259 (528)
                                      .+    .....+.+.+.|++++-+++.++...|-..-                         ..
T Consensus       334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel  413 (565)
T KOG0472|consen  334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL  413 (565)
T ss_pred             cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH
Confidence                            00    0011223445555555555544443322221                         11


Q ss_pred             -ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccccc
Q 038407          260 -DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE  338 (528)
Q Consensus       260 -~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (528)
                       ..+.+++|.+. .+|..++.+++|+.|++++|.+. .+|..++..                                  
T Consensus       414 vT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l----------------------------------  457 (565)
T KOG0472|consen  414 VTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL----------------------------------  457 (565)
T ss_pred             HHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh----------------------------------
Confidence             33444444443 66778888999999999998776 566555443                                  


Q ss_pred             ceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407          339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD  418 (528)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  418 (528)
                                        ..|+.||++.|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+.
T Consensus       458 ------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  458 ------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             ------------------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence                              36999999999998 88998888888888888889999888888999999999999999998


Q ss_pred             ccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCC
Q 038407          419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNP  464 (528)
Q Consensus       419 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np  464 (528)
                       .+|..++++++|++|++++|++. ..++.+-...+...+++.+++
T Consensus       519 -~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr  562 (565)
T KOG0472|consen  519 -QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR  562 (565)
T ss_pred             -hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence             78889999999999999999998 333332233444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-32  Score=273.78  Aligned_cols=247  Identities=28%  Similarity=0.362  Sum_probs=151.1

Q ss_pred             CCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEccc
Q 038407          163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD  242 (528)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  242 (528)
                      +|++++++.|++..+|.++..+.+|+.++..+|++. .+|..+....+|+.|.+..|++. .+|....+++.|++|+|..
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence            455555555555555544455555555555555553 34444444555555555555554 3344445555666666666


Q ss_pred             Ccccccccchhhhccc-cceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCc
Q 038407          243 NNISGIYHHASILSLS-KDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSET  321 (528)
Q Consensus       243 n~l~~~~~~~~~~~~~-~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  321 (528)
                      |++...++..+..... ++.+..+.|++.......=...+.|+.|.+.+|.+++..-+.+.+                  
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~------------------  381 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN------------------  381 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc------------------
Confidence            6555544422211111 233444444443222112222334555555555555433222222                  


Q ss_pred             cccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccc
Q 038407          322 SFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF  401 (528)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  401 (528)
                                                        +..|+.|+|++|++.......+.++..|+.|+||+|+++ .+|+.+
T Consensus       382 ----------------------------------~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  382 ----------------------------------FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             ----------------------------------ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence                                              457899999999888555566788889999999999998 677888


Q ss_pred             cCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407          402 SNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       402 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                      ..++.|++|...+|++. ..| .+..+++|+.+|+|.|+++...-......++|+++++.||+|.
T Consensus       427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            89999999999999998 677 7888999999999999987643333324488999999999974

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=5.9e-30  Score=255.58  Aligned_cols=394  Identities=26%  Similarity=0.282  Sum_probs=276.2

Q ss_pred             ccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhh
Q 038407            5 AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKI   84 (528)
Q Consensus         5 ~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~   84 (528)
                      +++|..+..+.+|+.|+++.|.+. .+|..+ .++.+|+++.|.+|.+. ..|..+..+++|++|++|+|++. .+|.-+
T Consensus        58 ~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen   58 SSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI  133 (1081)
T ss_pred             ccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH
Confidence            566666666667777777766665 555553 56667777777666554 45566666667777777766655 333222


Q ss_pred             hhc---------------------------------------CCCCc-eeeccCCcCcccCCcccc--------------
Q 038407           85 GDF---------------------------------------LPSLK-YFNISMNAFDSSIPTSFG--------------  110 (528)
Q Consensus        85 ~~~---------------------------------------l~~L~-~L~L~~n~i~~~~~~~~~--------------  110 (528)
                      ...                                       ...++ .|+|++|.+....-..+.              
T Consensus       134 ~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~  213 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSE  213 (1081)
T ss_pred             HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccce
Confidence            110                                       01222 255555555411000000              


Q ss_pred             ---CCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCC
Q 038407          111 ---NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSL  187 (528)
Q Consensus       111 ---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L  187 (528)
                         .-++|+.|+.++|.+. ......  --.+|+++++++|+++. +|.++..+.+|+.+...+|++..++..+....+|
T Consensus       214 l~~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L  289 (1081)
T KOG0618|consen  214 LEISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSL  289 (1081)
T ss_pred             EEecCcchheeeeccCcce-eecccc--ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhH
Confidence               1123444444455444 221111  23478999999999986 5688999999999999999999998888888999


Q ss_pred             CEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCC-CCEEEcccCcccccccchhhhccccceeeecc
Q 038407          188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS-LQILNISDNNISGIYHHASILSLSKDQLVLAH  266 (528)
Q Consensus       188 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~  266 (528)
                      +.|.+..|.+. .+|....+++.|++|+|..|.+....+..+.-... |+.++.+.|++...+.........++.|++.+
T Consensus       290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            99999999998 67888888999999999999998444433433333 78888888988877644333344458999999


Q ss_pred             CcccccCcccccCCCCCCEEEccCCcCCcCCCC-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeec
Q 038407          267 NNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK  345 (528)
Q Consensus       267 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (528)
                      |.++...-..+.+..+|+.|++++|++. .+|+ ++.+                                          
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------------------------  405 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------------------------  405 (1081)
T ss_pred             Ccccccchhhhccccceeeeeecccccc-cCCHHHHhc------------------------------------------
Confidence            9999988889999999999999999997 3443 3322                                          


Q ss_pred             cccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccc
Q 038407          346 NIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQL  425 (528)
Q Consensus       346 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  425 (528)
                                ++.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-...
T Consensus       406 ----------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  406 ----------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ----------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence                      457999999999999 78899999999999999999999 777 78999999999999999985433222


Q ss_pred             ccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCC
Q 038407          426 VELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGN  463 (528)
Q Consensus       426 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~N  463 (528)
                      ..-++|++||+++|.-.......+..+..+...++.-|
T Consensus       473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            22389999999999854343443434444444443333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-29  Score=228.95  Aligned_cols=406  Identities=17%  Similarity=0.136  Sum_probs=249.9

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccC-CcCccccChhhhhcCCCCcee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSN-NNLQGHIPVKIGDFLPSLKYF   94 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~L   94 (528)
                      .-..++|..|+|+ .+|+..|+.+++||.|||++|.|+.+.|.+|.+++.|..|-+-+ |+|+ .+|...+..+..++.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            4567788888887 78888888888888888888888888888888888887766554 7888 7888888888888888


Q ss_pred             eccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc------------cCCccCCCCC
Q 038407           95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG------------HLFPRNFNLT  162 (528)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~  162 (528)
                      .+..|++.-+..+.|+.++++..|.+.+|.+. .++...|..+..++++.+..|.+..            ..+-.+++..
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            88888888777788888888888888888887 7888777788888888888776321            1122223333


Q ss_pred             CCCEEEccCCcCCccCc-ccC-CCCCCCEEEccCCccCccCC-ccccCCCCCCeeecCCceeeccCcccccCCCCCCEEE
Q 038407          163 NLRRLQLDGNHFREILE-SLS-KCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN  239 (528)
Q Consensus       163 ~L~~L~l~~n~~~~~~~-~~~-~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  239 (528)
                      -..-..+.+.++..+.+ .|. .+..+..=-.+.+...+..| ..|..+++|++|++++|+++.+-+.+|.+...++.|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            33333344444444433 111 11111111112222222323 3577888888888888888888888888888888888


Q ss_pred             cccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC-CCCCcCCccccccccCCCCCC
Q 038407          240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI-PPCLDNTTLHESYIDTSSPES  318 (528)
Q Consensus       240 L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~~~~~~~~~~~~~  318 (528)
                      |..|++..+....+.....+++|+|.+|+|+...|.+|..+..|.+|++-.|.+.-.. -.|++.+.-...  ....+..
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~~C  382 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNPRC  382 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCCCC
Confidence            8888887777666666666688888888888888888999999999998888764211 011111100000  0000000


Q ss_pred             C-Cccccccccccccccccccceeeeecc---cccccccccc---CcccE-EECCCCcCccCCChhhhccccCCEEeCCC
Q 038407          319 S-ETSFVDEGFAFYKEKKIQETFKFTTKN---IAYTYRGRVI---SYLSE-LDLSYNKLIGQIPPQIGNLTRIQTLNLSY  390 (528)
Q Consensus       319 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  390 (528)
                      . .....+..+....      .-.++..+   .........+   +-+.+ ...|+..++ .+|..+.  ..-.+|++.+
T Consensus       383 q~p~~~~~~~~~dv~------~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~g  453 (498)
T KOG4237|consen  383 QSPGFVRQIPISDVA------FGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDG  453 (498)
T ss_pred             CCCchhccccchhcc------ccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhccc
Confidence            0 0000000000000      00000000   0000000001   11111 223333333 3443332  3456778888


Q ss_pred             ccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCC
Q 038407          391 NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN  439 (528)
Q Consensus       391 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  439 (528)
                      |.++ .+|..  .+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus       454 n~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  454 NAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             chhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            8888 55654  56677 7888888887666667888888888877765

>PLN03210 Resistant to P

Probab=99.93  E-value=7.7e-24  Score=235.05  Aligned_cols=341  Identities=20%  Similarity=0.217  Sum_probs=252.6

Q ss_pred             CChhhhhcCCCCCEEEccCCCC------ccccCcCccCC-CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcc
Q 038407           31 FPNWLLENNTKLESNFLLNNSL------PGLFLLPIHCH-KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS  103 (528)
Q Consensus        31 ~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  103 (528)
                      +....|.+|++|+.|.+.++..      ...+|..+..+ .+|+.|.+.++.+. .+|..+.  ..+|+.|++++|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence            4455578899999998866532      23455666665 46999999999887 7887663  579999999999887 


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCC-cCCccCcccC
Q 038407          104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN-HFREILESLS  182 (528)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~  182 (528)
                      ..+..+..+++|+.|+++++.....+|.  +..+++|++|++++|.....+|..+..+++|+.|++++| .+..+|..+ 
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            5677788899999999998764447775  346889999999998766677888889999999999986 455665544 


Q ss_pred             CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc-------ccchhhh
Q 038407          183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI-------YHHASIL  255 (528)
Q Consensus       183 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~  255 (528)
                      .+++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|+.|.+.++....+       .+.....
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence            7889999999998655455543   457899999999987 556554 578888888877543222       1111122


Q ss_pred             ccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccc
Q 038407          256 SLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK  335 (528)
Q Consensus       256 ~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (528)
                      ...++.|++++|...+.+|..++++++|+.|++++|...+.+|... .                                
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------------------------------  823 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------------------------------  823 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--------------------------------
Confidence            2345889999998888899999999999999999986555566443 1                                


Q ss_pred             cccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCC
Q 038407          336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN  415 (528)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  415 (528)
                                          +++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++|
T Consensus       824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                346888888887654445543   357888888888887 56777888888888888885


Q ss_pred             cCcccCccccccCCCCCEEEccCCC
Q 038407          416 KLDGKIPLQLVELNTLAVFNVAHNN  440 (528)
Q Consensus       416 ~l~~~~~~~~~~l~~L~~L~ls~N~  440 (528)
                      .-...+|.....+++|+.+++++|.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCc
Confidence            4444566677778888888888875

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-27  Score=214.82  Aligned_cols=295  Identities=20%  Similarity=0.185  Sum_probs=199.4

Q ss_pred             CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccC-CcCCccCc-ccCCCCCCCEEE
Q 038407          114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDG-NHFREILE-SLSKCSSLEGLY  191 (528)
Q Consensus       114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~-~~~~l~~L~~L~  191 (528)
                      .-..++|..|+|+ .+|+..|..+++|+.|||++|.|+.+.++.|.++..+..|-+.+ |+|+.++. .|.++..++.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4667777788887 77877777778888888888888777777777777776665555 77777776 677777777777


Q ss_pred             ccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccc
Q 038407          192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG  271 (528)
Q Consensus       192 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~  271 (528)
                      +.-|++.-...+.|..++++..|.+.+|.+..+....|.++.+++.+.+..|.+-......+...      ++      .
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~------~~------a  214 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD------DL------A  214 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh------HH------h
Confidence            77777766666677777777777777777764444467777777777776665321110000000      00      0


Q ss_pred             cCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccc
Q 038407          272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY  351 (528)
Q Consensus       272 ~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (528)
                      ..|..++......-..+.+.++...-+..+.                                                 
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~-------------------------------------------------  245 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFL-------------------------------------------------  245 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhh-------------------------------------------------
Confidence            0011111111111111111111100000000                                                 


Q ss_pred             cccccCcccEEECCCCcCccCCC-hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCC
Q 038407          352 RGRVISYLSELDLSYNKLIGQIP-PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNT  430 (528)
Q Consensus       352 ~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  430 (528)
                        .....+..--.+.+...++.| ..|..+++|+.|+|++|+++++.+.+|++..++++|.|..|+|..+....|.++..
T Consensus       246 --c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~  323 (498)
T KOG4237|consen  246 --CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG  323 (498)
T ss_pred             --hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence              000111111122232333444 46999999999999999999999999999999999999999999888889999999


Q ss_pred             CCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          431 LAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       431 L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      |++|+|.+|+|+...|..+..+.+|..+.+-+|||.|+|.+.
T Consensus       324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             ceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            999999999999999999989999999999999999999876

>PLN03210 Resistant to P

Probab=99.92  E-value=2.4e-23  Score=231.17  Aligned_cols=342  Identities=18%  Similarity=0.245  Sum_probs=242.0

Q ss_pred             CcCccCCCCCCEEEccCCc------CccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 038407           57 LLPIHCHKSLMLLDVSNNN------LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP  130 (528)
Q Consensus        57 ~~~~~~~~~L~~L~ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  130 (528)
                      +.+|.++++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. ..|..| ...+|+.|++.+|.+. .++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            3457788888888886553      223456666554557888888888876 556666 4678888888888887 677


Q ss_pred             hhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc-CCccCcccCCCCCCCEEEccCCccCccCCccccCCC
Q 038407          131 EHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH-FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLS  209 (528)
Q Consensus       131 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  209 (528)
                      ..+ ..+++|+.|+++++.....+ +.+..+++|++|++++|. +..+|..+..+++|+.|++++|.....+|..+ .++
T Consensus       628 ~~~-~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGV-HSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccc-ccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            665 36888888888877543333 357778888888888864 55666677888888888888875444566544 678


Q ss_pred             CCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcc-------cccCcccccCCCC
Q 038407          210 MLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNF-------EGEVPIQLCQLNK  282 (528)
Q Consensus       210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l-------~~~~~~~l~~l~~  282 (528)
                      +|+.|++++|.....+|..   ..+|+.|++++|.+..++...  ....+.+|.+.++..       ....+......++
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccchhhhhcccc
Confidence            8888888888655455532   467888888888877654321  112235555554321       1111222334567


Q ss_pred             CCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEE
Q 038407          283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSEL  362 (528)
Q Consensus       283 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  362 (528)
                      |+.|++++|...+.+|..+..                                                    +++|+.|
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~----------------------------------------------------L~~L~~L  807 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQN----------------------------------------------------LHKLEHL  807 (1153)
T ss_pred             chheeCCCCCCccccChhhhC----------------------------------------------------CCCCCEE
Confidence            888888888776667765544                                                    4479999


Q ss_pred             ECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407          363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS  442 (528)
Q Consensus       363 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  442 (528)
                      ++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|++|++++|+-.
T Consensus       808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             ECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence            999886555677665 6899999999998766556543   468999999999998 68889999999999999996554


Q ss_pred             cCCCCCCcccCCCCcCcccCCCCC
Q 038407          443 GKIPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       443 ~~~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                      ..+|.....++.|+.+++.+|+.+
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CccCcccccccCCCeeecCCCccc
Confidence            567777778888888888887654

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=2.1e-22  Score=207.91  Aligned_cols=261  Identities=28%  Similarity=0.328  Sum_probs=137.0

Q ss_pred             CCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEc
Q 038407           66 LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLL  145 (528)
Q Consensus        66 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  145 (528)
                      -..|+++++.++ .+|..+.   ++|+.|++++|+++. +|..   .++|++|++++|+++ .+|..    .++|+.|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceeec
Confidence            445666666666 5655443   356666666666653 3321   355666666666666 55531    245666666


Q ss_pred             cCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccC
Q 038407          146 SNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI  225 (528)
Q Consensus       146 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~  225 (528)
                      ++|.++. ++.   ...+|+.|++++|+++.+|..   .++|+.|++++|.+.+ +|..   ...|+.|++++|.+++ +
T Consensus       270 s~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        270 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             cCCchhh-hhh---chhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            6666553 222   124456666666666655432   3456666666666653 2321   1245556666666652 3


Q ss_pred             cccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCc
Q 038407          226 PMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT  305 (528)
Q Consensus       226 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~  305 (528)
                      |..   ..+|+.|++++|++++++..                            .++|+.|++++|.+++ +|..     
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~LP~l----------------------------p~~L~~L~Ls~N~L~~-LP~l-----  380 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLASLPTL----------------------------PSELYKLWAYNNRLTS-LPAL-----  380 (788)
T ss_pred             ccc---ccccceEecCCCccCCCCCC----------------------------Ccccceehhhcccccc-Cccc-----
Confidence            321   13556666666665543221                            1244555555555542 2211     


Q ss_pred             cccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCE
Q 038407          306 LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQT  385 (528)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  385 (528)
                                                                        +.+|+.|++++|.+++ +|..   .++|+.
T Consensus       381 --------------------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~  406 (788)
T PRK15387        381 --------------------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKE  406 (788)
T ss_pred             --------------------------------------------------ccccceEEecCCcccC-CCCc---ccCCCE
Confidence                                                              1235566666666552 3322   245666


Q ss_pred             EeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCC
Q 038407          386 LNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE  447 (528)
Q Consensus       386 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  447 (528)
                      |++++|++++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|.
T Consensus       407 LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        407 LMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             EEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            6666666653 3432   234556666666665 4555566666666666666666655444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=8.1e-22  Score=203.61  Aligned_cols=265  Identities=24%  Similarity=0.291  Sum_probs=159.0

Q ss_pred             CCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEcc
Q 038407           42 LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS  121 (528)
Q Consensus        42 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (528)
                      -..|+++.+.++. +|..+.  ++|+.|++++|+++ .+|.    .+++|++|++++|+++. +|..   .++|+.|+++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            4455666655552 333332  35666666666665 4443    14566666666666653 2322   3456666666


Q ss_pred             CCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccC
Q 038407          122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI  201 (528)
Q Consensus       122 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  201 (528)
                      +|.++ .+|..    ..+|+.|++++|+++. +|.   ..++|+.|++++|.+..++..   ..+|+.|++++|.+++ +
T Consensus       271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC---cccccccccccCcccc-c
Confidence            66665 55441    2456666666666663 222   235677777777777665542   2346667777777763 4


Q ss_pred             CccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCC
Q 038407          202 PRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN  281 (528)
Q Consensus       202 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~  281 (528)
                      |..   ..+|+.|++++|++++ +|..   ..+|+.|++++|++..++.                         .   ..
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~-------------------------l---~~  382 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA-------------------------L---PS  382 (788)
T ss_pred             ccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc-------------------------c---cc
Confidence            431   2467788888887773 3432   3466777777777664321                         1   13


Q ss_pred             CCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccE
Q 038407          282 KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE  361 (528)
Q Consensus       282 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  361 (528)
                      +|+.|++++|.+++ +|..                                                       +++|+.
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l-------------------------------------------------------~s~L~~  406 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL-------------------------------------------------------PSELKE  406 (788)
T ss_pred             ccceEEecCCcccC-CCCc-------------------------------------------------------ccCCCE
Confidence            56777777777662 3321                                                       225777


Q ss_pred             EECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccccc
Q 038407          362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE  427 (528)
Q Consensus       362 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  427 (528)
                      |++++|.+++ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+..
T Consensus       407 LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        407 LMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             EEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            8888888773 5543   246777888888887 56777888888888888888888776665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=3.3e-20  Score=192.97  Aligned_cols=139  Identities=23%  Similarity=0.379  Sum_probs=61.7

Q ss_pred             CceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407           91 LKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD  170 (528)
Q Consensus        91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  170 (528)
                      ...|+++++.++. +|..+.  +.|+.|++++|+++ .+|..++   .+|++|++++|.++. +|..+  ..+|+.|+++
T Consensus       180 ~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence            3444444444442 233221  24455555555554 4444332   245555555555442 22222  1245555555


Q ss_pred             CCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccc
Q 038407          171 GNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG  247 (528)
Q Consensus       171 ~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (528)
                      +|.+..+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|+++.
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            555554444332  34555555555554 2343332  345555555555552 232221  245555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=5.3e-20  Score=191.50  Aligned_cols=247  Identities=25%  Similarity=0.365  Sum_probs=158.4

Q ss_pred             CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEE
Q 038407           64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYL  143 (528)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  143 (528)
                      .+...|+++++.++ .+|..+   .++++.|++++|+++. +|..+.  .+|++|++++|.++ .+|..+.   .+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence            34567777777777 666554   3467778888887773 444332  46788888888777 6776553   367788


Q ss_pred             EccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407          144 LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       144 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                      ++++|.+.. +|..+.  .+|+.|++++|.+..+|..+.  ++|+.|++++|.++. +|..+.  +.|+.|++++|.++.
T Consensus       247 ~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        247 ELSINRITE-LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             ECcCCccCc-CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            888887773 444432  467888888888877765443  478888888887773 444332  467888888888874


Q ss_pred             cCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcC
Q 038407          224 PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN  303 (528)
Q Consensus       224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~  303 (528)
                       +|..+  .++|+.|++++|.+++++.                         .+  .++|+.|++++|+++ .+|..+  
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt~LP~-------------------------~l--~~sL~~L~Ls~N~L~-~LP~~l--  365 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALTSLPA-------------------------SL--PPELQVLDVSKNQIT-VLPETL--  365 (754)
T ss_pred             -CCccc--cccceeccccCCccccCCh-------------------------hh--cCcccEEECCCCCCC-cCChhh--
Confidence             44333  2577888888877765421                         11  146777777777665 233221  


Q ss_pred             CccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccC
Q 038407          304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRI  383 (528)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  383 (528)
                                                                          ++.|+.|++++|.++ .+|..+.  ..|
T Consensus       366 ----------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL  390 (754)
T PRK15370        366 ----------------------------------------------------PPTITTLDVSRNALT-NLPENLP--AAL  390 (754)
T ss_pred             ----------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHH
Confidence                                                                235777777777776 4455443  357


Q ss_pred             CEEeCCCccccccCCccc----cCCCCCCeeeCcCCcCc
Q 038407          384 QTLNLSYNNLTGSIPSTF----SNLKHIKSLDLSYNKLD  418 (528)
Q Consensus       384 ~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~  418 (528)
                      +.|++++|+++ .+|..+    ..++.+..|++.+|.++
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77777777776 344332    34467777777777776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=2.1e-20  Score=181.12  Aligned_cols=108  Identities=22%  Similarity=0.311  Sum_probs=67.3

Q ss_pred             cccEEECCCCcCccC----CChhhhccccCCEEeCCCccccccCCcccc-----CCCCCCeeeCcCCcCcc----cCccc
Q 038407          358 YLSELDLSYNKLIGQ----IPPQIGNLTRIQTLNLSYNNLTGSIPSTFS-----NLKHIKSLDLSYNKLDG----KIPLQ  424 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~  424 (528)
                      +|+.|++++|.+.+.    ++..+..+++|+.|++++|.+++.....+.     ..+.|++|++++|.++.    .+...
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  273 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV  273 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence            577777777766532    223445567777888887777642222221     23678888888888762    22344


Q ss_pred             cccCCCCCEEEccCCCCccC----CCCCCccc-CCCCcCcccCCCC
Q 038407          425 LVELNTLAVFNVAHNNLSGK----IPEWTAQF-ATFNESSYEGNPF  465 (528)
Q Consensus       425 ~~~l~~L~~L~ls~N~l~~~----~p~~~~~~-~~l~~l~l~~Np~  465 (528)
                      +..+++|+++++++|.++..    ....+... +.++.+++.+|||
T Consensus       274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            55567788888888888744    33333334 5677788888876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=3.5e-19  Score=172.52  Aligned_cols=225  Identities=25%  Similarity=0.218  Sum_probs=96.0

Q ss_pred             EEccCCcCcccCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCcc------ccChhhhhcCC
Q 038407           20 VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQG------HIPVKIGDFLP   89 (528)
Q Consensus        20 L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~~l~   89 (528)
                      |+|+++.+++.-...+|..++.|++|++++|.+++.    ++..+...+++++++++++.+.+      .++..+.. ++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence            444445444322223344555555555555555322    22233344455555555554431      11112222 44


Q ss_pred             CCceeeccCCcCcccCCccccCCCC---CCEEEccCCcccc----cCChhhhhCC-CCCCEEEccCCcCccc----CCcc
Q 038407           90 SLKYFNISMNAFDSSIPTSFGNMNF---LISLDLSNNQLTG----EIPEHLAMGC-VDLEYLLLSNNSLEGH----LFPR  157 (528)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~  157 (528)
                      +|+.|++++|.+....+..+..+.+   |++|++++|++++    .+...+ ..+ ++|++|++++|.+++.    ....
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            5555555555554333333333333   5555555555441    111111 123 4555555555555421    1122


Q ss_pred             CCCCCCCCEEEccCCcCCc-----cCcccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCccc
Q 038407          158 NFNLTNLRRLQLDGNHFRE-----ILESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPME  228 (528)
Q Consensus       158 ~~~l~~L~~L~l~~n~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~  228 (528)
                      +..+++|++|++++|.+..     ++..+..+++|++|++++|.+.+.    +...+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            3344455555555555442     111233334555555555554322    1222334455555555555554321111


Q ss_pred             cc-----CCCCCCEEEcccCccc
Q 038407          229 FC-----QLDSLQILNISDNNIS  246 (528)
Q Consensus       229 l~-----~l~~L~~L~L~~n~l~  246 (528)
                      +.     ..+.|++|++++|.++
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCC
Confidence            11     1245555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1e-18  Score=141.59  Aligned_cols=163  Identities=29%  Similarity=0.447  Sum_probs=107.2

Q ss_pred             CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407           62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE  141 (528)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  141 (528)
                      .+.+.+.|.+|+|+++ .+|..+.. +.+|+.|++++|+|+ ..|..+..+++|+.|+++-|++. .+|.++ +.++.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhh
Confidence            3445555666666666 55555555 556666666666665 45556666666666666666665 556554 3566666


Q ss_pred             EEEccCCcCcc-cCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCce
Q 038407          142 YLLLSNNSLEG-HLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH  220 (528)
Q Consensus       142 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  220 (528)
                      .||+.+|.+.+ ..|..|+.+..|+.|++++|.+.-+|+.++.+.+|+.|.+..|.+- ..|..++.+..|++|.+.+|+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            66666666553 3556666777777777777777777777777777777777777776 567777777778888888887


Q ss_pred             eeccCcccccC
Q 038407          221 FEGPIPMEFCQ  231 (528)
Q Consensus       221 i~~~~~~~l~~  231 (528)
                      ++ .+|..++.
T Consensus       185 l~-vlppel~~  194 (264)
T KOG0617|consen  185 LT-VLPPELAN  194 (264)
T ss_pred             ee-ecChhhhh
Confidence            77 44544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-18  Score=141.07  Aligned_cols=67  Identities=33%  Similarity=0.576  Sum_probs=57.5

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccccc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE  427 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  427 (528)
                      .|+.|++++|.+. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|..++.
T Consensus       128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            4777888888887 88889999999999999999988 78888999999999999999998 56655554

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=1.4e-15  Score=158.17  Aligned_cols=119  Identities=34%  Similarity=0.624  Sum_probs=109.3

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCccc-CCCCcCcccCCCCCCCCCCCCCCC
Q 038407          438 HNNLSGKIPEWTAQF-ATFNESSYEGNPFLCGLPLPKSCN  476 (528)
Q Consensus       438 ~N~l~~~~p~~~~~~-~~l~~l~l~~Np~~c~~~l~~~c~  476 (528)
                      +|++++.+|..+... ..+..+++.+|+..|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999877553 456788999999999987655664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=4.4e-14  Score=135.59  Aligned_cols=177  Identities=27%  Similarity=0.400  Sum_probs=156.9

Q ss_pred             CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407           62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE  141 (528)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  141 (528)
                      .+.--...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..+.++..|.+++++.|+++ .+|..++ .+ -|+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLK  146 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cce
Confidence            3445567899999998 89988877 678999999999987 77899999999999999999999 9999886 34 499


Q ss_pred             EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee
Q 038407          142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF  221 (528)
Q Consensus       142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  221 (528)
                      .|.+++|+++. +|..+.....|..|+.+.|.+..+++.++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++
T Consensus       147 vli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  147 VLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             eEEEecCcccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            99999999994 778888899999999999999999999999999999999999998 677777755 499999999999


Q ss_pred             eccCcccccCCCCCCEEEcccCccccc
Q 038407          222 EGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      + .+|-.|..|+.|++|-|.+|.+..-
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCCCC
Confidence            9 7899999999999999999999754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=9e-14  Score=133.48  Aligned_cols=191  Identities=25%  Similarity=0.454  Sum_probs=112.4

Q ss_pred             CEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccC
Q 038407          188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHN  267 (528)
Q Consensus       188 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n  267 (528)
                      ...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|++++++.|+++..+..  ...+.++.+.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChh--hhcCcceeEEEecC
Confidence            44555566555 45555555555666666666665 4555666666666666666666544322  22233344444555


Q ss_pred             cccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccc
Q 038407          268 NFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI  347 (528)
Q Consensus       268 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (528)
                      +++ .+|..++..++|..||.+.|.+. .+|..++.                                            
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~--------------------------------------------  187 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY--------------------------------------------  187 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh--------------------------------------------
Confidence            544 44555666777777777777765 34443333                                            


Q ss_pred             cccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccccc
Q 038407          348 AYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE  427 (528)
Q Consensus       348 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  427 (528)
                              +.+|+.|.+..|++. .+|..+..| .|..||++.|++. .+|-.|..+++|++|-|.+|.++ ..|..+..
T Consensus       188 --------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  188 --------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             --------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence                    225666677777766 456666644 3777777777777 66667777777777777777776 44544433


Q ss_pred             ---CCCCCEEEccCCC
Q 038407          428 ---LNTLAVFNVAHNN  440 (528)
Q Consensus       428 ---l~~L~~L~ls~N~  440 (528)
                         ..=.++|+..-++
T Consensus       256 kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  256 KGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ccceeeeeeecchhcc
Confidence               2234566666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=7e-12  Score=124.94  Aligned_cols=102  Identities=33%  Similarity=0.432  Sum_probs=47.1

Q ss_pred             EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCC-CCCEEEccCCccCccCCccccCCCCCCeeecCCce
Q 038407          142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS-SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH  220 (528)
Q Consensus       142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  220 (528)
                      .++...+.+.. .......++.++.|++.+|.+..+++...... +|+.|++++|.+. .++..+..++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            45555554421 12222333455555555555555555444442 5555555555554 233344445555555555555


Q ss_pred             eeccCcccccCCCCCCEEEcccCccc
Q 038407          221 FEGPIPMEFCQLDSLQILNISDNNIS  246 (528)
Q Consensus       221 i~~~~~~~l~~l~~L~~L~L~~n~l~  246 (528)
                      ++ .++......+.|+.|++++|++.
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc
Confidence            54 22322223444444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=5.5e-12  Score=107.49  Aligned_cols=108  Identities=30%  Similarity=0.383  Sum_probs=27.7

Q ss_pred             CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407           63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  142 (528)
                      ..++++|+|++|.++ .+ ..+...+.+|+.|++++|.|+..  +.+..+++|++|++++|+++ .+...+...+++|++
T Consensus        18 ~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            344555666666555 33 23332245666666666666533  23555666666666666666 554443334566666


Q ss_pred             EEccCCcCccc-CCccCCCCCCCCEEEccCCcCC
Q 038407          143 LLLSNNSLEGH-LFPRNFNLTNLRRLQLDGNHFR  175 (528)
Q Consensus       143 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~  175 (528)
                      |++++|+|... ....+..+++|+.|++.+|.+.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666531 1122334445555555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.24  E-value=2.5e-12  Score=116.71  Aligned_cols=235  Identities=18%  Similarity=0.115  Sum_probs=144.0

Q ss_pred             hhhhCCCCCCEEEccCCcCcccCChh---hhhcCCCCCEEEccCCCCcc----ccCc-------CccCCCCCCEEEccCC
Q 038407            9 NFFYHQHDLEFVRLSHLNLNGEFPNW---LLENNTKLESNFLLNNSLPG----LFLL-------PIHCHKSLMLLDVSNN   74 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~~~~~~~~~~---~~~~l~~L~~L~L~~n~~~~----~~~~-------~~~~~~~L~~L~ls~n   74 (528)
                      +.+..+..+++++||+|.+.......   .+.+.+.|+.-+++.- ++|    .+|+       ++.++++|++||||+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            45567788899999999886433322   2456677777777652 222    2332       3456778888899888


Q ss_pred             cCccccChhhh---hcCCCCceeeccCCcCcccC-------------CccccCCCCCCEEEccCCcccccCCh----hhh
Q 038407           75 NLQGHIPVKIG---DFLPSLKYFNISMNAFDSSI-------------PTSFGNMNFLISLDLSNNQLTGEIPE----HLA  134 (528)
Q Consensus        75 ~l~~~~~~~~~---~~l~~L~~L~L~~n~i~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~  134 (528)
                      .+....+..+.   +.+..|++|.|.+|.+...-             ......-+.|+++...+|++. ..+.    ..+
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~  181 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAF  181 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHH
Confidence            87644443322   33678888888888775211             112334467788888877775 3332    234


Q ss_pred             hCCCCCCEEEccCCcCccc----CCccCCCCCCCCEEEccCCcCCccCc-----ccCCCCCCCEEEccCCccCccCCccc
Q 038407          135 MGCVDLEYLLLSNNSLEGH----LFPRNFNLTNLRRLQLDGNHFREILE-----SLSKCSSLEGLYLSDNNLSGKIPRWL  205 (528)
Q Consensus       135 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l  205 (528)
                      ...+.|+.+.++.|.|...    ....+..+++|+.|||++|.++.-..     .++.+++|++|++++|.+......+|
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            4556777777777776532    12334567777777777777664322     56666777777777777654333322


Q ss_pred             -----cCCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccCcc
Q 038407          206 -----GNLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDNNI  245 (528)
Q Consensus       206 -----~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l  245 (528)
                           ...|.|+.|.+.+|.|+..    +...+...+.|+.|+|++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 2256777777777776532    122234456677777777766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.8e-12  Score=119.62  Aligned_cols=213  Identities=21%  Similarity=0.110  Sum_probs=148.5

Q ss_pred             hhhhCCCCCCEEEccCCcCcccCCh-hhhhcCCCCCEEEccCCCCccc--cCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            9 NFFYHQHDLEFVRLSHLNLNGEFPN-WLLENNTKLESNFLLNNSLPGL--FLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .--.++++|+.+.|.++.+. ..+. .....|++++.|||++|-+...  +......+++|+.|+++.|++.-.......
T Consensus       115 akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  115 AKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             HHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence            33467788999999988875 3332 3467899999999999977653  334456789999999999987633333333


Q ss_pred             hcCCCCceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCccc-CCccCCCCCC
Q 038407           86 DFLPSLKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH-LFPRNFNLTN  163 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~  163 (528)
                      ..+++|+.|.++.|.++...- .....+++|+.|++..|... .+...-..-+..|++|||++|.+-.. .......++.
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            347789999999998873221 23446789999999998422 11111122356799999999987642 2244567889


Q ss_pred             CCEEEccCCcCCccCc--c-----cCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceeec
Q 038407          164 LRRLQLDGNHFREILE--S-----LSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       164 L~~L~l~~n~~~~~~~--~-----~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                      |+.|+++.+.+.++..  .     ....++|++|++..|++... .-..+..+++|+.|.+..|.++.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            9999999998887632  1     34578999999999988532 22345567788888888887763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=2e-11  Score=104.04  Aligned_cols=128  Identities=23%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             hCCCCCCEEEccCCcCcccCChhhhh-cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCC
Q 038407           12 YHQHDLEFVRLSHLNLNGEFPNWLLE-NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPS   90 (528)
Q Consensus        12 ~~~~~L~~L~Ls~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~   90 (528)
                      .+..++++|+|.+|.|+ .+..  ++ .+.+|+.|+|++|.++..  +.+..+++|+.|++++|+++ .+...+...+|+
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             ---------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccc-cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            34456778888888776 3432  23 467788888888877754  34666777888888888877 565444444678


Q ss_pred             CceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEcc
Q 038407           91 LKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLS  146 (528)
Q Consensus        91 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~  146 (528)
                      |++|++++|+|..... ..+..+++|+.|++.+|.++ .-+.   .+...+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence            8888888887764221 44556777777777777776 3332   223356666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.5e-12  Score=119.98  Aligned_cols=212  Identities=22%  Similarity=0.191  Sum_probs=147.8

Q ss_pred             hcCCCCCEEEccCCCCccccC-cCccCCCCCCEEEccCCcCccc-cChhhhhcCCCCceeeccCCcCcccCCc-cccCCC
Q 038407           37 ENNTKLESNFLLNNSLPGLFL-LPIHCHKSLMLLDVSNNNLQGH-IPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMN  113 (528)
Q Consensus        37 ~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~  113 (528)
                      +++.+|+++.|.++.+..... .....|++++.||||+|-+... ....+.+.+|+|+.|+++.|++...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            567889999999887754322 3566789999999999976622 1234556689999999999988632221 122568


Q ss_pred             CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEE
Q 038407          114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLY  191 (528)
Q Consensus       114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~  191 (528)
                      .|+.|.++.|.++..--..+...+|+|+.|+++.|............+..|+.|+|++|.+...+.  ....++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            899999999998754333444578999999999985332333344467789999999998887763  667888899999


Q ss_pred             ccCCccCcc-CCcc-----ccCCCCCCeeecCCceeecc-CcccccCCCCCCEEEcccCccccc
Q 038407          192 LSDNNLSGK-IPRW-----LGNLSMLQHIILPENHFEGP-IPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       192 L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      ++.+.+... .|+.     ...+++|+.|++..|+|.+. .-..+..+++|+.|.+..|.+...
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            998887643 2222     34567888888888888532 112344566777777777776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=2.3e-11  Score=121.23  Aligned_cols=175  Identities=37%  Similarity=0.530  Sum_probs=74.4

Q ss_pred             CCCCEEEccCCcCccccChhhhhcCC-CCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407           64 KSLMLLDVSNNNLQGHIPVKIGDFLP-SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  142 (528)
                      +.++.|++.+|.++ .++..... .+ +|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|.... ..+.|+.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence            44444444444444 34333332 21 4444444444444 22233444444444444444444 4443321 2344444


Q ss_pred             EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee
Q 038407          143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE  222 (528)
Q Consensus       143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  222 (528)
                      |++++|+++. ++........|+++.+++|.+...+..+..+.++..+.+.+|++. ..+..+..++.++.|++++|.++
T Consensus       191 L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         191 LDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            4444444442 222222333344444444443333333444444444444444443 12333444444444444444444


Q ss_pred             ccCcccccCCCCCCEEEcccCcccc
Q 038407          223 GPIPMEFCQLDSLQILNISDNNISG  247 (528)
Q Consensus       223 ~~~~~~l~~l~~L~~L~L~~n~l~~  247 (528)
                      ....  +..+.+++.|++++|.+..
T Consensus       269 ~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         269 SISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccc--ccccCccCEEeccCccccc
Confidence            2211  4444444444444444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.18  E-value=1.3e-12  Score=118.62  Aligned_cols=238  Identities=22%  Similarity=0.222  Sum_probs=131.0

Q ss_pred             hhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCc---CccccChhhh------hcCCCCceeeccCCcCc
Q 038407           36 LENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNN---LQGHIPVKIG------DFLPSLKYFNISMNAFD  102 (528)
Q Consensus        36 ~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~------~~l~~L~~L~L~~n~i~  102 (528)
                      ...+..++.++|++|.+...    +...+...++|+..++|+-.   +..++|..+.      ..+|+|++|+||+|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            35678889999999988643    33456677889999888642   2234444322      12568888888888876


Q ss_pred             ccCCcc----ccCCCCCCEEEccCCcccccCChhh-h------------hCCCCCCEEEccCCcCcccC----CccCCCC
Q 038407          103 SSIPTS----FGNMNFLISLDLSNNQLTGEIPEHL-A------------MGCVDLEYLLLSNNSLEGHL----FPRNFNL  161 (528)
Q Consensus       103 ~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~-~------------~~l~~L~~L~l~~n~l~~~~----~~~~~~l  161 (528)
                      ...+..    +..+..|++|.|.+|.+. ...... .            ..-+.|+++...+|++....    ...|...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            444433    345677888888888775 221111 0            12234566666666554311    1123344


Q ss_pred             CCCCEEEccCCcCCccC-----cccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCcccc---
Q 038407          162 TNLRRLQLDGNHFREIL-----ESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPMEF---  229 (528)
Q Consensus       162 ~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l---  229 (528)
                      +.|+.+.+++|.|..-.     ..+..+++|+.||+.+|.++..    +...+..+++|++|++++|.+......+|   
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            55555555555543211     1445555555555555555421    22234445555555555555543222111   


Q ss_pred             --cCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCC
Q 038407          230 --CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS  294 (528)
Q Consensus       230 --~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  294 (528)
                        ...++|+.|.+.+|.|+.....                    .+...+...+.|..|++++|++.
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~--------------------~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAAL--------------------ALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHH--------------------HHHHHHhcchhhHHhcCCccccc
Confidence              1234555555555555432111                    22234555788999999999883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=4.7e-12  Score=112.46  Aligned_cols=85  Identities=29%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccC-ccccccCCCCCEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI-PLQLVELNTLAVF  434 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L  434 (528)
                      +++|+.||||+|.++ .+..+-..+-+++.|+|++|.+...  +.++.+-+|..||+++|+|.... -..++++|-|+++
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            445666666666665 3344445566667777777766632  34556666667777777665321 1245566666666


Q ss_pred             EccCCCCcc
Q 038407          435 NVAHNNLSG  443 (528)
Q Consensus       435 ~ls~N~l~~  443 (528)
                      .+.+|++.+
T Consensus       405 ~L~~NPl~~  413 (490)
T KOG1259|consen  405 RLTGNPLAG  413 (490)
T ss_pred             hhcCCCccc
Confidence            666666663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=3.8e-12  Score=113.05  Aligned_cols=129  Identities=29%  Similarity=0.328  Sum_probs=83.8

Q ss_pred             CCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEE
Q 038407           89 PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQ  168 (528)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  168 (528)
                      ..|++++|++|.|+ .+..+.+-.+.++.|++++|.+. .+.. + ..+++|+.||+++|.++. +..+-..+.++++|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-AELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-hhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            35677777777776 44556666677777777777776 4444 2 246777777777777663 233334666777777


Q ss_pred             ccCCcCCccCcccCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceeec
Q 038407          169 LDGNHFREILESLSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       169 l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                      +++|.+..+ ..+..+.+|..||+++|+|... -...++++|.|+++.|.+|.+.+
T Consensus       359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            777776654 2455666777777777776532 12356677777777777777763

>PLN03150 hypothetical protein; Provisional

Probab=99.08  E-value=2.5e-10  Score=119.07  Aligned_cols=91  Identities=36%  Similarity=0.617  Sum_probs=82.1

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC-CCCCEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL-NTLAVF  434 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L  434 (528)
                      +++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+..+ .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            3489999999999999999999999999999999999999999999999999999999999999999988764 467899


Q ss_pred             EccCCCCccCCC
Q 038407          435 NVAHNNLSGKIP  446 (528)
Q Consensus       435 ~ls~N~l~~~~p  446 (528)
                      ++.+|...+-.|
T Consensus       521 ~~~~N~~lc~~p  532 (623)
T PLN03150        521 NFTDNAGLCGIP  532 (623)
T ss_pred             EecCCccccCCC
Confidence            999998654333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=7.1e-11  Score=82.81  Aligned_cols=61  Identities=38%  Similarity=0.574  Sum_probs=41.1

Q ss_pred             ccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCC
Q 038407          381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL  441 (528)
Q Consensus       381 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  441 (528)
                      ++|++|++++|+++...++.|.++++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566667777766666556666677777777777777666666667777777777776654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=3.8e-10  Score=120.29  Aligned_cols=106  Identities=24%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             CCCEEEccCCcC-cccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407           16 DLEFVRLSHLNL-NGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF   94 (528)
Q Consensus        16 ~L~~L~Ls~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (528)
                      +|++|-+.+|.. ...++..+|..++.|+.|||++|.--+.+|..++.+.+|++|+++++.+. .+|..+.+ +..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~-Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGN-LKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHH-HHhhhee
Confidence            455555555531 12444444555555555555555444455555555555555555555555 55555555 4555555


Q ss_pred             eccCCcCcccCCccccCCCCCCEEEccCC
Q 038407           95 NISMNAFDSSIPTSFGNMNFLISLDLSNN  123 (528)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  123 (528)
                      ++..+.-...+|.....+++|++|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            55554433333444444555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.1e-10  Score=80.39  Aligned_cols=61  Identities=49%  Similarity=0.650  Sum_probs=57.5

Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcC
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL  417 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  417 (528)
                      |+|++|++++|++....+..|.++++|++|++++|+++...++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4699999999999987778999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=1e-10  Score=116.76  Aligned_cols=86  Identities=26%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCccc---Cccc-cccCCCCCEE
Q 038407          359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK---IPLQ-LVELNTLAVF  434 (528)
Q Consensus       359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L  434 (528)
                      |+.+++++|.+. ..+..+..+..+..|++.+|++...  ..+...+.+..+....|++...   .... ....+.++.+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            677777777776 3335566677788888888877743  3355667777777777776521   1111 4455677788


Q ss_pred             EccCCCCccCCCC
Q 038407          435 NVAHNNLSGKIPE  447 (528)
Q Consensus       435 ~ls~N~l~~~~p~  447 (528)
                      .+.+|.+....+.
T Consensus       311 ~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  311 TLELNPIRKISSL  323 (414)
T ss_pred             ccccCcccccccc
Confidence            8888877665553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.95  E-value=6e-11  Score=118.37  Aligned_cols=264  Identities=27%  Similarity=0.274  Sum_probs=164.1

Q ss_pred             CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEcc
Q 038407          114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLS  193 (528)
Q Consensus       114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~  193 (528)
                      .++.++..++... ..... ...+..++.+.+..|.+.. ....+..+++|+.|++.+|.+..+...+..+++|++|+++
T Consensus        50 ~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecc
Confidence            3455555555433 22111 1235566677777777663 2334566777778888888777776556677777777777


Q ss_pred             CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407          194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV  273 (528)
Q Consensus       194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~  273 (528)
                      +|.|+..  ..+..++.|+.|++++|.|+..  ..+..++.|+.+++++|.+..+...                      
T Consensus       127 ~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~----------------------  180 (414)
T KOG0531|consen  127 FNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND----------------------  180 (414)
T ss_pred             ccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh----------------------
Confidence            7777643  2345566677777777777633  3345567777777777776644211                      


Q ss_pred             cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccc
Q 038407          274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG  353 (528)
Q Consensus       274 ~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (528)
                       . ...+.+++.+++.+|.+...-.  +..                                                  
T Consensus       181 -~-~~~~~~l~~l~l~~n~i~~i~~--~~~--------------------------------------------------  206 (414)
T KOG0531|consen  181 -E-LSELISLEELDLGGNSIREIEG--LDL--------------------------------------------------  206 (414)
T ss_pred             -h-hhhccchHHHhccCCchhcccc--hHH--------------------------------------------------
Confidence             1 3567777888888887652111  000                                                  


Q ss_pred             cccCcccEEECCCCcCccCCChhhhccc--cCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCC
Q 038407          354 RVISYLSELDLSYNKLIGQIPPQIGNLT--RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL  431 (528)
Q Consensus       354 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  431 (528)
                        ...+..+++..|.+....+  +..+.  .|+.+++++|.+. ..+..+..++.+..|++++|++...  ..+...+.+
T Consensus       207 --~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~  279 (414)
T KOG0531|consen  207 --LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKL  279 (414)
T ss_pred             --HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchH
Confidence              1134445777777763322  22233  3899999999998 4446678889999999999999743  235566777


Q ss_pred             CEEEccCCCCccC---CCCC-CcccCCCCcCcccCCCCCC
Q 038407          432 AVFNVAHNNLSGK---IPEW-TAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       432 ~~L~ls~N~l~~~---~p~~-~~~~~~l~~l~l~~Np~~c  467 (528)
                      ..+....|++...   .... ....+++....+.+||..-
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  280 SELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             HHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            7888888887632   1111 3355677777788887654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=6.5e-10  Score=118.56  Aligned_cols=204  Identities=22%  Similarity=0.183  Sum_probs=136.5

Q ss_pred             CCCceeeccCCcCcccCCccccCCCCCCEEEccCCc--ccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCE
Q 038407           89 PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ--LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR  166 (528)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  166 (528)
                      ...+...+-+|.+. ..+.... .++|++|-+..|.  +. .++..+|..++.|++||+++|.--+.+|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            46677777777665 3333332 3478888888886  55 788888888999999999988766678888889999999


Q ss_pred             EEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee--eccCcccccCCCCCCEEEcccCc
Q 038407          167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF--EGPIPMEFCQLDSLQILNISDNN  244 (528)
Q Consensus       167 L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i--~~~~~~~l~~l~~L~~L~L~~n~  244 (528)
                      |+++++.+..+|..+..+..|.+|++..+.....++.....+++|++|.+..-..  +...-..+..+++|+.+......
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            9999999999999999999999999998866556677777799999998866542  22223344555666666554433


Q ss_pred             ccccccchhhhcccc--ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC
Q 038407          245 ISGIYHHASILSLSK--DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH  296 (528)
Q Consensus       245 l~~~~~~~~~~~~~~--~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  296 (528)
                      ............+..  ..+.+.++... ..+..+..+.+|+.|.+.++.+...
T Consensus       680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  680 VLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             hHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence            210011001111111  22232222222 3445677889999999999987643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.3e-10  Score=103.43  Aligned_cols=181  Identities=20%  Similarity=0.116  Sum_probs=108.9

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhcCCCCce
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDFLPSLKY   93 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~   93 (528)
                      ++|++||||+..++..--..+++.|.+|+.|.|.++.+.+.+...+..-.+|+.|+++.+. ++.....-+...++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3688888888877654444557788888888888888887777777777888888888753 443223344555778888


Q ss_pred             eeccCCcCcccCCcc-ccC-CCCCCEEEccCCccc--ccCChhhhhCCCCCCEEEccCCc-CcccCCccCCCCCCCCEEE
Q 038407           94 FNISMNAFDSSIPTS-FGN-MNFLISLDLSNNQLT--GEIPEHLAMGCVDLEYLLLSNNS-LEGHLFPRNFNLTNLRRLQ  168 (528)
Q Consensus        94 L~L~~n~i~~~~~~~-~~~-l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  168 (528)
                      |++++|.+....-.. +.+ -++|+.|+++++.-.  ..--..+...+++|.+||++.|. ++......+..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            888888765322111 111 246777777765421  11112233457777777777653 3333334455666677777


Q ss_pred             ccCCcCCccC--cccCCCCCCCEEEccCC
Q 038407          169 LDGNHFREIL--ESLSKCSSLEGLYLSDN  195 (528)
Q Consensus       169 l~~n~~~~~~--~~~~~l~~L~~L~L~~n  195 (528)
                      ++.|....-.  -.+...|.|.+|++.++
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            7666432110  14555666666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.62  E-value=1.2e-09  Score=108.43  Aligned_cols=124  Identities=28%  Similarity=0.220  Sum_probs=53.0

Q ss_pred             CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCc-cccCCCCCCeeecCC
Q 038407          140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPE  218 (528)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~  218 (528)
                      |.+.+.++|++.. +...+.-++.++.|+|++|+++... .+..++.|++|||++|.+. .+|. ....++ |..|.+++
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence            3344444444431 2233333444555555555544443 3444455555555555444 2221 111222 45555555


Q ss_pred             ceeeccCcccccCCCCCCEEEcccCcccccccchhhhcccc-ceeeeccCcc
Q 038407          219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNF  269 (528)
Q Consensus       219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~L~~n~l  269 (528)
                      |.++..  ..+.++.+|+.||+++|-+.+.....+++.+.. +.|+|.+|.+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            544421  223444555555555555444433333333332 4445555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=5.3e-10  Score=110.91  Aligned_cols=179  Identities=31%  Similarity=0.368  Sum_probs=119.8

Q ss_pred             chhhhCCCCCCEEEccCCcCcccCChhhhhcC-CCCCEEEccCCCCccc---cCc---Ccc---CCCCCCEEEccCCcCc
Q 038407            8 PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENN-TKLESNFLLNNSLPGL---FLL---PIH---CHKSLMLLDVSNNNLQ   77 (528)
Q Consensus         8 ~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l-~~L~~L~L~~n~~~~~---~~~---~~~---~~~~L~~L~ls~n~l~   77 (528)
                      |-.+..+++|++|.|.+|+++.  ...+ ..+ ..|+.| +.+|.++..   +..   .+.   ..-.|...+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL-~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGL-QELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhh-HHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            4566777888888888887752  1111 111 123333 222322210   000   011   1245777888888887


Q ss_pred             cccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCcc
Q 038407           78 GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPR  157 (528)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  157 (528)
                       .+. ...+.++.++.|+|++|+++..  +.+..+++|++|||+.|.+. .+|..-..++. |+.|.+++|.++.  ...
T Consensus       178 -~mD-~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~g  249 (1096)
T KOG1859|consen  178 -LMD-ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRG  249 (1096)
T ss_pred             -hHH-HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhh
Confidence             443 4445588999999999998754  37888899999999999988 78775544555 8999999998875  456


Q ss_pred             CCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccC
Q 038407          158 NFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLS  198 (528)
Q Consensus       158 ~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~  198 (528)
                      +.++.+|+.||+++|-+.+...  .+..+..|+.|.|.+|++.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6788889999999998765533  3456677888888888874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.7e-09  Score=95.14  Aligned_cols=178  Identities=24%  Similarity=0.206  Sum_probs=118.8

Q ss_pred             CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCc-ccccCChhhhhCCCCCCE
Q 038407           64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ-LTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~  142 (528)
                      ..|++||||+..++..--..+...+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..-...++.+++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588888888877744334444557788888888888887777777888888888888764 443333455667888888


Q ss_pred             EEccCCcCcccCCccCC--CCCCCCEEEccCCcCCc----cCcccCCCCCCCEEEccCCc-cCccCCccccCCCCCCeee
Q 038407          143 LLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFRE----ILESLSKCSSLEGLYLSDNN-LSGKIPRWLGNLSMLQHII  215 (528)
Q Consensus       143 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~  215 (528)
                      |+++-|.+.........  --++|+.|++++++-.-    +..-...+|+|..|||++|. ++......|.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            88888876542211111  23568888888875321    11134568888888888874 3333334566788888888


Q ss_pred             cCCceeeccCcc---cccCCCCCCEEEcccC
Q 038407          216 LPENHFEGPIPM---EFCQLDSLQILNISDN  243 (528)
Q Consensus       216 L~~n~i~~~~~~---~l~~l~~L~~L~L~~n  243 (528)
                      ++.|-.  +.|.   .+...+.|.+|++.++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            887743  3343   4566778888887665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.51  E-value=2.8e-08  Score=87.58  Aligned_cols=185  Identities=21%  Similarity=0.189  Sum_probs=88.8

Q ss_pred             hCCCCCCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCCccc----c-------CcCccCCCCCCEEEccCCcCc
Q 038407           12 YHQHDLEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSLPGL----F-------LLPIHCHKSLMLLDVSNNNLQ   77 (528)
Q Consensus        12 ~~~~~L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~----~-------~~~~~~~~~L~~L~ls~n~l~   77 (528)
                      ..+..+..++||+|-|......++   +.+-++|+..+++.- +++.    +       ..++-+|++|+.++||.|.+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            446777777777777764443333   233455666555542 1221    1       123456677777777777665


Q ss_pred             cccChhhhh---cCCCCceeeccCCcCcccCCcc-------------ccCCCCCCEEEccCCcccccCChhh----hhCC
Q 038407           78 GHIPVKIGD---FLPSLKYFNISMNAFDSSIPTS-------------FGNMNFLISLDLSNNQLTGEIPEHL----AMGC  137 (528)
Q Consensus        78 ~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l  137 (528)
                      ...|..+..   .-+.|++|.+++|.+..+--.-             ..+-+.|++.....|++. ..+...    +..-
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh  184 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESH  184 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhh
Confidence            555443332   1345666666666553211111             122345666666666554 333211    1112


Q ss_pred             CCCCEEEccCCcCcccC-----CccCCCCCCCCEEEccCCcCCccCc-----ccCCCCCCCEEEccCCccC
Q 038407          138 VDLEYLLLSNNSLEGHL-----FPRNFNLTNLRRLQLDGNHFREILE-----SLSKCSSLEGLYLSDNNLS  198 (528)
Q Consensus       138 ~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~L~~n~l~  198 (528)
                      ..|+++.+..|.|....     ...++.+.+|+.||++.|.++....     .++.++.|+.|.+..|-++
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            34555555555554210     0112234555555555555543221     3344444555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=5.4e-08  Score=86.98  Aligned_cols=61  Identities=18%  Similarity=0.173  Sum_probs=28.4

Q ss_pred             CCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceee
Q 038407          162 TNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFE  222 (528)
Q Consensus       162 ~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~  222 (528)
                      +++..+.+..|.+.....  .+...+.+..|+|+.+++... .-+.+.++++|+.|.++++.+.
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            444444444444443322  334444455555555555322 1133445555555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=3.9e-08  Score=77.57  Aligned_cols=114  Identities=22%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             CCCEEEccCCcCcccCChhh--hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407           16 DLEFVRLSHLNLNGEFPNWL--LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY   93 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (528)
                      .+..++|+.|.+. .++...  +....+|...+|++|.+....+..-..++.++.|++++|.++ .+|..+.. ++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence            4556677777653 344332  344455666677777666433333334456677777777776 66766544 667777


Q ss_pred             eeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhh
Q 038407           94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA  134 (528)
Q Consensus        94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  134 (528)
                      |+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..++
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~  143 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF  143 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence            777777765 45566666667777777777666 6665544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=3.7e-07  Score=81.75  Aligned_cols=63  Identities=19%  Similarity=0.228  Sum_probs=44.8

Q ss_pred             CCCCCEEEccCCcCcccC-CccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccCc
Q 038407          137 CVDLEYLLLSNNSLEGHL-FPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLSG  199 (528)
Q Consensus       137 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~~  199 (528)
                      .+++..+-+..|.+.... -.....++.+-.|+++.+++.....  .+..++.|..|.++++++.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            356666666666654321 1223356677789999999987654  78889999999999998864

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=6.3e-08  Score=76.45  Aligned_cols=109  Identities=20%  Similarity=0.335  Sum_probs=80.1

Q ss_pred             cccEEECCCCcCccCCChhhh-ccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          358 YLSELDLSYNKLIGQIPPQIG-NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      .|+..+|++|.+. ..|..|. .++.++.|+|++|.|+ .+|..++.++.|+.|+++.|.+. ..|..+..+.+|..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            4777899999988 4555554 4568899999999998 66777999999999999999998 66777777888889998


Q ss_pred             cCCCCccCCCCCCcccCCC-CcCcccCCCCCCCCCC
Q 038407          437 AHNNLSGKIPEWTAQFATF-NESSYEGNPFLCGLPL  471 (528)
Q Consensus       437 s~N~l~~~~p~~~~~~~~l-~~l~l~~Np~~c~~~l  471 (528)
                      .+|.+. .+|..+ -.+++ -...+.++||.-+|+.
T Consensus       131 ~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  131 PENARA-EIDVDL-FYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             CCCccc-cCcHHH-hccccHHHHHhcCCcccccCcc
Confidence            888877 455442 22222 2345577777765554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.20  E-value=2.8e-06  Score=72.04  Aligned_cols=83  Identities=29%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             CCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccCcc---CCccccCCCCC
Q 038407          137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLSGK---IPRWLGNLSML  211 (528)
Q Consensus       137 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L  211 (528)
                      ++.|.+|.+++|+|+...+.-..-+++|+.|.+.+|.+..+.+  .+..||.|++|.+-+|+++..   -...+..+|+|
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l  142 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL  142 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence            3344444444444443222222233444444444444443332  345556666666666655421   12245566677


Q ss_pred             CeeecCCc
Q 038407          212 QHIILPEN  219 (528)
Q Consensus       212 ~~L~L~~n  219 (528)
                      +.||+..-
T Consensus       143 ~~LDF~kV  150 (233)
T KOG1644|consen  143 RTLDFQKV  150 (233)
T ss_pred             eEeehhhh
Confidence            77766643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=1e-06  Score=78.01  Aligned_cols=211  Identities=23%  Similarity=0.190  Sum_probs=135.2

Q ss_pred             hcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcC---ccccChhhh------hcCCCCceeeccCCcCcc
Q 038407           37 ENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNL---QGHIPVKIG------DFLPSLKYFNISMNAFDS  103 (528)
Q Consensus        37 ~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l---~~~~~~~~~------~~l~~L~~L~L~~n~i~~  103 (528)
                      .-+..+..++||+|.+...    +...+.+-++|+..+++.-..   ...++..+.      -.||.|+..+||.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            4578899999999998654    334456678899998886432   223332211      127899999999999876


Q ss_pred             cCCcc----ccCCCCCCEEEccCCcccc----cCChhhh--------hCCCCCCEEEccCCcCcccCC----ccCCCCCC
Q 038407          104 SIPTS----FGNMNFLISLDLSNNQLTG----EIPEHLA--------MGCVDLEYLLLSNNSLEGHLF----PRNFNLTN  163 (528)
Q Consensus       104 ~~~~~----~~~l~~L~~L~l~~n~l~~----~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~  163 (528)
                      ..|..    +..-..|++|.+++|.+..    .+...+|        ..-|.|++.....|++..-..    ..+..-.+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            66643    4566789999999998751    1222221        134678888888888764111    11223357


Q ss_pred             CCEEEccCCcCCccC------cccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCccc----c
Q 038407          164 LRRLQLDGNHFREIL------ESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPME----F  229 (528)
Q Consensus       164 L~~L~l~~n~~~~~~------~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~----l  229 (528)
                      |+.+.+.+|.|..-.      ..+..+.+|+.||+..|.++-.    ....+..++.|++|.+.+|-++.....+    |
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            888888888776321      1345678888888888877532    2334455667888888888776432221    1


Q ss_pred             c--CCCCCCEEEcccCcccc
Q 038407          230 C--QLDSLQILNISDNNISG  247 (528)
Q Consensus       230 ~--~l~~L~~L~L~~n~l~~  247 (528)
                      .  ..++|+.|...+|.+.+
T Consensus       267 ~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         267 NEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhhcCCCccccccchhhhcC
Confidence            1  24677777777776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=4e-06  Score=71.09  Aligned_cols=102  Identities=23%  Similarity=0.244  Sum_probs=52.5

Q ss_pred             CCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccC-CCCCCCEEEccCCccCccC-CccccCCCCCCeeec
Q 038407          139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLS-KCSSLEGLYLSDNNLSGKI-PRWLGNLSMLQHIIL  216 (528)
Q Consensus       139 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L  216 (528)
                      +...+|+++|.+..  .+.|..++.|.+|.++.|+|+.+.+.+. -+++|+.|.+.+|.+.... -+-+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            44555555555542  3445555666666666666666555333 2345666666666554210 112345556666666


Q ss_pred             CCceeecc---CcccccCCCCCCEEEccc
Q 038407          217 PENHFEGP---IPMEFCQLDSLQILNISD  242 (528)
Q Consensus       217 ~~n~i~~~---~~~~l~~l~~L~~L~L~~  242 (528)
                      -+|.++..   --..+..+++|+.||..+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            66655422   112344556666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=2.4e-06  Score=54.58  Aligned_cols=36  Identities=33%  Similarity=0.617  Sum_probs=16.8

Q ss_pred             CCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407          406 HIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS  442 (528)
Q Consensus       406 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  442 (528)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 23334455555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.07  E-value=2.5e-06  Score=54.46  Aligned_cols=37  Identities=35%  Similarity=0.649  Sum_probs=23.1

Q ss_pred             ccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407          381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD  418 (528)
Q Consensus       381 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  418 (528)
                      ++|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            356677777777773 4445667777777777777766

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.00  E-value=1.8e-05  Score=65.02  Aligned_cols=123  Identities=26%  Similarity=0.302  Sum_probs=51.0

Q ss_pred             hhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcC
Q 038407            9 NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFL   88 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l   88 (528)
                      .+|.++++|+.+.+.. .+. .++...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+. .++...+..+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            3556666666666653 333 455555666666666666553 4444445566665666666654 333 3444444445


Q ss_pred             CCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC
Q 038407           89 PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL  140 (528)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  140 (528)
                      ++++.+.+..+ +..+....|.+. +|+.+.+.. .+. .++...|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            56666666543 444444555554 566666554 333 4555555555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.97  E-value=3.9e-06  Score=87.79  Aligned_cols=133  Identities=26%  Similarity=0.337  Sum_probs=90.7

Q ss_pred             CCCCEEEccCCc-CccccChhhhhcCCCCceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407           64 KSLMLLDVSNNN-LQGHIPVKIGDFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE  141 (528)
Q Consensus        64 ~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  141 (528)
                      .+|++||+++.. +....+..++..+|+|++|.+.+-.+... .-....++++|..||+++.+++ .+ .++ +.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence            678888888864 33345677788889999998887655421 2234457888888898888887 55 334 4688888


Q ss_pred             EEEccCCcCcc-cCCccCCCCCCCCEEEccCCcCCccCc-------ccCCCCCCCEEEccCCccCc
Q 038407          142 YLLLSNNSLEG-HLFPRNFNLTNLRRLQLDGNHFREILE-------SLSKCSSLEGLYLSDNNLSG  199 (528)
Q Consensus       142 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~l~~L~~L~L~~n~l~~  199 (528)
                      +|.+.+=.+.. .....++++++|+.||+|.......+.       .-..+|+|+.||.++..+..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            88887766653 233456788888888888776554331       22346777777777766654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.91  E-value=2.2e-05  Score=64.48  Aligned_cols=110  Identities=23%  Similarity=0.211  Sum_probs=58.3

Q ss_pred             CChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCcccc
Q 038407           31 FPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG  110 (528)
Q Consensus        31 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  110 (528)
                      ++...|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...+..+++++.+.+.. .+.......|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence            4555677777888888764 455555667777777888877764 55 56666666666777777755 44445556666


Q ss_pred             CCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccC
Q 038407          111 NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN  147 (528)
Q Consensus       111 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  147 (528)
                      .+++|+.+++..+ +. .++...+.++ .++.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            6777777777554 44 5555555554 666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=1.7e-05  Score=83.13  Aligned_cols=134  Identities=18%  Similarity=0.172  Sum_probs=70.4

Q ss_pred             CCCCEEEccCCCCccc-cCcCc-cCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCE
Q 038407           40 TKLESNFLLNNSLPGL-FLLPI-HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLIS  117 (528)
Q Consensus        40 ~~L~~L~L~~n~~~~~-~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  117 (528)
                      .+|++|++++...-.. -+..+ .-+|.|+.|.+++-.+...--..++..+|+|+.||+|+..++..  ..+.++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4566666666432211 11111 23566666666665543211123444466677777777666533  45566666666


Q ss_pred             EEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccC------CccCCCCCCCCEEEccCCcCCc
Q 038407          118 LDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHL------FPRNFNLTNLRRLQLDGNHFRE  176 (528)
Q Consensus       118 L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~  176 (528)
                      |.+.+=.+.. ..-..+| ++++|+.||+|..+.....      ...-..+++|+.||.+++.+..
T Consensus       200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            6666555542 1112344 5677777777765433211      1122346777777777776653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=7.3e-05  Score=72.19  Aligned_cols=72  Identities=15%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCC-cCccccChhhhhcCCCCceeeccCC-cCcccCCccccCCCCC
Q 038407           38 NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN-NLQGHIPVKIGDFLPSLKYFNISMN-AFDSSIPTSFGNMNFL  115 (528)
Q Consensus        38 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L  115 (528)
                      .+.++++|++++|.++.. |.   -..+|++|.++++ .++ .+|..+   .++|++|++++| .+. .+|      ..|
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCccccc-ccc------ccc
Confidence            366777777777765533 21   1235777777653 333 455433   246677777766 332 233      235


Q ss_pred             CEEEccCCc
Q 038407          116 ISLDLSNNQ  124 (528)
Q Consensus       116 ~~L~l~~n~  124 (528)
                      +.|++..+.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            556665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.00015  Score=70.03  Aligned_cols=137  Identities=20%  Similarity=0.175  Sum_probs=90.2

Q ss_pred             hhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCC-cCccccChhhhhcCC
Q 038407           11 FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN-NLQGHIPVKIGDFLP   89 (528)
Q Consensus        11 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~   89 (528)
                      +..++++++|++++|.++ .+|.  +  -++|++|.+++|.--..+|..+  .++|++|++++| .+. .+|       +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------E  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------c
Confidence            445789999999999887 7773  1  3579999999876544555444  368999999998 554 444       4


Q ss_pred             CCceeeccCCcCcccCCccccCC-CCCCEEEccCCc-cc-ccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCE
Q 038407           90 SLKYFNISMNAFDSSIPTSFGNM-NFLISLDLSNNQ-LT-GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR  166 (528)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~-l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  166 (528)
                      +|+.|+++.+....     +..+ ++|+.|.+.+++ .. ..+|..+   .++|++|++++|.... .|..+.  .+|+.
T Consensus       113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i~-LP~~LP--~SLk~  181 (426)
T PRK15386        113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNII-LPEKLP--ESLQS  181 (426)
T ss_pred             ccceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc---CCcccEEEecCCCccc-Cccccc--ccCcE
Confidence            68888887765431     2223 357777775432 11 1222111   2579999999988653 333332  58999


Q ss_pred             EEccCCc
Q 038407          167 LQLDGNH  173 (528)
Q Consensus       167 L~l~~n~  173 (528)
                      |.++.+.
T Consensus       182 L~ls~n~  188 (426)
T PRK15386        182 ITLHIEQ  188 (426)
T ss_pred             EEecccc
Confidence            9998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.66  E-value=1.3e-06  Score=82.13  Aligned_cols=275  Identities=18%  Similarity=0.106  Sum_probs=156.4

Q ss_pred             CCCCEEEccCCcCccc-CChhhhhcCCCCCEEEccCCCC-ccccCcCc-cCCCCCCEEEccCC-cCccccChhhhhcCCC
Q 038407           15 HDLEFVRLSHLNLNGE-FPNWLLENNTKLESNFLLNNSL-PGLFLLPI-HCHKSLMLLDVSNN-NLQGHIPVKIGDFLPS   90 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~-~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~   90 (528)
                      ..|+.|.+.++.-.+. -...+-.+++++++|++.+|.. ++..-..+ ..+++|++|++..+ .++...-..+...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4689999999865432 2233457899999999998863 33322223 35789999999984 4554444456777999


Q ss_pred             CceeeccCCc-Cccc-CCccccCCCCCCEEEccCCcccccCChh----hhhCCCCCCEEEccCCc-Cccc-CCccCCCCC
Q 038407           91 LKYFNISMNA-FDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEH----LAMGCVDLEYLLLSNNS-LEGH-LFPRNFNLT  162 (528)
Q Consensus        91 L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~  162 (528)
                      |++|++++|. |++. +...+.+...++.+.+.+|.   ..+..    ....+..+.++++.+|. +++. +...-..+.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            9999999874 3321 11223455566666666543   11211    11234445566655552 3321 111123567


Q ss_pred             CCCEEEccCCcCCccCc---ccCCCCCCCEEEccCCcc-CccCCccc-cCCCCCCeeecCCceeecc--CcccccCCCCC
Q 038407          163 NLRRLQLDGNHFREILE---SLSKCSSLEGLYLSDNNL-SGKIPRWL-GNLSMLQHIILPENHFEGP--IPMEFCQLDSL  235 (528)
Q Consensus       163 ~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L  235 (528)
                      .|+.|+.+++....-..   --.++++|+.|.++.++. ++.--..+ .+++.|+.+++..+.....  +...-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            77888777764421111   224567888888887753 22111111 3467788888877654311  22223467778


Q ss_pred             CEEEcccCcccccc---c--chhhhccccceeeeccCccc-ccCcccccCCCCCCEEEccCCc
Q 038407          236 QILNISDNNISGIY---H--HASILSLSKDQLVLAHNNFE-GEVPIQLCQLNKLQLIDLSNNI  292 (528)
Q Consensus       236 ~~L~L~~n~l~~~~---~--~~~~~~~~~~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~  292 (528)
                      +.+.++++..-...   .  ......-.+..+.+++++.. ....+.+..+++|+.+++-+++
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            88888876432111   0  00111122366677777543 3344567778899998887765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=8.7e-05  Score=65.99  Aligned_cols=109  Identities=26%  Similarity=0.273  Sum_probs=74.4

Q ss_pred             hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCC--cCccccChhhhhcCCCCceeeccCCcCccc-CCccccCC
Q 038407           36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN--NLQGHIPVKIGDFLPSLKYFNISMNAFDSS-IPTSFGNM  112 (528)
Q Consensus        36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l  112 (528)
                      ......|+.+++.+..++..  ..+-.+++|+.|.+|.|  ++.+.++.-+-. +|+|++|++++|+|... --..+..+
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhh
Confidence            45567777777777776643  23446788999999999  666566555555 68999999999998631 11234567


Q ss_pred             CCCCEEEccCCcccccCC---hhhhhCCCCCCEEEccCC
Q 038407          113 NFLISLDLSNNQLTGEIP---EHLAMGCVDLEYLLLSNN  148 (528)
Q Consensus       113 ~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n  148 (528)
                      .+|..|++.+|..+ .+.   ..+|.-+++|++|+-...
T Consensus       116 ~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cchhhhhcccCCcc-ccccHHHHHHHHhhhhcccccccc
Confidence            78889999998776 333   245555778888776543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.28  E-value=1.4e-05  Score=75.19  Aligned_cols=277  Identities=17%  Similarity=0.119  Sum_probs=149.4

Q ss_pred             hhhCCCCCCEEEccCCc-CcccCChhhhhcCCCCCEEEccCCC-CccccCc-CccCCCCCCEEEccCCc-CccccChhhh
Q 038407           10 FFYHQHDLEFVRLSHLN-LNGEFPNWLLENNTKLESNFLLNNS-LPGLFLL-PIHCHKSLMLLDVSNNN-LQGHIPVKIG   85 (528)
Q Consensus        10 ~l~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~-~~~~~~~L~~L~ls~n~-l~~~~~~~~~   85 (528)
                      +-.++++++.|++.+|. +++..-..+-..|++|+++++..|. ++...-. -..++++|++|+++.+. +++.-...+.
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            44788999999998885 4433333445678999999998864 3433222 34578999999999774 4443333455


Q ss_pred             hcCCCCceeeccCCcCcccCCccc----cCCCCCCEEEccCCc-ccccCChhhhhCCCCCCEEEccCCcC-cccCCccC-
Q 038407           86 DFLPSLKYFNISMNAFDSSIPTSF----GNMNFLISLDLSNNQ-LTGEIPEHLAMGCVDLEYLLLSNNSL-EGHLFPRN-  158 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-  158 (528)
                      +.++.++.+.+.+|.-.  .-..+    +....+..+++.++. ++..--..+..++..|+.|+.+++.- +......+ 
T Consensus       239 rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg  316 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG  316 (483)
T ss_pred             ccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence            55667777766665321  11122    233445566655553 22111122334566777887776643 22111222 


Q ss_pred             CCCCCCCEEEccCCc-CCccCc--ccCCCCCCCEEEccCCccCc--cCCccccCCCCCCeeecCCceee-ccC----ccc
Q 038407          159 FNLTNLRRLQLDGNH-FREILE--SLSKCSSLEGLYLSDNNLSG--KIPRWLGNLSMLQHIILPENHFE-GPI----PME  228 (528)
Q Consensus       159 ~~l~~L~~L~l~~n~-~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~-~~~----~~~  228 (528)
                      .+..+|+.|-+.+++ ++..-.  --.+++.|+.+++..+....  .+...-.+++.|+.+.++.+... +..    ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            256778888777775 222211  12356777777777764421  11122235677788777766432 211    112


Q ss_pred             ccCCCCCCEEEcccCcccccccchhhhc-cccceeeeccCccc--ccCcccccCCCCCCEEEc
Q 038407          229 FCQLDSLQILNISDNNISGIYHHASILS-LSKDQLVLAHNNFE--GEVPIQLCQLNKLQLIDL  288 (528)
Q Consensus       229 l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l  288 (528)
                      -.++..|+.+.+++++............ ..++.+++.+++-.  ..+...-.++|+++...+
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            2455677777777776543222222221 22255666555322  122233445666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=1.7e-05  Score=70.71  Aligned_cols=97  Identities=26%  Similarity=0.249  Sum_probs=55.8

Q ss_pred             CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEE
Q 038407          114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLY  191 (528)
Q Consensus       114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~  191 (528)
                      +.+.|+..++.+. .|  .+...++.|++|.|+-|+|+.  ...+..|++|++|+|..|.|.++..  -+.++|+|+.|.
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4445555555554 22  233456666666666666664  3445566677777777776666544  456677777777


Q ss_pred             ccCCccCccCCc-----cccCCCCCCeee
Q 038407          192 LSDNNLSGKIPR-----WLGNLSMLQHII  215 (528)
Q Consensus       192 L~~n~l~~~~~~-----~l~~l~~L~~L~  215 (528)
                      |..|.-.+..+.     .+.-+|+|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777665543322     234455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00022  Score=63.53  Aligned_cols=115  Identities=23%  Similarity=0.156  Sum_probs=73.4

Q ss_pred             ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC--cCcccCCccccCCCCCCEEEccCCcccc--cCChhhhh
Q 038407           60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN--AFDSSIPTSFGNMNFLISLDLSNNQLTG--EIPEHLAM  135 (528)
Q Consensus        60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~  135 (528)
                      ...+..|+.|++.+..++ .+. .+-. +|+|++|.++.|  ++.+-++-....+++|+++++++|++..  .++.  ..
T Consensus        39 ~d~~~~le~ls~~n~glt-t~~-~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~  113 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TLT-NFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LK  113 (260)
T ss_pred             cccccchhhhhhhcccee-ecc-cCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hh
Confidence            345567777777777766 221 1222 789999999999  6665555556677999999999998762  2222  13


Q ss_pred             CCCCCCEEEccCCcCcccCC---ccCCCCCCCCEEEccCCcCCccCc
Q 038407          136 GCVDLEYLLLSNNSLEGHLF---PRNFNLTNLRRLQLDGNHFREILE  179 (528)
Q Consensus       136 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~  179 (528)
                      .+.+|..|++.+|..+...-   ..|.-+++|++|+-....-...+.
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~  160 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE  160 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence            46778899999887664111   123456778877755444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=1.8e-05  Score=70.54  Aligned_cols=100  Identities=19%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh-hhhhcCCCCc
Q 038407           14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV-KIGDFLPSLK   92 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~l~~L~   92 (528)
                      +.+.+.|+..+|.+. .|.  +...|+.|++|.|+-|+++..  ..+..|++|++|+|..|.|. .+.. .....+|+|+
T Consensus        18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            346778888888876 333  357888888888888888755  45778888888888888876 3322 2223477888


Q ss_pred             eeeccCCcCcccCCc-----cccCCCCCCEEE
Q 038407           93 YFNISMNAFDSSIPT-----SFGNMNFLISLD  119 (528)
Q Consensus        93 ~L~L~~n~i~~~~~~-----~~~~l~~L~~L~  119 (528)
                      .|.|..|.-.+..+.     .+..+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888877766543332     344566666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.94  E-value=9.3e-05  Score=76.08  Aligned_cols=14  Identities=29%  Similarity=0.320  Sum_probs=7.9

Q ss_pred             CCCCCEEEccCCcC
Q 038407          280 LNKLQLIDLSNNIL  293 (528)
Q Consensus       280 l~~L~~L~ls~n~l  293 (528)
                      +..++.+++.++..
T Consensus       426 ~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRV  439 (482)
T ss_pred             hhccccCCccCccc
Confidence            45566666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.27  E-value=0.0017  Score=66.69  Aligned_cols=209  Identities=22%  Similarity=0.099  Sum_probs=109.2

Q ss_pred             hCCCCCCEEEccCCcCcccC-ChhhhhcCCCCCEEEccCC-CCcccc----CcCccCCCCCCEEEccCCc-CccccChhh
Q 038407           12 YHQHDLEFVRLSHLNLNGEF-PNWLLENNTKLESNFLLNN-SLPGLF----LLPIHCHKSLMLLDVSNNN-LQGHIPVKI   84 (528)
Q Consensus        12 ~~~~~L~~L~Ls~~~~~~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~----~~~~~~~~~L~~L~ls~n~-l~~~~~~~~   84 (528)
                      ..++.|+.|.+.++.-.... -..+...++.|+.|+++++ ......    ......+++|+.|+++++. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            34677888888777432221 1233467788888888763 221111    1233456778888888776 553333444


Q ss_pred             hhcCCCCceeeccCCc-CcccCC-ccccCCCCCCEEEccCCcccc-c-CChhhhhCCCCCCEEEccCCc----Ccc----
Q 038407           85 GDFLPSLKYFNISMNA-FDSSIP-TSFGNMNFLISLDLSNNQLTG-E-IPEHLAMGCVDLEYLLLSNNS----LEG----  152 (528)
Q Consensus        85 ~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~~l~~L~~L~l~~n~----l~~----  152 (528)
                      ...+++|++|.+..|. +++..- .....++.|++|+++.+.... . +... ..++++++.|.+....    ++.    
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~  343 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLS  343 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHH
Confidence            4457788888877666 442211 223356678888887765421 1 2222 2345555554433321    110    


Q ss_pred             ---------cCCccCCCCCCCCEEEccCCcCCccC--cccCCCCC--------------CCEEEccCCccCcc-CCcccc
Q 038407          153 ---------HLFPRNFNLTNLRRLQLDGNHFREIL--ESLSKCSS--------------LEGLYLSDNNLSGK-IPRWLG  206 (528)
Q Consensus       153 ---------~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~--------------L~~L~L~~n~l~~~-~~~~l~  206 (528)
                               ........+++++.+.+..+......  ..+.+++.              ++.|+++.+..... .-....
T Consensus       344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~  423 (482)
T KOG1947|consen  344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA  423 (482)
T ss_pred             HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHh
Confidence                     11112336677777777776643332  13344443              47777777654311 111111


Q ss_pred             C-CCCCCeeecCCcee
Q 038407          207 N-LSMLQHIILPENHF  221 (528)
Q Consensus       207 ~-l~~L~~L~L~~n~i  221 (528)
                      . +..++.+++.++..
T Consensus       424 ~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  424 DSCSNLKDLDLSGCRV  439 (482)
T ss_pred             hhhhccccCCccCccc
Confidence            1 55667777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.54  E-value=0.0041  Score=32.85  Aligned_cols=11  Identities=64%  Similarity=0.676  Sum_probs=4.4

Q ss_pred             CEEeCCCcccc
Q 038407          384 QTLNLSYNNLT  394 (528)
Q Consensus       384 ~~L~Ls~n~l~  394 (528)
                      ++|+|++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.41  E-value=0.0062  Score=32.17  Aligned_cols=19  Identities=42%  Similarity=0.569  Sum_probs=10.6

Q ss_pred             CCeeeCcCCcCcccCccccc
Q 038407          407 IKSLDLSYNKLDGKIPLQLV  426 (528)
Q Consensus       407 L~~L~Ls~N~l~~~~~~~~~  426 (528)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666666 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.05  E-value=0.00041  Score=69.69  Aligned_cols=182  Identities=25%  Similarity=0.247  Sum_probs=86.2

Q ss_pred             CCEEEccCCcCccccChhhhh---cCCCCceeeccCCcCcccCC----ccccCC-CCCCEEEccCCccccc----CChhh
Q 038407           66 LMLLDVSNNNLQGHIPVKIGD---FLPSLKYFNISMNAFDSSIP----TSFGNM-NFLISLDLSNNQLTGE----IPEHL  133 (528)
Q Consensus        66 L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~  133 (528)
                      +..|.+.+|.+.......+.+   ..++|..|++++|.+.+..-    ..+... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            455555555554322222221   13455555555555542111    111121 3455555555555432    22222


Q ss_pred             hhCCCCCCEEEccCCcCcc----cCCc----cCCCCCCCCEEEccCCcCCccC-----cccCCCCC-CCEEEccCCccCc
Q 038407          134 AMGCVDLEYLLLSNNSLEG----HLFP----RNFNLTNLRRLQLDGNHFREIL-----ESLSKCSS-LEGLYLSDNNLSG  199 (528)
Q Consensus       134 ~~~l~~L~~L~l~~n~l~~----~~~~----~~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~-L~~L~L~~n~l~~  199 (528)
                      . ....++.++++.|.+..    ....    .+....++++|.+.+|.++...     ..+...+. +..+++..|.+.+
T Consensus       169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            2 24456666666665431    0111    1223556666666666655321     13334444 5557777766653


Q ss_pred             c----CCccccCC-CCCCeeecCCceeeccC----cccccCCCCCCEEEcccCccccc
Q 038407          200 K----IPRWLGNL-SMLQHIILPENHFEGPI----PMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       200 ~----~~~~l~~l-~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      .    ....+..+ ..+++++++.|.++...    ...+..++.++.+.+++|.+...
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            2    11223333 45677777777766432    23344556777777777766543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.96  E-value=0.0017  Score=56.70  Aligned_cols=80  Identities=20%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccC
Q 038407          359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAH  438 (528)
Q Consensus       359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  438 (528)
                      .+.||++.|++. ..-..|+-++.+..|+++.|++. ..|..++++..++.+++.+|..+ ..|.++...++++.+++.+
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            445555555544 23334444555555555555555 44555555555555555555554 3455555555555555555


Q ss_pred             CCC
Q 038407          439 NNL  441 (528)
Q Consensus       439 N~l  441 (528)
                      |.+
T Consensus       121 ~~~  123 (326)
T KOG0473|consen  121 TEF  123 (326)
T ss_pred             Ccc
Confidence            543

>TIGR00864 PCC polycystin cation channel protein

Probab=93.69  E-value=0.026  Score=66.50  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=27.0

Q ss_pred             EccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          435 NVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       435 ~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ||++|+|+...+..+..+.+|+.++|++|||.|+|.+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~   38 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA   38 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence            46667776665556666667777777888888888764

Note: this model has been restricted to the amino half because for technical reasons.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.99  E-value=0.11  Score=28.66  Aligned_cols=23  Identities=22%  Similarity=0.275  Sum_probs=16.5

Q ss_pred             CCCCCEEEccCCcCcccCChhhhh
Q 038407           14 QHDLEFVRLSHLNLNGEFPNWLLE   37 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~~~~~~~~~~   37 (528)
                      +++|++|+|++|++. .+|...|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467788888888876 67776653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.99  E-value=0.11  Score=28.66  Aligned_cols=23  Identities=22%  Similarity=0.275  Sum_probs=16.5

Q ss_pred             CCCCCEEEccCCcCcccCChhhhh
Q 038407           14 QHDLEFVRLSHLNLNGEFPNWLLE   37 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~~~~~~~~~~   37 (528)
                      +++|++|+|++|++. .+|...|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467788888888876 67776653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.60  E-value=0.096  Score=28.83  Aligned_cols=14  Identities=43%  Similarity=0.705  Sum_probs=6.7

Q ss_pred             CCCCeeeCcCCcCc
Q 038407          405 KHIKSLDLSYNKLD  418 (528)
Q Consensus       405 ~~L~~L~Ls~N~l~  418 (528)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444455555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.60  E-value=0.096  Score=28.83  Aligned_cols=14  Identities=43%  Similarity=0.705  Sum_probs=6.7

Q ss_pred             CCCCeeeCcCCcCc
Q 038407          405 KHIKSLDLSYNKLD  418 (528)
Q Consensus       405 ~~L~~L~Ls~N~l~  418 (528)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444455555444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.49  E-value=0.094  Score=25.57  Aligned_cols=11  Identities=45%  Similarity=0.748  Sum_probs=3.3

Q ss_pred             CCEEEccCCcC
Q 038407          164 LRRLQLDGNHF  174 (528)
Q Consensus       164 L~~L~l~~n~~  174 (528)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.40  E-value=0.0017  Score=65.39  Aligned_cols=183  Identities=23%  Similarity=0.189  Sum_probs=116.5

Q ss_pred             CCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCCcccc----CcCccCC-CCCCEEEccCCcCcccc----Chhh
Q 038407           17 LEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSLPGLF----LLPIHCH-KSLMLLDVSNNNLQGHI----PVKI   84 (528)
Q Consensus        17 L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~----~~~~~~~-~~L~~L~ls~n~l~~~~----~~~~   84 (528)
                      +..|.|.+|.+.......+   +...+.|+.|++++|.+.+..    ...+... ..+++|++..|.++..-    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6778888888764433222   566788888888888876431    1223332 56777888777776432    2333


Q ss_pred             hhcCCCCceeeccCCcCcc----cCCcc----ccCCCCCCEEEccCCcccccCCh---hhhhCCCC-CCEEEccCCcCcc
Q 038407           85 GDFLPSLKYFNISMNAFDS----SIPTS----FGNMNFLISLDLSNNQLTGEIPE---HLAMGCVD-LEYLLLSNNSLEG  152 (528)
Q Consensus        85 ~~~l~~L~~L~L~~n~i~~----~~~~~----~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~-L~~L~l~~n~l~~  152 (528)
                      .. ...++.++++.|.+..    ..+..    +....++++|.+.+|.++...-.   ......+. +..|++.+|.+.+
T Consensus       169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            33 5678888888887731    12222    33467889999998887621111   11122333 6668999998764


Q ss_pred             c----CCccCCCC-CCCCEEEccCCcCCccCc-----ccCCCCCCCEEEccCCccCcc
Q 038407          153 H----LFPRNFNL-TNLRRLQLDGNHFREILE-----SLSKCSSLEGLYLSDNNLSGK  200 (528)
Q Consensus       153 ~----~~~~~~~l-~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~  200 (528)
                      .    ..+.+..+ ..+++++++.|.+.....     .+..++.++++.++.|.+...
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            3    22334455 678999999999875432     566778999999999988643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.79  E-value=0.01  Score=51.98  Aligned_cols=86  Identities=24%  Similarity=0.315  Sum_probs=44.3

Q ss_pred             hhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCC
Q 038407          377 IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFN  456 (528)
Q Consensus       377 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~  456 (528)
                      +..+...+.||++.|++. -.-..|.-++.|..||++.|++. -.|..+.....++.+++..|..+ ..|....+.+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344455555555555554 22333455555555555555554 34555555555555555555554 3444444555555


Q ss_pred             cCcccCCCC
Q 038407          457 ESSYEGNPF  465 (528)
Q Consensus       457 ~l~l~~Np~  465 (528)
                      ..+..+||+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            555555553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.32  E-value=0.031  Score=48.14  Aligned_cols=81  Identities=17%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             CCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhcCCCCceeeccCC-cCcccCCccccCCCCCCEEE
Q 038407           42 LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDFLPSLKYFNISMN-AFDSSIPTSFGNMNFLISLD  119 (528)
Q Consensus        42 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~  119 (528)
                      ++.+|-+++.+....-+.+.+++.++.|.+.++. +.+.--..+....++|+.|++++| +|+...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4555555555555444555556666666665553 111111122223456666666655 34433334445555666555


Q ss_pred             ccC
Q 038407          120 LSN  122 (528)
Q Consensus       120 l~~  122 (528)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.13  E-value=0.079  Score=28.54  Aligned_cols=15  Identities=33%  Similarity=0.618  Sum_probs=6.5

Q ss_pred             CCCCeeeCcCCcCcc
Q 038407          405 KHIKSLDLSYNKLDG  419 (528)
Q Consensus       405 ~~L~~L~Ls~N~l~~  419 (528)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.60  E-value=0.042  Score=47.34  Aligned_cols=81  Identities=22%  Similarity=0.149  Sum_probs=41.3

Q ss_pred             CCceeeccCCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCC-cCcccCCccCCCCCCCCEE
Q 038407           90 SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNN-SLEGHLFPRNFNLTNLRRL  167 (528)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  167 (528)
                      .++.++.+++.|....-+.+.+++.++.|.+.+|.--+ -.-..+....++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45666666666665555556666666666666654211 000011112355666666655 3554334444455555555


Q ss_pred             Ecc
Q 038407          168 QLD  170 (528)
Q Consensus       168 ~l~  170 (528)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.25  E-value=0.72  Score=25.37  Aligned_cols=14  Identities=43%  Similarity=0.691  Sum_probs=8.2

Q ss_pred             CCCCeeeCcCCcCc
Q 038407          405 KHIKSLDLSYNKLD  418 (528)
Q Consensus       405 ~~L~~L~Ls~N~l~  418 (528)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45566666666664

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=85.01  E-value=3.8  Score=40.41  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=13.1

Q ss_pred             CCCCEEEccCCcCCcCCCC
Q 038407          281 NKLQLIDLSNNILSGHIPP  299 (528)
Q Consensus       281 ~~L~~L~ls~n~l~~~~p~  299 (528)
                      ..+++|+.+.|...+...+
T Consensus       354 ~R~q~l~~rdnnldgeg~~  372 (553)
T KOG4242|consen  354 QRVQVLLQRDNNLDGEGGA  372 (553)
T ss_pred             eeeeEeecccccccccccc
Confidence            3478888888877765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	528
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-42
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-42
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-14
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  168 bits (425), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 211/444 (47%), Gaps = 68/444 (15%)
Query: 74  NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNF-LISLDLSNNQLTGEIPEH 132
           NN  G +P+     +  LK  ++S N F   +P S  N++  L++LDLS+N  +G I  +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 133 LAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGLY 191
           L                      P+N     L+ L L  N F  +I  +LS CS L  L+
Sbjct: 385 LCQN-------------------PKN----TLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
           LS N LSG IP  LG+LS L+ + L  N  EG IP E   + +L+ L +  N+++G    
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD--------- 302
                 + + + L++N   GE+P  + +L  L ++ LSNN  SG+IP  L          
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 303 -NTTLHESYIDTS----SPESSETSFVDEGFAFYKEKKIQETF----------------- 340
            NT L    I  +    S + +      + + + K   +++                   
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 341 -KFTTKN----IAYTYRGRVISYLSE------LDLSYNKLIGQIPPQIGNLTRIQTLNLS 389
            + +T+N     +  Y G              LD+SYN L G IP +IG++  +  LNL 
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 390 YNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
           +N+++GSIP    +L+ +  LDLS NKLDG+IP  +  L  L   ++++NNLSG IPE  
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-M 720
Query: 450 AQFATFNESSYEGNPFLCGLPLPK 473
            QF TF  + +  NP LCG PLP+
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  167 bits (424), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 211/444 (47%), Gaps = 68/444 (15%)
Query: 74  NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNF-LISLDLSNNQLTGEIPEH 132
           NN  G +P+     +  LK  ++S N F   +P S  N++  L++LDLS+N  +G I  +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 133 LAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGLY 191
           L                      P+N     L+ L L  N F  +I  +LS CS L  L+
Sbjct: 388 LCQN-------------------PKN----TLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
           LS N LSG IP  LG+LS L+ + L  N  EG IP E   + +L+ L +  N+++G    
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD--------- 302
                 + + + L++N   GE+P  + +L  L ++ LSNN  SG+IP  L          
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 303 -NTTLHESYIDTS----SPESSETSFVDEGFAFYKEKKIQETF----------------- 340
            NT L    I  +    S + +      + + + K   +++                   
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 341 -KFTTKN----IAYTYRGRVISYLSE------LDLSYNKLIGQIPPQIGNLTRIQTLNLS 389
            + +T+N     +  Y G              LD+SYN L G IP +IG++  +  LNL 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 390 YNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
           +N+++GSIP    +L+ +  LDLS NKLDG+IP  +  L  L   ++++NNLSG IPE  
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-M 723
Query: 450 AQFATFNESSYEGNPFLCGLPLPK 473
            QF TF  + +  NP LCG PLP+
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 109/273 (39%), Gaps = 53/273 (19%)
Query: 224 PIPMEFCQLDSLQILNISD-NNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
           PIP     L  L  L I   NN+ G    A         L + H N  G +P  L Q+  
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
           L  +D S N LSG +PP +                SS  + V  G  F   +        
Sbjct: 127 LVTLDFSYNALSGTLPPSI----------------SSLPNLV--GITFDGNR-------- 160
Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
            +  I  +Y G      + + +S N+L G+IPP   NL  +  ++LS N L G     F 
Sbjct: 161 ISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218
Query: 403 N-----------------------LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN 439
           +                        K++  LDL  N++ G +P  L +L  L   NV+ N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 440 NLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472
           NL G+IP+       F+ S+Y  N  LCG PLP
Sbjct: 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
           NLTNL RL+L  N   +I  +LS  +SL+ L  S N ++   P  L NL+ L+ + +  N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
                 +  +   L+SL   N  ISD    GI  +   LSL+ +QL              
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 234
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
           L  L  L  +DL+NN +S   P      L    L  + I   SP +  T+  +       
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 291
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
           E ++++    +  KN+ Y            L L +N  I  I P + +LT++Q L   YN
Sbjct: 292 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRL-FFYN 336
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
           N    + S+ +NL +I  L   +N++    PL
Sbjct: 337 NKVSDV-SSLANLTNINWLSAGHNQISDLTPL 367

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
           NLTNL RL+L  N   +I  +LS  +SL+ L  S N ++   P  L NL+ L+ + +  N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
                 +  +   L+SL   N  ISD    GI  +   LSL+ +QL              
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 234
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
           L  L  L  +DL+NN +S   P      L    L  + I   SP +  T+  +       
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 291
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
           E ++++    +  KN+ Y            L L +N  I  I P + +LT++Q L   YN
Sbjct: 292 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRL-FFYN 336
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
           N    + S+ +NL +I  L   +N++    PL
Sbjct: 337 NKVSDV-SSLANLTNINWLSAGHNQISDLTPL 367

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
           NLTNL RL+L  N   +I  +LS  +SL+ L  S N ++   P  L NL+ L+ + +  N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
                 +  +   L+SL   N  ISD    GI  +   LSL+ +QL              
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 234
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
           L  L  L  +DL+NN +S   P      L    L  + I   SP +  T+  +       
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 291
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
           E ++++    +  KN+ Y            L L +N  I  I P + +LT++Q L  S N
Sbjct: 292 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRLFFSNN 337
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
            +  S  S+ +NL +I  L   +N++    PL
Sbjct: 338 KV--SDVSSLANLTNINWLSAGHNQISDLTPL 367

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
           GR + +L +L+L  N+L G  P      + IQ L L  N +       F  L  +K+L+L
Sbjct: 51  GR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 413 SYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP-EWTAQFATFNESSYEGNPFLCGLP 470
             N++   +P     LN+L   N+A N  +      W A++    + S  G    CG P
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW--LRKKSLNGGAARCGAP 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	528
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  340 bits (875), Expect = e-109
 Identities = 138/488 (28%), Positives = 203/488 (41%), Gaps = 68/488 (13%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL-----PGLFLLPIHC 62
            +       L+ + LS    +GE P  L   +  L +  L +N+      P L   P   
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-- 393

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
             +L  L + NN   G IP  + +    L   ++S N    +IP+S G+++ L  L L  
Sbjct: 394 -NTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR-EILES 180
           N L GEIP+ L M    LE L+L  N L G + P    N TNL  + L  N    EI + 
Sbjct: 452 NMLEGEIPQEL-MYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKW 509

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
           + +  +L  L LS+N+ SG IP  LG+   L  + L  N F G IP    +       N 
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569

Query: 241 SDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC 300
                     +  +              F+G    QL +L+     ++++ +  GH  P 
Sbjct: 570 IAGKRYVYIKNDGMKKEC--HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLS 360
            DN                                                       + 
Sbjct: 628 FDN----------------------------------------------------NGSMM 635

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK 420
            LD+SYN L G IP +IG++  +  LNL +N+++GSIP    +L+ +  LDLS NKLDG+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 421 IPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKAS 480
           IP  +  L  L   ++++NNLSG IPE   QF TF  + +  NP LCG PLP+     A 
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754

Query: 481 PATEPKTS 488
                + S
Sbjct: 755 GYAHHQRS 762

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  281 bits (721), Expect = 3e-86
 Identities = 129/441 (29%), Positives = 205/441 (46%), Gaps = 68/441 (15%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH---KSLMLLDVSN 73
           L+F+ +S   L+             LE   L  NS+ G  ++          L  L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 74  NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHL 133
           N + G +   +     +L++ ++S N F + IP   G+ + L  LD+S N+L+G+    +
Sbjct: 188 NKISGDVD--VSR-CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI 243

Query: 134 AMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR-EILESLS-KCSSLEGLY 191
           +  C +L+ L +S+N   G + P    L +L+ L L  N F  EI + LS  C +L GL 
Sbjct: 244 S-TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQILNISDNNISG-IY 249
           LS N+  G +P + G+ S+L+ + L  N+F G +PM+   ++  L++L++S N  SG + 
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

Query: 250 HHASILSLSKDQLVLAHNNFEGEVPIQLCQ--LNKLQLIDLSNNILSGHIPPCLDNTTLH 307
              + LS S   L L+ NNF G +   LCQ   N LQ + L NN  +G IPP L N    
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN---- 416

Query: 308 ESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYN 367
                                                            S L  L LS+N
Sbjct: 417 ------------------------------------------------CSELVSLHLSFN 428

Query: 368 KLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427
            L G IP  +G+L++++ L L  N L G IP     +K +++L L +N L G+IP  L  
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 428 LNTLAVFNVAHNNLSGKIPEW 448
              L   ++++N L+G+IP+W
Sbjct: 489 CTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  273 bits (701), Expect = 3e-83
 Identities = 116/461 (25%), Positives = 186/461 (40%), Gaps = 67/461 (14%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           L+ + +S   L+G+F   +    T+L+   + +N   G   +P    KSL  L ++ N  
Sbjct: 225 LQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKF 281

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
            G IP  +     +L   ++S N F  ++P  FG+ + L SL LS+N  +GE+P    + 
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLT-NLRRLQLDGNHFR-EILESLSKC--SSLEGLYL 192
              L+ L LS N   G L     NL+ +L  L L  N+F   IL +L +   ++L+ LYL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA 252
            +N  +GKIP  L N S L  + L  N+  G IP     L  L+ L +  N + G     
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQ 460

Query: 253 SILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI 311
            ++ +   + L+L  N+  GE+P  L     L  I LSNN L+G IP  +          
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-------- 512

Query: 312 DTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG 371
                                                       +  L+ L LS N   G
Sbjct: 513 --------------------------------------------LENLAILKLSNNSFSG 528

Query: 372 QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL 431
            IP ++G+   +  L+L+ N   G+IP+         S  ++ N + GK  + +      
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMK 584

Query: 432 AVFNVAHN--NLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
              + A N     G   E   + +T N  +     +     
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  260 bits (666), Expect = 2e-78
 Identities = 132/441 (29%), Positives = 192/441 (43%), Gaps = 46/441 (10%)

Query: 20  VRLSHLNLNGEFP--NWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQ 77
           + LS   LN  F   +  L + T LES FL N+ + G  +    C  SL  LD+S N+L 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLS 113

Query: 78  GHIPVK--IGDFLPSLKYFNISMNAFDSSIPTS-FGNMNFLISLDLSNNQLTGEIPEHLA 134
           G +     +G     LK+ N+S N  D     S    +N L  LDLS N ++G       
Sbjct: 114 GPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 135 M--GCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYL 192
           +  GC +L++L +S N + G +        NL  L +  N+F   +  L  CS+L+ L +
Sbjct: 173 LSDGCGELKHLAISGNKISGDV-DV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 230

Query: 193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA 252
           S N LSG   R +   + L+ + +  N F GPIP    +  SLQ L++++N  +G     
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDF 288

Query: 253 SILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP-CLDN-TTLHES 309
              +      L L+ N+F G VP      + L+ + LS+N  SG +P   L     L   
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 310 YIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL 369
            +       S   F  E         + E+    + +            L  LDLS N  
Sbjct: 349 DL-------SFNEFSGE---------LPESLTNLSAS------------LLTLDLSSNNF 380

Query: 370 IGQIPPQIGN--LTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427
            G I P +       +Q L L  N  TG IP T SN   + SL LS+N L G IP  L  
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 428 LNTLAVFNVAHNNLSGKIPEW 448
           L+ L    +  N L G+IP+ 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  229 bits (587), Expect = 4e-67
 Identities = 98/402 (24%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 60  IHCH-KSLMLLDVSNNNLQ---GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL 115
           + C    +  +D+S+  L      +   +   L  L+   +S +  + S+   F     L
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHINGSVS-GFKCSASL 102

Query: 116 ISLDLSNNQLTGEIPEHLAMG-CVDLEYLLLSNNSLEGHL-FPRNFNLTNLRRLQLDGNH 173
            SLDLS N L+G +    ++G C  L++L +S+N+L+          L +L  L L  N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 174 FR----EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF 229
                         C  L+ L +S N +SG +   +     L+ + +  N+F   IP   
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FL 219

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDL 288
               +LQ L+IS N +SG +   +I + ++   L ++ N F G +P     L  LQ + L
Sbjct: 220 GDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSL 276

Query: 289 SNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
           + N  +G I                  P+    +                          
Sbjct: 277 AENKFTGEI------------------PDFLSGAC------------------------- 293

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP-STFSNLKHI 407
                     L+ LDLS N   G +PP  G+ + +++L LS NN +G +P  T   ++ +
Sbjct: 294 --------DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 408 KSLDLSYNKLDGKIPLQLVELNT-LAVFNVAHNNLSGKIPEW 448
           K LDLS+N+  G++P  L  L+  L   +++ NN SG I   
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  225 bits (577), Expect = 1e-65
 Identities = 112/449 (24%), Positives = 164/449 (36%), Gaps = 113/449 (25%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
            +       LE + LS+ ++NG                                C  SL 
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVS--------------------------GFKCSASLT 103

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            LD+S N+L G +                          TS G+ + L  L++S+N L  
Sbjct: 104 SLDLSRNSLSGPVT-----------------------TLTSLGSCSGLKFLNVSSNTLDF 140

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFP---RNFNLTNLRRLQLDGNHFREILESLSKC 184
                  +    LE L LS NS+ G        +     L+ L + GN     +  +S+C
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRC 199

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
            +LE L +S NN S  IP +LG+ S LQH+ +  N   G           L++LNIS N 
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 245 ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC-QLNKLQLIDLSNNILSGHIPPCLDN 303
             G      + SL    L LA N F GE+P  L    + L  +DLS N   G +PP   +
Sbjct: 259 FVGPIPPLPLKSLQ--YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
                                                                S L  L 
Sbjct: 317 ----------------------------------------------------CSLLESLA 324

Query: 364 LSYNKLIGQIPPQ-IGNLTRIQTLNLSYNNLTGSIPSTFSNLK-HIKSLDLSYNKLDGKI 421
           LS N   G++P   +  +  ++ L+LS+N  +G +P + +NL   + +LDLS N   G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 422 PLQL--VELNTLAVFNVAHNNLSGKIPEW 448
              L     NTL    + +N  +GKIP  
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  220 bits (564), Expect = 5e-68
 Identities = 87/378 (23%), Positives = 131/378 (34%), Gaps = 89/378 (23%)

Query: 104 SIPTSFGNMNFLIS----LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG--HLFPR 157
            I    GN   L S     D  N    G + +        +  L LS  +L     +   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 158 NFNLTNLRRLQL-DGNHFR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
             NL  L  L +   N+    I  +++K + L  LY++  N+SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
              N   G +P     L +L  +                            N   G +P 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGIT------------------------FDGNRISGAIPD 167

Query: 276 QLCQLNKL-QLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEK 334
                +KL   + +S N L+G IPP   N  L                            
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------------------------- 199

Query: 335 KIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT 394
                                    + +DLS N L G      G+    Q ++L+ N+L 
Sbjct: 200 -------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 395 GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFAT 454
             +       K++  LDL  N++ G +P  L +L  L   NV+ NNL G+IP+       
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292

Query: 455 FNESSYEGNPFLCGLPLP 472
           F+ S+Y  N  LCG PLP
Sbjct: 293 FDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (448), Expect = 4e-51
 Identities = 82/356 (23%), Positives = 128/356 (35%), Gaps = 88/356 (24%)

Query: 49  NNSLPGLFLLPIHCHKSLMLLDVSNNNLQG--HIPVKIGDFLPSLKYFNIS-MNAFDSSI 105
           N +  G+          +  LD+S  NL     IP  + + LP L +  I  +N     I
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93

Query: 106 PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNL 164
           P +   +  L  L +++  ++G IP+ L+     L  L  S N+L G L P +  +L NL
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTL-PPSISSLPNL 151

Query: 165 RRLQLDGNHFR-EILESLSKCSSL-EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
             +  DGN     I +S    S L   + +S N L+GKIP    NL+ L  + L  N  E
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
           G   + F    + Q ++                        LA N+   ++  ++     
Sbjct: 211 GDASVLFGSDKNTQKIH------------------------LAKNSLAFDLG-KVGLSKN 245

Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
           L  +DL NN + G +P  L                                         
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQ--------------------------------------- 266

Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP 398
                        + +L  L++S+N L G+I PQ GNL R      + N      P
Sbjct: 267 -------------LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  168 bits (429), Expect = 3e-48
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 17/288 (5%)

Query: 22  LSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLP--IHCHKSLMLLDVSN-NNLQG 78
             +    G   +       ++ +  L   +LP  + +P  +     L  L +   NNL G
Sbjct: 33  CCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 79  HIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCV 138
            IP  I   L  L Y  I+      +IP     +  L++LD S N L+G +P  ++    
Sbjct: 92  PIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LP 149

Query: 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRR-LQLDGNHFR-EILESLSKCSSLEGLYLSDNN 196
           +L  +    N + G +     + + L   + +  N    +I  + +   +L  + LS N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG-IYHHASIL 255
           L G      G+    Q I L +N     +  +     +L  L++ +N I G +     + 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL--PQGLT 265

Query: 256 SLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL--SGHIPPC 300
            L     L ++ NN  GE+P Q   L +  +   +NN       +P C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (397), Expect = 1e-43
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 17  LEFVRLSHLN-LNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
           L F+ +  +N L G  P  +    T+L   ++ + ++ G     +   K+L+ LD S N 
Sbjct: 78  LNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI-SLDLSNNQLTGEIPEHLA 134
           L G +P  I   LP+L       N    +IP S+G+ + L  S+ +S N+LTG+IP    
Sbjct: 137 LSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF- 194

Query: 135 MGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSD 194
              ++L ++ LS N LEG       +  N +++ L  N     L  +    +L GL L +
Sbjct: 195 -ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253

Query: 195 NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
           N + G +P+ L  L  L  + +  N+  G IP     L    +   ++N 
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHCHKSLMLLDV 71
           +L FV LS   L G+       ++   +   L  NSL      + L      K+L  LD+
Sbjct: 198 NLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGLS-----KNLNGLDL 251

Query: 72  SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP 130
            NN + G +P  +   L  L   N+S N     IP   GN+        +NN+     P
Sbjct: 252 RNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  191 bits (488), Expect = 9e-54
 Identities = 84/455 (18%), Positives = 154/455 (33%), Gaps = 45/455 (9%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
               F     L  + +    ++   P  L +    L+   L +N L  L         +L
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
             L + +N++Q            +L   ++S N   S+   +   +  L  L LSNN++ 
Sbjct: 100 TELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 127 GEIPEHLA-MGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR----EILES 180
               E L       L+ L LS+N ++    P  F  +  L  L L+         E L  
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSM--LQHIILPENHFEGPIPMEFCQLDSLQIL 238
               +S+  L LS++ LS         L    L  + L  N+        F  L  L+  
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 239 NISDNNISGIYHHA-------SILSLSK--DQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
            +  NNI  ++ H+         L+L +   +  ++  +           L  L+ +++ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 290 NNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY 349
           +N + G           +  Y+  S+  +S  +  +E F                     
Sbjct: 338 DNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETF--------------------- 375

Query: 350 TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP-STFSNLKHIK 408
                  S L  L+L+ NK+          L  ++ L+L  N +   +    +  L++I 
Sbjct: 376 --VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 409 SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
            + LSYNK           + +L    +    L  
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (483), Expect = 6e-53
 Identities = 90/477 (18%), Positives = 151/477 (31%), Gaps = 69/477 (14%)

Query: 17  LEFVRLSHLNLNGEFPNWLLE-NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
           +  + LS+  L+       L    T L    L  N+L  +          L    +  NN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 76  LQGHIPVKIGDFLPSLKYFN---------ISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
           +Q      +   L +++Y N         IS+ +       SF  +  L  L++ +N + 
Sbjct: 284 IQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFP----RNFNLTNLRRLQLDGNHFREIL-ESL 181
           G        G ++L+YL LSN+             +   + L  L L  N   +I  ++ 
Sbjct: 343 GIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 182 SKCSSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
           S    LE L L  N +  ++       L  +  I L  N +       F  + SLQ L +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 241 SDNNISGIYHHASIL-SLSKDQ-LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
               +  +    S    L     L L++NN        L  L KL+++DL +N L+  + 
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-RLW 520

Query: 299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISY 358
              +           S                                            
Sbjct: 521 KHANPGGPIYFLKGLSH------------------------------------------- 537

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L  L+L  N           +L  ++ ++L  NNL     S F+N   +KSL+L  N + 
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 419 GKIPLQL-VELNTLAVFNVAHNNLSGKIP--EWTAQFA--TFNESSYEGNPFLCGLP 470
                        L   ++  N          W   +   T        + +LC  P
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (469), Expect = 4e-51
 Identities = 95/453 (20%), Positives = 158/453 (34%), Gaps = 30/453 (6%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
            E    SHL L  + P+ L  N T L    L +N L  L       +  L  LDV  N +
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
               P      LP LK  N+  N        +F     L  L L +N +           
Sbjct: 62  SKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-K 119

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE---SLSKCSSLEGLYLS 193
             +L  L LS+N L          L NL+ L L  N  + +      +   SSL+ L LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC---QLDSLQILNISDNNISGIYH 250
            N +    P     +  L  + L        +  + C      S++ L++S++ +S    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-S 238

Query: 251 HASILSLSKDQLV---LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN---- 303
           + + L L    L    L++NN           L +L+   L  N +       L      
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE---TFKFTTKNIAYTYRGRVISYLS 360
             L+     T    S  +    + F+F   K ++             +  + G  +  L 
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG--LINLK 356

Query: 361 ELDLSYNKL-IGQIPPQIG---NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
            L LS +   +  +  +       + +  LNL+ N ++      FS L H++ LDL  N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 417 LDGKIPLQ-LVELNTLAVFNVAHNNLSGKIPEW 448
           +  ++  Q    L  +    +++N         
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (468), Expect = 5e-51
 Identities = 85/490 (17%), Positives = 145/490 (29%), Gaps = 72/490 (14%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLF---LLPIHCHKSLMLLDVSN 73
           L+ + LS   +    P        +L   FL N  L       L     + S+  L +SN
Sbjct: 173 LKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 74  NNLQGHIPVKIGDF-LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEH 132
           + L              +L   ++S N  +     SF  +  L    L  N +       
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 133 LAMGCVDLEYLLLSNNSLEGHLFPRNF---------NLTNLRRLQLDGNHFREILE-SLS 182
           L  G  ++ YL L  +  +  +   +           L  L  L ++ N    I     +
Sbjct: 292 LH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 183 KCSSLEGLYLSDNNLSGK--IPRWLGNLSM--LQHIILPENHFEGPIPMEFCQLDSLQIL 238
              +L+ L LS++  S +        +L+   L  + L +N         F  L  L++L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 239 NISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG-- 295
           ++  N I           L    ++ L++N +          +  LQ + L    L    
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 296 HIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY 349
             P             L  + I   + +                       +   K    
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDD---------------------MLEGLEK---- 505

Query: 350 TYRGRVISYLSELDLSYNKL--------IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF 401
                    L  LDL +N L         G     +  L+ +  LNL  N         F
Sbjct: 506 ---------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 402 SNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY- 460
            +L  +K +DL  N L+           +L   N+  N ++    +              
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 461 EGNPFLCGLP 470
             NPF C   
Sbjct: 617 RFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (456), Expect = 3e-49
 Identities = 99/465 (21%), Positives = 156/465 (33%), Gaps = 65/465 (13%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
           S   F    +L  + L   ++     N        L +  L +N L    L      ++L
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 67  MLLDVSNNNLQGHIPVKIGDF-LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
             L +SNN +Q     ++  F   SLK   +S N      P  F  +  L  L L+N QL
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 126 TGEIPEHLAMGCVD--LEYLLLSNNSLEG---HLFPRNFNLTNLRRLQLDGNHFREIL-E 179
              + E L +   +  +  L LSN+ L       F      TNL  L L  N+   +  +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGND 266

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN---------HFEGPIPMEFC 230
           S +    LE  +L  NN+       L  L  ++++ L  +                  F 
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPI----QLCQLNKLQL 285
            L  L+ LN+ DN+I GI        L     L L+++                 + L +
Sbjct: 327 WLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 286 IDLSNNILSGHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQET 339
           ++L+ N +S                 L  + I                            
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL---------------- 429

Query: 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG--SI 397
                              + E+ LSYNK +         +  +Q L L    L    S 
Sbjct: 430 -----------------ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 398 PSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           PS F  L+++  LDLS N +       L  L  L + ++ HNNL+
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  176 bits (449), Expect = 3e-48
 Identities = 82/403 (20%), Positives = 129/403 (32%), Gaps = 74/403 (18%)

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
           C  S  + D S+  L   +P    D   ++   N++ N        +F   + L SLD+ 
Sbjct: 2   CTVSHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE- 179
            N ++   PE        L+ L L +N L   L  + F   TNL  L L  N  ++I   
Sbjct: 58  FNTISKLEPELCQ-KLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF--CQLDSLQI 237
              K  +L  L LS N LS         L  LQ ++L  N  +     E       SL+ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 238 LNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLC---QLNKLQLIDLSNNIL 293
           L +S N I          ++ +   L L +      +  +LC       ++ + LSN+ L
Sbjct: 176 LELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 294 SGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353
           S                                                           
Sbjct: 235 STTSNTTFLGLKWTN--------------------------------------------- 249

Query: 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
                L+ LDLSYN L          L +++   L YNN+      +   L +++ L+L 
Sbjct: 250 -----LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 414 YN---------KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
            +          L          L  L   N+  N++ G    
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (442), Expect = 2e-47
 Identities = 94/473 (19%), Positives = 159/473 (33%), Gaps = 65/473 (13%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL--FLLPIHCHKS 65
            N F  Q +L  + LSH  L+             L+   L NN +  L    L I  + S
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG---NMNFLISLDLSN 122
           L  L++S+N ++   P      +  L    ++      S+            + +L LSN
Sbjct: 173 LKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 123 NQLTGEIPEHLA-MGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE- 179
           +QL+         +   +L  L LS N+L   +   +F  L  L    L+ N+ + +   
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 180 SLSKCSSLEGLYLSDN---------NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC 230
           SL    ++  L L  +         +L          L  L+H+ + +N   G     F 
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 231 QLDSLQILNISDNNISGIYHHASIL-SLSKDQLV---LAHNNFEGEVPIQLCQLNKLQLI 286
            L +L+ L++S++  S          SL+   L    L  N            L  L+++
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 287 DLSNNILSGHIPPCL--DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT 344
           DL  N +   +          + E Y+       S   +          +  + +F    
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYL-------SYNKY---------LQLTRNSFALVP 454

Query: 345 KNIAYTYRGRVISYLSELDLSYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
                         L  L L    L  +   P     L  +  L+LS NN+         
Sbjct: 455 S-------------LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 403 NLKHIKSLDLSYNKL--------DGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
            L+ ++ LDL +N L         G     L  L+ L + N+  N       E
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  173 bits (441), Expect = 3e-47
 Identities = 77/416 (18%), Positives = 147/416 (35%), Gaps = 25/416 (6%)

Query: 54  GLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN 113
            L  +P     ++ +L++++N L+             L   ++  N      P     + 
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLP 73

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGN 172
            L  L+L +N+L+    +  A  C +L  L L +NS++  +    F    NL  L L  N
Sbjct: 74  MLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHN 131

Query: 173 HFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLG--NLSMLQHIILPENHFEGPIPMEF 229
                 L +  +  +L+ L LS+N +       L     S L+ + L  N  +   P  F
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSKDQ---LVLAHNNFEGEVP--IQLCQLNKLQ 284
             +  L  L +++  +         L L+      L L+++             +   L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 285 LIDLSNNILSGHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338
           ++DLS N L+                 L  + I      S    F        +    Q 
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 339 -TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS- 396
            +     K   ++++   +  L  L++  N + G        L  ++ L+LS +  +   
Sbjct: 312 ISLASLPKIDDFSFQW--LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 397 -IPSTFSNLKH--IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
               TF +L H  +  L+L+ NK+          L  L V ++  N +  ++    
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  141 bits (358), Expect = 4e-36
 Identities = 58/333 (17%), Positives = 112/333 (33%), Gaps = 28/333 (8%)

Query: 7   SPNFFYHQHDLEFVRLSH--------LNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLL 58
             +  +   ++ ++ L          L    +  ++  +    LE   + +N +PG+   
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 59  PIHCHKSLMLLDVSNNNLQGHIPVKIGDF----LPSLKYFNISMNAFDSSIPTSFGNMNF 114
                 +L  L +SN+       +    F       L   N++ N        +F  +  
Sbjct: 348 MFTGLINLKYLSLSNSFTSL-RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNH 173
           L  LDL  N++  E+      G  ++  + LS N     L   +F  + +L+RL L    
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVA 465

Query: 174 FREI---LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIIL--------PENHFE 222
            + +           +L  L LS+NN++      L  L  L+ + L         ++   
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLN 281
           G        L  L ILN+  N    I        L +   + L  NN             
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 282 KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTS 314
            L+ ++L  N+++            + + +D  
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 7e-26
 Identities = 47/245 (19%), Positives = 76/245 (31%), Gaps = 22/245 (8%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
             + F     LE + L    +  E           +   +L  N    L         SL
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 67  MLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
             L +    L+  +      F  L +L   ++S N   +        +  L  LDL +N 
Sbjct: 457 QRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI-LESLSK 183
           L                   L  ++  G        L++L  L L+ N F EI +E    
Sbjct: 516 LA-----------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC-QLDSLQILNISD 242
              L+ + L  NNL+        N   L+ + L +N         F     +L  L++  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 243 NNISG 247
           N    
Sbjct: 619 NPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 48/279 (17%), Positives = 78/279 (27%), Gaps = 70/279 (25%)

Query: 183 KCS-SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
           KC+ S E    S   L+ ++P  L   + +  + L  N         F +   L  L++ 
Sbjct: 1   KCTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 242 DNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL 301
            N IS +                              +L  L++++L +N LS       
Sbjct: 58  FNTISKLEPEL------------------------CQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 302 DNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRV 355
              T      L  + I                            F               
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNP---------------------FVKQKN---------- 122

Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH--IKSLDLS 413
              L  LDLS+N L          L  +Q L LS N +            +  +K L+LS
Sbjct: 123 ---LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQF 452
            N++    P     +  L    + +  L   + E     
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 9e-19
 Identities = 40/226 (17%), Positives = 74/226 (32%), Gaps = 17/226 (7%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLP--IHCHK 64
           +   +    ++  + LS+        N        L+   L   +L  +   P      +
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN--------AFDSSIPTSFGNMNFLI 116
           +L +LD+SNNN+       +   L  L+  ++  N        A           ++ L 
Sbjct: 481 NLTILDLSNNNIANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE 176
            L+L +N       E       +L+ + L  N+L         N  +L+ L L  N    
Sbjct: 540 ILNLESNGFDEIPVEVFK-DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 177 ILESL--SKCSSLEGLYLSDNNLSGKIP--RWLGNLSMLQHIILPE 218
           + + +      +L  L +  N          W  N     H  +PE
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 4   VAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLES--------NFLLNNSLPGL 55
           V  SP+ F    +L  + LS+ N+     + +LE   KLE           L  ++ PG 
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 56  FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL 115
            +  +     L +L++ +N           D L  LK  ++ +N  ++   + F N   L
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG-----HLFPRNFNLTNLRRLQLD 170
            SL+L  N +T    +       +L  L +  N  +        F    N T+    +L 
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646

Query: 171 GN 172
            +
Sbjct: 647 SH 648

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  184 bits (470), Expect = 2e-51
 Identities = 59/508 (11%), Positives = 138/508 (27%), Gaps = 103/508 (20%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNW----LLENNTKLESNFLLNNSL----PGLFL 57
           +   F  +    +F  L    +N +              K      L+N++      +  
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204

Query: 58  LPIHCHKSLMLLDVSNNNLQGHIPVKIGDF------------------LPSLKYFNISMN 99
           L       L    + N+        +  +                   L  L    +   
Sbjct: 205 L-----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 100 AFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG-------CVDLEYLLLSNNSLEG 152
              + +PT    +  +  ++++ N+                      ++ + +  N+L+ 
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 153 HLFPRNF-NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSML 211
                +   +  L  L+   N     L +      L  L L+ N ++     + G    +
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 212 QHIILPENHFEG-PIPMEFCQLDSLQILNISDNNISGIYHH------ASILSLSK-DQLV 263
           +++    N  +  P   +   +  +  ++ S N I  +          +         + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG-------HIPPCLDNTT------LHESY 310
           L++N             + L  I+L  N+L+               NT       L  + 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 311 IDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI 370
           +   S +   T+                                   YL  +DLSYN   
Sbjct: 500 LTKLSDDFRATTL---------------------------------PYLVGIDLSYNSF- 525

Query: 371 GQIPPQIGNLTRIQTLNLSY------NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424
            + P Q  N + ++   +        N      P   +    +  L +  N +   +  +
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584

Query: 425 LVELNTLAVFNVAHNNLSGKIPEWTAQF 452
           +     ++V ++  N        +   +
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  184 bits (469), Expect = 2e-51
 Identities = 65/454 (14%), Positives = 131/454 (28%), Gaps = 108/454 (23%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL--------FLLPIHCHKSLML 68
           L  V + +     + P +L +   +++   +  N              L      + + +
Sbjct: 251 LTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 69  LDVSNNNLQ-GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
           + +  NNL+   +   +   +  L       N        +FG+   L SL+L+ NQ+T 
Sbjct: 310 IYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITE 367

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF---NLTNLRRLQLDGNH--------FRE 176
            IP +       +E L  ++N L+    P  F   +++ +  +    N         F  
Sbjct: 368 -IPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 177 ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-------PIPMEF 229
           +  +  K  ++  + LS+N +S          S L  I L  N                F
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
                L  +++  N ++ +                           +   L  L  IDLS
Sbjct: 485 KNTYLLTSIDLRFNKLTKL-----------------------SDDFRATTLPYLVGIDLS 521

Query: 290 NNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
            N  S   P    N +TL                                          
Sbjct: 522 YNSFSK-FPTQPLNSSTL------------------------------------------ 538

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIK 408
                +     ++ D   N+ + + P  I     +  L +  N++         N+    
Sbjct: 539 -----KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---S 590

Query: 409 SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            LD+  N         +       ++ + ++   
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (462), Expect = 2e-50
 Identities = 74/473 (15%), Positives = 139/473 (29%), Gaps = 87/473 (18%)

Query: 17  LEFVRLSHLNLNGEFPNWL-LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
            E  +   ++    F ++   E+ + L  + + ++                  +   +NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
           +   +   +   L  L+ F +  + F +               +    Q           
Sbjct: 195 ITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWD- 246

Query: 136 GCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE---------ILESLSKCSS 186
              DL  + + N      L      L  ++ + +  N              L        
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 187 LEGLYLSDNNL-SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
           ++ +Y+  NNL +  +   L  +  L  +    N  EG +P  F     L  LN++ N I
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 246 SGIYHHASILSLSKD--QLVLAHNNFEGEVP-IQLCQLNKLQLIDLSNNILSG------- 295
           + I   A+    ++    L  AHN  +          ++ +  ID S N +         
Sbjct: 366 TEI--PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 296 HIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY 349
            + P            L  + I     E   T                            
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTG--------------------------- 456

Query: 350 TYRGRVISYLSELDLSYNKL-------IGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-TF 401
                  S LS ++L  N L       +        N   + +++L +N LT        
Sbjct: 457 -------SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 402 SNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF------NVAHNNLSGKIPEW 448
           + L ++  +DLSYN      P Q +  +TL  F      +   N    + PE 
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  179 bits (456), Expect = 2e-49
 Identities = 62/471 (13%), Positives = 129/471 (27%), Gaps = 93/471 (19%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSLPGLFL--LPIHC 62
           P+      +LE + L           +    +  N   E    +       F+   P   
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
              L+   ++++  Q  I                  N   + +  +   +  L    + N
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGN 215

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF-REILESL 181
           +    E            E               +  NL +L  +++       ++   L
Sbjct: 216 SPFVAENICEA------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 182 SKCSSLEGLYLSDNNL--------SGKIPRWLGNLSMLQHIILPENHF-EGPIPMEFCQL 232
                ++ + ++ N            +          +Q I +  N+    P+     ++
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 233 DSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQ-LNKLQLIDLSN 290
             L +L    N + G     +  S  K   L LA+N     +P   C    +++ +  ++
Sbjct: 330 KKLGMLECLYNQLEGK--LPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
           N L   IP   D  ++                                            
Sbjct: 387 NKLKY-IPNIFDAKSV-------------------------------------------- 401

Query: 351 YRGRVISYLSELDLSYNKL-------IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
                 S +S +D SYN++          + P       + ++NLS N ++      FS 
Sbjct: 402 ------SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 404 LKHIKSLDLSYNKLDG-------KIPLQLVELNTLAVFNVAHNNLSGKIPE 447
              + S++L  N L                    L   ++  N L+    +
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  168 bits (427), Expect = 2e-45
 Identities = 68/450 (15%), Positives = 136/450 (30%), Gaps = 84/450 (18%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLP----IHCHKSLMLLDVS 72
           +  + L     +G  P+  +   T+LE   L ++       L     I  + S       
Sbjct: 83  VTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 73  NNNLQGHIPVKIGDF-LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE 131
             + Q              L    I+ +    SI  S         +   +N +T  + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 132 HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLY 191
            +      L    + N+          +   N    Q     ++           L  + 
Sbjct: 201 AVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YKTEDLKWDNLKDLTDVE 255

Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHF--------EGPIPMEFCQLDSLQILNISDN 243
           + +     K+P +L  L  +Q I +  N          +     +    + +QI+ I  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 244 NISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD 302
           N+       S+  + K   L   +N  EG++P       KL  ++L+ N ++  IP    
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPA--- 370

Query: 303 NTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSEL 362
                                                  FT +             +  L
Sbjct: 371 -----------------------------------NFCGFTEQ-------------VENL 382

Query: 363 DLSYNKLIGQIPP--QIGNLTRIQTLNLSYNNLTG-------SIPSTFSNLKHIKSLDLS 413
             ++NKL   IP      +++ +  ++ SYN +          +  T     ++ S++LS
Sbjct: 383 SFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
            N++           + L+  N+  N L+ 
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (408), Expect = 6e-43
 Identities = 47/387 (12%), Positives = 110/387 (28%), Gaps = 84/387 (21%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAF----DSSIPTSFGNMNFLISLDLSNNQ 124
           L +      G +P  IG  L  L+   +  +          P                  
Sbjct: 86  LSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 125 LTGEIPEHLAMG-CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
                 ++       DL    ++++  +  +   +       ++    N+   + +++ +
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
            + L   Y+ ++    +           ++             +++  L  L  + + + 
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
                                       ++P  L  L ++QLI+++ N          D 
Sbjct: 260 PNL------------------------TKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
             L ++ +                                               +  + 
Sbjct: 296 QALADAPVGEK--------------------------------------------IQIIY 311

Query: 364 LSYNKLI-GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
           + YN L    +   +  + ++  L   YN L G +P+ F +   + SL+L+YN++   IP
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IP 369

Query: 423 LQLVE-LNTLAVFNVAHNNLSGKIPEW 448
                    +   + AHN L   IP  
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKY-IPNI 395

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  136 bits (345), Expect = 2e-34
 Identities = 42/365 (11%), Positives = 99/365 (27%), Gaps = 89/365 (24%)

Query: 94  FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH 153
           FN  ++ + +    S  +   +  L L     +G +P+ +     +LE L L ++  +  
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKV- 119

Query: 154 LFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSM--L 211
                             N      + +S   S E       +       +        L
Sbjct: 120 ------------------NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 212 QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG 271
               +  +  +  I            +    NNI+ +                       
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV----------------------- 198

Query: 272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFY 331
                + +L KL+   + N+                E      + +    +         
Sbjct: 199 --SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--------- 247

Query: 332 KEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
                                   +  L+++++     + ++P  +  L  +Q +N++ N
Sbjct: 248 ------------------------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 392 NLT--------GSIPSTFSNLKHIKSLDLSYNKL-DGKIPLQLVELNTLAVFNVAHNNLS 442
                          +     + I+ + + YN L    +   L ++  L +    +N L 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 443 GKIPE 447
           GK+P 
Sbjct: 344 GKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (336), Expect = 2e-33
 Identities = 56/311 (18%), Positives = 98/311 (31%), Gaps = 39/311 (12%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHCH 63
                    L  +   +  L G+ P     +  KL S  L  N +               
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFT---- 376

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS-------SIPTSFGNMNFLI 116
           + +  L  ++N L+    +     +  +   + S N   S        +  +      + 
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG------HLFPRNF-NLTNLRRLQL 169
           S++LSNNQ++    E  +     L  + L  N L             NF N   L  + L
Sbjct: 437 SINLSNNQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 170 DGNHFREILESL--SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE------NHF 221
             N   ++ +    +    L G+ LS N+ S   P    N S L+   +        N  
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASIL-SLSKDQLVLAHNNFEGEVPIQLCQL 280
               P       SL  L I  N+I  +  +  I  ++S   L +  N         +C  
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKV--NEKITPNIS--VLDIKDNPNISIDLSYVCPY 610

Query: 281 NKLQLIDLSNN 291
            +  +  L  +
Sbjct: 611 IEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 5e-26
 Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 38/276 (13%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLP-------I 60
            NF      +E +  +H  L      +  ++ + + +     N +  +            
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS-------SIPTSFGNMN 113
               ++  +++SNN +      ++      L   N+  N               +F N  
Sbjct: 430 FKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRN-FNLTNLRRLQLDGN 172
            L S+DL  N+LT    +  A     L  + LS NS     FP    N + L+   +   
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQ 546

Query: 173 HFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
                                 N    + P  +     L  + +  N     +  +    
Sbjct: 547 -----------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--T 586

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNN 268
            ++ +L+I DN    I        +     +L ++ 
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 7e-20
 Identities = 25/246 (10%), Positives = 57/246 (23%), Gaps = 54/246 (21%)

Query: 204 WLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLV 263
            L +   +  + L      G +P    QL  L++L +  +                    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV---------------- 119

Query: 264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSSPESSETS 322
               N     P  +      +                              +S       
Sbjct: 120 ----NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ--- 172

Query: 323 FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTR 382
                      K I+++ + T K              +++    N +   +   +  LT+
Sbjct: 173 -----------KSIKKSSRITLK-------------DTQIGQLSNNITF-VSKAVMRLTK 207

Query: 383 IQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           ++   +  +                   +  Y +      L+   L  L    V +    
Sbjct: 208 LRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 443 GKIPEW 448
            K+P +
Sbjct: 263 TKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 23/194 (11%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWL------LENNTKLESNFLLNNSLPGLFLLPIH 61
              F     L  + L    L     N L       +N   L S  L  N L  L      
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 62  CH-KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS------SIPTSFGNMNF 114
                L+ +D+S N+     P +  +   +LK F I               P        
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
           L  L + +N +   + E +     ++  L + +N                    L  +  
Sbjct: 568 LTQLQIGSNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 175 REILESLSKCSSLE 188
           ++I      C +L+
Sbjct: 624 QDI----RGCDALD 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (453), Expect = 2e-48
 Identities = 76/487 (15%), Positives = 133/487 (27%), Gaps = 100/487 (20%)

Query: 21  RLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           +L  +             +   +   +      N       L     K L  +++ N   
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-----KDLTDVELYNCPN 503

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDS---------SIPTSFGNMNFLISLDLSNNQLTG 127
              +P  + D LP L+  NI+ N   S          +         +    +  N L  
Sbjct: 504 MTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKCSS 186
                     V L  L   +N +             L  L+LD N   EI E   +    
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 187 LEGLYLSDNNLSGKIPRW--LGNLSMLQHIILPENHFEG-----PIPMEFCQLDSLQILN 239
           +EGL  S N L   IP      ++ ++  +    N            M+  +  +   + 
Sbjct: 621 VEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 240 ISDNNISGIYHHA-------SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
           +S N I              S + LS + +     N              L  IDL  N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYR 352
           L+  +      TTL                                              
Sbjct: 740 LTS-LSDDFRATTL---------------------------------------------- 752

Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSY------NNLTGSIPSTFSNLKH 406
                YLS +D+SYN      P Q  N ++++   + +      N +    P+  +    
Sbjct: 753 ----PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 407 IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS--YEGNP 464
           +  L +  N +  K+  +L     L + ++A N            +         Y+   
Sbjct: 808 LIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

Query: 465 FLCGLPL 471
            + G   
Sbjct: 865 DIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (439), Expect = 2e-46
 Identities = 72/465 (15%), Positives = 155/465 (33%), Gaps = 59/465 (12%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
           P+      +L+ +     +       +  E  T   S    +        + +   + L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 68  LLDVSNNNLQGH---IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
           L D+  + +  +    P+K    +        ++    + I  +   +  L  +  +N+ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQL-DGNHFREILESLSK 183
            T +         VD E           +      NL +L  ++L +  +  ++ + L  
Sbjct: 460 FTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 184 CSSLEGLYLSDNNLSG---------KIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLD 233
              L+ L ++ N             ++         +Q   +  N+ E  P      ++ 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ-LNKLQLIDLSNNI 292
            L +L+   N +  +    + + L+   L L +N  E E+P   C   ++++ +  S+N 
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTD--LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630

Query: 293 LSGHIPPCLDNTTLHE-SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
           L   IP   +  +++    +D S   +   S          + K                
Sbjct: 631 LKY-IPNIFNAKSVYVMGSVDFSY--NKIGSEGRNISCSMDDYK---------------- 671

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-------GSIPSTFSNL 404
                   S + LSYN++           + I T+ LS N +T             + N 
Sbjct: 672 ----GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 405 KHIKSLDLSYNKLDGKIP--LQLVELNTLAVFNVAHNNLSGKIPE 447
             + ++DL +NKL   +    +   L  L+  +V++N  S   P 
Sbjct: 728 YLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  162 bits (411), Expect = 7e-43
 Identities = 67/461 (14%), Positives = 126/461 (27%), Gaps = 106/461 (22%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLP-------- 59
              + +  DL  V L +     + P++L  +  +L+S  +  N       L         
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 60  -IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISL 118
                  + +  +  NNL+          +  L   +   N        +FG    L  L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF---NLTNLRRLQLDGNHFR 175
            L  NQ+  EIPE        +E L  S+N L+    P  F   ++  +  +    N   
Sbjct: 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 176 EILESLS------KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE------- 222
               ++S      K  +   + LS N +           S +  IIL  N          
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
            P    +     L  +++  N ++ +                           +   L  
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSL-----------------------SDDFRATTLPY 754

Query: 283 LQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341
           L  +D+S N  S   P    N + L                                   
Sbjct: 755 LSNMDVSYNCFS-SFPTQPLNSSQL----------------------------------- 778

Query: 342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF 401
                       +      + D   N+++ Q P  I     +  L +  N++        
Sbjct: 779 ------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826

Query: 402 SNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
             L     LD++ N         +       ++ + ++   
Sbjct: 827 PQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (383), Expect = 3e-39
 Identities = 62/443 (13%), Positives = 134/443 (30%), Gaps = 84/443 (18%)

Query: 22  LSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIP 81
           L+     G  P+  +   T+L+      +S      L      +  + +   + ++ H  
Sbjct: 330 LAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 82  VKIGDFLPSLKYFNISMNAFDS-----SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
               D+   L   ++  +A +       I            +    N++T  I + +   
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-QR 446

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
              L+ +  +N+         ++   N    +   N       S S    L  + L +  
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----EELSWSNLKDLTDVELYNCP 502

Query: 197 LSGKIPRWLGNLSMLQHIILPENHFEGP---------IPMEFCQLDSLQILNISDNNISG 247
              ++P +L +L  LQ + +  N              +  +      +QI  +  NN+  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 248 IYHHASILSLSKDQ-LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTL 306
               AS+  + K   L   HN     +        KL  + L  N +   IP        
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPE------- 612

Query: 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSY 366
                                          +   FT +             +  L  S+
Sbjct: 613 -------------------------------DFCAFTDQ-------------VEGLGFSH 628

Query: 367 NKLIGQIPP--QIGNLTRIQTLNLSYNNLTGSIPSTFS-----NLKHIKSLDLSYNKLDG 419
           NKL   IP      ++  + +++ SYN +     +           +  ++ LSYN++  
Sbjct: 629 NKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 420 KIPLQLVELNTLAVFNVAHNNLS 442
                    + ++   +++N ++
Sbjct: 688 FPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (371), Expect = 1e-37
 Identities = 52/421 (12%), Positives = 115/421 (27%), Gaps = 96/421 (22%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
            +  L ++    +G +P  IG  L  LK  +   ++   S              +   ++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHL---FPRNFNLTNLRRLQLDG--NHFREILE 179
           +     +        L    L  +++  +      +  +  +L+  Q+    N    I +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 180 SLSKCSSLEGLYLSDNNLSG-------------------KIPRWLGNLSMLQHIILPENH 220
           ++ + + L+ +Y +++  +                           NL  L  + L    
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL 280
               +P     L  LQ LNI+ N         +  +                +       
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT---------------RLADDEDTG 547

Query: 281 NKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
            K+Q+  +  N L    P       +                                  
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQKM---------------------------------- 572

Query: 341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPST 400
                             L  LD  +NK+  +     G   ++  L L YN +       
Sbjct: 573 ----------------VKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDF 614

Query: 401 FSNLKHIKSLDLSYNKLDGKIP--LQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNES 458
            +    ++ L  S+NKL   IP       +  +   + ++N +  +    +     +   
Sbjct: 615 CAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 459 S 459
           +
Sbjct: 674 N 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  120 bits (302), Expect = 8e-29
 Identities = 48/364 (13%), Positives = 101/364 (27%), Gaps = 87/364 (23%)

Query: 94  FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH 153
           FN  ++ +         N   +  L L+     G +P+ +     +L+ L    +S    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVS 362

Query: 154 LFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
                         +   +                 + +    +     + L    +LQ 
Sbjct: 363 GRLFGDEELTPDMSEERKHR----------------IRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273
            I      +         L   QI N++ N I+ I                         
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFI------------------------- 440

Query: 274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333
              + +L KLQ+I  +N+  +      +D    +  Y      E    S           
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSDYAKQYENEELSWSN---------- 489

Query: 334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNL 393
                                 +  L++++L     + Q+P  + +L  +Q+LN++ N  
Sbjct: 490 ----------------------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 394 TG---------SIPSTFSNLKHIKSLDLSYNKLDG-KIPLQLVELNTLAVFNVAHNNLSG 443
                       +         I+   + YN L+       L ++  L + +  HN +  
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586

Query: 444 KIPE 447
            +  
Sbjct: 587 HLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 6e-25
 Identities = 46/350 (13%), Positives = 99/350 (28%), Gaps = 54/350 (15%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE 176
           ++ +   +    I ++ A+  +  E L   N            +  N    +       +
Sbjct: 256 NVPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQ 314

Query: 177 ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQ 236
               L     + GL L+     G++P  +G L+ L+ +    +       +   +  +  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 237 ILNISDNNISGIYHHASILSLSKDQ-------LVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
           +     + I   Y    +    +          +  +   +         L   Q+ +L+
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 290 NNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
           N I    I   +   T L   Y   S                           FT  NIA
Sbjct: 435 NRI--TFISKAIQRLTKLQIIYFANS--------------------------PFTYDNIA 466

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIK 408
                       + +  Y K          NL  +  + L        +P    +L  ++
Sbjct: 467 --------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 409 SLDLSYNKLDG---------KIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
           SL+++ N+            ++         + +F + +NNL       +
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  169 bits (429), Expect = 5e-46
 Identities = 73/485 (15%), Positives = 143/485 (29%), Gaps = 82/485 (16%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNF----LLNNSLPGLFLLPIH 61
             P +F +  +LE + LS   +   +   L     ++        L  N +  +      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSI---PTSFGNMNFLISL 118
               L  L + NN    ++       L  L+   + +  F +           +  L +L
Sbjct: 199 -EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 119 DLSNNQLT------GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN 172
            +   +L        +I +       ++    L + ++E             + L+L   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNC 314

Query: 173 HFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH--FEGPIPMEFC 230
            F                 L+  +  G       +L  L+ + L  N   F+G       
Sbjct: 315 KF----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSKDQ-LVLAHNNFEGEVPIQ-LCQLNKLQLIDL 288
              SL+ L++S N +  +   ++ L L + + L   H+N +          L  L  +D+
Sbjct: 371 GTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 289 SNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
           S+           +                                              
Sbjct: 429 SHTHTRVAFNGIFNGL-------------------------------------------- 444

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407
                   S L  L ++ N       P I   L  +  L+LS   L    P+ F++L  +
Sbjct: 445 --------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY-EGNPFL 466
           + L++S+N            LN+L V + + N++     +    F +         N F 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 467 CGLPL 471
           C    
Sbjct: 557 CTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  165 bits (421), Expect = 6e-45
 Identities = 80/448 (17%), Positives = 144/448 (32%), Gaps = 38/448 (8%)

Query: 20  VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79
            +   LN   + P+ L  +   L+   L  N L  L          L +LD+S   +Q  
Sbjct: 12  YQCMELNFY-KIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 80  IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139
                   L  L    ++ N   S    +F  ++ L  L      L       +      
Sbjct: 68  EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 140 LEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREIL-ESLSKCSSLE----GLYLS 193
           L+ L +++N ++    P  F NLTNL  L L  N  + I    L     +      L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQ-LDSLQILNISDNNISGIYHHA 252
            N ++   P     +  L  + L  N     +     Q L  L++  +         +  
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 253 SIL--------SLSKDQLVLAHNN-FEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
                      +L+ ++  LA+ + +  ++      L  +    L +  +   +     N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN 303

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
                  +           F        K         FT+      +    +  L  LD
Sbjct: 304 FGWQHLELV----NCKFGQFPTLKLKSLKR------LTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 364 LSYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
           LS N L   G         T ++ L+LS+N +   + S F  L+ ++ LD  ++ L    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 422 PLQ-LVELNTLAVFNVAHNNLSGKIPEW 448
                + L  L   +++H +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (414), Expect = 6e-44
 Identities = 77/452 (17%), Positives = 147/452 (32%), Gaps = 39/452 (8%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
             + + LS   L     ++   +  +L+   L    +  +          L  L ++ N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
           +Q          L SL+          S      G++  L  L++++N +          
Sbjct: 88  IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 136 GCVDLEYLLLSNNSLEGHLFPRNFNLTNLR----RLQLDGNHFREILESLSKCSSLEGLY 191
              +LE+L LS+N ++         L  +      L L  N    I     K   L  L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 192 LSDNNLSGKIPR-WLGNLSMLQHIILPENHFEGPIPME---FCQLDSLQILNISDNNISG 247
           L +N  S  + +  +  L+ L+   L    F     +E      L+ L  L I +  ++ 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 248 IYHHASILSLSKD------QLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL 301
           + ++   +    +         L     E             Q ++L N          L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKL 324

Query: 302 DN-TTLHESYIDTSSPESSET----SFVD-EGFAFYKEKKIQETFKFTTKNIAYTYRGRV 355
            +   L  +     +  S        F+D        +    ++   TT           
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS---------- 374

Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSY 414
              L  LDLS+N +I  +      L +++ L+  ++NL      S F +L+++  LD+S+
Sbjct: 375 ---LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 415 NKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP 446
                        L++L V  +A N+      
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (409), Expect = 4e-43
 Identities = 81/460 (17%), Positives = 139/460 (30%), Gaps = 58/460 (12%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
              +     L  + L+   +            + L+    +  +L  L   PI   K+L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNM----NFLISLDLSNN 123
            L+V++N +Q     +    L +L++ ++S N   S   T    +       +SLDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE--- 179
            +    P       + L  L L NN    ++       L  L   +L    FR       
Sbjct: 188 PMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 180 -SLSKCSSLEGLYLSDNNLS------GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
              S    L  L + +  L+        I      L+ +    L     E      F   
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN 303

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
              Q L + +                K    L   + +G        L  L+ +DLS N 
Sbjct: 304 FGWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 293 LS--GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
           LS  G        TT    Y+D S                     +   F    +     
Sbjct: 359 LSFKGCCSQSDFGTT-SLKYLDLSFNGVI---------------TMSSNFLGLEQ----- 397

Query: 351 YRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409
                   L  LD  ++ L       +  +L  +  L++S+ +   +    F+ L  ++ 
Sbjct: 398 --------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 410 LDLSYNKLDGKIPLQ-LVELNTLAVFNVAHNNLSGKIPEW 448
           L ++ N            EL  L   +++   L    P  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 1e-39
 Identities = 79/464 (17%), Positives = 140/464 (30%), Gaps = 88/464 (18%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
                 H   L+ + ++H  +          N T LE                       
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH---------------------- 153

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYF----NISMNAFDSSIPTSFGNMNFLISLDLSN 122
             LD+S+N +Q      +   L  +       ++S+N  +   P +F  +  L  L L N
Sbjct: 154 --LDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRN 209

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH---LFPRNFNLTNLRRLQLDGNHFR---- 175
           N  +  + +    G   LE   L                  L  L  L ++         
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 176 ---EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
              +I++  +  +++    L    +              QH+ L    F     ++   L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 233 DSLQILNISDNNISGIYHHAS--ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290
             L   +    N        S   L LS++ L     +F+G           L+ +DLS 
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL-----SFKGCCSQSDFGTTSLKYLDLSF 382

Query: 291 NILSGHIPPCLDNTTLHE-----SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK 345
           N +       L    L       S +   S  S   S                       
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS----------------------- 419

Query: 346 NIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSI-PSTFSNL 404
                     +  L  LD+S+             L+ ++ L ++ N+   +  P  F+ L
Sbjct: 420 ----------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 405 KHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEW 448
           +++  LDLS  +L+   P     L++L V N++HNN        
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 2e-39
 Identities = 71/404 (17%), Positives = 136/404 (33%), Gaps = 27/404 (6%)

Query: 59  PIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISL 118
           P       +       N    IP    +   S K  ++S N        SF +   L  L
Sbjct: 2   PCVEVVPNITYQCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI 177
           DLS  ++              L  L+L+ N ++  L    F  L++L++L     +   +
Sbjct: 58  DLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115

Query: 178 LE-SLSKCSSLEGLYLSDNNL-SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL 235
               +    +L+ L ++ N + S K+P +  NL+ L+H+ L  N  +     +   L  +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 236 QI----LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ-LNKLQLIDLSN 290
            +    L++S N ++ I    +   +   +L L +N     V     Q L  L++  L  
Sbjct: 176 PLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 291 NILSGHIPPCLDN----TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKN 346
                       +      L    I+       +    D    F     +  +F   +  
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS-SFSLVSVT 293

Query: 347 IAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH 406
           I              L+L   K       ++ +L       L++ +  G    +  +L  
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPS 348

Query: 407 IKSLDLSYNKLD--GKIPLQLVELNTLAVFNVAHNNLSGKIPEW 448
           ++ LDLS N L   G          +L   +++ N +      +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  144 bits (364), Expect = 4e-37
 Identities = 74/405 (18%), Positives = 136/405 (33%), Gaps = 69/405 (17%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
            +E  RL++L+   +    L    T + S  L++ ++  +       +     L++ N  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCK 315

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
                       L SLK    + N        S  ++  L  LDLS N L+ +     + 
Sbjct: 316 FGQFPT----LKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 136 -GCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI--LESLSKCSSLEGLYL 192
            G   L+YL LS N +   +      L  L  L    ++ +++          +L  L +
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI-PMEFCQLDSLQILNISDNNISGIYHH 251
           S  +           LS L+ + +  N F+    P  F +L +L  L++S   +  +   
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SP 487

Query: 252 ASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESY 310
            +  SLS    L ++HNNF          LN LQ++D S N +       L +       
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH------- 540

Query: 311 IDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI 370
                                                         S L+ L+L+ N   
Sbjct: 541 --------------------------------------------FPSSLAFLNLTQNDFA 556

Query: 371 GQIPPQ--IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
                Q  +  +   + L +    +  + PS    +  + SL+++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 1e-28
 Identities = 59/292 (20%), Positives = 96/292 (32%), Gaps = 39/292 (13%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNG-EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHK 64
            +         LEF+ LS   L+     +      T L+   L  N +  +    +   +
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-E 396

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
            L  LD  ++NL+      +   L +L Y +IS      +    F  ++ L  L ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKC 184
                   +     +L +L LS   LE                            + +  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQ-----------------------LSPTAFNSL 493

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL-DSLQILNISDN 243
           SSL+ L +S NN           L+ LQ +    NH       E      SL  LN++ N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 244 NISGIYHHASILS--LSKDQLVLAHNNFEGEVPIQL-----------CQLNK 282
           + +    H S L     + QL++     E   P              CQ+NK
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQMNK 605

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (416), Expect = 4e-44
 Identities = 89/430 (20%), Positives = 149/430 (34%), Gaps = 60/430 (13%)

Query: 21  RLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHI 80
            L+  ++ G  P        +  +     N L     L     +SL L    + + +   
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 81  PVKI-GDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139
           P    G    S++  N+  + F +    +F   + L  LDL+   L+ E+P  L  G   
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLST 302

Query: 140 LEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREIL--ESLSKCSSLEGLYLSDNN 196
           L+ L+LS N  E  L   +  N  +L  L + GN  R  L    L    +L  L LS ++
Sbjct: 303 LKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 197 L--SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI 254
           +  S      L NLS LQ + L  N         F +   L++L+++   +      +  
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 255 LSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDT 313
            +L     L L+H+  +         L  LQ ++L  N          +           
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN----------- 470

Query: 314 SSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQI 373
                                    + +   +             L  L LS+  L    
Sbjct: 471 -------------------------SLQTLGR-------------LEILVLSFCDLSSID 492

Query: 374 PPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV 433
                +L  +  ++LS+N LT S     S+LK I  L+L+ N +   +P  L  L+    
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRT 551

Query: 434 FNVAHNNLSG 443
            N+  N L  
Sbjct: 552 INLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 1e-43
 Identities = 63/394 (15%), Positives = 118/394 (29%), Gaps = 66/394 (16%)

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120
              +     +  N  L   IP   G    S +    S N   +   T+F  +  L  LDL
Sbjct: 9   IEKEVNKTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL-E 179
           +  Q+     +                            +   L  L L  N    +   
Sbjct: 65  TRCQIYWIHEDTFQ-------------------------SQHRLDTLVLTANPLIFMAET 99

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
           +LS   +L+ L+     +S      L N   L+ + L  NH       +    + L++L+
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 240 ISDNNISGIYHHA--SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI 297
             +N I  +      S+   +   L L  N+    +          Q ++         I
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 298 PPCLDNTTLHE----SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353
              L N+T+      ++ D    + S   F                             G
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVF----------------------------EG 250

Query: 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
                +  ++L  +             + +Q L+L+  +L+  +PS    L  +K L LS
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
            NK +    +      +L   ++  N    ++  
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (402), Expect = 3e-42
 Identities = 85/448 (18%), Positives = 145/448 (32%), Gaps = 16/448 (3%)

Query: 15  HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN 74
           +  E +  S   L     N        L    L    +  +          L  L ++ N
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 75  NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA 134
            L   +         +LK+         S       N   L SL L +N ++  I     
Sbjct: 92  PLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKG 149

Query: 135 MGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLD--GNHFREILESLSKCSSLEGLY 191
                L+ L   NN++  +L   +  +L     L L+  GN    I       +  + L 
Sbjct: 150 FPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 192 LSDNNLSGKIPRWLGN--LSMLQHIILPENHFEGPIPMEFCQLD--SLQILNISDNNISG 247
                    I + L N  +  L      +   E   P  F  L   S++ +N+  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 248 IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT-L 306
           I  +         +L L   +   E+P  L  L+ L+ + LS N           N   L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSY 366
               I  ++      +   E     +E  +      T+       R   +S+L  L+LSY
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN--LSHLQSLNLSY 385

Query: 367 NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSYNKLDGKIPLQL 425
           N+ +           +++ L+L++  L      S F NL  +K L+LS++ LD       
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 426 VELNTLAVFNVAHNNLSGKIPEWTAQFA 453
             L  L   N+  N+      + T    
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (401), Expect = 4e-42
 Identities = 87/461 (18%), Positives = 156/461 (33%), Gaps = 61/461 (13%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
            + F  QH L+ + L+  N         L     L+  F +   +  +  +P+H  K+L 
Sbjct: 74  EDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL--ISLDLSNNQL 125
            L + +N++   I +  G     LK  +   NA          ++     +SL+L+ N +
Sbjct: 133 SLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 126 TGEIPEHLAMGCVDLEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFREILESL-- 181
            G  P   A      + L          +F   +N  + +L     +     +I  ++  
Sbjct: 192 AGIEPG--AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 182 -SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
                S+E + L  +             S LQ + L   H    +P     L +L+ L +
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVL 308

Query: 241 SDNNISGIYHHASILSLSKDQ-LVLAHNNFEGEVPIQ-LCQLNKLQLIDLSNNIL--SGH 296
           S N    +    S  +      L +  N    E+    L  L  L+ +DLS++ +  S  
Sbjct: 309 SANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 297 IPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
               L N +      L  +   +   E                      FK   +     
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTE---------------------AFKECPQ----- 401

Query: 351 YRGRVISYLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409
                   L  LDL++ +L  +       NL  ++ LNLS++ L  S    F  L  ++ 
Sbjct: 402 --------LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 410 LDLSYNKLDGKIPLQ---LVELNTLAVFNVAHNNLSGKIPE 447
           L+L  N        +   L  L  L +  ++  +LS     
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 1e-41
 Identities = 79/453 (17%), Positives = 148/453 (32%), Gaps = 60/453 (13%)

Query: 12  YHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDV 71
             +   +     +L LN E P  L  +   L       N LP +         +L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 72  SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE 131
           +   +   I          L    ++ N       T+      L  L      ++     
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 132 HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI----LESLSKCSSL 187
            L      LE L L +N +     P+ F    L+ L    N    +    + SL + ++L
Sbjct: 124 PLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP--MEFCQLDSLQILNISDNNI 245
             L L+ N+++G I     + ++ Q +          I   ++   + SL +    D + 
Sbjct: 183 S-LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 246 SGIYHHA--SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
             I       +  +S + + L  + F           + LQ +DL+   LS  +P  L  
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 304 TT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS 357
            +      L  +  +                          +                  
Sbjct: 300 LSTLKKLVLSANKFENLCQI---------------------SASNFPS------------ 326

Query: 358 YLSELDLSYNKLIGQIPPQ-IGNLTRIQTLNLSYNNLTGS--IPSTFSNLKHIKSLDLSY 414
            L+ L +  N    ++    + NL  ++ L+LS++++  S        NL H++SL+LSY
Sbjct: 327 -LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 415 NKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
           N+          E   L + ++A   L  K  +
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (394), Expect = 4e-41
 Identities = 90/480 (18%), Positives = 157/480 (32%), Gaps = 58/480 (12%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIH--CHK 64
                ++Q  LE + L   N              KL+     NN++  L    +      
Sbjct: 121 DFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNF--LISLDLSN 122
           + + L+++ N++   I     D     +  N         I     N     L      +
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 123 NQLTGEIPEHLAMGC-VDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILES 180
                  P      C + +E + L  +     +    F   + L+ L L   H  E+   
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQILN 239
           L   S+L+ L LS N           N   L H+ +  N     +       L++L+ L+
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 240 ISDNNISGIYHHA-SILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI 297
           +S ++I         + +LS    L L++N           +  +L+L+DL+   L    
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 298 PP-CLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
                 N        L  S +D SS +                      F          
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQ---------------------LFDGLPA----- 450

Query: 351 YRGRVISYLSELDLSYNKL---IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407
                   L  L+L  N       Q    +  L R++ L LS+ +L+      F++LK +
Sbjct: 451 --------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
             +DLS+N+L       L  L  +   N+A N++S  +P      +     +   NP  C
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (348), Expect = 5e-35
 Identities = 78/454 (17%), Positives = 140/454 (30%), Gaps = 62/454 (13%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENN-TKLESNFLLNNSLPGL--FLLPIHCH 63
            P  F      + +              L  +    L      +     +   +    C 
Sbjct: 195 EPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
            S+  +++  +     I          L+  +++     S +P+    ++ L  L LS N
Sbjct: 254 MSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSAN 311

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI---LE 179
           +    + +  A     L +L +  N+    L      NL NLR L L  +          
Sbjct: 312 KFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQIL 238
            L   S L+ L LS N               L+ + L     +       F  L  L++L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 239 NISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQ---LCQLNKLQLIDLSNNILS 294
           N+S + +           L     L L  N+F      +   L  L +L+++ LS   LS
Sbjct: 431 NLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 295 GHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
                   +        L  + + +SS E           A    K I            
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIE-----------ALSHLKGIY----------- 527

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIK 408
                        L+L+ N +   +P  +  L++ +T+NL  N L  +     SN+  ++
Sbjct: 528 -------------LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLE 570

Query: 409 SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
               +  KL+            L    ++   LS
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (256), Expect = 3e-23
 Identities = 50/244 (20%), Positives = 80/244 (32%), Gaps = 25/244 (10%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNG-EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHK 64
                  +  +L  + LSH ++   +  N  L N + L+S  L  N    L         
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
            L LLD++   L+          L  LK  N+S +  D S    F  +  L  L+L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL-ESLSK 183
                                  NSL+         L  L  L L       I   + + 
Sbjct: 461 FPKGNI--------------QKTNSLQ--------TLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
              +  + LS N L+      L +L  + ++ L  NH    +P     L   + +N+  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 244 NISG 247
            +  
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK 420
             +     L  +IP  + N T  + L  S+N L     +TFS L ++  LDL+  ++   
Sbjct: 16  TYNCENLGL-NEIPGTLPNST--ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 421 IPLQLVELNTLAVFNVAHNNLSGKIPEW 448
                   + L    +  N L       
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETA 100

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  146 bits (370), Expect = 6e-38
 Identities = 76/446 (17%), Positives = 148/446 (33%), Gaps = 37/446 (8%)

Query: 20  VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79
            +     L+ + P+ +  +   ++   L  N L  L          L  LD+S   ++  
Sbjct: 16  YQCMDQKLS-KVPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 80  IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139
                   L  L    ++ N   S  P SF  +  L +L     +L       +    + 
Sbjct: 72  EDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLIT 129

Query: 140 LEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI----LESLSKCS-SLEGLYLS 193
           L+ L +++N +     P  F NLTNL  + L  N+ + I    L+ L +       L +S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQ-LDSLQILNISDNNISGIYHHA 252
            N +     +    +  L  + L  N     I     Q L  L +  +         +  
Sbjct: 190 LNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 253 SI--------LSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNT 304
                       ++ D+  L + N   +  ++   L  +  + L+   +  ++     + 
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHF 307

Query: 305 TLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDL 364
                 I           F      F K      +   T    + +++   +  LS LDL
Sbjct: 308 KWQSLSII----RCQLKQFPTLDLPFLK------SLTLTMNKGSISFKKVALPSLSYLDL 357

Query: 365 SYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
           S N L   G           ++ L+LS+N     + + F  L+ ++ LD  ++ L     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 423 LQ-LVELNTLAVFNVAHNNLSGKIPE 447
               + L  L   ++++ N       
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (369), Expect = 9e-38
 Identities = 73/429 (17%), Positives = 136/429 (31%), Gaps = 79/429 (18%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           L  + L     +       L+N   L  + L+         L I     +  L       
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV---- 261

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
                        ++  F ++     S     F  +  + ++ L+   +   + +     
Sbjct: 262 -------------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDV--PK 305

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
               + L +    L+        +L  L+ L L  N    I        SL  L LS N 
Sbjct: 306 HFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNA 361

Query: 197 LSGKIPR--WLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI 254
           LS            + L+H+ L  N     +   F  L+ LQ L+   + +  +   ++ 
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 255 LSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDT 313
           LSL K   L +++ N + +       L  L  + ++ N    +                 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN------------- 467

Query: 314 SSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQI 373
                           F     +                         LDLS  +L    
Sbjct: 468 ---------------VFANTTNLTF-----------------------LDLSKCQLEQIS 489

Query: 374 PPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV 433
                 L R+Q LN+S+NNL     S ++ L  + +LD S+N+++    +      +LA 
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549

Query: 434 FNVAHNNLS 442
           FN+ +N+++
Sbjct: 550 FNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (364), Expect = 4e-37
 Identities = 93/462 (20%), Positives = 159/462 (34%), Gaps = 41/462 (8%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
              ++  H L  + L+  N    F        T LE+   +   L  L   PI    +L 
Sbjct: 73  DKAWHGLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNM----NFLISLDLSNN 123
            L+V++N +           L +L + ++S N   +        +       +SLD+S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFRE------ 176
            +     +  A   + L  L L  N    ++      NL  L   +L    F++      
Sbjct: 192 PIDFIQDQ--AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 177 ----ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
               I+E L   +  E   L+  N           L+ +  + L     +    +     
Sbjct: 250 FEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH-- 306

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
              Q L+I    +        +  L    L L  N   G +  +   L  L  +DLS N 
Sbjct: 307 FKWQSLSIIRCQLKQF-PTLDLPFLKS--LTLTMNK--GSISFKKVALPSLSYLDLSRNA 361

Query: 293 LSGHIPPC----LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE-TFKFTT-KN 346
           LS     C    L   +L    +       S    +     F   +++Q   F+ +T K 
Sbjct: 362 LSF-SGCCSYSDLGTNSLRHLDL-------SFNGAIIMSANFMGLEELQHLDFQHSTLKR 413

Query: 347 IAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-TFSNLK 405
           +        +  L  LD+SY             LT + TL ++ N+   +  S  F+N  
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 406 HIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
           ++  LDLS  +L+         L+ L + N++HNNL      
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (361), Expect = 1e-36
 Identities = 73/397 (18%), Positives = 129/397 (32%), Gaps = 48/397 (12%)

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
                +     +  L   +P    D   S K  ++S N        SF N + L  LDLS
Sbjct: 9   EVVPNITYQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL-ES 180
             ++     +                             L +L  L L GN  +     S
Sbjct: 65  RCEIETIEDKAWH-------------------------GLHHLSNLILTGNPIQSFSPGS 99

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQILN 239
            S  +SLE L   +  L+      +G L  L+ + +  N      +P  F  L +L  ++
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 240 ISDNNISGIYHHA----SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG 295
           +S N I  I  +              L ++ N  +  +  Q  Q  KL  + L  N  S 
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSS 218

Query: 296 HIPP--CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353
           +I      +   LH   +     +      + E         +       T    ++   
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 354 RVISYLS---ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                L+    + L+   +  +    +    + Q+L++    L         +L  +KSL
Sbjct: 279 VKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSL 333

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
            L+ NK    I  + V L +L+  +++ N LS     
Sbjct: 334 TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (360), Expect = 1e-36
 Identities = 77/477 (16%), Positives = 144/477 (30%), Gaps = 53/477 (11%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHC 62
                     L+ + ++H  ++         N T L    L  N +  +           
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIP-TSFGNMNFLISLDLS 121
            +  + LD+S N +   I  +    +  L    +  N   S+I  T   N+  L    L 
Sbjct: 180 PQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 122 NNQLTGE-----IPEHLAMGCVDL--EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
             +   E         +  G  D+  +   L+  +       +   L N+  + L G   
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
           + + E + K    + L +    L         +L  L+ + L  N            L S
Sbjct: 298 KYL-EDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFK--KVALPS 351

Query: 235 LQILNISDNNISGIYHHA-SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
           L  L++S N +S     + S L  +  + +    N    +      L +LQ +D  ++ L
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

Query: 294 SGHIPPCL--DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
                         L    I       S T+          +      F   T       
Sbjct: 412 KRVTEFSAFLSLEKLLYLDI-------SYTNT---------KIDFDGIFLGLTS------ 449

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                  L+ L ++ N         +  N T +  L+LS   L       F  L  ++ L
Sbjct: 450 -------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
           ++S+N L         +L +L+  + + N +            +    +   N   C
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
                 KL  ++P  I   +  + ++LS+N L      +FSN   ++ LDLS  +++   
Sbjct: 16  YQCMDQKL-SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 422 PLQLVELNTLAVFNVAHNNLSGKIPEW 448
                 L+ L+   +  N +    P  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGS 99

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 2e-36
 Identities = 82/421 (19%), Positives = 149/421 (35%), Gaps = 81/421 (19%)

Query: 22  LSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIP 81
                +N  FP     +  +     L   S+  +  +     +S+  L V+   +     
Sbjct: 7   TLPAPINQIFP---DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASIQG 61

Query: 82  VKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE 141
           ++   +L +L+Y N++ N      P    N+  L +L +  N++T      L     +L 
Sbjct: 62  IE---YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ-NLTNLR 113

Query: 142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI 201
            L L+ +++         NLT +  L L  NH    L  LS  + L  L ++++ +    
Sbjct: 114 ELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 202 PRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQ 261
           P  + NL+ L  + L  N  E   P     L SL       N I+ I   A++  L+   
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNS-- 225

Query: 262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSET 321
           L + +N      P  L  L++L  +++  N +S  I    D T L               
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKM------------- 269

Query: 322 SFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLT 381
                                                   L++  N+ I  I   + NL+
Sbjct: 270 ----------------------------------------LNVGSNQ-ISDISV-LNNLS 287

Query: 382 RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
           ++ +L L+ N L          L ++ +L LS N +    PL    L+ +   + A+  +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

Query: 442 S 442
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 2e-31
 Identities = 68/382 (17%), Positives = 139/382 (36%), Gaps = 62/382 (16%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           L      +    P      L       +   +    +      +  +  L ++  ++   
Sbjct: 5   LATLPAPINQIFPDA---DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS- 58

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLE 188
             + +     +LEYL L+ N +         NL  L  L +  N   +I  +L   ++L 
Sbjct: 59  -IQGIE-YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDI-SALQNLTNLR 113

Query: 189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI 248
            LYL+++N+S   P  L NL+ +  + L  NH    +      +  L  L ++++ +  +
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV 170

Query: 249 YHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP----PCLDNT 304
              A++  L    L L +N  E   P  L  L  L       N ++   P      L++ 
Sbjct: 171 TPIANLTDLY--SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSL 226

Query: 305 TLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDL 364
            +  + I   SP ++ +                                     L+ L++
Sbjct: 227 KIGNNKITDLSPLANLSQ------------------------------------LTWLEI 250

Query: 365 SYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424
             N++       + +LT+++ LN+  N ++    S  +NL  + SL L+ N+L  +    
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 425 LVELNTLAVFNVAHNNLSGKIP 446
           +  L  L    ++ N+++   P
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 3e-28
 Identities = 63/296 (21%), Positives = 115/296 (38%), Gaps = 22/296 (7%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           LE++ L+   +    P   L N  KL + ++  N +  +    +    +L  L ++ +N+
Sbjct: 68  LEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNI 122

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
               P+     L  +   N+  N    S  +   NM  L  L ++ +++    P      
Sbjct: 123 SDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIA---N 175

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
             DL  L L+ N +E        +LT+L       N   +I   ++  + L  L + +N 
Sbjct: 176 LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNK 232

Query: 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS 256
           ++   P  L NLS L  + +  N            L  L++LN+  N IS I    ++  
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLNNLSQ 288

Query: 257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYID 312
           L+   L L +N    E    +  L  L  + LS N ++  I P    + +  +   
Sbjct: 289 LNS--LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.2 bits (248), Expect = 6e-23
 Identities = 55/329 (16%), Positives = 118/329 (35%), Gaps = 51/329 (15%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
             +L      +    P+       +    +L   S+   +      L ++ +L + G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV 56

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
             I + +   ++LE L L+ N ++   P  L NL  L ++ +  N            L +
Sbjct: 57  ASI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTN 111

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           L+ L ++++NIS I   A++  +    L L  N+        L  +  L  + ++ + + 
Sbjct: 112 LRELYLNEDNISDISPLANLTKMYS--LNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
             + P  + T L+   ++ +  E                  +                  
Sbjct: 169 D-VTPIANLTDLYSLSLNYNQIEDIS--------PLASLTSLHY---------------- 203

Query: 355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
                       N++    P  + N+TR+ +L +  N +T   P   +NL  +  L++  
Sbjct: 204 -------FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 415 NKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
           N++     ++  +L  L + NV  N +S 
Sbjct: 253 NQISDINAVK--DLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           + N T+L S  + NN +  L   P+     L  L++  N +     VK    L  LK  N
Sbjct: 217 VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDINAVK---DLTKLKMLN 271

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           +  N    S  +   N++ L SL L+NNQL  E  E +  G  +L  L LS N +     
Sbjct: 272 VGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITD--I 326

Query: 156 PRNFNLTNLRRLQLDGNHFRE 176
               +L+ +          ++
Sbjct: 327 RPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L  L+L+ N++    P  + NL ++  L +  N +T    S   NL +++ L L+ + + 
Sbjct: 68  LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNIS 123

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
              PL    L  +   N+  N+    +  
Sbjct: 124 DISPLA--NLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
            + L       I QI P   +L       L   ++T     T   L+ I  L ++  K+ 
Sbjct: 2   AATLATLPAP-INQIFP-DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIP 446
               ++   L  L   N+  N ++   P
Sbjct: 58  SIQGIE--YLTNLEYLNLNGNQITDISP 83

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (361), Expect = 3e-36
 Identities = 70/388 (18%), Positives = 130/388 (33%), Gaps = 45/388 (11%)

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
           C     +      NL   +P      L + +   +S N   +   +SF  +  L  L+L 
Sbjct: 2   CSFDGRIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREIL-- 178
           +      I +       +L  L L ++ +   L P  F  L +L  L+L      + +  
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLK 115

Query: 179 -ESLSKCSSLEGLYLSDNNLSG-KIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD--S 234
                   +L  L LS N +    +    G L+ L+ I    N        E   L   +
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           L   +++ N++           ++  + +                   L+++D+S N  +
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNM------------------VLEILDVSGNGWT 217

Query: 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
             I     N                  +     F F+  K   +           T+ G 
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAG----FGFHNIKDPDQN----------TFAGL 263

Query: 355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
             S +  LDLS+  +          L  ++ LNL+YN +       F  L +++ L+LSY
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 415 NKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           N L          L  +A  ++  N+++
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  140 bits (355), Expect = 1e-35
 Identities = 92/507 (18%), Positives = 159/507 (31%), Gaps = 48/507 (9%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLP--IHCHK 64
               F +  +L  + L   +          +    L    L    L    L        K
Sbjct: 65  DKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGN--MNFLISLDLSN 122
           +L  LD+S N ++          L SLK  + S N                 L    L+ 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 123 NQLTGEIPEHLAMGC-----VDLEYLLLSNN------------SLEGHLFPRNFNLTNLR 165
           N L   +             + LE L +S N            ++            ++ 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 166 RLQLDGNHFREILESL---SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
                 ++ ++  ++       SS+  L LS   +     R    L  L+ + L  N   
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
                 F  LD+LQ+LN+S N +  +Y            + L  N+           L K
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 283 LQLIDLSNNILSG-HIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341
           LQ +DL +N L+  H  P + +  L  + + T    +   + +       +   I     
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 342 FTTK---------NIAYTYRGRVISY---LSELDLSYNKLIGQIPPQI-----GNLTRIQ 384
                          +     +  S    L +L L  N L      ++       L+ +Q
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 385 TLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGK 444
            L L++N L    P  FS+L  ++ L L+ N+L       L     L + +++ N L   
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-A 540

Query: 445 IPEWTAQFATFNESSYEGNPFLCGLPL 471
                  F + +      N F+C   L
Sbjct: 541 PNPDV--FVSLSVLDITHNKFICECEL 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (335), Expect = 5e-33
 Identities = 78/392 (19%), Positives = 132/392 (33%), Gaps = 55/392 (14%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSI-PTSFGNMNFLISLDLSNN 123
           +   L +S N ++  +      FL  L+   +       +I   +F N+  L  LDL ++
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFREILE-- 179
           ++   +      G   L  L L    L   +    +  NL  L RL L  N  R +    
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSM--LQHIILPENHFEGPIPMEFCQLD---- 233
           S  K +SL+ +  S N +       L  L    L    L  N     + +++ +      
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 234 --SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
              L+IL++S N  +         ++SK Q      +      I         + D   N
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQA----FSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 292 ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
             +G     + +  L   ++ + +                        F+          
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSR---------------------VFETLKD------ 291

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                  L  L+L+YNK I +I  +    L  +Q LNLSYN L     S F  L  +  +
Sbjct: 292 -------LKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           DL  N +          L  L   ++  N L+
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 29/193 (15%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
                      LE + L    L   +   L  +                           
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDV--------------------FEGLSH 481

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
           L +L +++N L   +P  +   L +L+  +++ N               L  LD+S NQL
Sbjct: 482 LQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQL 538

Query: 126 TGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS 185
               P+        L  L +++N          F +  L    +        +  +    
Sbjct: 539 LAPNPDVFVS----LSVLDITHNKFICECELSTF-INWLNHTNVTIAGPPADIYCVY-PD 592

Query: 186 SLEGLYLSDNNLS 198
           S  G+ L   +  
Sbjct: 593 SFSGVSLFSLSTE 605

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (336), Expect = 1e-33
 Identities = 70/422 (16%), Positives = 141/422 (33%), Gaps = 25/422 (5%)

Query: 43  ESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFD 102
           +++ + +        +P     ++  LD+S N +  +I         +L+   +  +  +
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NL 161
           +    +F ++  L  LDLS+N L+  +          L+YL L  N  +       F NL
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 162 TNLRRLQLDGNHFREIL--ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
           TNL+ L++        +     +  +SL  L +   +L     + L ++  + H+ L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                + +    L S++ L + D N++        +      +                +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 280 LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESS--ETSFVDEGFAFYKEKKIQ 337
           L KL    L  + +             + S  D  S        +        +      
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 338 ETFKFTTKNIAY------------TYRGRVISYLSELDLSYNKLIGQIPPQ---IGNLTR 382
            T     + +                  + +  L  LDLS N ++ +        G    
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 383 IQTLNLSYNNLT--GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNN 440
           +QTL LS N+L            LK++ SLD+S N     +P        +   N++   
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG 421

Query: 441 LS 442
           + 
Sbjct: 422 IR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (299), Expect = 9e-29
 Identities = 84/470 (17%), Positives = 162/470 (34%), Gaps = 62/470 (13%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
            ++ + LS   +     +  L     L+   L ++ +  +     +   SL  LD+S+N+
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLA 134
           L   +       L SLKY N+  N + +  + + F N+  L +L + N +   EI     
Sbjct: 86  LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 135 MGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYL 192
            G   L  L +   SL  +   ++  ++ ++  L L  +    +LE      SS+  L L
Sbjct: 145 AGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL----------------- 235
            D NL+      L    +   +              F +L  L                 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 236 -QILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
             + + + +    +     + +++  +L +       ++      L K++ I + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 295 GHIPPC------------LDNTTLHESYIDTSSPESSETS---FVDEGFAFYKEKKIQET 339
             +P              L    + E Y+  S+ + +  S    V         +K  E 
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS 399
                              L+ LD+S N     +P       +++ LNLS   +      
Sbjct: 383 LLTLKN-------------LTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 400 TFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
               L+    LD+S N LD    L L  L  L    ++ N L   +P+ +
Sbjct: 429 IPQTLEV---LDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDAS 470

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (288), Expect = 2e-27
 Identities = 63/424 (14%), Positives = 129/424 (30%), Gaps = 42/424 (9%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
            + F +  +L+ +R+ ++    E         T L    +   SL       +   + + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
            L +  +     +     D L S++Y  +          +          +     + + 
Sbjct: 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS- 233

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSL 187
            + +      + L   +L  + +E      +  L  L       +     L  + +  ++
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFD----DCTLNGLGDFNPSESDVVSELGKV-ETVTI 288

Query: 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG 247
             L++    L   +      L  ++ I +  +            L SL+ L++S+N +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 248 IYHHASILSLSKDQL---VLAHNNFE--GEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD 302
            Y   S    +   L   VL+ N+     +    L  L  L  +D+S N        C  
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408

Query: 303 NTTLHE--------SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
              +            + T  P++ E   V           +     F  +         
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN-------NLDSFSLFLPR--------- 452

Query: 355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
               L EL +S NKL  +  P       +  + +S N L       F  L  ++ + L  
Sbjct: 453 ----LQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 415 NKLD 418
           N  D
Sbjct: 507 NPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHC 62
             +       +E V +  L++         + +     K++   + N+ +  +       
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDS--SIPTSFGNMNFLISL 118
            KSL  LD+S N +              PSL+   +S N   S          +  L SL
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL 178
           D+S N     +P+        + +L LS+  +   +         L  L +  N+     
Sbjct: 393 DISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS 447

Query: 179 ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238
             L     L+ LY+S N L   +P       +L  + +  N  +      F +L SLQ +
Sbjct: 448 LFLP---RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 239 NISDNNI 245
            +  N  
Sbjct: 503 WLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 51/302 (16%), Positives = 94/302 (31%), Gaps = 28/302 (9%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
              F      + ++ L   NL   F    L  +        L      L     +    L
Sbjct: 188 LEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
           +   +  + ++        D        + + +  D            +  L +    L 
Sbjct: 247 LRYILELSEVEF-------DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFREIL----ES 180
                 +      ++ + + N+ +   L P +F  +L +L  L L  N   E        
Sbjct: 300 -YDLSTVYSLLEKVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 181 LSKCSSLEGLYLSDNNLS--GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238
                SL+ L LS N+L    K    L  L  L  + +  N F  P+P      + ++ L
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
           N+S   I  +            +++   NN      + L +L +L    +S N L   +P
Sbjct: 416 NLSSTGIRVVKTCI----PQTLEVLDVSNNNLDSFSLFLPRLQEL---YISRNKLK-TLP 467

Query: 299 PC 300
             
Sbjct: 468 DA 469

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 45/242 (18%)

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
           C +         + +  IP  L   + ++ + L  N        +     +LQ+L +  +
Sbjct: 4   CDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 244 NISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN-ILSGHIPPCL 301
            I+ I    +  SL   + L L+ N+           L+ L+ ++L  N   +  +    
Sbjct: 61  RINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 302 DNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRV 355
            N T      +      +                                          
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAG--------------------------------- 146

Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
           ++ L+EL++    L       + ++  I  L L  +     +      L  ++ L+L   
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 416 KL 417
            L
Sbjct: 207 NL 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  130 bits (329), Expect = 1e-33
 Identities = 74/439 (16%), Positives = 146/439 (33%), Gaps = 77/439 (17%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           L+ +       +   +    F        +  ++   N+ ++  +P  + D    ++  N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           ++    +     +F   + +  L +  N +   +P H+      L  L+L  N L   L 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 156 PRNF-NLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
              F N   L  L +  N+   I  ++    +SL+ L LS N L+  +   L  +  L H
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273
             +  N              +++ L+ S N+I+ +      + L+   L L HNN   + 
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVV-RGPVNVELTI--LKLQHNNLT-DT 241

Query: 274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333
              L     L  +DLS N L   I                                    
Sbjct: 242 A-WLLNYPGLVEVDLSYNELE-KIMY---------------------------------- 265

Query: 334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNL 393
                 F    +             L  L +S N+ +  +      +  ++ L+LS+N+L
Sbjct: 266 ----HPFVKMQR-------------LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL 307

Query: 394 TGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA 453
              +         +++L L +N +   + L+L   +TL    ++HN+         A F 
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDC--NSLRALFR 361

Query: 454 TFNESSYEGNPFLCGLPLP 472
                + +     C +   
Sbjct: 362 NVARPAVDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (270), Expect = 1e-25
 Identities = 59/310 (19%), Positives = 111/310 (35%), Gaps = 32/310 (10%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHC 62
           + + ++   D+       +        + P  LL++  ++E   L +  +  +       
Sbjct: 32  TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 91

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
             ++  L +  N ++ ++P  +   +P L    +  N   S     F N   L +L +SN
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-----------------NLTNLR 165
           N L   I +        L+ L LS+N L  H+                          + 
Sbjct: 151 NNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVE 208

Query: 166 RLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI 225
            L    N    +   +     L  L L  NNL+     WL N   L  + L  N  E  +
Sbjct: 209 ELDASHNSINVVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIM 264

Query: 226 PMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQ 284
              F ++  L+ L IS+N +  +  +     +     L L+HN+    V     Q ++L+
Sbjct: 265 YHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321

Query: 285 LIDLSNNILS 294
            + L +N + 
Sbjct: 322 NLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 3e-24
 Identities = 54/304 (17%), Positives = 110/304 (36%), Gaps = 34/304 (11%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
                     +E + L+ L +  E   +       ++  ++  N++  L          L
Sbjct: 61  PAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
            +L +  N+L   +P  I    P L   ++S N  +     +F     L +L LS+N+LT
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT------------------NLRRLQ 168
             +   L      L +  +S N L          +                    L  L+
Sbjct: 179 -HVDLSL---IPSLFHANVSYNLLS--TLAIPIAVEELDASHNSINVVRGPVNVELTILK 232

Query: 169 LDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME 228
           L  N+  +    L     L  + LS N L   +      +  L+ + +  N     + + 
Sbjct: 233 LQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 290

Query: 229 FCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLID 287
              + +L++L++S N++  +    +     + + L L HN+      ++L   + L+ + 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLT 345

Query: 288 LSNN 291
           LS+N
Sbjct: 346 LSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 24/241 (9%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
             + F     L+ ++LS   L       L+ +   L    +  N L  L +       ++
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLSTLAIPI-----AV 207

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
             LD S+N++   +    G     L    +  N   +       N   L+ +DLS N+L 
Sbjct: 208 EELDASHNSIN-VVR---GPVNVELTILKLQHNNL-TDTAW-LLNYPGLVEVDLSYNELE 261

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESLSKCS 185
            +I  H  +    LE L +SNN L           +  L+ L L  NH   +  +  +  
Sbjct: 262 -KIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
            LE LYL  N++   +   L     L+++ L  N ++           ++    + D + 
Sbjct: 319 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ 373

Query: 246 S 246
            
Sbjct: 374 H 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 201 IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKD 260
           I   L    +   + +     +     E   L++ +I+   ++ +  +           +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 261 QLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSE 320
            L L     E          + +Q + +  N +  ++PP                     
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP--------------------- 110

Query: 321 TSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-GN 379
                              F+                 L+ L L  N  +  +P  I  N
Sbjct: 111 -----------------HVFQNVPL-------------LTVLVLERND-LSSLPRGIFHN 139

Query: 380 LTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN 439
             ++ TL++S NNL      TF     +++L LS N+L   + L L  + +L   NV++N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYN 196

Query: 440 NLS 442
            LS
Sbjct: 197 LLS 199

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (328), Expect = 2e-32
 Identities = 75/418 (17%), Positives = 144/418 (34%), Gaps = 44/418 (10%)

Query: 59  PIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISL 118
           P       +       N    IP  +     S K  ++S N        SF +   L  L
Sbjct: 2   PCVEVVPNITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI 177
           DLS  ++   I +        L  L+L+ N ++  L    F  L++L++L     +   +
Sbjct: 58  DLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 115

Query: 178 LE-SLSKCSSLEGLYLSDNNL-SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL 235
               +    +L+ L ++ N + S K+P +  NL+ L+H+ L  N  +     +   L  +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 236 QI----LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ-LNKLQLIDLSN 290
            +    L++S N ++ I    +   +   +L L +N     V     Q L  L++  L  
Sbjct: 176 PLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 291 NILSGHIP------------PCLDNTTLHESYIDTSSPESSET-----SFVDEGFAFYKE 333
                                 L       +Y+D    +  +      +           
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 334 KKIQETFKFT-------TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL 386
           +++++                   +    +  L  L  + NK          +L  ++ L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFL 352

Query: 387 NLSYNNLT--GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           +LS N L+  G    +      +K LDLS+N +   +    + L  L   +  H+NL 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (314), Expect = 1e-30
 Identities = 85/442 (19%), Positives = 154/442 (34%), Gaps = 38/442 (8%)

Query: 20  VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79
            +   LN   + P+ L  +   L+   L  N L  L          L +LD+S   +Q  
Sbjct: 12  YQCMELNFY-KIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-T 66

Query: 80  IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139
           I       L  L    ++ N   S    +F  ++ L  L      L       +      
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 140 LEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI----LESLSKCSSLEG-LYLS 193
           L+ L +++N ++    P  F NLTNL  L L  N  + I    L  L +   L   L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP-MEFCQLDSLQILNI------SDNNIS 246
            N ++   P     +  L  + L  N     +       L  L++  +      ++ N+ 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 247 GIYHHA--SILSLSKDQLVLAHNNFEGEVPIQL-CQLNKLQLIDLSNNILSGHIPPCLDN 303
                A   + +L+ ++  LA+ ++  +  I L   L  +    L +  +   +     N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN 303

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
                  +         T  +             +   FT+      +    +  L  LD
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKS----------LKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 364 LSYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
           LS N L   G         T ++ L+LS+N +  ++ S F  L+ ++ LD  ++ L    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 422 PL-QLVELNTLAVFNVAHNNLS 442
                + L  L   +++H +  
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (294), Expect = 5e-28
 Identities = 68/460 (14%), Positives = 145/460 (31%), Gaps = 38/460 (8%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
             + + LS   L     ++   +  +L+   L    +  +          L  L ++ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
           +Q  + +     L SL+          S      G++  L  L++++N +          
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 136 GCVDLEYLLLSNNSLEGHLFPRNF-NLTNLR----RLQLDGNHFREILESLSKCSSLEGL 190
              +LE+L LS+N ++  ++  +   L  +      L L  N    I     K   L  L
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 191 YLSDNNLSGKIPR-WLGNLSMLQHIILPENHFEGPIPME---FCQLDSLQILNISDNNIS 246
            L +N  S  + +  +  L+ L+   L    F     +E      L+ L  L I +  ++
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 247 GIYHHASILSLSKDQLV------LAHNNFEGEVPIQ-LCQLNKLQLIDLSNNILSGHIPP 299
            + ++   +    + L       L     E             L+L++            
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 300 CLDNTTLHESYIDTSSPESSETS-------------FVDEGFAFYKEKKIQETFKFTTKN 346
            L   T   +    +  E    S                   + +    ++     +   
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY-LDLSFNG 384

Query: 347 IAYTYRG-RVISYLSELDLSYNKLIGQIPPQI--GNLTRIQTLNLSYNNLTGSIPSTFSN 403
           +         +  L  LD  ++ L  Q+       +L  +  L++S+ +   +    F+ 
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 404 LKHIKSLDLSYNKLDGKIPLQ-LVELNTLAVFNVAHNNLS 442
           L  ++ L ++ N            EL  L   +++   L 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (285), Expect = 6e-27
 Identities = 82/484 (16%), Positives = 155/484 (32%), Gaps = 70/484 (14%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
              +     L  + L+  N             + L+    +  +L  L   PI   K+L 
Sbjct: 69  DGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI----------- 116
            L+V++N +Q     +    L +L++ ++S N   S   T    ++ +            
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 117 ----------------SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH----LFP 156
                            L L NN  +  + +    G   LE   L             F 
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 157 RNF--NLTNLRRLQLDGNH----FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSM 210
           ++    L NL   +    +      +I++  +  +++    L    +  ++  +  N   
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG- 305

Query: 211 LQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHN--N 268
            QH+ L    F         +L SL+ L  + N     +    + SL    L L+ N  +
Sbjct: 306 WQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF--LDLSRNGLS 360

Query: 269 FEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT------LHESYIDTSSPESSETS 322
           F+G           L+ +DLS N +   +                 S +   S  S    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS---- 415

Query: 323 FVDEGFAFYKEKKIQE---TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-G 378
                  F   + +     +   T       + G  +S L  L ++ N       P I  
Sbjct: 416 ------VFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFT 467

Query: 379 NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAH 438
            L  +  L+LS   L    P+ F++L  ++ L+++ N+L          L +L    +  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 439 NNLS 442
           N   
Sbjct: 528 NPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (266), Expect = 2e-24
 Identities = 67/344 (19%), Positives = 118/344 (34%), Gaps = 22/344 (6%)

Query: 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHF 174
           I+          +IP++L       + L LS N L  HL   +F +   L+ L L     
Sbjct: 10  ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI 64

Query: 175 REI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233
           + I   +    S L  L L+ N +          LS LQ ++  E +           L 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 234 SLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQL----IDL 288
           +L+ LN++ N I          +L+  + L L+ N  +      L  L+++ L    +DL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 289 SNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
           S N ++   P       LH+  +  +    +      +G A  +  ++         N+ 
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 349 YTYRGRVIS----YLSELDLSYNKLIG-QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
              +  +       + E  L+Y       I      LT + + +L    +   +   FS 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSY 302

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
               + L+L   K      L+L  L  L       N       E
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSE 343

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (316), Expect = 3e-32
 Identities = 52/286 (18%), Positives = 104/286 (36%), Gaps = 20/286 (6%)

Query: 21  RLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLF-LLPIHCHKSLMLLDVSNNNLQGH 79
           R  + + N     W   N+   +       +L     LL        + L++ +  L   
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 80  IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139
            P +    L  L++  I        +P +      L +L L+ N L   +P  +A     
Sbjct: 96  FPDQAFR-LSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNR 151

Query: 140 LEYLLLS-NNSLE--------GHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGL 190
           L  L +     L               +  L NL+ L+L+    R +  S++   +L+ L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD-NNISGIY 249
            + ++ LS  +   + +L  L+ + L         P  F     L+ L + D +N+  + 
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL- 269

Query: 250 HHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
               I  L++ ++L L        +P  + QL    +I +  ++ +
Sbjct: 270 -PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (271), Expect = 3e-26
 Identities = 53/351 (15%), Positives = 101/351 (28%), Gaps = 60/351 (17%)

Query: 60  IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLD 119
            H       L    +         +          + +             N N      
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 120 LSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE 179
            +   L                 L L +  L      + F L++L+ + +D     E+ +
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI---------ILPENHFEGPIPMEFC 230
           ++ + + LE L L+ N L   +P  + +L+ L+ +          LPE         E  
Sbjct: 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
            L +LQ L +    I  +   ASI +L     L + ++     +   +  L KL+ +DL 
Sbjct: 181 GLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 290 NNILSGHIPPCLDN-TTLHESYID-----TSSPESSETSFVDEGFAFYKEKKIQETFKFT 343
                 + PP       L    +       + P                           
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD------------------------- 272

Query: 344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT 394
              I        ++ L +LDL     + ++P  I  L     + +  +   
Sbjct: 273 ---IHR------LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 4e-26
 Identities = 46/366 (12%), Positives = 102/366 (27%), Gaps = 64/366 (17%)

Query: 88  LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN 147
               +      +                 + D +                 + +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 148 NSLEGHL-FPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLG 206
            +L+       +        L+L      +  +   + S L+ + +    L  ++P  + 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 207 NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAH 266
             + L+ + L  N     +P     L+ L+ L+I                L++    L  
Sbjct: 125 QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACP-----------ELTE----LPE 168

Query: 267 NNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYID----TSSPESSET 321
                +   +   L  LQ + L    +   +P  + N   L    I     ++   +   
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--- 224

Query: 322 SFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLT 381
                         I                   +  L ELDL     +   PP  G   
Sbjct: 225 --------------IHH-----------------LPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 382 RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
            ++ L L   +   ++P     L  ++ LDL       ++P  + +L    +  V   +L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHL 312

Query: 442 SGKIPE 447
             ++ +
Sbjct: 313 QAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 1e-24
 Identities = 46/347 (13%), Positives = 95/347 (27%), Gaps = 79/347 (22%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162
            S      + +   +L    +       + L+      +    ++ +   H   R  N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSN 56

Query: 163 NLRRLQLDGNHFREILESLSKCSS--LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
           N +     G   +   + L   +      L L    L  + P     LS LQH+ +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL 280
               +P    Q   L+ L ++ N +                           +P  +  L
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLR-------------------------ALPASIASL 149

Query: 281 NKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
           N+L+ + +        +P  L +T     +    +                         
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVN------------------------- 184

Query: 341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPST 400
                             L  L L +  +   +P  I NL  +++L +  + L+ ++   
Sbjct: 185 ------------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 401 FSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
             +L  ++ LDL         P        L    +   +    +P 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 9e-23
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 27/248 (10%)

Query: 16  DLEFVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLP--IHCHKSLMLL 69
           D        L L      +FP+      + L+   +    L  L   P  +     L  L
Sbjct: 77  DATQPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMEL---PDTMQQFAGLETL 132

Query: 70  DVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNF---------LISLDL 120
            ++ N L+  +P  I   L  L+  +I      + +P    + +          L SL L
Sbjct: 133 TLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDG-NHFREIL 178
               +   +P  +A    +L+ L + N+ L          +L  L  L L G    R   
Sbjct: 191 EWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 179 ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238
                 + L+ L L D +    +P  +  L+ L+ + L        +P    QL +  I+
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 239 NISDNNIS 246
            +  +  +
Sbjct: 307 LVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L  L L     +  +P  I  LT+++ L+L        +PS  + L     + +  +   
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 419 GKIPLQLVEL 428
                + V  
Sbjct: 315 QLDQHRPVAR 324

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (317), Expect = 2e-31
 Identities = 72/387 (18%), Positives = 131/387 (33%), Gaps = 66/387 (17%)

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120
            C      +          +P          +  ++  N   +     F +   L  L+L
Sbjct: 8   ECSAQDRAVLCHRKRFV-AVP---EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE 179
           + N ++  +         +L  L L +N L+  +    F  L+NL +L +  N    +L+
Sbjct: 64  NENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD 121

Query: 180 -SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238
                  +L+ L + DN+L     R    L+ L+ + L + +           L  L +L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181

Query: 239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS-NNILSGHI 297
            +   NI+ I  ++                F+         L +L+++++S    L    
Sbjct: 182 RLRHLNINAIRDYS----------------FKR--------LYRLKVLEISHWPYLDTMT 217

Query: 298 PPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS 357
           P CL    L    I          + V    A                        R + 
Sbjct: 218 PNCLYGLNLTSLSIT-----HCNLTAVPYL-AV-----------------------RHLV 248

Query: 358 YLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
           YL  L+LSYN  I  I   +   L R+Q + L    L    P  F  L +++ L++S N+
Sbjct: 249 YLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 417 LDGKIPLQLVE-LNTLAVFNVAHNNLS 442
           L   +   +   +  L    +  N L+
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 1e-30
 Identities = 75/346 (21%), Positives = 131/346 (37%), Gaps = 41/346 (11%)

Query: 54  GLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN 113
               +P        LLD+  N ++  +        P L+   ++ N   +  P +F N+ 
Sbjct: 22  RFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGN 172
            L +L L +N+L   IP  +  G  +L  L +S N +   L    F +L NL+ L++  N
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN 138

Query: 173 HFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQ 231
               I   + S  +SLE L L   NL+      L +L  L  + L   +        F +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 232 LDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ-LNKLQLIDLSN 290
           L  L++L IS            +  L+   L + H N    VP    + L  L+ ++LS 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 291 NILSGHIPPCL--DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348
           N +S  I   +  +   L E  +        + + V+              F+       
Sbjct: 258 NPIS-TIEGSMLHELLRLQEIQLV-----GGQLAVVEPY-----------AFRGLNY--- 297

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNL 393
                     L  L++S N+ +  +   +  ++  ++TL L  N L
Sbjct: 298 ----------LRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 7e-25
 Identities = 61/292 (20%), Positives = 106/292 (36%), Gaps = 20/292 (6%)

Query: 19  FVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHCHKSLMLLD 70
                 L+L              +   LE   L  N +    PG F    +   +L  L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLG 86

Query: 71  VSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP 130
           + +N L+  IP+ +   L +L   +IS N     +   F ++  L SL++ +N L   I 
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS 144

Query: 131 EHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI-LESLSKCSSLE 188
                G   LE L L   +L   +      +L  L  L+L   +   I   S  +   L+
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI 248
            L +S       +         L  + +   +      +    L  L+ LN+S N IS I
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 249 YHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP 299
              + +  L +  ++ L         P     LN L+++++S N L+  +  
Sbjct: 264 -EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 1e-23
 Identities = 56/270 (20%), Positives = 100/270 (37%), Gaps = 16/270 (5%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHC 62
            P  F +  +L  + L   N     P  +    + L    +  N +      +F      
Sbjct: 72  EPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF----QD 126

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
             +L  L+V +N+L  +I  +    L SL+   +      S    +  +++ LI L L +
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI-LESL 181
             +   I ++       L+ L +S+      + P      NL  L +   +   +   ++
Sbjct: 186 LNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
                L  L LS N +S      L  L  LQ I L         P  F  L+ L++LN+S
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 242 DNNISGIYHHA--SILSLSKDQLVLAHNNF 269
            N ++ +      S+ +L    L+L  N  
Sbjct: 305 GNQLTTLEESVFHSVGNLET--LILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 45/237 (18%), Positives = 89/237 (37%), Gaps = 19/237 (8%)

Query: 21  RLSHLNLNG----EFPNWLLENNTKLESNFLLNNSL----PGLFL-LPIHCHKSLMLLDV 71
            L+ L+++        +++ ++   L+S  + +N L       F  L      SL  L +
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-----SLEQLTL 159

Query: 72  SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE 131
              NL   IP +    L  L    +     ++    SF  +  L  L++S+      +  
Sbjct: 160 EKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 132 HLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE-SLSKCSSLEG 189
           +   G  +L  L +++ +L   +      +L  LR L L  N    I    L +   L+ 
Sbjct: 219 NCLYGL-NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 190 LYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           + L    L+   P     L+ L+ + +  N         F  + +L+ L +  N ++
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 15/175 (8%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL-----PGLFLLPIH 61
                 H H L  +RL HLN+N    ++  +   +L+   + +        P        
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-- 224

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
              +L  L +++ NL   +P      L  L++ N+S N   +   +    +  L  + L 
Sbjct: 225 ---NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
             QL   +  +   G   L  L +S N L   L    F ++ NL  L LD N   
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L +L L     +  IP +   +L  +  L L + N+      +F  L  +K L++S+   
Sbjct: 154 LEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
              +    +    L   ++ H NL+  +P   
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 42/267 (15%), Positives = 80/267 (29%), Gaps = 73/267 (27%)

Query: 190 LYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIY 249
           +          +P  +   +  + + L +N  +     EF     L+ L +++N +S + 
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 250 HHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP-CLDNTT--- 305
             A                F          L  L+ + L +N L   IP       +   
Sbjct: 73  PGA----------------FNN--------LFNLRTLGLRSNRLK-LIPLGVFTGLSNLT 107

Query: 306 ---LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSEL 362
              + E+ I            + +             F+                 L  L
Sbjct: 108 KLDISENKI----------VILLDY-----------MFQDLYN-------------LKSL 133

Query: 363 DLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLDGK 420
           ++  N  +  I  +    L  ++ L L   NLT SIP+   S+L  +  L L +  ++  
Sbjct: 134 EVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 421 IPLQLVELNTLAVFNVAHNNLSGKIPE 447
                  L  L V  ++H      +  
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTP 218

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (315), Expect = 4e-31
 Identities = 55/400 (13%), Positives = 124/400 (31%), Gaps = 21/400 (5%)

Query: 35  LLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94
           + +N  + +   + ++SL            ++  LD+S N L       +      L+  
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELL 63

Query: 95  NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHL 154
           N+S N           +++ L +LDL+NN +  E+    +     +E L  +NN++    
Sbjct: 64  NLSSNVL-YETL-DLESLSTLRTLDLNNNYVQ-ELLVGPS-----IETLHAANNNISR-- 113

Query: 155 FPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSG-KIPRWLGNLSMLQ 212
              +      + + L  N    + +      S ++ L L  N +          +   L+
Sbjct: 114 VSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 213 HIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEG 271
           H+ L  N     +  +      L+ L++S N ++ +       S +    + L +N    
Sbjct: 173 HLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV- 227

Query: 272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFY 331
            +   L     L+  DL  N           +       +   + +       +E     
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 332 KEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
                    +      A           + L    ++   ++  +  N  R + ++    
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKE 346

Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL 431
                I       +   +L+     LD ++         L
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 5e-27
 Identities = 61/437 (13%), Positives = 121/437 (27%), Gaps = 42/437 (9%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
           S         LE + LS   L        LE+ + L +  L NN +  L + P     S+
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGP-----SI 101

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
             L  +NNN+   +           K   ++ N          G  + +  LDL  N++ 
Sbjct: 102 ETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSS 186
                 LA     LE+L L  N +             L+ L L  N    +       + 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           +  + L +N L   I + L     L+H  L  N F      +F    + ++  ++   + 
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

Query: 247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTL 306
            +                     E        +L  L+  + +     G     L+    
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSY 366
           +++          +   V +                                   L+   
Sbjct: 334 NQARQREIDALKEQYRTVIDQV------------------------TLRKQAKITLEQKK 369

Query: 367 NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK-IPLQL 425
             L  Q+         +             +         ++ L     + +   +  Q 
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428

Query: 426 VELNTLAVFNVAHNNLS 442
           V+ N +  +++  +  +
Sbjct: 429 VQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.4 bits (219), Expect = 7e-19
 Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 34/276 (12%)

Query: 174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233
             EI ++ ++    +   ++D++L   +     +   ++ + L  N        +     
Sbjct: 2   IHEIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN-- 291
            L++LN+S N +       S+ +L    L L +N  +     +L     ++ +  +NN  
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRT--LDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 292 -ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF----KFTTKN 346
             +S        N  L  + I                       ++Q       +  T N
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDL-----------DEGCRSRVQYLDLKLNEIDTVN 160

Query: 347 IAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH 406
            A          L  L+L YN +   +  Q+    +++TL+LS N L   +   F +   
Sbjct: 161 FAELAAS--SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 407 IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           +  + L  NKL   I   L     L  F++  N   
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 377 IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436
             N  R +   ++ ++L  ++ S   +  ++K LDLS N L       L     L + N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 437 AHNNLSG 443
           + N L  
Sbjct: 66  SSNVLYE 72

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (314), Expect = 4e-31
 Identities = 85/396 (21%), Positives = 144/396 (36%), Gaps = 58/396 (14%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           +E    L      NN L  +   P+     L+ + ++NN +    P+     L +L    
Sbjct: 64  VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLA---NLTNLTGLT 118

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           +  N      P    N+  L  L+LS+N ++         G   L+ L   N   +    
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQVTDLKPL 173

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
               NLT L RL +  N   +I   L+K ++LE L  ++N +S   P  LG L+ L  + 
Sbjct: 174 ---ANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
           L  N  +         L +L  L++++N IS +   + +  L++  L L  N      P+
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE--LKLGANQISNISPL 283

Query: 276 QLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
               L  L  ++L+ N L   I P  +   L  +Y+       S+ S V           
Sbjct: 284 A--GLTALTNLELNENQLED-ISPISNLKNL--TYLTLYFNNISDISPVSS--------- 329

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
                               ++ L  L    NK+       + NLT I  L+  +N ++ 
Sbjct: 330 --------------------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL 431
             P   +NL  I  L L+              ++  
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (303), Expect = 1e-29
 Identities = 88/400 (22%), Positives = 138/400 (34%), Gaps = 60/400 (15%)

Query: 44  SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS 103
           +    +  +  +F          M   +   N+   +       L  +            
Sbjct: 6   ATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGI-- 58

Query: 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTN 163
                   +N L  ++ SNNQLT   P  L      L  +L++NN +         NLTN
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLTN 113

Query: 164 LRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223
           L  L L  N   +I + L   ++L  L LS N +S      L  L+ LQ +    N    
Sbjct: 114 LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTD 169

Query: 224 PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKL 283
             P     L +L+ L+IS N +S I   A + +L    L+  +N      P+    L  L
Sbjct: 170 LKP--LANLTTLERLDISSNKVSDISVLAKLTNLE--SLIATNNQISDITPLG--ILTNL 223

Query: 284 QLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT 343
             + L+ N L   I      T L +  +  +   +                         
Sbjct: 224 DELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNL------------------APLSGL 264

Query: 344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
           TK             L+EL L  N++    P  +  LT +  L L+ N L    P   SN
Sbjct: 265 TK-------------LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
           LK++  L L +N +    P+    L  L      +N +S 
Sbjct: 308 LKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (281), Expect = 9e-27
 Identities = 65/340 (19%), Positives = 116/340 (34%), Gaps = 53/340 (15%)

Query: 107 TSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR 166
            +   +   +   L    +T  + +        +  L      ++         L NL +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP 226
           +    N   +I   L   + L  + +++N ++   P  L NL+ L  + L  N      P
Sbjct: 73  INFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 227 MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLI 286
                L +L  L +S N IS I   +++  L+  Q +   N      P+    L  L+ +
Sbjct: 130 --LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTDLKPLA--NLTTLERL 182

Query: 287 DLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKN 346
           D+S+N +S  I      T L                            +I +        
Sbjct: 183 DISSNKVSD-ISVLAKLTNLESLIAT--------------------NNQISDITPLGI-- 219

Query: 347 IAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH 406
                    ++ L EL L+ N+L       + +LT +  L+L+ N ++   P   S L  
Sbjct: 220 ---------LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTK 266

Query: 407 IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP 446
           +  L L  N++    PL    L  L    +  N L    P
Sbjct: 267 LTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (271), Expect = 2e-25
 Identities = 71/363 (19%), Positives = 128/363 (35%), Gaps = 53/363 (14%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           L   T L+     N       L P+    +L  LD+S+N +     +     L +L+   
Sbjct: 152 LSGLTSLQQLSFGNQVT---DLKPLANLTTLERLDISSNKVSDISVL---AKLTNLESLI 205

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
            + N      P   G +  L  L L+ NQL       LA    +L  L L+NN +     
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA-SLTNLTDLDLANNQISN--L 258

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
                LT L  L+L  N    I   L+  ++L  L L++N L    P  + NL  L ++ 
Sbjct: 259 APLSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
           L  N+     P     L  LQ L   +N +S +   A++ +++   L   HN      P+
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINW--LSAGHNQISDLTPL 371

Query: 276 QLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
               L ++  + L++   +        N ++  +  + +    +  +  D G        
Sbjct: 372 A--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS------- 422

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
                                   +E D+++N L           ++  T+       +G
Sbjct: 423 -----------------------YTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSG 458

Query: 396 SIP 398
           ++ 
Sbjct: 459 TVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 5e-22
 Identities = 65/336 (19%), Positives = 118/336 (35%), Gaps = 60/336 (17%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
           L S  ++ +    +I    A+   +    +L   ++         +L  +  LQ D    
Sbjct: 3   LGSATITQDTPINQIFTDTAL--AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI 58

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
           + I + +   ++L  +  S+N L+   P  L NL+ L  I++  N      P     L +
Sbjct: 59  KSI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           L  L + +N I+ I    ++ +L++  L L+ N         L  L  LQ +   N +  
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNR--LELSSNTISD--ISALSGLTSLQQLSFGNQVTD 169

Query: 295 GHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353
                 L     L  S    S                                       
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISV----------------------------------- 194

Query: 354 RVISYLSEL---DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
             ++ L+ L     + N++    P  +G LT +  L+L+ N L      T ++L ++  L
Sbjct: 195 --LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 248

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP 446
           DL+ N++    PL    L  L    +  N +S   P
Sbjct: 249 DLANNQISNLAPLS--GLTKLTELKLGANQISNISP 282

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (314), Expect = 1e-30
 Identities = 74/439 (16%), Positives = 146/439 (33%), Gaps = 77/439 (17%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           L+ +       +   +    F        +  ++   N+ ++  +P  + D    ++  N
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           ++    +     +F   + +  L +  N +   +P H+      L  L+L  N L   L 
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 156 PRNF-NLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
              F N   L  L +  N+   I  ++    +SL+ L LS N L+  +   L  +  L H
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 196

Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273
             +  N              +++ L+ S N+I+ +      + L+   L L HNN   + 
Sbjct: 197 ANVSYNLLS-----TLAIPIAVEELDASHNSINVV-RGPVNVELTI--LKLQHNNLT-DT 247

Query: 274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333
              L     L  +DLS N L   I                                    
Sbjct: 248 A-WLLNYPGLVEVDLSYNELE-KIMY---------------------------------- 271

Query: 334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNL 393
                 F    +             L  L +S N+ +  +      +  ++ L+LS+N+L
Sbjct: 272 ----HPFVKMQR-------------LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL 313

Query: 394 TGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA 453
              +         +++L L +N +   + L+L   +TL    ++HN+         A F 
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDC--NSLRALFR 367

Query: 454 TFNESSYEGNPFLCGLPLP 472
                + +     C +   
Sbjct: 368 NVARPAVDDADQHCKIDYQ 386

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (265), Expect = 2e-24
 Identities = 59/310 (19%), Positives = 111/310 (35%), Gaps = 32/310 (10%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHC 62
           + + ++   D+       +        + P  LL++  ++E   L +  +  +       
Sbjct: 38  TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
             ++  L +  N ++ ++P  +   +P L    +  N   S     F N   L +L +SN
Sbjct: 98  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-----------------NLTNLR 165
           N L   I +        L+ L LS+N L  H+                          + 
Sbjct: 157 NNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214

Query: 166 RLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI 225
            L    N    +   +     L  L L  NNL+     WL N   L  + L  N  E  +
Sbjct: 215 ELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 270

Query: 226 PMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQ 284
              F ++  L+ L IS+N +  +  +     +     L L+HN+    V     Q ++L+
Sbjct: 271 YHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327

Query: 285 LIDLSNNILS 294
            + L +N + 
Sbjct: 328 NLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 52/290 (17%), Positives = 102/290 (35%), Gaps = 23/290 (7%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
             + F     L+ ++LS   L       L+ +   L    +  N L  L +       ++
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLSTLAIPI-----AV 213

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
             LD S+N++   +    G     L    +  N   +       N   L+ +DLS N+L 
Sbjct: 214 EELDASHNSIN-VVR---GPVNVELTILKLQHNNL-TDTAW-LLNYPGLVEVDLSYNELE 267

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESLSKCS 185
            +I  H  +    LE L +SNN L           +  L+ L L  NH   +  +  +  
Sbjct: 268 -KIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQILNISDNN 244
            LE LYL  N++   +   L     L+++ L  N ++       F  +    + +   + 
Sbjct: 325 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381

Query: 245 ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
                    +     D+  L        +   + ++ + Q    + + ++
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTIN 431

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.6 bits (183), Expect = 3e-14
 Identities = 54/332 (16%), Positives = 97/332 (29%), Gaps = 96/332 (28%)

Query: 120 LSNNQLTGEIPEHLAMGCVDLEYLL--------LSNNSLEGHLFPRNFNLTNLRRLQLDG 171
           +   Q     P      C+D             +   + + +    +  L N + +    
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 172 NHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC 230
           +  R++    L     +E L L+D  +             +Q + +  N      P  F 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290
            +  L +L +  N++S +                                 KL  + +SN
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGI------------------------FHNTPKLTTLSMSN 156

Query: 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
           N L   I                                        +TF+ TT      
Sbjct: 157 NNLE-RIED--------------------------------------DTFQATTS----- 172

Query: 351 YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                   L  L LS N+ +  +      +  +   N+SYN L+     T +    ++ L
Sbjct: 173 --------LQNLQLSSNR-LTHVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEEL 216

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           D S+N ++       VEL  L    + HNNL+
Sbjct: 217 DASHNSINVVRGPVNVELTIL---KLQHNNLT 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 5e-28
 Identities = 74/374 (19%), Positives = 121/374 (32%), Gaps = 101/374 (27%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
               +L+V  + L   +P  +      +    I  N   +S+P        L +L++S N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNL-TSLPALPPE---LRTLEVSGN 91

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
           QLT  +P     G ++L         L           + L +L + GN    +      
Sbjct: 92  QLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPVLPP- 141

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
              L+ L +SDN L+  +P     L  L       N     +PM       LQ L++SDN
Sbjct: 142 --GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPML---PSGLQELSVSDN 191

Query: 244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
            ++                          +P    +L KL      NN L+  +P     
Sbjct: 192 QLA-------------------------SLPTLPSELYKL---WAYNNRLT-SLPALPSG 222

Query: 304 -TTLHESYID-TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361
              L  S    TS P                                        S L E
Sbjct: 223 LKELIVSGNRLTSLPVL-------------------------------------PSELKE 245

Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
           L +S N+L   +P     L     L++  N LT  +P +  +L    +++L  N L  + 
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 422 PLQLVELNTLAVFN 435
              L E+ +   ++
Sbjct: 301 LQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (285), Expect = 7e-27
 Identities = 71/330 (21%), Positives = 113/330 (34%), Gaps = 76/330 (23%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
              L++  + LT  +P+ L      +  L++ +N+L     P       LR L++ GN  
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQL 93

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
             +         L        +L    P     L  L    +  N     +P        
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LP---VLPPG 142

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           LQ L++SDN ++ +   A    L K  L   +N     +P+    L +L    +S+N L+
Sbjct: 143 LQELSVSDNQLASL--PALPSELCK--LWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA 194

Query: 295 GHIPPCLDN-TTLHESYID-TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYR 352
             +P        L       TS P                                    
Sbjct: 195 -SLPTLPSELYKLWAYNNRLTSLPAL---------------------------------- 219

Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
               S L EL +S N+L   +P     L     L +S N LT S+P   S L     L +
Sbjct: 220 ---PSGLKELIVSGNRL-TSLPVLPSELK---ELMVSGNRLT-SLPMLPSGLLS---LSV 268

Query: 413 SYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
             N+L  ++P  L+ L++    N+  N LS
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.7 bits (243), Expect = 1e-21
 Identities = 63/292 (21%), Positives = 100/292 (34%), Gaps = 56/292 (19%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
              + +    L    P+ L  + T L        SLP L          L  L+VS N L
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALP-------PELRTLEVSGNQL 93

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
              +PV     L  L  F+  +      +P        L  L +  NQLT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLT-SLPVLPP-- 141

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
              L+ L +S+N L     P     + L +L    N    +    S    L+ L +SDN 
Sbjct: 142 --GLQELSVSDNQLAS--LPAL--PSELCKLWAYNNQLTSLPMLPS---GLQELSVSDNQ 192

Query: 197 LSGKIPRWLGNLSML-----QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
           L+  +P     L  L     +   LP                 L+ L +S N ++ +   
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPA------------LPSGLKELIVSGNRLTSL--P 237

Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
                L +  L+++ N     +P+    L  L    +  N L+  +P  L +
Sbjct: 238 VLPSELKE--LMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIH 282

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 52/227 (22%), Positives = 81/227 (35%), Gaps = 33/227 (14%)

Query: 20  VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79
           + LS  +        L    + L   ++  N L  L +LP      L  L VS+N L   
Sbjct: 104 LELSIFSNPL---THLPALPSGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLA-S 155

Query: 80  IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139
           +P         L       N   +S+P        L  L +S+NQL   +P   +    +
Sbjct: 156 LPALPS----ELCKLWAYNNQL-TSLPMLPSG---LQELSVSDNQLA-SLPTLPS----E 202

Query: 140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSG 199
           L  L   NN L     P     + L+ L + GN    +    S    L+ L +S N L+ 
Sbjct: 203 LYKLWAYNNRLTS--LPAL--PSGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLT- 254

Query: 200 KIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
            +P     L     + +  N     +P     L S   +N+  N +S
Sbjct: 255 SLPMLPSGL---LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 3e-19
 Identities = 50/274 (18%), Positives = 90/274 (32%), Gaps = 44/274 (16%)

Query: 30  EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP 89
           +    L   N  L    +  + L  L   P      +  L + +NNL   +P        
Sbjct: 33  KMRACLNNGNAVLN---VGESGLTTL---PDCLPAHITTLVIPDNNLT-SLPALPP---- 81

Query: 90  SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNS 149
            L+   +S N   +S+P     +  L         L              L  L +  N 
Sbjct: 82  ELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIFGNQ 132

Query: 150 LEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLS 209
           L     P       L+ L +  N    +       S L  L+  +N L+  +P       
Sbjct: 133 LTS--LPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPMLPSG-- 182

Query: 210 MLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNF 269
            LQ + + +N     +P    +   L  L   +N ++ +   A    L +  L+++ N  
Sbjct: 183 -LQELSVSDNQLAS-LPTLPSE---LYKLWAYNNRLTSL--PALPSGLKE--LIVSGNRL 233

Query: 270 EGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
              +P+   +L +L    +S N L+  +P     
Sbjct: 234 T-SLPVLPSELKEL---MVSGNRLT-SLPMLPSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 3e-16
 Identities = 50/222 (22%), Positives = 81/222 (36%), Gaps = 22/222 (9%)

Query: 18  EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQ 77
               L  L+++      L    ++L   +  NN L  L +LP      L  L VS+N L 
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP----SGLQELSVSDNQLA 194

Query: 78  GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGC 137
             +P         L       N   +S+P        L  L +S N+LT  +P   +   
Sbjct: 195 -SLPTLPS----ELYKLWAYNNRL-TSLPALPSG---LKELIVSGNRLT-SLPVLPS--- 241

Query: 138 VDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL 197
            +L+ L++S N L     P     + L  L +  N    + ESL   SS   + L  N L
Sbjct: 242 -ELKELMVSGNRLTS--LPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

Query: 198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
           S +  + L  ++       P   F+        +  +L +  
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 9e-15
 Identities = 50/284 (17%), Positives = 83/284 (29%), Gaps = 90/284 (31%)

Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
                 L +  +    + + L   + +  L + DNNL+  +P     L   + + +  N 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQ 92

Query: 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL 280
               +P+    L  L I +    ++                           +P  LC+L
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLTHLP-------------------------ALPSGLCKL 126

Query: 281 NKLQLIDLSNNILSGHIPPCLDN-TTLHESYID-TSSPESSETSFVDEGFAFYKEKKIQE 338
                  +  N L+  +P        L  S     S P                      
Sbjct: 127 ------WIFGNQLT-SLPVLPPGLQELSVSDNQLASLPAL-------------------- 159

Query: 339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP 398
                             S L +L    N+L   +P     L   Q L++S N L  S+P
Sbjct: 160 -----------------PSELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLP 197

Query: 399 STFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           +  S L     L    N+L   +P     L  L    V+ N L+
Sbjct: 198 TLPSEL---YKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 47/275 (17%), Positives = 85/275 (30%), Gaps = 86/275 (31%)

Query: 176 EILESLSKC--SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233
            +++ +  C  +    L + ++ L+  +P  L     +  +++P+N+    +P    +L 
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLTS-LPALPPEL- 83

Query: 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
             + L +S N ++                          +P+    L +L +        
Sbjct: 84  --RTLEVSGNQLT-------------------------SLPVLPPGLLELSIFSNPLT-- 114

Query: 294 SGHIPPCLDN-TTLHESYID-TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
             H+P        L       TS P                                   
Sbjct: 115 --HLPALPSGLCKLWIFGNQLTSLPVL--------------------------------- 139

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD 411
                  L EL +S N+L   +P     L +   L    N LT S+P   S L   + L 
Sbjct: 140 ----PPGLQELSVSDNQL-ASLPALPSELCK---LWAYNNQLT-SLPMLPSGL---QELS 187

Query: 412 LSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP 446
           +S N+L   +P    EL  L  +N    +L     
Sbjct: 188 VSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPS 221

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 56/221 (25%)

Query: 227 MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLI 286
           M  C  +   +LN+ ++ ++ +     + +     LV+  NN    +P    +L  L   
Sbjct: 34  MRACLNNGNAVLNVGESGLTTL--PDCLPAHIT-TLVIPDNNLT-SLPALPPELRTL--- 86

Query: 287 DLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKN 346
           ++S N L+  +P                                          + +  +
Sbjct: 87  EVSGNQLT-SLPVLPPGLL-----------------------------------ELSIFS 110

Query: 347 IAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH 406
              T+   + S L +L +  N+L   +P     L   Q L++S N L  S+P+  S L  
Sbjct: 111 NPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPSEL-- 163

Query: 407 IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
              L    N+L   +P+    L  L   +V+ N L+  +P 
Sbjct: 164 -CKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPT 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
            + L++  + L   +P  +     I TL +  NNLT S+P+    L   ++L++S N+L 
Sbjct: 42  NAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT 94

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
             +P+    L  L++F+    +L        
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 54/180 (30%)

Query: 275 IQLCQLNKLQLIDLSNNILSGHIPPCLDN--TTLHESYID-TSSPESSETSFVDEGFAFY 331
           ++ C  N   ++++  + L+  +P CL    TTL     + TS P               
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPAL------------- 79

Query: 332 KEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
                                      L  L++S N+L   +P     L  +   +    
Sbjct: 80  ------------------------PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQ 451
           +L             +  L +  N+L   +P+    L  L   +V+ N L+  +P   ++
Sbjct: 115 HLPALPSG-------LCKLWIFGNQL-TSLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 1e-27
 Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 16/243 (6%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
               +  V++++L+      +     ++K  ++S N               L  L+LS+N
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
            L  E  +        L  L L+NN ++  L        ++  L    N+   +  S S+
Sbjct: 69  VLY-ETLD--LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNISRV--SCSR 118

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQILNISD 242
               + +YL++N ++       G  S +Q++ L  N  +           D+L+ LN+  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 243 NNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD 302
           N I  +        L    L L+ N     +  +      +  I L NN L   I   L 
Sbjct: 179 NFIYDVKGQVVFAKLKT--LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 303 NTT 305
            + 
Sbjct: 235 FSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 2e-26
 Identities = 67/377 (17%), Positives = 117/377 (31%), Gaps = 83/377 (22%)

Query: 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLT 162
           +I     N N      ++++ L  +    L     +++ L LS N L   +   +    T
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
            L  L L  N   E    L   S+L  L L++N +                         
Sbjct: 59  KLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ------------------------ 93

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
                E     S++ L+ ++NNIS +    S     K  + LA+N       +     ++
Sbjct: 94  -----ELLVGPSIETLHAANNNISRV--SCSRGQGKK-NIYLANNKITMLRDLDEGCRSR 145

Query: 283 LQLIDLS-NNILSGHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKK 335
           +Q +DL  N I + +      ++       L  ++I     +                  
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK------------- 192

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
                                  L  LDLS NKL   + P+  +   +  ++L  N L  
Sbjct: 193 -----------------------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATF 455
            I       ++++  DL  N       L+        V  VA   +  K+     +  T 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 456 NESSYEGNPFLCGLPLP 472
               + G      LP P
Sbjct: 286 PTLGHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 1e-23
 Identities = 54/285 (18%), Positives = 96/285 (33%), Gaps = 21/285 (7%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
           S         LE + LS  N+  E  +  LE+ + L +  L NN +  L + P     S+
Sbjct: 50  SAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SI 101

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
             L  +NNN+   +           K   ++ N          G  + +  LDL  N++ 
Sbjct: 102 ETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSS 186
                 LA     LE+L L  N +             L+ L L  N    +       + 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           +  + L +N L   I + L     L+H  L  N F      +F    + ++  ++   + 
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

Query: 247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
            +         +   L         ++P         +LI L ++
Sbjct: 274 KLTGQNE-EECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (250), Expect = 2e-23
 Identities = 46/287 (16%), Positives = 98/287 (34%), Gaps = 20/287 (6%)

Query: 35  LLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94
           + +N  + +   + ++SL            ++  LD+S N L   I          L+  
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 95  NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHL 154
           N+S N           +++ L +LDL+NN +  E+    +     +E L  +NN++    
Sbjct: 64  NLSSNVL-YETL-DLESLSTLRTLDLNNNYVQ-ELLVGPS-----IETLHAANNNISR-- 113

Query: 155 FPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSG-KIPRWLGNLSMLQ 212
              +      + + L  N    + +      S ++ L L  N +          +   L+
Sbjct: 114 VSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 213 HIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEG 271
           H+ L  N     +  +      L+ L++S N ++ +       S +    + L +N    
Sbjct: 173 HLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV- 227

Query: 272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPES 318
            +   L     L+  DL  N           +       +   + + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (284), Expect = 3e-27
 Identities = 82/418 (19%), Positives = 141/418 (33%), Gaps = 69/418 (16%)

Query: 38  NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD----------- 86
           +NT L+     +++L  +  +     KS      + +  + + P   G+           
Sbjct: 9   SNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 87  -FLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLL 145
                     ++     SS+P    +   L SL  S N LT E+PE        L     
Sbjct: 68  CLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVDNN 121

Query: 146 SNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWL 205
           +  +L             L  L +  N   + L  L   S L+ + + +N+L  K+P   
Sbjct: 122 NLKALSD-------LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 206 GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLA 265
            +L   + I    N  E  +P E   L  L  +   +N++  +      LSL    +V  
Sbjct: 173 PSL---EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL--PDLPLSLES--IVAG 223

Query: 266 HNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFV 324
           +N  E     +L  L  L  I   NN+L   +P    +   L+      +          
Sbjct: 224 NNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL----- 275

Query: 325 DEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQ 384
                       Q           ++    +   L  L+ S N+ I  +     +L    
Sbjct: 276 -----------PQSLTFLDVSENIFSGLSELPPNLYYLNASSNE-IRSLCDLPPSLE--- 320

Query: 385 TLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            LN+S N L   +P+    L+    L  S+N L  ++P     L  L   +V +N L 
Sbjct: 321 ELNVSNNKLI-ELPALPPRLER---LIASFNHL-AEVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (282), Expect = 7e-27
 Identities = 78/399 (19%), Positives = 138/399 (34%), Gaps = 58/399 (14%)

Query: 38  NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS 97
              +             +  L     +    L+++N  L       + +  P L+    S
Sbjct: 45  EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVAS 99

Query: 98  MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPR 157
            N+  + +P    ++  L+  + +   L+   P         LEYL +SNN LE    P 
Sbjct: 100 CNSL-TELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEK--LPE 148

Query: 158 NFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILP 217
             N + L+ + +D N  +++ +      SLE +   +N L  ++P  L NL  L  I   
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYAD 203

Query: 218 ENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL 277
            N     +        SL+ +   +N +  +     + +L     + A NN    +P   
Sbjct: 204 NNS----LKKLPDLPLSLESIVAGNNILEEL---PELQNLPFLTTIYADNNLLKTLPDLP 256

Query: 278 CQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKI 336
             L  L + D         +P    + T L  S    S       +              
Sbjct: 257 PSLEALNVRDNYLT----DLPELPQSLTFLDVSENIFSGLSELPPNLY------------ 300

Query: 337 QETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS 396
                    +        +   L EL++S NKLI ++P     L   + L  S+N+L   
Sbjct: 301 ----YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-E 351

Query: 397 IPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435
           +P    NL   K L + YN L  + P     +  L + +
Sbjct: 352 VPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 5e-23
 Identities = 77/414 (18%), Positives = 137/414 (33%), Gaps = 72/414 (17%)

Query: 22  LSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQ 77
           L  L  +     E P  L ++   L  +     +L  L          L  L VSNN L+
Sbjct: 93  LESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLE 144

Query: 78  GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGC 137
             +P  + +    LK  ++  N+    +P    +   L  +   NNQL  E+PE      
Sbjct: 145 -KLPE-LQN-SSFLKIIDVDNNSL-KKLPDLPPS---LEFIAAGNNQLE-ELPEL--QNL 194

Query: 138 VDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL 197
             L  +   NNSL+  L        +L  +    N   E L  L     L  +Y  +N L
Sbjct: 195 PFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNLL 249

Query: 198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSL 257
              +P    +L  L    + +N+    +P     L  L +     + +S +  +   L+ 
Sbjct: 250 K-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

Query: 258 SKDQ-------------LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN- 303
           S ++             L +++N    E+P    +L +L     S N L+  +P    N 
Sbjct: 305 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNL 359

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
             LH  Y       +    F D            E+ +    N        +   L +L 
Sbjct: 360 KQLHVEY-------NPLREFPDI----------PESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 364 LSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           +  N L  + P    ++     L ++   +             ++     ++  
Sbjct: 403 VETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 5e-22
 Identities = 96/428 (22%), Positives = 151/428 (35%), Gaps = 93/428 (21%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
              + L++L L+   P         LES     NSL  L  LP    KSL++ + +   L
Sbjct: 73  AHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELPQSL-KSLLVDNNNLKAL 126

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
                    D  P L+Y  +S N     +P    N +FL  +D+ NN L  ++P+     
Sbjct: 127 S--------DLPPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPP-- 173

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
              LE++   NN LE    P   NL  L  +  D N  +++ +      SLE +   +N 
Sbjct: 174 --SLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNI 226

Query: 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS 256
           L       L NL  L  I    N  +  +P       SL+ LN+ DN ++ +       S
Sbjct: 227 LE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLTDL--PELPQS 278

Query: 257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYID-TS 314
           L+   L ++ N F   +      L  L   + S+N +   +     +   L+ S      
Sbjct: 279 LTF--LDVSENIFS-GLSELPPNLYYL---NASSNEIR-SLCDLPPSLEELNVSNNKLIE 331

Query: 315 SPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIP 374
            P                                          L  L  S+N L  ++P
Sbjct: 332 LPAL-------------------------------------PPRLERLIASFNHL-AEVP 353

Query: 375 PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF 434
               NL   + L++ YN L    P    +++     DL  N    ++P     L  L   
Sbjct: 354 ELPQNL---KQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQNLKQL--- 401

Query: 435 NVAHNNLS 442
           +V  N L 
Sbjct: 402 HVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 57/360 (15%), Positives = 106/360 (29%), Gaps = 79/360 (21%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG------------CVDLEYLLLSNNSL 150
           + +P    N+        + ++     P                        L L+N  L
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 151 EGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSM 210
                P      +L  L    N   E+ E      SL     +   LS   P       +
Sbjct: 84  SS--LPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP-------L 132

Query: 211 LQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFE 270
           L+++ +  N  E  +P E      L+I+++ +N++  +       SL    +   +N  E
Sbjct: 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL--PDLPPSLE--FIAAGNNQLE 186

Query: 271 GEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFA 329
            E+P +L  L  L  I   NN L   +P    +  ++             +         
Sbjct: 187 -ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEELPELQN-------- 235

Query: 330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLS 389
                                     + +L+ +    N L   +P    +L   + LN+ 
Sbjct: 236 --------------------------LPFLTTIYADNNLLK-TLPDLPPSL---EALNVR 265

Query: 390 YNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
            N LT  +P    +L  +   +  ++ L    P        L   N + N +        
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCDLPP 317

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 48/293 (16%), Positives = 95/293 (32%), Gaps = 42/293 (14%)

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
           PRN + T L+      ++  E+        S    Y + +      P   G    +    
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
           L +           C       L +++  +S +        L    LV + N+   E+P 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLSSL--PELPPHLES--LVASCNSLT-ELPE 108

Query: 276 QLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
               L  L + + +   LS  +PP L+   +  + ++      + +            KK
Sbjct: 109 LPQSLKSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 167

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
           + +                    L  +    N+L  +  P++ NL  +  +    N+L  
Sbjct: 168 LPDL----------------PPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK- 208

Query: 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEW 448
            +P    +L   +S+    N L  +   +L  L  L      +N L   +P+ 
Sbjct: 209 KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDL 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 53/246 (21%), Positives = 88/246 (35%), Gaps = 50/246 (20%)

Query: 21  RLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
            L+ +  +       P+        LE+  + +N L  L  LP    +SL  LDVS N  
Sbjct: 238 FLTTIYADNNLLKTLPDLP----PSLEALNVRDNYLTDLPELP----QSLTFLDVSENIF 289

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
                  + +  P+L Y N S N    S+     +   L  L++SNN+L  E+P      
Sbjct: 290 S-----GLSELPPNLYYLNASSNEI-RSLCDLPPS---LEELNVSNNKLI-ELPALPP-- 337

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK------------- 183
              LE L+ S N L     P      NL++L ++ N  RE  +                 
Sbjct: 338 --RLERLIASFNHLAE--VPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391

Query: 184 ---CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
                +L+ L++  N L  + P    ++  L+   +       P        D L+    
Sbjct: 392 PELPQNLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVF 447

Query: 241 SDNNIS 246
             ++  
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 67/307 (21%), Positives = 111/307 (36%), Gaps = 57/307 (18%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           LEF+   +  L  E P   L+N   L + +  NNSL  L  LP     SL  +   NN L
Sbjct: 175 LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL 227

Query: 77  QGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG 136
                 ++ + LP L       N    ++P    +   L +L++ +N LT ++PE     
Sbjct: 228 --EELPELQN-LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQS- 278

Query: 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196
              L +L +S N   G          NL  L    N  R + +      SLE L +S+N 
Sbjct: 279 ---LTFLDVSENIFSG--LSEL--PPNLYYLNASSNEIRSLCDLPP---SLEELNVSNNK 328

Query: 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS 256
           L  ++P     L   + +I   NH    +P       +L+ L++  N +          S
Sbjct: 329 LI-ELPALPPRL---ERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLREF--PDIPES 378

Query: 257 LSKDQLVLAHNNFEGEVPIQLCQL-----------------NKLQLIDLSNNILSGHIPP 299
           +      L  N+   EVP     L                   ++ + +++  +      
Sbjct: 379 VED----LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEF 434

Query: 300 CLDNTTL 306
             + T  
Sbjct: 435 AHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 373 IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLA 432
           I P+  + T +Q      +NLT  +P    N+K       ++++ +   P    E   +A
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 433 VFNVAHNNLSG 443
           V  +       
Sbjct: 62  VSRLRDCLDRQ 72

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (281), Expect = 8e-27
 Identities = 77/371 (20%), Positives = 137/371 (36%), Gaps = 44/371 (11%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDLSNNQLTG 127
           +D+S N++   +       L  L++  +        I   +F  ++ LI L L  NQ   
Sbjct: 35  VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFREILES--LSK 183
           ++      G  +LE L L+  +L+G +   NF   LT+L  L L  N+ ++I  +     
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 184 CSSLEGLYLSDN-----------NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
                 L L+ N           N  GK    L  LS +    + E            + 
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
            S+  L++S N            +++  ++    +                   D  N  
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE----TFKFTTKNIA 348
             G     +    L +S I  +  +S  + F D       + +I +     F   T    
Sbjct: 269 FKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH--- 324

Query: 349 YTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKH 406
                     L +L+LS N L G I  ++  NL +++ L+LSYN++  ++   +F  L +
Sbjct: 325 ----------LLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPN 372

Query: 407 IKSLDLSYNKL 417
           +K L L  N+L
Sbjct: 373 LKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (276), Expect = 3e-26
 Identities = 68/345 (19%), Positives = 108/345 (31%), Gaps = 55/345 (15%)

Query: 89  PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN 148
             + Y ++S+N+      TSF  +  L  L +        I  +   G   L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 149 SLEGHLFPRNF-NLTNLRRLQLDGNHFREIL---ESLSKCSSLEGLYLSDNNLSGKIPRW 204
                L    F  L NL  L L   +    +         +SLE L L DNN+       
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK----- 143

Query: 205 LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH---------HASIL 255
                     I P + F          +    +L+++ N +  I           H ++L
Sbjct: 144 ----------IQPASFFLN--------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 256 SLSKDQLV-LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTS 314
            LS   L  +       E      +   +  +DLS N     +     +           
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 315 SPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIP 374
              S           F                   T++G   S +   DLS +K I  + 
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNF-------------TFKGLEASGVKTCDLSKSK-IFALL 291

Query: 375 PQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKL 417
             +  + T ++ L L+ N +   I    F  L H+  L+LS N L
Sbjct: 292 KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 71/415 (17%), Positives = 117/415 (28%), Gaps = 105/415 (25%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
           +   F    DL+F+++          N      + L                        
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII---------------------- 83

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
             L +  N     +     + L +L+                         L L+   L 
Sbjct: 84  --LKLDYNQFL-QLETGAFNGLANLEV------------------------LTLTQCNLD 116

Query: 127 G-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFREILESLSK 183
           G  +  +       LE L+L +N+++  + P +F  N+     L L  N          K
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKV--------K 167

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
               E L     N  GK    L  LS +    + E            +  S+  L++S N
Sbjct: 168 SICEEDLL----NFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
                       +++  ++    +                   D  N    G     +  
Sbjct: 223 GFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
             L +S I  +  +S                     F   T              L +L 
Sbjct: 280 CDLSKSKI-FALLKS--------------------VFSHFTD-------------LEQLT 305

Query: 364 LSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L+ N+ I +I       LT +  LNLS N L       F NL  ++ LDLSYN +
Sbjct: 306 LAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 57/305 (18%), Positives = 106/305 (34%), Gaps = 35/305 (11%)

Query: 20  VRLSHLNLNG------EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH-KSLMLLDVS 72
             L  L L               +  T LE   L +N++  +       + +   +LD++
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 73  NNNLQGHIPVKIGDFLPSL----------KYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
            N ++  I  +                     +++          +      + +LDLS 
Sbjct: 163 FNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 123 NQLTGEIPEHL--AMGCVDLEYLLLSNNSLEGHLFPRN------------FNLTNLRRLQ 168
           N     + +    A+    ++ L+LSN+   G  F                  + ++   
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 169 LDGNHFREILESL-SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPM 227
           L  +    +L+S+ S  + LE L L+ N ++         L+ L  + L +N        
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 228 EFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLI 286
            F  LD L++L++S N+I  +    S L L    +L L  N  +        +L  LQ I
Sbjct: 342 MFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400

Query: 287 DLSNN 291
            L  N
Sbjct: 401 WLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 50/254 (19%), Positives = 94/254 (37%), Gaps = 32/254 (12%)

Query: 21  RLSHLNLN---------GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHC-----HKSL 66
           R   L+L           +  N+  ++ T L  + +    +   +L    C     + S+
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISM------------NAFDSSIPTSFGNM-- 112
             LD+S N  +  +  +  D +   K  ++ +              F      +F  +  
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 113 NFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDG 171
           + + + DLS +++   + + +     DLE L L+ N +   +    F  LT+L +L L  
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332

Query: 172 NHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC 230
           N    I          LE L LS N++     +    L  L+ + L  N  +      F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 231 QLDSLQILNISDNN 244
           +L SLQ + +  N 
Sbjct: 393 RLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 57/345 (16%), Positives = 102/345 (29%), Gaps = 101/345 (29%)

Query: 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLT 162
            +P        +  +DLS N +  E+ E       DL++L +   +    +    F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 163 NLRRLQLDGNHFREILES-LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221
           +L  L+LD N F ++     +  ++LE L L+  NL                 +L  N F
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL--------------DGAVLSGNFF 125

Query: 222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN 281
           +         L SL++L + DNNI  I   +                F          + 
Sbjct: 126 KP--------LTSLEMLVLRDNNIKKIQPASF---------------FLN--------MR 154

Query: 282 KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341
           +  ++DL+ N +                    S  E                +    T  
Sbjct: 155 RFHVLDLTFNKV-------------------KSICEE----------DLLNFQGKHFTLL 185

Query: 342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF 401
             +                  D++   L  +        T I TL+LS N    S+   F
Sbjct: 186 RLSSITL-------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 402 SNLKHIKSL-----DLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
            +      +       SYN           + +      +  + +
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 15  HDLEFVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHCHKSL 66
             LE   +   +L+          +  + T LE   L  N +       F         L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF----WGLTHL 325

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDLSNNQL 125
           + L++S N L   I  ++ + L  L+  ++S N    ++   SF  +  L  L L  NQL
Sbjct: 326 LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQL 383

Query: 126 TGEIPEHLAMGCVDLEYLLLSNNSL 150
              +P+ +      L+ + L  N  
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTNPW 407

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 5e-25
 Identities = 67/371 (18%), Positives = 119/371 (32%), Gaps = 79/371 (21%)

Query: 59  PIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISL 118
           P  C   L ++  S+  L+  +P  +    P     ++  N         F N+  L +L
Sbjct: 26  PFRCQCHLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTL 81

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL 178
            L NN+++ +I        V LE L LS N L+    P       L+ L++  N   ++ 
Sbjct: 82  ILINNKIS-KISPGAFAPLVKLERLYLSKNQLK--ELPEKM-PKTLQELRVHENEITKVR 137

Query: 179 E-SLSKCSSLEGLYLSDNNLSGKI--PRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL 235
           +   +  + +  + L  N L            +  L +I + + +    IP       SL
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSL 194

Query: 236 QILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
             L++  N I+ +   AS+  L+   +L L+ N+        L     L+ + L+NN L 
Sbjct: 195 TELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
             +P  L +                                                   
Sbjct: 254 -KVPGGLADHK------------------------------------------------- 263

Query: 355 VISYLSELDLSYNKLIGQIPPQ-------IGNLTRIQTLNLSYNNLTGSI--PSTFSNLK 405
              Y+  + L  N  I  I                   ++L  N +      PSTF  + 
Sbjct: 264 ---YIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 406 HIKSLDLSYNK 416
              ++ L   K
Sbjct: 320 VRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 68/329 (20%), Positives = 117/329 (35%), Gaps = 90/329 (27%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
            +  S+  L  ++P+ L     D   L L NN +   +   +F NL NL  L L  N   
Sbjct: 35  VVQCSDLGLE-KVPKDLP---PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS 89

Query: 176 EI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
           +I   + +    LE LYLS N L  ++P        LQ + + EN         F  L+ 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           + ++ +  N +                  + +  F+G        + KL  I +++  + 
Sbjct: 147 MIVVELGTNPLKSSG--------------IENGAFQG--------MKKLSYIRIADTNI- 183

Query: 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
                         + I    P S                                    
Sbjct: 184 --------------TTIPQGLPPS------------------------------------ 193

Query: 355 VISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
               L+EL L  NK I ++       L  +  L LS+N+++     + +N  H++ L L+
Sbjct: 194 ----LTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            NKL  K+P  L +   + V  + +NN+S
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 5e-21
 Identities = 57/297 (19%), Positives = 99/297 (33%), Gaps = 47/297 (15%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
               F +  +L  + L + N   +          KLE  +L  N L     LP    K+L
Sbjct: 68  KDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTL 123

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSI--PTSFGNMNFLISLDLSNNQ 124
             L V  N +   +   + + L  +    +  N   SS     +F  M  L  + +++  
Sbjct: 124 QELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLDGNHFREI-LES 180
           +T  IP+ L      L  L L  N    ++         L NL +L L  N    +   S
Sbjct: 183 IT-TIPQGL---PPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSFNSISAVDNGS 235

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG------PIPMEFCQLDS 234
           L+    L  L+L++N L  K+P  L +   +Q + L  N+           P    +  S
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
              +++  N +                  +  + F          +     + L N 
Sbjct: 295 YSGVSLFSNPVQYWE--------------IQPSTFRC--------VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 53/298 (17%), Positives = 97/298 (32%), Gaps = 85/298 (28%)

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
           +LR +Q       ++ + L        L L +N ++                 + +  F+
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT----------------EIKDGDFK 73

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLN 281
                    L +L  L + +N IS I   A    L K ++L L+ N  + E+P ++    
Sbjct: 74  N--------LKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLK-ELPEKM--PK 121

Query: 282 KLQLIDLSNNILSGHIPP------------CLDNTTLHESYIDTSSPESSETSFVDEGFA 329
            LQ + +  N ++  +               L    L  S I+                 
Sbjct: 122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG--------------- 165

Query: 330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLS 389
                     F+   K             LS + ++    I  IP   G    +  L+L 
Sbjct: 166 ---------AFQGMKK-------------LSYIRIADTN-ITTIPQ--GLPPSLTELHLD 200

Query: 390 YNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
            N +T    ++   L ++  L LS+N +       L     L   ++ +N L  K+P 
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (268), Expect = 6e-25
 Identities = 60/295 (20%), Positives = 95/295 (32%), Gaps = 55/295 (18%)

Query: 22  LSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH-KSLMLLDVSNNNLQGHI 80
            S  N              K E   L   +      L   C       L ++  NL   +
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SL 74

Query: 81  PVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL 140
           P  +    P +    I+ NA   S+P    +   L  LD  +N+L+  +PE  A     L
Sbjct: 75  PDNLP---PQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPAS----L 122

Query: 141 EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGK 200
           ++L + NN L   + P       L  +  D N    + E  +   SLE L + +N L+  
Sbjct: 123 KHLDVDNNQLT--MLPEL--PALLEYINADNNQLTMLPELPT---SLEVLSVRNNQLT-F 174

Query: 201 IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQ----ILNISDNNISGIYHHASILS 256
           +P    +L  L    +  N  E  +P    +    +         +N I+          
Sbjct: 175 LPELPESLEALD---VSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT---------- 220

Query: 257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI 311
                           +P  +  L+    I L +N LS  I   L   T    Y 
Sbjct: 221 ---------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.1 bits (244), Expect = 8e-22
 Identities = 51/355 (14%), Positives = 97/355 (27%), Gaps = 86/355 (24%)

Query: 111 NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHL-FPRNFNLTNLRRLQL 169
           N NF +S +   N ++              E   L   +    +   +   +     LQL
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 170 DGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEF 229
           +  +   + ++L     +  L ++ N L   +P    +L  L      +N     +P   
Sbjct: 67  NRLNLSSLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELP 119

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
               SL+ L++ +N ++                          +P     L  +   +  
Sbjct: 120 A---SLKHLDVDNNQLT-------------------------MLPELPALLEYI---NAD 148

Query: 290 NNILSGHIPPCLDN-TTLHESYID-TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI 347
           NN L+  +P    +   L       T  PE                              
Sbjct: 149 NNQLT-MLPELPTSLEVLSVRNNQLTFLPEL----------------------------- 178

Query: 348 AYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQT----LNLSYNNLTGSIPSTFSN 403
                      L  LD+S N L   +P         +          N +T  IP    +
Sbjct: 179 --------PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNES 458
           L    ++ L  N L  +I   L +      ++      S    +         ++
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 1e-18
 Identities = 57/241 (23%), Positives = 86/241 (35%), Gaps = 35/241 (14%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLE--SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN 74
              ++L+ LNL+   P+ L    T LE   N L   SLP L         SL  LD  +N
Sbjct: 61  FSELQLNRLNLS-SLPDNLPPQITVLEITQNAL--ISLPELP-------ASLEYLDACDN 110

Query: 75  NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA 134
            L   +P    +   SLK+ ++  N   + +P        L  ++  NNQLT  +PE   
Sbjct: 111 RLS-TLP----ELPASLKHLDVDNNQL-TMLPELPAL---LEYINADNNQLT-MLPELPT 160

Query: 135 MGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLE----GL 190
                LE L + NN L     P      +L  L +  N    +     +    E      
Sbjct: 161 S----LEVLSVRNNQLTF--LPEL--PESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212

Query: 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH 250
              +N ++  IP  + +L     IIL +N     I     Q  +    +      S    
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 251 H 251
            
Sbjct: 272 Q 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 50/218 (22%), Positives = 76/218 (34%), Gaps = 31/218 (14%)

Query: 19  FVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN 74
             +++ L +        P  L  +   L++     ++LP L         SL  LDV NN
Sbjct: 79  PPQITVLEITQNALISLPE-LPASLEYLDACDNRLSTLPELP-------ASLKHLDVDNN 130

Query: 75  NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA 134
            L   +P         L+Y N   N   + +P    +   L  L + NNQLT  +PE   
Sbjct: 131 QLT-MLPELPA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPE 180

Query: 135 MGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR----LQLDGNHFREILESLSKCSSLEGL 190
                LE L +S N LE  L        +        +   N    I E++        +
Sbjct: 181 ----SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235

Query: 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME 228
            L DN LS +I   L   +       P  +F      +
Sbjct: 236 ILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 10/152 (6%)

Query: 22  LSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIP 81
           L ++N +      L E  T LE   + NN L  L  LP    +SL  LDVS N L+  +P
Sbjct: 142 LEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELP----ESLEALDVSTNLLE-SLP 196

Query: 82  VKIGDFLPSLKYFNISMNAFD---SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCV 138
                     +   I     +   + IP +  +++   ++ L +N L+            
Sbjct: 197 AVPVR-NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQT 254

Query: 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170
                             +N     L      
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (260), Expect = 8e-25
 Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 59  PIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISL 118
           P  C  S   +  ++  L   +P        S     +  N   S     F  +  L  L
Sbjct: 2   PSRCSCSGTEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKL 57

Query: 119 DLSNNQLT-GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFRE 176
            LS+N L+          G   L+YL LS N +       NF  L  L  L    ++ ++
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 177 ILES--LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF-EGPIPMEFCQLD 233
           + E        +L  L +S  +           LS L+ + +  N F E  +P  F +L 
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 234 SLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
           +L  L++S   +  +    +  SLS    L ++HNNF          LN LQ++D S N 
Sbjct: 176 NLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 293 LS 294
           + 
Sbjct: 235 IM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 5e-18
 Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 16/224 (7%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNN---SLPGLFLLPIHC 62
               F     L  + LS   L+     +      T L+   L  N   ++   F      
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LG 99

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
            + L  LD  ++NL+      +   L +L Y +IS      +    F  ++ L  L ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLDGNHFREI-L 178
           N         +     +L +L LS      L    F    +L++L+ L +  N+F  +  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDT 216

Query: 179 ESLSKCSSLEGLYLSDNNLSGKIPRWLGNL-SMLQHIILPENHF 221
                 +SL+ L  S N++     + L +  S L  + L +N F
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 357 SYLSELDLSYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
           + L++L LS N L   G         T ++ L+LS+N +  ++ S F  L+ ++ LD  +
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 415 NKLDGKIPLQL-VELNTLAVFNVAHNNLS 442
           + L       + + L  L   +++H +  
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 83/265 (31%)

Query: 182 SKCS-SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
           S+CS S   +  +   L+  +P  +   S    + L  N  +      F +L  L  L++
Sbjct: 3   SRCSCSGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 241 SDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC 300
           S N +S                     +  G           L+ +DLS N +       
Sbjct: 60  SSNGLSFKG--------------CCSQSDFG--------TTSLKYLDLSFNGVI------ 91

Query: 301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLS 360
                                              +   F    +             L 
Sbjct: 92  ----------------------------------TMSSNFLGLEQ-------------LE 104

Query: 361 ELDLSYNKLIGQIPPQ--IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK-L 417
            LD  ++  + Q+       +L  +  L++S+ +   +    F+ L  ++ L ++ N   
Sbjct: 105 HLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 418 DGKIPLQLVELNTLAVFNVAHNNLS 442
           +  +P    EL  L   +++   L 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLT--GSIPSTFSNLKHIKSLDLSYN 415
            + L+L  NK +  +P  +   LT++  L+LS N L+  G    +      +K LDLS+N
Sbjct: 30  ATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTA 450
            +   +    + L  L   +  H+NL  ++ E++ 
Sbjct: 89  GV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSV 121

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 5e-24
 Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 14/243 (5%)

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120
            C      +  +   L   +P        + +Y N+  N        +F +++ L  L L
Sbjct: 51  SCSNQFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE 179
             N +  +I      G   L  L L +N L   +    F  L+ LR L L  N    I  
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 180 -SLSKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQI 237
            + ++  SL  L L +      I       L  L+++ L   + +  +P     L  L+ 
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEE 222

Query: 238 LNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH 296
           L +S N+   I    S   LS   +L + ++            L  L  ++L++N LS  
Sbjct: 223 LEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 297 IPP 299
           +P 
Sbjct: 281 LPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 17/260 (6%)

Query: 14  QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSN 73
            +    V  +   L+ E P  +  N   L    L+ N++  +          L +L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 74  NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDLSNNQLTGEIPEH 132
           N+++  I V   + L SL    +  N   + IP+ +F  ++ L  L L NN +   IP +
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

Query: 133 LAMGCVDLEYLLLSNN----SLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLE 188
                  L  L L        +    F     L NL+ L L   + +++  +L+    LE
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNIKDM-PNLTPLVGLE 221

Query: 189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI 248
            L +S N+     P     LS L+ + +  +         F  L SL  LN++ NN+S +
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 249 YHHASILSLSKDQLVLAHNN 268
            H      L     +  H+N
Sbjct: 282 PHDL-FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 61/331 (18%), Positives = 109/331 (32%), Gaps = 88/331 (26%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNH 173
              +  +   L+ E+P+ +     +  YL L  N+++  +    F +L +L  LQL  N 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 174 FREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
            R+I   + +  +SL  L L DN L+                ++P   FE         L
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT----------------VIPSGAFEY--------L 146

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
             L+ L + +N I                  +    F          +  L  +DL    
Sbjct: 147 SKLRELWLRNNPIE----------------SIPSYAFNR--------VPSLMRLDLGELK 182

Query: 293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYR 352
              +I                               AF     ++        NI     
Sbjct: 183 KLEYISE----------------------------GAFEGLFNLKY-LNLGMCNIKDMPN 213

Query: 353 GRVISYLSELDLSYNKLIGQIPPQ-IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD 411
              +  L EL++S N    +I P     L+ ++ L +  + ++    + F  L  +  L+
Sbjct: 214 LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 412 LSYNKLDGKIPLQLVE-LNTLAVFNVAHNNL 441
           L++N L   +P  L   L  L   ++ HN  
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 56/307 (18%), Positives = 97/307 (31%), Gaps = 59/307 (19%)

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
              ++        E+ + +   S+   L L +NN+         +L  L+ + L  N   
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLN 281
                 F  L SL  L + DN ++ I    +   LSK  +L L +N  E        ++ 
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 282 KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341
            L  +DL       +I                                          F+
Sbjct: 172 SLMRLDLGELKKLEYISE--------------------------------------GAFE 193

Query: 342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF 401
                            L  L+L    +  +  P +  L  ++ L +S N+     P +F
Sbjct: 194 GLFN-------------LKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 402 SNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNES-SY 460
             L  +K L +  +++          L +L   N+AHNNLS  +P        +      
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

Query: 461 EGNPFLC 467
             NP+ C
Sbjct: 298 HHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
               F     L  + L  L           E    L+                       
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY---------------------- 200

Query: 67  MLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
             L++   N++      + +   L  L+   +S N F    P SF  ++ L  L + N+Q
Sbjct: 201 --LNLGMCNIK-----DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGN 172
           ++  I  +   G   L  L L++N+L   L    F  L  L  L L  N
Sbjct: 254 VS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (250), Expect = 2e-23
 Identities = 69/374 (18%), Positives = 121/374 (32%), Gaps = 86/374 (22%)

Query: 59  PIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISL 118
           P  CH  L ++  S+  L+  +P +I    P     ++  N         F  +  L +L
Sbjct: 28  PFGCHCHLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYAL 83

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLDGNHFR 175
            L NN+++ +I E        L+ L +S N    +  +L        +L  L++  N  R
Sbjct: 84  VLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIR 136

Query: 176 EILE-SLSKCSSLEGLYLSDNNLSGKI--PRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
           ++ +   S   ++  + +  N L      P     L  L ++ + E    G IP +    
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--P 192

Query: 233 DSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
           ++L  L++  N I  I     +L  SK  +L L HN         L  L  L+ + L NN
Sbjct: 193 ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 292 ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
            LS  +P  L +                                                
Sbjct: 252 KLS-RVPAGLPDLK---------------------------------------------- 264

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQI-------GNLTRIQTLNLSYNNLTGSI--PSTFS 402
                  L  + L  N  I ++                   ++L  N +      P+TF 
Sbjct: 265 ------LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 403 NLKHIKSLDLSYNK 416
            +    ++     K
Sbjct: 318 CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 70/338 (20%), Positives = 111/338 (32%), Gaps = 103/338 (30%)

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGN 172
            L  +  S+  L   +P+ ++    D   L L NN +   L   +F  L +L  L L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 173 HFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQ 231
              +I E + S    L+ LY+S N+L                  +P N            
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLVE----------------IPPNLP---------- 122

Query: 232 LDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
             SL  L I DN I                  +    F G        L  +  I++  N
Sbjct: 123 -SSLVELRIHDNRIR----------------KVPKGVFSG--------LRNMNCIEMGGN 157

Query: 292 -ILSGHIPP-CLDNTTLHESYID----TSSPESSETSFVDEGFAFYKEKKIQETFKFTTK 345
            + +    P   D   L+   I     T  P+    +                       
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET----------------------- 194

Query: 346 NIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNL 404
                        L+EL L +NK I  I  +     +++  L L +N +      + S L
Sbjct: 195 -------------LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 405 KHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
             ++ L L  NKL  ++P  L +L  L V  +  NN++
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 30/252 (11%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHC 62
               F     L+ + +S  +L  E P  L  +   L    + +N +     G+F      
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS---LVELRIHDNRIRKVPKGVF----SG 145

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLP-SLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
            +++  +++  N L+ +   + G F    L Y  IS                 L  L L 
Sbjct: 146 LRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLD 201

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILES 180
           +N++   I     +    L  L L +N +   +   +   L  LR L LD N    +   
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAG 259

Query: 181 LSKCSSLEGLYLSDNNLSGKIP-------RWLGNLSMLQHIILPENHFEGPI--PMEFCQ 231
           L     L+ +YL  NN++ K+         +    +    I L  N        P  F  
Sbjct: 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 232 LDSLQILNISDN 243
           +     +   + 
Sbjct: 319 VTDRLAIQFGNY 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (252), Expect = 6e-23
 Identities = 76/398 (19%), Positives = 151/398 (37%), Gaps = 27/398 (6%)

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG 127
           L+D S N L  H+P  +          NIS N       +   +++ L  L +S+N++  
Sbjct: 4   LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILES--LSKCS 185
            +   +     +LEYL LS+N L            NL+ L L  N F  +         S
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN---HFEGPIPMEFCQLDSLQILNISD 242
            L+ L LS  +L       + +L++ + +++        E P  ++    +SL I+  ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 243 NNISGIYHHAS----ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS---- 294
                I   +      L LS  + VL  N     + I        +L +L+ N +     
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 295 --GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQ-ETFKFTTKNIAYTY 351
               I   + +TT+    I ++     +  F D  ++    K +              +Y
Sbjct: 236 SFIRILQLVWHTTVWYFSI-SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD 411
              + S ++  + + +            ++    L+ S N LT ++     +L  +++L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 412 LSYNKLD--GKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
           L  N+L    KI     ++ +L   +++ N++S    +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 7/220 (3%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLN--GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH 63
              +F Y    L+ + +  +  +  G   +++ E  + +       +    + +L     
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS--SIPTSFGNMNFLISLDLS 121
              + LD SNN L      +    L  L+   + MN       I      M  L  LD+S
Sbjct: 324 SPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESL 181
            N ++ +  +        L  L +S+N L   +F        ++ L L  N  + I + +
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIKSIPKQV 440

Query: 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221
            K  +L+ L ++ N L          L+ LQ I L  N +
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 39/237 (16%), Positives = 94/237 (39%), Gaps = 15/237 (6%)

Query: 17  LEFVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVS 72
           + +  +S++ L G       ++   +   L  + ++++              ++ + + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 73  NNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEH 132
            +  +  + +     +    + + S N    ++  + G++  L +L L  NQL  E+ + 
Sbjct: 309 VSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI 366

Query: 133 LAM--GCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESLSKC--SSL 187
             M      L+ L +S NS+       +     +L  L +  N    + +++ +C    +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI---LTDTIFRCLPPRI 423

Query: 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
           + L L  N +   IP+ +  L  LQ + +  N  +      F +L SLQ + +  N 
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 81/447 (18%), Positives = 140/447 (31%), Gaps = 56/447 (12%)

Query: 19  FVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN 74
             +L  L ++          + + N +LE   L +N L  +     H   +L  LD+S N
Sbjct: 44  LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFN 100

Query: 75  NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL-ISLDLSNNQLTGEIPEHL 133
                   K    +  LK+  +S    + S      ++N   + L L       E PE L
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 134 A-MGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN-------HFREILESLSKCS 185
                  L  +  +N      L      + NL    +          +F  IL  L    
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 186 SLEGLYLSDNNLSGKIPR------WLGNLSML--QHIILPENHFEGPIPMEFCQLDSLQI 237
            L  L L++   +           W   +      ++ L               L +L I
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 238 LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI 297
             +  +       +   +  + +      +       +   +++    +D SNN+L+  +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340

Query: 298 PPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI 356
                + T L    +  +  +              + K                      
Sbjct: 341 FENCGHLTELETLILQMNQLKELS----KIAEMTTQMKS--------------------- 375

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
             L +LD+S N +              + +LN+S N LT +I         IK LDL  N
Sbjct: 376 --LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLS 442
           K+   IP Q+V+L  L   NVA N L 
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 8e-14
 Identities = 53/296 (17%), Positives = 109/296 (36%), Gaps = 17/296 (5%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
              +   +        +  +L+  FP          E +F+L+ S+  +  L +   K +
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPT-------NKEFHFILDVSVKTVANLELSNIKCV 200

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
           +  +  +  L     ++    L +L   NI                  +    +SN +L 
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 127 GEIP-EHLAMGCVDLEYLLLSNNSLEGHLFPRNF---NLTNLRRLQLDGNHFREI-LESL 181
           G++           L+ L +     +   FP+++     +N+       +  R + +   
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE--GPIPMEFCQLDSLQILN 239
           SK S    L  S+N L+  +    G+L+ L+ +IL  N  +    I     Q+ SLQ L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 240 ISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           IS N++S                L ++ N     +   L    +++++DL +N + 
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 19/259 (7%)

Query: 22  LSHLNLNGEFPNWLLE--NNTKLESNFLLNNSLPGLFLLPI-----HCHKSLMLLDVSNN 74
           L+++         +L+   +T +    + N  L G              K+L +  V ++
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 75  NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA 134
                    I +   ++   N +++            ++  + LD SNN LT +      
Sbjct: 287 VFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENC 344

Query: 135 MGCVDLEYLLLSNNSLEGHLFPRNF---NLTNLRRLQLDGNHFREIL--ESLSKCSSLEG 189
               +LE L+L  N L+  L         + +L++L +  N           S   SL  
Sbjct: 345 GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 190 LYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIY 249
           L +S N L+  I R L     ++ + L  N  +  IP +  +L++LQ LN++ N +  + 
Sbjct: 404 LNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSV- 459

Query: 250 HHASILSLSKDQLVLAHNN 268
                  L+  Q +  H N
Sbjct: 460 PDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 5e-13
 Identities = 55/289 (19%), Positives = 101/289 (34%), Gaps = 24/289 (8%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           +         L+           + L  N +       + +L +  H ++    +SN  L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 77  QGHIPVKIGDF----LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEH 132
           QG +  +  D+    L +L    +  + F       +   + +   + + +     +   
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHML 318

Query: 133 LAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI---LESLSKCSSLE 188
                    +L  SNN L       N  +LT L  L L  N  +E+    E  ++  SL+
Sbjct: 319 CPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 189 GLYLSDNNLSGKIPR----WLGNLSML--QHIILPENHFEGPIPMEFCQLDSLQILNISD 242
            L +S N++S    +    W  +L  L     IL +  F        C    +++L++  
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-------CLPPRIKVLDLHS 430

Query: 243 NNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
           N I  I      L   + +L +A N  +        +L  LQ I L  N
Sbjct: 431 NKIKSIPKQVVKLEALQ-ELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 60/240 (25%), Positives = 88/240 (36%), Gaps = 14/240 (5%)

Query: 59  PIHC---HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL 115
           P  C   ++  +        LQ  +P        + +   +  N        SF     L
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNL 58

Query: 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHF 174
             L L +N L   I      G   LE L LS+N+    + P  F  L  L  L LD    
Sbjct: 59  TILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 175 REI-LESLSKCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
           +E+        ++L+ LYL DN L   +P     +L  L H+ L  N         F  L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 233 DSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
            SL  L +  N ++ + H  +   L +   L L  NN        L  L  LQ + L++N
Sbjct: 177 HSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 39/174 (22%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHC 62
               F     LE + LS                 +L +  L    L    PGLF      
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF----RG 127

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
             +L  L + +N LQ  +P      L +L +  +  N   S    +F  ++ L  L L  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 123 NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
           N++   +  H       L  L L  N+L   L       L  L+ L+L+ N + 
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 33/186 (17%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
           +       L   +P  +       + + L  N +  H+   +F    NL  L L  N   
Sbjct: 15  TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA 69

Query: 176 EILE-SLSKCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233
            I   + +  + LE L LSDN     +       L  L  + L     +   P  F  L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
           +LQ L + DN +  +                    F          L  L  + L  N +
Sbjct: 130 ALQYLYLQDNALQALPDDT----------------FRD--------LGNLTHLFLHGNRI 165

Query: 294 SGHIPP 299
           S  +P 
Sbjct: 166 S-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 59/237 (24%)

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
           ++ + ++L  N +S            L  + L  N         F  L  L+ L++SDN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 245 -ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL-- 301
            +  +                    F G        L +L  + L    L   + P L  
Sbjct: 92  QLRSVDPAT----------------FHG--------LGRLHTLHLDRCGLQ-ELGPGLFR 126

Query: 302 DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361
               L   Y+       +    + +            TF+                 L+ 
Sbjct: 127 GLAALQYLYLQ-----DNALQALPDD-----------TFRDLGN-------------LTH 157

Query: 362 LDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L L  N+ I  +P +    L  +  L L  N +    P  F +L  + +L L  N L
Sbjct: 158 LFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L +LDLS N  +  + P     L R+ TL+L    L   +    F  L  ++ L L  N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 417 LDGKIPLQ-LVELNTLAVFNVAHNNLS 442
           L   +P     +L  L    +  N +S
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L  L L  N  +  +P     +L  +  L L  N ++      F  L  +  L L  N++
Sbjct: 131 LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY-EGNPFLC 467
               P    +L  L    +  NNLS  +P          +      NP++C
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
           +    + L  N+ I  +P         +  L L  N L     + F+ L  ++ LDLS N
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 416 KLDGKIPLQ-LVELNTLAVFNVAHNNLS 442
                +       L  L   ++    L 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 9e-22
 Identities = 68/242 (28%), Positives = 103/242 (42%), Gaps = 10/242 (4%)

Query: 54  GLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN 113
            L  +P     +  LL++  N +Q  I V     L  L+   +S N   +    +F  + 
Sbjct: 54  NLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQL-DG 171
            L +L+L +N+LT  IP    +    L+ L L NN +E  +    F  + +LRRL L + 
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170

Query: 172 NHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC 230
                I   +    S+L  L L+  NL  +IP  L  L  L  + L  NH     P  F 
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
            L  LQ L +  + I  I  +A   +L    ++ LAHNN           L+ L+ I L 
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 290 NN 291
           +N
Sbjct: 288 HN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 53/241 (21%), Positives = 87/241 (36%), Gaps = 34/241 (14%)

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120
            C      +     NL+  +P  I     + +  N+  N        SF ++  L  L L
Sbjct: 40  SCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI-L 178
           S N +   I      G  +L  L L +N L   +    F  L+ L+ L L  N    I  
Sbjct: 96  SRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 179 ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238
            + ++  SL  L L +                L +I   E  FEG        L +L+ L
Sbjct: 154 YAFNRIPSLRRLDLGELK-------------RLSYI--SEGAFEG--------LSNLRYL 190

Query: 239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
           N++  N+  I +   ++ L +  L L+ N+     P     L  LQ + +  + +   I 
Sbjct: 191 NLAMCNLREIPNLTPLIKLDE--LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE 247

Query: 299 P 299
            
Sbjct: 248 R 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 56/235 (23%), Positives = 85/235 (36%), Gaps = 18/235 (7%)

Query: 19  FVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHCHKSLMLLD 70
                 LNL+            ++   LE   L  N +     G F    +   +L  L+
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLE 118

Query: 71  VSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS-NNQLTGEI 129
           + +N L   IP     +L  LK   +  N  +S    +F  +  L  LDL    +L+  I
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YI 176

Query: 130 PEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLE 188
            E    G  +L YL L+  +L     P    L  L  L L GNH   I   S      L+
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
            L++  + +         NL  L  I L  N+        F  L  L+ +++  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 58/282 (20%), Positives = 103/282 (36%), Gaps = 37/282 (13%)

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
              ++     + RE+ + +S  ++   L L +N +         +L  L+ + L  NH  
Sbjct: 44  QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
                 F  L +L  L + DN ++ I + A                F          L+K
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGA----------------FVY--------LSK 137

Query: 283 LQLIDLSNNILSGHIPPCL--DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
           L+ + L NN +   IP        +L    +     E    S++ EG AF     ++   
Sbjct: 138 LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG----ELKRLSYISEG-AFEGLSNLR-YL 190

Query: 341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS 399
                N+        +  L ELDLS N  +  I P     L  +Q L +  + +     +
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

Query: 400 TFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
            F NL+ +  ++L++N L          L+ L   ++ HN  
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 53/267 (19%), Positives = 84/267 (31%), Gaps = 74/267 (27%)

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
           +    +     NL  ++P  +   +  + + L EN  +      F  L  L+IL +S N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 245 ISGIYHHA-------SILSLSKDQL-VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH 296
           I  I   A       + L L  ++L  + +  F          L+KL+ + L NN +   
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY--------LSKLKELWLRNNPIE-S 150

Query: 297 IPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI 356
           IP                                         F                
Sbjct: 151 IPS--------------------------------------YAFNRIPS----------- 161

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
             L  LDL   K +  I       L+ ++ LNL+  NL   IP   + L  +  LDLS N
Sbjct: 162 --LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLS 442
            L    P     L  L    +  + + 
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
               F     L  + L  L           E  + L                        
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY---------------------- 189

Query: 67  MLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
             L+++  NL+     +I +   L  L   ++S N   +  P SF  +  L  L +  +Q
Sbjct: 190 --LNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGN 172
           +   I  +       L  + L++N+L   L    F  L +L R+ L  N
Sbjct: 243 IQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L  L+L+   L  +  P +  L ++  L+LS N+L+   P +F  L H++ L +  +++ 
Sbjct: 187 LRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWT-AQFATFNESSYEGNPFLC 467
                    L +L   N+AHNNL+  +P                 NP+ C
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L  L LS N  I  I       L  + TL L  N LT +IP+  F  L  +K L L  N 
Sbjct: 90  LEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP 147

Query: 417 LDGKIPLQL-VELNTLAVFNVAHNNLSGKIPE 447
           ++  IP      + +L   ++        I E
Sbjct: 148 IE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 65/324 (20%), Positives = 114/324 (35%), Gaps = 65/324 (20%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNF 159
           S +  +      + SLDLSNN++T  I       CV+L+ L+L++N   ++E   F    
Sbjct: 48  SGLTEA------VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSF---S 97

Query: 160 NLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILP 217
           +L +L  L L  N+   +  S     SSL  L L  N            +L+ LQ + + 
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 218 ENHFEGPIPME-FCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPI 275
                  I  + F  L  L+ L I  +++       S+ S+     L+L        + I
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 276 QLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
            +   + ++ ++L +  L           T H S + T    S    F            
Sbjct: 217 FVDVTSSVECLELRDTDLD----------TFHFSELSTGETNSLIKKF------------ 254

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
                                     + ++   L  Q+   +  ++ +  L  S N L  
Sbjct: 255 ----------------------TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK- 290

Query: 396 SIP-STFSNLKHIKSLDLSYNKLD 418
           S+P   F  L  ++ + L  N  D
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 7e-19
 Identities = 48/248 (19%), Positives = 102/248 (41%), Gaps = 19/248 (7%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
           ++  LD+SNN +  +I         +L+   ++ N  ++    SF ++  L  LDLS N 
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFREILES-- 180
           L+  +          L +L L  N  +  L   +   +LT L+ L++        ++   
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
            +  + LE L +  ++L    P+ L ++  + H+IL        + +      S++ L +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 241 SDNNISGIYHHASILSLSKDQLV---------LAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
            D ++    H + + +   + L+         +   +   +V   L Q++ L  ++ S N
Sbjct: 230 RDTDLDTF-HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 292 ILSGHIPP 299
            L   +P 
Sbjct: 288 QLKS-VPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 7e-18
 Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 21/252 (8%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHC 62
           S +      +L+ + L+  N           +   LE   L  N L       F      
Sbjct: 68  SNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF----KP 122

Query: 63  HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDLS 121
             SL  L++  N  +      +   L  L+   +      + I    F  + FL  L++ 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLT--NLRRLQLDGNHFRE 176
            + L             ++ +L+L       L         ++    LR   LD  HF E
Sbjct: 183 ASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 177 I----LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
           +      SL K  +   + ++D +L  ++ + L  +S L  +    N  +      F +L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300

Query: 233 DSLQILNISDNN 244
            SLQ + +  N 
Sbjct: 301 TSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 7e-18
 Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 30/272 (11%)

Query: 19  FVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSL----PGLFLLPIHCHKSLMLLD 70
              +  L+L+        N  L+    L++  L +N +       F        SL  LD
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF----SSLGSLEHLD 106

Query: 71  VSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTS-FGNMNFLISLDLSNNQLTGEI 129
           +S N L  ++       L SL + N+  N + +   TS F ++  L  L + N     +I
Sbjct: 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 130 PEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE-SLSKCSSL 187
                 G   LE L +  + L+    P++  ++ N+  L L       +LE  +   SS+
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 188 EGLYLSDNNLSGK--------IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
           E L L D +L               L      +++ + +      +     Q+  L  L 
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 240 ISDNNISGIYHHA--SILSLSKDQLVLAHNNF 269
            S N +  +       + SL   ++ L  N +
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQ--KIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 13/224 (5%)

Query: 8   PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH-KSL 66
            + F     LE + LS+ N      +   +  + L    LL N    L    +  H   L
Sbjct: 93  EDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
            +L V N +    I  K    L  L+   I  +   S  P S  ++  +  L L   Q  
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 127 GEIPEHLAMGCVDLEYLLLSNN--------SLEGHLFPRNFNLTNLRRLQLDGNHFREIL 178
             + E        +E L L +          L              R +++      +++
Sbjct: 212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

Query: 179 ESLSKCSSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPENHF 221
           + L++ S L  L  S N L   +P      L+ LQ I L  N +
Sbjct: 271 KLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 6e-14
 Identities = 61/367 (16%), Positives = 112/367 (30%), Gaps = 102/367 (27%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
               S+  L   IP  L      ++ L LSNN +  ++   +     NL+ L L  N   
Sbjct: 35  ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN 89

Query: 176 EILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
            I E S S   SLE L LS N LS                 L  + F+         L S
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLS----------------NLSSSWFKP--------LSS 125

Query: 235 LQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQ-LCQLNKLQLIDLSNNI 292
           L  LN+  N    +   +    L+K   L + + +   ++  +    L  L+ +++  + 
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYR 352
           L  + P  L +                                                 
Sbjct: 186 LQSYEPKSLKS------------------------------------------------- 196

Query: 353 GRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTG----SIPS----TFSN 403
              I  +S L L   +    +        + ++ L L   +L       + +    +   
Sbjct: 197 ---IQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY--- 460
               +++ ++   L  ++   L +++ L     + N L   +P+    F           
Sbjct: 253 KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGI--FDRLTSLQKIWL 308

Query: 461 EGNPFLC 467
             NP+ C
Sbjct: 309 HTNPWDC 315

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 15/177 (8%)

Query: 9   NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLML 68
           + F H   L+ +R+ +++   +         T LE   +  + L       +   +++  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFD----SSIPT----SFGNMNFLISLDL 120
           L +        +     D   S++   +     D    S + T    S        ++ +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFR 175
           ++  L       L      L  L  S N L+    P      LT+L+++ L  N + 
Sbjct: 262 TDESLFQ--VMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L  L +       +I  +    LT ++ L +  ++L    P +  +++++  L L   + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 418 --------DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGL 469
                   D    ++ +EL    +     + LS        +  TF             +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

Query: 470 PL 471
            L
Sbjct: 271 KL 272

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 61/402 (15%), Positives = 117/402 (29%), Gaps = 48/402 (11%)

Query: 42  LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAF 101
             S       +     +      +L  LD  N+++     ++    L  L     + N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTSNNI 76

Query: 102 DSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL 161
            +++         L  L   +N+LT  +          L YL    N L           
Sbjct: 77  -TTLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLTKLDV---SQN 126

Query: 162 TNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221
             L  L    N   EI   +S  + L  L    N    K+   +   + L  +    N  
Sbjct: 127 PLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQL 280
                ++  Q   L  LN   NNI+ +     +    +   L  + N       I +  L
Sbjct: 183 TE---LDVSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 281 NKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
            +L   D S N L+  +      + L   +      ++                + +   
Sbjct: 233 TQLTYFDCSVNPLT-ELDVS-TLSKLTTLHCI----QTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPST 400
           K    ++ +       + L  LD     +  ++   +    ++  L L+   LT  +   
Sbjct: 287 KIKELDVTHN------TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD-- 334

Query: 401 FSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            S+   +KSL      +     +   ++  L     A     
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFSSVG--KIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 71/429 (16%), Positives = 123/429 (28%), Gaps = 57/429 (13%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           +E  T L      +N++  L    +  + +L  L   +N L  ++ V     L  L Y N
Sbjct: 60  IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLDV---TPLTKLTYLN 112

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
              N   + +         L  L+ + N LT EI          L  L    N       
Sbjct: 113 CDTNKL-TKLD--VSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKIT--K 163

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
                 T L  L    N   E+   +S+   L  L    NN++ K+   L     L  + 
Sbjct: 164 LDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVP 274
              N       ++   L  L   + S N ++ +     + +LSK   L     +      
Sbjct: 219 CSSNKLTE---IDVTPLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDLLEIDL 271

Query: 275 IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEK 334
               QL   Q                  NT L+      +     + S            
Sbjct: 272 THNTQLIYFQAEGCRKI----KELDVTHNTQLYLLDCQAAGITELDLSQN---------P 318

Query: 335 KIQETF----KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSY 390
           K+   +    + T  ++++       + L  L      +       +G +  +     + 
Sbjct: 319 KLVYLYLNNTELTELDVSH------NTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAE 370

Query: 391 NNLTGSIPSTFSNLKHIKSLDLSYNKLDG---KIPLQLVELNTLAVFNVAHNNLSGKIPE 447
                    T +N     ++        G    I      +   A   +   NLS   P 
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430

Query: 448 WTAQFATFN 456
            T  F + N
Sbjct: 431 VTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 60/388 (15%), Positives = 121/388 (31%), Gaps = 55/388 (14%)

Query: 74  NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSI--PTSFGNMNFLISLDLSNNQLTGEIPE 131
           N L+        D+ P   + +    AF+       S   +  L SLD  N+ +T ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 132 HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLY 191
                   L  L+ ++N++           TNL  L  D N    +   ++  + L  L 
Sbjct: 60  --IEKLTGLTKLICTSNNITTLDL---SQNTNLTYLACDSNKLTNL--DVTPLTKLTYLN 112

Query: 192 LSDNNLSGKIPRWLGNLSML----------------QHIILPENHFEGPIPMEFCQLDSL 235
              N L+         L+ L                Q   L  +  +    ++      L
Sbjct: 113 CDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQL 172

Query: 236 QILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
             L+ S N I+ +     +      ++L    NN      + L Q  +L  +D S+N L+
Sbjct: 173 TTLDCSFNKITEL----DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT 225

Query: 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
                    T L           +  T       +        +T      ++ +     
Sbjct: 226 EI--DVTPLTQLTYFDCS----VNPLTELDVSTLSKLTTLHCIQT-DLLEIDLTH----- 273

Query: 355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
             + L        + I ++   + + T++  L+     +T  +    S    +  L L+ 
Sbjct: 274 -NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNN 327

Query: 415 NKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            +L     L +     L   +  + ++ 
Sbjct: 328 TELTE---LDVSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 9e-12
 Identities = 60/345 (17%), Positives = 112/345 (32%), Gaps = 60/345 (17%)

Query: 102 DSSIPTSFGNMNF--LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF 159
             S    F + NF   ++             E LA     L  L   N+S+         
Sbjct: 8   TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLA----TLTSLDCHNSSITD--MTGIE 61

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
            LT L +L    N+   +   LS+ ++L  L    N L+  +   +  L+ L ++    N
Sbjct: 62  KLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTN 116

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                  ++  Q   L  LN + N ++ I      +S +     L  +  +    + +  
Sbjct: 117 KLT---KLDVSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKLDVTP 168

Query: 280 LNKLQLIDLS-NNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338
             +L  +D S N I    +        L+    + +  + ++                  
Sbjct: 169 QTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI---------------- 212

Query: 339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP 398
                               L+ LD S NKL  +I   +  LT++   + S N LT    
Sbjct: 213 -------------------QLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDV 250

Query: 399 STFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
           ST S L  +  +     ++D     QL+         +   +++ 
Sbjct: 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 20/245 (8%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           +   T+L       N L     L +     L  L     +L   I +        L YF 
Sbjct: 229 VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLT---HNTQLIYFQ 281

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
                    +     +   L  LD     +T E+          L YL L+N  L     
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNNTELTE--L 333

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI- 214
             + + T L+ L     H ++   S+ K  +L   + ++          L N S+   + 
Sbjct: 334 DVS-HNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 215 --ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGE 272
             +L +      I      +       I+  N+S      +    S++  ++       E
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFE 451

Query: 273 VPIQL 277
            P  +
Sbjct: 452 APQPI 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 73/397 (18%), Positives = 148/397 (37%), Gaps = 31/397 (7%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
              ++D SN NL  H+P  +    P  K  ++S N+           ++ L  L LS+N+
Sbjct: 32  LESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILES--LS 182
           +   +  H+ +   DLEYL +S+N L+ ++      + +LR L L  N F  +       
Sbjct: 88  IR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCP--MASLRHLDLSFNDFDVLPVCKEFG 143

Query: 183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD 242
             + L  L LS           + +L +   ++   ++       E  Q+ +  +L++  
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 243 NNIS-------GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG 295
           +  S          +    L LS  +L   +         +L +   L  + L +   + 
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 296 ----HIPPCLDNTTLHESYID----TSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI 347
                +        +    I     T   +  E ++ +        + ++      +K  
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 348 AYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407
            Y+    V + ++   LS +           + +    LN + N  T S+    S LK +
Sbjct: 324 LYS----VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 408 KSLDLSYNKLD--GKIPLQLVELNTLAVFNVAHNNLS 442
           ++L L  N L    K+ L    +++L   +V+ N+L+
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 77/447 (17%), Positives = 138/447 (30%), Gaps = 58/447 (12%)

Query: 19  FVRLSHLNLNG----EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN 74
              L  L L+          +   N  LE   + +N L  +         SL  LD+S N
Sbjct: 75  LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFN 131

Query: 75  NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN-FLISLDLSNNQLTGEIPEHL 133
           +       K    L  L +  +S   F         +++   I LDL +  + G   E L
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 134 AMGCVDLEYLLLSNNSLEGHLFPRNFNLT---NLRRLQLDGNHFREILESLS-------- 182
            +    + +L+   NSL       + N      L  ++L+  + + ++  LS        
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 183 ----------------------KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE-- 218
                                     +E L + +  ++ +I R     S      L    
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 219 ---NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
                F       +     + I  +S ++   I+        S   L    N F   V  
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 276 QLCQLNKLQLIDLSNN---ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
               L +LQ + L  N             + ++L    +  +S  S              
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 333 EKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNN 392
              +          +  +    +   +  LDL  N++   IP  + +L  +Q LN++ N 
Sbjct: 432 VLNLSSN------MLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQ 484

Query: 393 LTGSIP-STFSNLKHIKSLDLSYNKLD 418
           L  S+P   F  L  ++ + L  N  D
Sbjct: 485 LK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 8e-15
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 13/220 (5%)

Query: 9   NFFYHQHDLEFVRLSHLNLNG--EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
            F Y +  L+ + + H+           L     ++    L  +  P + ++      S 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG---NMNFLISLDLSNN 123
             L+ + N        +    L  L+   +  N    +         NM+ L +LD+S N
Sbjct: 356 TFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLN 413

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT-NLRRLQLDGNHFREILESLS 182
            L     +        +  L LS+N L G +F     L   ++ L L  N    I + ++
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKVLDLHNNRIMSIPKDVT 470

Query: 183 KCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPENHF 221
              +L+ L ++ N L   +P      L+ LQ+I L +N +
Sbjct: 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 7e-12
 Identities = 52/301 (17%), Positives = 109/301 (36%), Gaps = 16/301 (5%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNL 76
           L F+ LS           +   +       L++  + G     +    + +L  V + N 
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207

Query: 77  QGHIPVKIG-DFLPSLKYFNISMNAFDSSIPTSFGNMNF----LISLDLSNNQLTGEIPE 131
              + V +  + L  L+  NI +N  +     +F +       L+++ L + + T +   
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 132 HL--AMGCVDLEYLLLSNNSLEGHLFPRNFN-----LTNLRRLQLDGNHFREILESL-SK 183
            L        +EYL + N ++   +    F      L +L    +    F    E+L S 
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
            + +    LS ++          + S    +   +N F   +      L  LQ L +  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 244 NISGIYHHASILSLSK--DQLVLAHNNFEGEVPIQLCQL-NKLQLIDLSNNILSGHIPPC 300
            +   +  A +       + L ++ N+       + C     + +++LS+N+L+G +  C
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 301 L 301
           L
Sbjct: 448 L 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 48/294 (16%), Positives = 94/294 (31%), Gaps = 41/294 (13%)

Query: 15  HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNN---------SLPGLFLLPIHCHKS 65
           + L  ++LS++ LN E    L+   ++L     L N             + L      + 
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 66  LMLLDVSNNNLQGHIPVKIGDF----LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
           +  L++ N  +   I  +   +    L SL   ++    F  S    +     +    LS
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILES 180
            +     I            +L  + N        +    L  L+ L L  N  +   + 
Sbjct: 338 ISDTP-FIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
                ++  L   D +L+                 L                +S+ +LN+
Sbjct: 396 ALMTKNMSSLETLDVSLNS----------------LNS----HAYDRTCAWAESILVLNL 435

Query: 241 SDNNI-SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
           S N +   ++     L      L L +N     +P  +  L  LQ +++++N L
Sbjct: 436 SSNMLTGSVFRC---LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 5e-17
 Identities = 48/262 (18%), Positives = 84/262 (32%), Gaps = 25/262 (9%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLE-------NNTKLESNFLLNNSLPGLFLL 58
              +       ++ + L  L +        +          + L+   L N  + G    
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 59  PIH--CHKSLMLLDVSNNNLQG---HIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN 113
           P+       L +L++ N +       +        P LK  +I+     +          
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 114 FLISLDLSNNQLTGEIPEHLAM---GCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRL 167
            L +LDLS+N   GE     A+       L+ L L N    +  G           L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 168 QLDGNHFREILESL--SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI 225
            L  N  R+   +      S L  L LS   L  ++P+ L   + L  + L  N  +   
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-N 289

Query: 226 PMEFCQLDSLQILNISDNNISG 247
           P    +L  +  L++  N    
Sbjct: 290 P-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 56/293 (19%), Positives = 94/293 (32%), Gaps = 40/293 (13%)

Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRW---LGNLSMLQHIILP 217
           L      + D   F +I++SLS    L+ L +    +  +I      +  +S LQ + L 
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLS----LKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 218 ENHFEGPIPMEFCQLD--SLQILNISDNNISGIYHHASILSLSKDQ----LVLAHNNFEG 271
                G  P    +     L ILN+ + + +      + L          L +A  +   
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFY 331
               Q+     L  +DLS+N   G            E  + ++       +         
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELG------------ERGLISALCPLKFPTLQVLALRNA 211

Query: 332 KEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSY 390
             +                        L  LDLS+N L            +++ +LNLS+
Sbjct: 212 GMETPSGVCSALAAAR---------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 391 NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443
             L        + L     LDLSYN+LD   P    EL  +   ++  N    
Sbjct: 263 TGLKQVPKGLPAKL---SVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 14/223 (6%)

Query: 234 SLQILNISDNNISGIYHHASIL-SLSKDQLVLAHNNFEGEVP---IQLCQLNKLQLIDLS 289
           SL+ L    +  + +     I+ SLS  +L +        +    +++  ++ LQ + L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 290 NNILSGHIPP-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE-TFKFTTKNI 347
           N  ++G  PP  L+ T    + ++  +   +           + +  ++  +        
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 348 AYTYRGRVISYLSELDLSYNKLIGQIP----PQIGNLTRIQTLNLSYNNLT---GSIPST 400
               + RV   LS LDLS N  +G+              +Q L L    +    G   + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 401 FSNLKHIKSLDLSYNKLDGKIP-LQLVELNTLAVFNVAHNNLS 442
            +    ++ LDLS+N L            + L   N++   L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 359 LSELDLSYNKLIG--QIPPQIGNL--TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
           L+ L+L             ++       ++ L+++  +              + +LDLS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 415 NKLDGKIPL-------QLVELNTLAVFNVAHNNLSGKIPEWTAQF 452
           N   G+  L       +   L  LA+ N      SG      A  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 13/156 (8%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDLSNNQLTG 127
           LD+S+NNL           L +L    +S N   + I + +F  +  L  LDLS+N L  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 128 EIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLDGNHFREI----LES 180
            + E L      LE LLL NN    ++ + F    ++  L++L L  N         ++ 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQISRFPVELIKD 158

Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIIL 216
            +K   L  L LS N L       L  L       L
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFRE 176
           LDLS+N L+    E       +L  LLLS+N L   +    F  + NLR L L  NH   
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 177 I-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME----FCQ 231
           +     S   +LE L L +N++         +++ LQ + L +N      P+E      +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNK 161

Query: 232 LDSLQILNISDNNISGIYHHA--SILSLSKDQLVLAHNNF 269
           L  L +L++S N +  +       + +  K+ L L +N  
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 44/194 (22%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSL----PGLFL-LPIHCHKSLMLLD 70
               + LSH NL+     W     T L S  L +N L       F+ +P     +L  LD
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-----NLRYLD 94

Query: 71  VSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP 130
           +S+N+L   +   +   L +L+                         L L NN +   + 
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEV------------------------LLLYNNHIV-VVD 128

Query: 131 EHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLDGNHFREI----LESLSK 183
            +       L+ L LS N        L      L  L  L L  N  +++    L+ L  
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 184 CSSLEGLYLSDNNL 197
                GLYL +N L
Sbjct: 189 -WVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 61/214 (28%)

Query: 234 SLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQ-LCQLNKLQLIDLSNN 291
              +L++S NN+S +    +   L+    L+L+HN+    +  +    +  L+ +DLS+N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 292 ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
            L   +                                          F           
Sbjct: 99  HLH-TLDE--------------------------------------FLFSDLQA------ 113

Query: 352 RGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSN---LKHI 407
                  L  L L  N  I  +      ++ ++Q L LS N ++        +   L  +
Sbjct: 114 -------LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165

Query: 408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVA-HNN 440
             LDLS NKL       L +L       +  HNN
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 357 SYLSELDLSYNKLIGQIPPQI--GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLS 413
           SY + LDLS+N  + ++  +     LT + +L LS+N+L   I S  F  + +++ LDLS
Sbjct: 39  SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            N L         +L  L V  + +N++ 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 162 TNLRRLQLDGNHFREIL--ESLSKCSSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPE 218
           +    L L  N+   +    + ++ ++L  L LS N+L+  I       +  L+++ L  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 219 NHFEGPIPME-FCQLDSLQILNISDNNISGIYHHA-------SILSLSKDQL-VLAHNNF 269
           NH    +    F  L +L++L + +N+I  +  +A         L LS++Q+        
Sbjct: 98  NHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 270 EGEVPIQLCQLNKLQLIDLSNNILSGHIPP 299
           +        +L KL L+DLS+N L   +P 
Sbjct: 157 KD-----GNKLPKLMLLDLSSNKLK-KLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 40/234 (17%), Positives = 68/234 (29%), Gaps = 82/234 (35%)

Query: 185 SSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
           S    L LS NNLS     W    L+ L  ++L  NH        F  + +L+ L++S N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
           ++  +                    F          L  L+++ L NN +   +      
Sbjct: 99  HLHTLDEFL----------------FSD--------LQALEVLLLYNNHIV-VVDR---- 129

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
                                               F+   +             L +L 
Sbjct: 130 ----------------------------------NAFEDMAQ-------------LQKLY 142

Query: 364 LSYNKLIGQIPPQI----GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
           LS N++  + P ++      L ++  L+LS N L     +    L       L 
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 5e-16
 Identities = 57/288 (19%), Positives = 110/288 (38%), Gaps = 21/288 (7%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
            + + +    +N+   +       L  +   +       ++I      +N LI L+L +N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN 73

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
           Q+T ++          +  L LS N L+         L +++ L L      ++   L+ 
Sbjct: 74  QIT-DLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDV-TPLAG 127

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
            S+L+ LYL  N ++   P  L  L+ LQ++ +         P+    L  L  L   DN
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDN 183

Query: 244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
            IS I   AS+ +L +  + L +N      P+     + L ++ L+N  ++       +N
Sbjct: 184 KISDISPLASLPNLIE--VHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
             +       S    +  +  D G   Y    +         N++YT+
Sbjct: 240 LVVPNVVKGPSGAPIAPATISDNG--TYASPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 47/307 (15%), Positives = 86/307 (28%), Gaps = 70/307 (22%)

Query: 111 NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170
            +   I +    + +T  + +        +  L      +          L NL  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 171 GNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC 230
            N   ++   L   + +  L LS N L       +  L  ++ + L         P    
Sbjct: 72  DNQITDL-APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290
            L +LQ+L +  N I+ I                            L  L  LQ + + N
Sbjct: 127 GLSNLQVLYLDLNQITNI--------------------------SPLAGLTNLQYLSIGN 160

Query: 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
             +S  + P  + + L     D +                 K   I              
Sbjct: 161 AQVS-DLTPLANLSKLTTLKADDN-----------------KISDISPLASLPN------ 196

Query: 351 YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                   L E+ L  N+ I  + P + N + +  + L+   +T       +NL     +
Sbjct: 197 --------LIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

Query: 411 DLSYNKL 417
                  
Sbjct: 247 KGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 35/283 (12%), Positives = 90/283 (31%), Gaps = 69/283 (24%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
            L N  ++    ++  +   + +    +  L      ++      +  L+ L  + L +N
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                 P     L  +  L +S N +  +                            +  
Sbjct: 74  QITDLAP--LKNLTKITELELSGNPLKNV--------------------------SAIAG 105

Query: 280 LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET 339
           L  ++ +DL++  ++  + P    + L   Y+D                      +I   
Sbjct: 106 LQSIKTLDLTSTQITD-VTPLAGLSNLQVLYLD--------------------LNQITNI 144

Query: 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS 399
                           ++ L  L +   + +  + P + NL+++ TL    N ++  I  
Sbjct: 145 SPLAG-----------LTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKIS-DISP 190

Query: 400 TFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
             ++L ++  + L  N++    PL     + L +  + +  ++
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 13/184 (7%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           L+N TK+    L  N L  +    I   +S+  LD+++  +    P+     L +L+   
Sbjct: 81  LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLY 135

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           + +N   ++I      +  L  L + N Q++   P         L  L   +N +     
Sbjct: 136 LDLNQI-TNIS-PLAGLTNLQYLSIGNAQVSDLTPLA---NLSKLTTLKADDNKISD--I 188

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
               +L NL  + L  N   ++   L+  S+L  + L++  ++ +   +  NL +   + 
Sbjct: 189 SPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

Query: 216 LPEN 219
            P  
Sbjct: 248 GPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 44/238 (18%)

Query: 205 LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVL 264
              L+    I   +++    +      LD +  L+     ++ I     + +L    L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIG--LEL 70

Query: 265 AHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFV 324
             N      P  L  L K+  ++LS N L  ++       ++    +             
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLT------------ 115

Query: 325 DEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQ 384
                     +I +                 +S L  L L  N+ I  I P +  LT +Q
Sbjct: 116 --------STQITDVTPLAG-----------LSNLQVLYLDLNQ-ITNISP-LAGLTNLQ 154

Query: 385 TLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            L++    ++   P   +NL  + +L    NK+    PL    L  L   ++ +N +S
Sbjct: 155 YLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQIS 208

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 69/421 (16%), Positives = 133/421 (31%), Gaps = 78/421 (18%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFD----SSIPTSFGNMNFLISLD 119
             +  LD+    L      ++   L   +   +            I ++      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 120 LSNNQLTGE----IPEHLAMGCVDLEYLLLSNNSL--EG--HLFPRNFNLTNLRRLQLDG 171
           L +N+L       + + L      ++ L L N  L   G   L      L  L+ L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 172 NHF-----REILESL-SKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHF 221
           N       + + E L      LE L L   +LS      +   L      + + +  N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 222 EGPIPMEFCQL-----DSLQILNISDNNIS--GIYHHASILSLSKD--QLVLAHNNFEGE 272
                   CQ        L+ L +    ++         I++      +L L  N     
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 273 VPIQLCQ-----LNKLQLIDLSNNILS----GHIPPCL-DNTTLHESYIDTSSPESSETS 322
              +LC       ++L+ + +    ++    G +   L    +L E  +       +   
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL-------AGNE 295

Query: 323 FVDEGFAFYKEKKIQETFKFTTKNI-------------AYTYRGRVISY---LSELDLSY 366
             DEG      + + ET       +               ++   V++    L EL +S 
Sbjct: 296 LGDEG-----ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 367 NKLIGQIPPQIG-----NLTRIQTLNLSYNNLT----GSIPSTFSNLKHIKSLDLSYNKL 417
           N+L      ++        + ++ L L+  +++     S+ +T      ++ LDLS N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 418 D 418
            
Sbjct: 411 G 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 58/372 (15%), Positives = 106/372 (28%), Gaps = 94/372 (25%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
           + SLD+   +L+      L       + + L +                     L     
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-------------------GLTEARC 45

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
           ++I  +L    +L  L L  N L       +     LQ                      
Sbjct: 46  KDISSALRVNPALAELNLRSNELGDVGVHCVL--QGLQT-----------------PSCK 86

Query: 235 LQILNISDNNIS--GIYHHASILSLSKD--QLVLAHNNFEGEVPIQLCQL-----NKLQL 285
           +Q L++ +  ++  G    +S L       +L L+ N         LC+       +L+ 
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 286 IDLSNNILS----GHIPPCLD-NTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
           + L    LS      +   L       E  +       S     + G      + + +  
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTV-------SNNDINEAGV-----RVLCQGL 194

Query: 341 KFTTKNIAY--------TYRG--------RVISYLSELDLSYNKLIGQ-----IPPQIGN 379
           K +   +          T              + L EL L  NKL         P  +  
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 380 LTRIQTLNLSYNNLT----GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL-----NT 430
            +R++TL +    +T    G +       + +K L L+ N+L  +    L E        
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 431 LAVFNVAHNNLS 442
           L    V   + +
Sbjct: 315 LESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 26/189 (13%)

Query: 36  LENNTKLE-----SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFL-- 88
           + +   L      SN L +  +  L    +H    L  L +    +       +   L  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 89  -PSLKYFNISMNAFDSS----IPTSFGNMNF-LISLDLSNNQLTGEIPEHLA---MGCVD 139
             SLK  +++ N         +  +       L SL + +   T     H +        
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 140 LEYLLLSNNSLEG----HLFPR-NFNLTNLRRLQLDGNHFRE-----ILESLSKCSSLEG 189
           L  L +SNN LE      L        + LR L L      +     +  +L    SL  
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 190 LYLSDNNLS 198
           L LS+N L 
Sbjct: 403 LDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 45/293 (15%), Positives = 84/293 (28%), Gaps = 61/293 (20%)

Query: 185 SSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHF--EG--PIPMEFCQLDSLQILN 239
             ++ L +    LS       L  L   Q + L +          I        +L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS----G 295
           +  N +        +  + +    L   +         C++ KL    L N  L+    G
Sbjct: 63  LRSNELGD----VGVHCVLQ---GLQTPS---------CKIQKL---SLQNCCLTGAGCG 103

Query: 296 HIPPCL-DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG- 353
            +   L    TL E ++       S+    D G     E  +    +     + Y     
Sbjct: 104 VLSSTLRTLPTLQELHL-------SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156

Query: 354 ----------RVISYLSELDLSYNKLIGQIPPQIG-----NLTRIQTLNLSYNNLT---- 394
                     R      EL +S N +       +      +  +++ L L    +T    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 395 GSIPSTFSNLKHIKSLDLSYNKLDGK-----IPLQLVELNTLAVFNVAHNNLS 442
             +    ++   ++ L L  NKL         P  L   + L    +    ++
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 1e-15
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 16/216 (7%)

Query: 88  LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN 147
                  N+   +   ++      +N +  +  +N+ +   + + +     ++  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 74

Query: 148 NSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGN 207
           N L   + P   NL NL  L LD N  +++  SL     L+ L L  N +S  I   L +
Sbjct: 75  NKLT-DIKPLT-NLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLVH 129

Query: 208 LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHN 267
           L  L+ + L  N           +L  L  L++ DN IS I   A +  L    L L+ N
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQN--LYLSKN 185

Query: 268 NFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303
           +        L  L  L +++L +            N
Sbjct: 186 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 219

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 67/428 (15%), Positives = 133/428 (31%), Gaps = 46/428 (10%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
            +   +   + L   S+     +  +   S+  +  +N+++                   
Sbjct: 17  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDI------------------- 55

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
                   S+      +  +  L L+ N+LT +I + L     +L +L L  N ++    
Sbjct: 56  -------KSV-QGIQYLPNVTKLFLNGNKLT-DI-KPLT-NLKNLGWLFLDENKIKD--L 102

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
               +L  L+ L L+ N   +I   L     LE LYL +N ++      L  L+ L  + 
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 159

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
           L +N     +P     L  LQ L +S N+IS +   A + +L    L L       +   
Sbjct: 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDV--LELFSQECLNKPIN 215

Query: 276 QLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
               L     +  ++  L        D      +        ++E SF      +     
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF----IFYQPVTI 271

Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI-GQIPPQIGNLTRIQTLNLSYNNLT 394
            +   +F  +          +SY  +  +   K+  G         T+   +   +    
Sbjct: 272 GKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEK 331

Query: 395 GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFAT 454
                   N  ++   D +   +      +     T  V  +  N    K+P        
Sbjct: 332 NGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQ 391

Query: 455 FNESSYEG 462
              +S+  
Sbjct: 392 GTLASHRC 399

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 3e-13
 Identities = 55/338 (16%), Positives = 109/338 (32%), Gaps = 27/338 (7%)

Query: 18  EFVRLSHLNLNGEFPNWL--LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
           E   +  +  N      +  ++    +   FL  N L  +   P+   K+L  L +  N 
Sbjct: 41  ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK 98

Query: 76  LQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHL 133
           ++      +     L  LK  ++  N   S I     ++  L SL L NN++T      L
Sbjct: 99  IK-----DLSSLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKIT--DITVL 149

Query: 134 AMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLS 193
           +     L+ L L +N +          LT L+ L L  NH  ++  +L+   +L+ L L 
Sbjct: 150 S-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELF 205

Query: 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS 253
                 K      NL +   +   +     P  +        +  N+  +         S
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPEFTNEV-S 262

Query: 254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDT 313
            +      +  A   F G V   L ++       +S ++    I   ++  T   +    
Sbjct: 263 FIFYQPVTIGKAKARFHGRVTQPLKEVYT-----VSYDVDGTVIKTKVEAGTRITAPKPP 317

Query: 314 SSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351
           +        +  E    ++     +        +   +
Sbjct: 318 TKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVF 355

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 9e-12
 Identities = 44/324 (13%), Positives = 96/324 (29%), Gaps = 47/324 (14%)

Query: 140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSG 199
           +   +  +  ++  +FP +       +  L      +   + ++ +S++ +  +++++  
Sbjct: 1   MGETITVSTPIK-QIFPDD-AFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIK- 56

Query: 200 KIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK 259
            +   +  L  +  + L  N      P     L +L  L + +N I  +     +  L  
Sbjct: 57  SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113

Query: 260 DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESS 319
             L L HN       +    L +L+ + L NN ++  I      T L    ++ +     
Sbjct: 114 --LSLEHNGISDINGLV--HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDN----- 163

Query: 320 ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGN 379
                       +   I      T               L  L LS N  I  +   +  
Sbjct: 164 ------------QISDIVPLAGLTK--------------LQNLYLSKNH-ISDLRA-LAG 195

Query: 380 LTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN 439
           L  +  L L          +  SNL    ++  +   L    P  + +       NV  +
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWH 253

Query: 440 NLSGKIPEWTAQFATFNESSYEGN 463
                       +        +  
Sbjct: 254 LPEFTNEVSFIFYQPVTIGKAKAR 277

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 10/210 (4%)

Query: 89  PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN 148
            S K  ++S N        SF +   L  LDLS  ++   I +        L  L+L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 149 SLEGHLFPRNF-NLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNNL-SGKIPRWL 205
            ++  L    F  L++L++L     +   +         +L+ L ++ N + S K+P + 
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 206 GNLSMLQHIILPENHFEGPIPMEFCQLDSLQI----LNISDNNISGIYHHASILSLSKDQ 261
            NL+ L+H+ L  N  +     +   L  + +    L++S N ++ I    +   +   +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKE 204

Query: 262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
           L L  N  +        +L  LQ I L  N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 9/185 (4%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
            L +LD+S   +Q  I       L  L    ++ N   S    +F  ++ L  L      
Sbjct: 53  ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI-LESLS 182
           L   +          L+ L +++N ++    P  F NLTNL  L L  N  + I    L 
Sbjct: 112 LA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 183 KCSSLEG----LYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238
               +      L LS N ++  I         L+ + L  N  +      F +L SLQ +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 239 NISDN 243
            +  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 60/295 (20%), Positives = 97/295 (32%), Gaps = 90/295 (30%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNF 159
            ++P S        +LDLS N L   +  +      +L+ L LS     ++E   +    
Sbjct: 24  DNLPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---Q 73

Query: 160 NLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218
           +L++L  L L GN  + + L + S  SSL+ L   + NL+                 L  
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA----------------SLEN 117

Query: 219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC 278
                        L +L+ LN++ N I                       F         
Sbjct: 118 FPIGH--------LKTLKELNVAHNLIQSF---------------KLPEYFSN------- 147

Query: 279 QLNKLQLIDLSNNILSGHIPP-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQ 337
            L  L+ +DLS+N +   I    L           +     +  +F+  G AF + +   
Sbjct: 148 -LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIR--- 201

Query: 338 ETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYN 391
                                L EL L  N+L   +P  I   LT +Q + L  N
Sbjct: 202 ---------------------LKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 54/287 (18%), Positives = 83/287 (28%), Gaps = 89/287 (31%)

Query: 138 VDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDN 195
              + L LS N L  HL   +F +   L+ L L     + I +      S L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 196 NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASIL 255
            +                  L    F G        L SLQ L   + N++         
Sbjct: 87  PIQS----------------LALGAFSG--------LSSLQKLVAVETNLAS-------- 114

Query: 256 SLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN-ILSGHIPPCLDNTT------LHE 308
                   L +             L  L+ +++++N I S  +P    N T      L  
Sbjct: 115 --------LENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 309 SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNK 368
           + I  S   +                ++                         LDLS N 
Sbjct: 159 NKI-QSIYCT----------DLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 369 LIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
            +  I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 189 -MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 361 ELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKL- 417
            LDLS+N  +  +      +   +Q L+LS   +  +I    + +L H+ +L L+ N + 
Sbjct: 32  NLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 418 --DGKIPLQLVELNTL 431
                    L  L  L
Sbjct: 90  SLALGAFSGLSSLQKL 105

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSY 414
             L  LDLS  + I  I      +L+ + TL L+ N +  S+    FS L  ++ L    
Sbjct: 52  PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109

Query: 415 NKL 417
             L
Sbjct: 110 TNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIK----SLDL 412
           L EL++++N +     P+   NLT ++ L+LS N +  SI       L  +     SLDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184

Query: 413 SYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           S N ++  I     +   L    +  N L 
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/236 (16%), Positives = 62/236 (26%), Gaps = 105/236 (44%)

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
            S + L LS N L   +                           F     LQ+L++S   
Sbjct: 28  FSTKNLDLSFNPLR-HLG-----------------------SYSFFSFPELQVLDLSRCE 63

Query: 245 ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNT 304
           I  I                     E      L  L+ L    L+ N +   +       
Sbjct: 64  IQTI---------------------EDGAYQSLSHLSTL---ILTGNPIQ-SLAL----- 93

Query: 305 TLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDL 364
                                              F   +              L +L  
Sbjct: 94  ---------------------------------GAFSGLSS-------------LQKLVA 107

Query: 365 SYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS--TFSNLKHIKSLDLSYNKL 417
                +  +     G+L  ++ LN+++N +  S      FSNL +++ LDLS NK+
Sbjct: 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI 161

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 9e-14
 Identities = 51/306 (16%), Positives = 91/306 (29%), Gaps = 69/306 (22%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
                 +++T EIP  L     +   L      L   +    F    +L ++++  N   
Sbjct: 13  VFLCQESKVT-EIPSDLP---RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 176 EILES--LSKCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
           E++E+   S    L  + +   N    I      NL  LQ++++     +    +     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 233 DSLQILNISDNN-ISGIYHHASI-LSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290
               +L+I DN  I  I  ++ + LS     L L  N  +             +L    N
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187

Query: 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
           N L            L                       F+                   
Sbjct: 188 NNL----------EELPND-------------------VFHG------------------ 200

Query: 351 YRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409
                 S    LD+S  + I  +P     NL +++  +    NL   +P+    L  +  
Sbjct: 201 -----ASGPVILDISRTR-IHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALME 250

Query: 410 LDLSYN 415
             L+Y 
Sbjct: 251 ASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 6e-13
 Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 12/236 (5%)

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
           CH S  +     + +   IP    D   +       +         +F     L  +++S
Sbjct: 7   CHCSNRVFLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 62

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE- 179
            N +   I   +      L  + +   +   ++ P  F NL NL+ L +     + + + 
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 180 SLSKCSSLEGLYLSDNNLSGKIP-RWLGNLSM-LQHIILPENHFEGPIPMEFCQLDSLQI 237
                     L + DN     I       LS     + L +N  +  I         L  
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDE 181

Query: 238 LNISDNN-ISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291
           LN+SDNN +  +  +      S    L ++           L  L KL+     N 
Sbjct: 182 LNLSDNNNLEEL-PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 49/220 (22%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLN-NSL----PGLFLLPIH 61
               F    DLE + +S  ++       +  N  KL    +   N+L    P  F     
Sbjct: 46  QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF----Q 101

Query: 62  CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNF-LISLD 119
              +L  L +SN  ++ H+P             +I  N    +I   SF  ++F  + L 
Sbjct: 102 NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 120 LSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI- 177
           L+ N +  EI      G    E  L  NN+LE  L    F   +    L +       + 
Sbjct: 161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLP 218

Query: 178 LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILP 217
              L     L        NL  K+P  L  L  L    L 
Sbjct: 219 SYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%)

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
           + R      +   EI   L    +   L      L             L+ I + +N   
Sbjct: 10  SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 223 GPIPME-FCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN 281
             I  + F  L  L  + I   N        ++L ++ +        F+         L 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKAN--------NLLYINPEA-------FQN--------LP 104

Query: 282 KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341
            LQ + +SN  +  H+P      +L +  +D     +  T  ++             +F 
Sbjct: 105 NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT--IERN-----------SFV 150

Query: 342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-T 400
             +                 L L+ N  I +I     N T++  LNLS NN    +P+  
Sbjct: 151 GLSFE------------SVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 401 FSNLKHIKSLDLSYNKL 417
           F        LD+S  ++
Sbjct: 198 FHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L ++++S N ++  I   +  NL ++  + +   N    I    F NL +++ L +S   
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 417 LDGKIP-LQLVELNTLAVFNVAHNNLSGKIPE 447
           +   +P +  +      + ++  N     I  
Sbjct: 116 I-KHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK 420
                 +K+  +IP  +        L      L       FS    ++ +++S N +   
Sbjct: 13  VFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 421 IPLQ----LVELNTLAVFNVAHNNLS 442
           I       L +L+ + +     NNL 
Sbjct: 70  IEADVFSNLPKLHEIRIEK--ANNLL 93

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLS-YN 415
             EL     K +  I          ++ + +S N++   I +  FSNL  +  + +   N
Sbjct: 32  AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLS 442
            L    P     L  L    +++  + 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK 117

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTS-FGNMNFLISLDLSNNQLTG 127
           LD+ +N L   +P K    L  L+   ++ N    ++P   F  +  L +L +++N+L  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESL-SKCS 185
            +P  +    V+L  L L  N L+  L PR F +LT L  L L  N  + + + +  K +
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
           SL+ L L +N L          L+ L+ + L  N  +      F  L+ L++L + +N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 40  TKLESNFLLNNSL----PGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           TKL   +L +N L     G+F       K+L  L V++N LQ  +P+ + D L +L    
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 96  ISMNAFDSSIPTS-FGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN---SLE 151
           +  N    S+P   F ++  L  L L  N+L   +P+ +      L+ L L NN    + 
Sbjct: 116 LDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173

Query: 152 GHLFPRNFNLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDN 195
              F     LT L+ L+LD N  + +   +      L+ L L +N
Sbjct: 174 EGAFD---KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 19/188 (10%)

Query: 90  SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN- 148
             K  ++  N   S    +F  +  L  L L++N+L   +P  +     +LE L +++N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 149 --SLEGHLFPRNFNLTNLRRLQLDGNHFREILESLS-----KCSSLEGLYLSDNNLSGKI 201
             +L   +F     L NL  L+LD N     L+SL        + L  L L  N L   +
Sbjct: 97  LQALPIGVFD---QLVNLAELRLDRNQ----LKSLPPRVFDSLTKLTYLSLGYNELQ-SL 148

Query: 202 PRWL-GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKD 260
           P+ +   L+ L+ + L  N  +      F +L  L+ L + +N +  +   A   SL K 
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA-FDSLEKL 207

Query: 261 QLVLAHNN 268
           +++    N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 41/194 (21%), Positives = 62/194 (31%), Gaps = 58/194 (29%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFN-L 161
           S+IP           LDL +N+L+  +P         L  L L++N L+  L    F  L
Sbjct: 33  SNIPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKEL 84

Query: 162 TNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
            NL  L +  N  + + +    +  +L  L L  N L                  LP   
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS----------------LPPRV 128

Query: 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL 280
           F+         L  L  L++  N +                  L    F+         L
Sbjct: 129 FDS--------LTKLTYLSLGYNELQ----------------SLPKGVFDK--------L 156

Query: 281 NKLQLIDLSNNILS 294
             L+ + L NN L 
Sbjct: 157 TSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L  L ++ NKL   +P  +   L  +  L L  N L  S+P   F +L  +  L L YN+
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 417 LDGKIPL----QLVELNTLAVFN 435
           L   +P     +L  L  L ++N
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYN 166

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 361 ELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKL- 417
           +LDL  NK +  +P +    LT+++ L L+ N L  ++P+  F  LK++++L ++ NKL 
Sbjct: 41  KLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 418 --DGKIPLQLVELNTL 431
                +  QLV L  L
Sbjct: 99  ALPIGVFDQLVNLAEL 114

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L+EL L  N+ +  +PP++  +LT++  L+L YN L  S+P   F  L  +K L L  N+
Sbjct: 111 LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ 168

Query: 417 L 417
           L
Sbjct: 169 L 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L+ L L YN+L   +P  +   LT ++ L L  N L   +P   F  L  +K+L L  N+
Sbjct: 135 LTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 417 L 417
           L
Sbjct: 193 L 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L EL L  N+L  ++P      LT ++TL L  N L       F +L+ +K L L  N  
Sbjct: 159 LKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217

Query: 418 D 418
           D
Sbjct: 218 D 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL- 417
            + +D S  KL   IP  I      + L+L  N L+      F  L  ++ L L+ NKL 
Sbjct: 18  KNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 418 --DGKIPLQLVELNTL 431
                I  +L  L TL
Sbjct: 75  TLPAGIFKELKNLETL 90

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 32/185 (17%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
            SL  + ++N N+     +   ++  ++K   I+     +  P     ++ L  L +   
Sbjct: 44  NSLTYITLANINVTDLTGI---EYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
            +T +   +L+ G   L  L +S+++ +  +  +   L  +  + L  N     +  L  
Sbjct: 99  DVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
              L+ L +  + +         +   ++                      L  L     
Sbjct: 158 LPELKSLNIQFDGVH--------DYRGIED------------------FPKLNQLYAFSQ 191

Query: 244 NISGI 248
            I G 
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 7e-12
 Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 12/182 (6%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
            ++  L  +         +      L Y+ L+N ++   L        N++ L ++  H 
Sbjct: 25  YLNGLLGQSSTANITEAQMN----SLTYITLANINVT-DLTGIE-YAHNIKDLTINNIHA 78

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
                 +S  S+LE L +   +++      L  L+ L  + +  +  +  I  +   L  
Sbjct: 79  TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 235 LQILNISDNN-ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
           +  +++S N  I+ I    ++  L    L +  +       I+     KL  +   +  +
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKS--LNIQFDGVHDYRGIE--DFPKLNQLYAFSQTI 193

Query: 294 SG 295
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L  L +    +     P +  LT +  L++S++    SI +  + L  + S+DLSYN   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 419 GKIPLQLVELNTLAVFNVAHNNLS 442
             I   L  L  L   N+  + + 
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           + +L ++         P I  L+ ++ L +   ++T       S L  +  LD+S++  D
Sbjct: 68  IKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKI 445
             I  ++  L  +   ++++N     I
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 49/199 (24%)

Query: 226 PMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQLNKLQ 284
            +   Q++SL  + +++ N++ +     I        L + + +     PI    L+ L+
Sbjct: 37  NITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNPIS--GLSNLE 91

Query: 285 LIDLSNNILSGHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338
            + +    ++    P L   T      +  S  D S      T                 
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT----------------- 134

Query: 339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP 398
                            +  ++ +DLSYN  I  I P +  L  +++LN+ ++ +     
Sbjct: 135 -----------------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

Query: 399 STFSNLKHIKSLDLSYNKL 417
               +   +  L      +
Sbjct: 177 --IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 27/140 (19%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
            + +L  + L   +  ++   +    +++ L +++ + +   P  +  LS L+ + +   
Sbjct: 42  QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                       L SL +L+IS +                             +  ++  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDS------------------------ILTKINT 134

Query: 280 LNKLQLIDLSNNILSGHIPP 299
           L K+  IDLS N     I P
Sbjct: 135 LPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
           +   + LE   ++   +    +  +    SL LLD+S++     I  KI   LP +   +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP-EHLAMGCVDLEYLLLSNN 148
           +S N   + I      +  L SL++  + +      E        L  L   + 
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 24/237 (10%), Positives = 72/237 (30%), Gaps = 63/237 (26%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
                    L  +    I  + ++ +SL  + L++ N++        +L+ +++      
Sbjct: 21  TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVT--------DLTGIEY------ 64

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                         +++ L I++ + +     + + +L +  L +   +   +    L  
Sbjct: 65  ------------AHNIKDLTINNIHATNYNPISGLSNLER--LRIMGKDVTSDKIPNLSG 110

Query: 280 LNKLQLIDLSNNILSGHIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338
           L  L L+D+S++     I   ++    ++   +  +                     I  
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG----------------AITDIMP 154

Query: 339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
                               L  L++ ++  +      I +  ++  L      + G
Sbjct: 155 LKTLPE--------------LKSLNIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L+ + L+    +  +   I     I+ L ++  + T    +  S L +++ L +    + 
Sbjct: 46  LTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPE 447
                 L  L +L + +++H+     I  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 52/264 (19%), Positives = 101/264 (38%), Gaps = 18/264 (6%)

Query: 88  LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN 147
                  N+   +   ++      +N +  +  +N+ +   + + +     ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 77

Query: 148 NSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGN 207
           N L   + P   NL NL  L LD N  +++  SL     L+ L L  N +S  I   L +
Sbjct: 78  NKLT-DIKPLA-NLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLVH 132

Query: 208 LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHN 267
           L  L+ + L  N       +   +L  L  L++ DN IS I   A +  L    L L+ N
Sbjct: 133 LPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVPLAGLTKLQN--LYLSKN 188

Query: 268 NFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEG 327
           +        L  L  L +++L +            N  +  +  +T     +     D+G
Sbjct: 189 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 246

Query: 328 FAFYKEKKIQETFKFTTKNIAYTY 351
              Y++  ++      T  +++ +
Sbjct: 247 --DYEKPNVKWHLPEFTNEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 49/258 (18%), Positives = 92/258 (35%), Gaps = 41/258 (15%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95
            +   +   + L   S+     +  +   S+  +  +N++++    +    +LP++    
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGI---QYLPNVTKLF 74

Query: 96  ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           ++ N   + I     N+  L  L L  N++             DL  L            
Sbjct: 75  LNGNKL-TDI-KPLANLKNLGWLFLDENKVK------------DLSSL------------ 108

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
               +L  L+ L L+ N   +I   L     LE LYL +N ++      L  L+ L  + 
Sbjct: 109 ---KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 162

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
           L +N     +P     L  LQ L +S N+IS +   A + +L    L L       +   
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDV--LELFSQECLNKPIN 218

Query: 276 QLCQLNKLQLIDLSNNIL 293
               L     +  ++  L
Sbjct: 219 HQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 19/213 (8%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDF--LPSLKY 93
           ++    +   FL  N L  +   P+   K+L  L +  N ++      +     L  LK 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-----DLSSLKDLKKLKS 116

Query: 94  FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH 153
            ++  N   S I     ++  L SL L NN++T      L+     L+ L L +N +   
Sbjct: 117 LSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITD--ITVLS-RLTKLDTLSLEDNQIS-D 170

Query: 154 LFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
           + P    LT L+ L L  NH  ++  +L+   +L+ L L       K      NL +   
Sbjct: 171 IVPLA-GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246
           +   +     P  +        +  N+  +   
Sbjct: 229 VKNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
                 +  L      +   + ++ +S++ +  +++++   +   +  L  +  + L  N
Sbjct: 22  AFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 78

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                 P     L +L  L + +N +  +     +  L    L L HN       +    
Sbjct: 79  KLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKS--LSLEHNGISDINGLV--H 132

Query: 280 LNKLQLIDLSNNILS 294
           L +L+ + L NN ++
Sbjct: 133 LPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 42/212 (19%)

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290
                   N+   +++       + S+ +  ++  +++ +    IQ   L  +  + L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQ--IIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
           N L+  I P  +   L   ++D                    E K+++            
Sbjct: 78  NKLT-DIKPLANLKNLGWLFLD--------------------ENKVKDLSSLKD------ 110

Query: 351 YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                +  L  L L +N  I  I   + +L ++++L L  N +T    +  S L  + +L
Sbjct: 111 -----LKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL 161

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
            L  N++   +PL    L  L    ++ N++S
Sbjct: 162 SLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 191

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 5e-13
 Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 14/191 (7%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162
             +P           L LS N L         M    L  L L    L       +  L 
Sbjct: 27  PDLPKD------TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLP 77

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPENHF 221
            L  L L  N  + +        +L  L +S N L+  +P   L  L  LQ + L  N  
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQL 280
           +   P        L+ L++++NN++ +     +  L   D L+L  N+    +P      
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194

Query: 281 NKLQLIDLSNN 291
           + L    L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 39/193 (20%), Positives = 57/193 (29%), Gaps = 33/193 (17%)

Query: 108 SFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRR 166
               +   + ++     LT  +P  L     D   L LS N L            T L +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLY-TFSLATLMPYTRLTQ 59

Query: 167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP 226
           L LD     + L+       L  L LS N L   +P     L  L  + +  N       
Sbjct: 60  LNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 227 MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLI 286
                L  LQ L +  N +                  L                 KL+ +
Sbjct: 118 GALRGLGELQELYLKGNELK----------------TLPPGLLTP--------TPKLEKL 153

Query: 287 DLSNNILSGHIPP 299
            L+NN L+  +P 
Sbjct: 154 SLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           L++L+L   +L        G L  + TL+LS+N L  S+P     L  +  LD+S+N+L 
Sbjct: 57  LTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

Query: 419 GKIPL----QLVELNTLAVFNVAHNNLS 442
             +PL     L EL  L    +  N L 
Sbjct: 114 -SLPLGALRGLGELQEL---YLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L+ LD+S+N+ +  +P      L  +Q L L  N L  ++P    +    ++ L L+ N 
Sbjct: 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 417 L 417
           L
Sbjct: 160 L 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L EL L  N+L   +PP +     +++ L+L+ NNLT  +P+   + L+++ +L L  N 
Sbjct: 126 LQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

Query: 417 L 417
           L
Sbjct: 184 L 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
             E++     L   +PP +        L+LS N L     +T      +  L+L   +L 
Sbjct: 12  HLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 419 GKIPL--QLVELNTLAVFNVAHNNLS 442
            K+ +   L  L TL   +++HN L 
Sbjct: 68  TKLQVDGTLPVLGTL---DLSHNQLQ 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 9e-13
 Identities = 80/483 (16%), Positives = 145/483 (30%), Gaps = 130/483 (26%)

Query: 12  YHQHDLEFVRLSHLNLNGEFPNWLLEN----NTKLESNFLLNNSLPGLFLLPIHCHKSLM 67
            +  +     L  L    + PNW   +    N KL  + +    L  L     + +  L+
Sbjct: 192 CNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLV 249

Query: 68  LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN-NQLT 126
           LL+V N                         NAF+ S          L +      + L+
Sbjct: 250 LLNVQNAKA---------------------WNAFNLSCKI------LLTTRFKQVTDFLS 282

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL--TNLRRLQLDGNHFREILESLSKC 184
                H+++        L  +      L  +  +    +L R  L  N  R         
Sbjct: 283 AATTTHISL--DHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNPRR--------- 329

Query: 185 SSLEGLYLSDNNLSGKIPRWLG-NLSMLQHIILPENHFEGPIPMEFCQL-DSLQILNISD 242
            S+    + D         W   N   L  II  E+      P E+ ++ D L +     
Sbjct: 330 LSIIAESIRDGL--ATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFP-PS 384

Query: 243 NNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP---- 298
            +I        +LS      ++  +  + +V + + +L+K  L++      +  IP    
Sbjct: 385 AHIP-----TILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 299 ----PCLDNTTLHESYID------TSSPESSETSFVDEGFAF---YKEKKIQETFKFTTK 345
                  +   LH S +D      T   +     ++D+ F     +  K I+   + T  
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 346 NIAYTYRGRVISYLSELDLSY--NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
            + +            LD  +   K+                      N +GSI +T   
Sbjct: 494 RMVF------------LDFRFLEQKIRHDSTAW---------------NASGSILNTLQQ 526

Query: 404 LK----HIKSLDLSYNKLDGKIPLQLVELNTLAVF--NVAHNNLSGKIPEWTAQFATFNE 457
           LK    +I   D  Y +L          +N +  F   +  N +  K  +   + A   E
Sbjct: 527 LKFYKPYICDNDPKYERL----------VNAILDFLPKIEENLICSKYTD-LLRIALMAE 575

Query: 458 SSY 460
              
Sbjct: 576 DEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 55/343 (16%), Positives = 96/343 (27%), Gaps = 122/343 (35%)

Query: 180 SLSKCSSLEGLYLSDNNLSGKI-PRWLGNLSMLQHIILPENHFEGPIPMEFCQLD---SL 235
           +L  C+S E +      L  +I P W        +I L  +  +  +            L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 236 QIL-NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
            +L N+ +                        N F        C++    L+        
Sbjct: 248 LVLLNVQNAKAW--------------------NAFNLS-----CKI----LL-------- 270

Query: 295 GHIPPCLDNTTLHESYIDT-SSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353
                    TT  +   D  S+  ++  S          ++          K++      
Sbjct: 271 ---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSL------ 306

Query: 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSI----PSTFSNLKHI-- 407
                L  LD     L    P ++          LS   +         +T+ N KH+  
Sbjct: 307 ----LLKYLDCRPQDL----PREV---LTTNPRRLS---IIAESIRDGLATWDNWKHVNC 352

Query: 408 ----KSLDLSYNKLDGKIPLQLVEL-NTLAVF--NVAHNNLSGKIPE------WTAQFAT 454
                 ++ S N L+   P +  ++ + L+VF  +         IP       W      
Sbjct: 353 DKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSA-------HIPTILLSLIW------ 396

Query: 455 FNESSYEGNPFLCGLPLPKSCNEKASPATEPKTSTSRGKDDYL 497
           F+    +    +  L    S  EK     +PK ST      YL
Sbjct: 397 FDVIKSDVMVVVNKL-HKYSLVEK-----QPKESTISIPSIYL 433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 106 PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNL 164
           P +F     L  +DLSNNQ++ E+      G   L  L+L  N +   L    F  L +L
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL 106

Query: 165 RRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
           + L L+ N    +   +     +L  L L DN L          L  +Q + L +N F 
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 10/151 (6%)

Query: 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE 179
               LT EIP +L      +  + L  N+++  + P  F     LRR+ L  N   E+  
Sbjct: 19  RGKGLT-EIPTNLP---ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAP 73

Query: 180 -SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQI 237
            +     SL  L L  N ++         L  LQ ++L  N     + ++ F  L +L +
Sbjct: 74  DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNL 132

Query: 238 LNISDNNISGIYHHASILSLSKDQLVLAHNN 268
           L++ DN +  I    +   L   Q +    N
Sbjct: 133 LSLYDNKLQTI-AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L+ L L  NK+  ++P  +   L  +Q L L+ N +   +    F +L ++  L L  NK
Sbjct: 82  LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 417 L 417
           L
Sbjct: 140 L 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 361 ELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKL 417
           E+ L  N  I  IPP       +++ ++LS N ++  +    F  L+ + SL L  NK+
Sbjct: 36  EIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L  +DLS N++  ++ P     L  + +L L  N +T  +P   F  L  ++ L L+ NK
Sbjct: 58  LRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK 115

Query: 417 LDGKIPLQ----LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY---EGNPFLC 467
           +   + +     L  LN L++++   N L   I + T  F+            NPF+C
Sbjct: 116 I-NCLRVDAFQDLHNLNLLSLYD---NKLQ-TIAKGT--FSPLRAIQTMHLAQNPFIC 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP----LQLVELNTLAVFNV 436
             I  + L  N +    P  FS  K ++ +DLS N++  ++       L  LN+L    +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 437 AHNNLS 442
             N ++
Sbjct: 88  YGNKIT 93

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 36/238 (15%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS-NNQLTG 127
             V+  ++Q  IP       PS +   +      +    +F N+  +  + +S +  L  
Sbjct: 16  FRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ- 69

Query: 128 EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI--LESLSKC 184
           ++  H       + ++ + N     ++ P     L  L+ L +     +    L  +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
                L ++DN               +  I  P N F+G              L + +N 
Sbjct: 130 DIFFILEITDNPY-------------MTSI--PVNAFQGLCNE-------TLTLKLYNNG 167

Query: 245 ISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQ--LNKLQLIDLSNNILSGHIPP 299
            + +  +A   + +K D + L  N +   +         +   L+D+S   ++  +P 
Sbjct: 168 FTSVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 32/196 (16%), Positives = 76/196 (38%), Gaps = 11/196 (5%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDLSNN 123
           S   L +   +L+  IP      LP++    +S++     + + SF N++ +  +++ N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFREILES- 180
           +    I          L++L + N  L+          +      L++  N +   +   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 181 --LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDS-LQ 236
                C+    L L +N  +  +  +  N + L  + L +N +   I  + F  + S   
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 237 ILNISDNNISGIYHHA 252
           +L++S  +++ +    
Sbjct: 209 LLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 37/236 (15%)

Query: 161 LTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWL-GNLSMLQHIILPE 218
             + + L+L   H R I   + S   ++  +Y+S +    ++      NLS + HI +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 219 NHFEGPIPME-FCQLDSLQILNISDNNISGIYHHASILSLSKDQ-LVLAHNNFEGEVPIQ 276
                 I  +   +L  L+ L I +  +        + S      L +  N +   +P+ 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 277 LCQ--LNKLQLIDLSNNILSGHIPPC-LDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333
             Q   N+   + L NN  +  +     + T L   Y++    ++   + +D+  AF   
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN----KNKYLTVIDKD-AFGG- 202

Query: 334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNL 388
                                V S  S LD+S   +   +P +   +L  +   N 
Sbjct: 203 ---------------------VYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 36/239 (15%)

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
           C   E   ++  ++  +IP    +    Q + L E H        F  L ++  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 244 N-ISGIYHHASILSLSK-DQLVLAHNNFEGEVPIQLCQ-LNKLQLIDLSNNILSGHIPPC 300
             +  +  H+   +LSK   + + +      +     + L  L+ + + N  L    P  
Sbjct: 66  VTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDL 123

Query: 301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLS 360
               +    +I   +     TS     F                          + +   
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQ------------------------GLCNETL 159

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-TFSNLKH-IKSLDLSYNKL 417
            L L  N     +     N T++  + L+ N     I    F  +      LD+S   +
Sbjct: 160 TLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSY 414
             +S + +S +  + Q+      NL+++  + +        I       L  +K L +  
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 415 NKLDGKIP--LQLVELNTLAVFNVAHNNLSGKIPE 447
             L    P   ++   +   +  +  N     IP 
Sbjct: 115 TGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 6e-12
 Identities = 46/246 (18%), Positives = 79/246 (32%), Gaps = 16/246 (6%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
             P   +              L  + P     ++   E  F    S+    +L       
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESC 371

Query: 66  LMLLDVSNNN----LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
             L ++   N    L   + ++  D L   K      +   +  P     ++ L S  L 
Sbjct: 372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431

Query: 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESL 181
            N +         M   D+  L L++  L   +      L  +  L L  N  R +  +L
Sbjct: 432 ENSVLK-------MEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL 482

Query: 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQILNI 240
           +    LE L  SDN L   +   + NL  LQ ++L  N  +             L +LN+
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 241 SDNNIS 246
             N++ 
Sbjct: 541 QGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 46/306 (15%), Positives = 96/306 (31%), Gaps = 24/306 (7%)

Query: 153 HLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQ 212
           H+      L+      L        L  +   + L   + + +  +     WL     L 
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWL---CDLP 305

Query: 213 HIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGE 272
              L +   +    + +   DS +   +  +            +  +             
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD--SATDEQLFRCELSVEKSTV 363

Query: 273 VPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
           +  +L    +LQ ++  N      I   +          +T    S+  +      A+  
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423

Query: 333 EKKIQETFKFTTKNIAYTYRGRV------------ISYLS---ELDLSYNKLIGQIPPQI 377
           + + +   + +   + Y     +            +  L     LDLS+N+L   +PP +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 378 GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG-KIPLQLVELNTLAVFNV 436
             L  ++ L  S N L  ++    +NL  ++ L L  N+L        LV    L + N+
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 437 AHNNLS 442
             N+L 
Sbjct: 541 QGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           L +++ +L     +   + L  + + ++S N    ++P +   +  L  L  S+N L   
Sbjct: 446 LHLAHKDLTV---LCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-N 500

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESLSKCSSL 187
           +   +A     L+ LLL NN L+     +   +   L  L L GN   +      + + +
Sbjct: 501 VDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 55/359 (15%), Positives = 106/359 (29%), Gaps = 101/359 (28%)

Query: 111 NMNFLISLDLSNNQLTGEIPEHLAMG---CVDLEYLLLSNNSL--EGHLFPRNF------ 159
             + +  + LS N +  E    L+       DLE    S+          P         
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 160 --NLTNLRRLQLDGNHF-----REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQ 212
                 L  ++L  N F       +++ LSK + LE LYL +N L  +    +     LQ
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQ 147

Query: 213 HIILPENHFEGPIPMEFCQLDSLQILNISDNNIS--GIYHHASILSLSKD--QLVLAHNN 268
            + + +     P          L+ +    N +    +   A      +    + +  N 
Sbjct: 148 ELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 269 FEGE-VPIQLCQL----NKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSF 323
              E +   L +      +L+++DL +N  +                             
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT----------------------------- 229

Query: 324 VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL-------IGQIPPQ 376
              G        +    K                 L EL L+   L       +     +
Sbjct: 230 -HLGS-----SALAIALKSWPN-------------LRELGLNDCLLSARGAAAVVDAFSK 270

Query: 377 IGNLTRIQTLNLSYNNLTGS-----IPSTFSNLKHIKSLDLSYNKL--DGKIPLQLVEL 428
           + N+  +QTL L YN +               +  +  L+L+ N+   +  +  ++ E+
Sbjct: 271 LENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 103/371 (27%)

Query: 115 LISLDLSNNQLTGEIPEHLA---MGCVDLEYLLLSNNSL--EG--HLFPRNFNLTNLRRL 167
           +    L  + +T E  + +    +    ++ ++LS N++  E    L     +  +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 168 QLDGNH-----------FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIIL 216
           +                 R +L++L KC  L  + LSDN         L +        L
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-------L 118

Query: 217 PENHFEGPIPMEFCQLDSLQILNISDNNIS--GIYHHASILSLSKDQLVLAHNNFEGEVP 274
            ++               L+ L + +N +        A  L          +        
Sbjct: 119 SKHT-------------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP------ 159

Query: 275 IQLCQLNKLQLIDLSNNILSG----HIPPCL-DNTTLHESYIDTSSPESSETSFVDEGFA 329
                   L+ I    N L              +  LH   +        +     EG  
Sbjct: 160 -------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM-------VQNGIRPEGIE 205

Query: 330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL-------IGQIPPQIGNLTR 382
                 + E   +  +             L  LDL  N         +      + +   
Sbjct: 206 ----HLLLEGLAYCQE-------------LKVLDLQDNTFTHLGSSALAIA---LKSWPN 245

Query: 383 IQTLNLSYNNLTG----SIPSTFSNLKH--IKSLDLSYNKLDGKIPLQLVE-----LNTL 431
           ++ L L+   L+     ++   FS L++  +++L L YN+++      L       +  L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 432 AVFNVAHNNLS 442
               +  N  S
Sbjct: 306 LFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 52/334 (15%), Positives = 99/334 (29%), Gaps = 88/334 (26%)

Query: 22  LSHLNLNGEFPNWL-----------LENNTKLESNFLLNNSL--------PGLFLL--PI 60
           +  + L+G   N +           + +   LE     +             L LL   +
Sbjct: 34  VKEIVLSG---NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFL---PSLKYFNISMNAF-------------DSS 104
                L  + +S+N         + DFL     L++  +  N               + +
Sbjct: 91  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 105 IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG---CVDLEYLLLSNNSLE--------GH 153
           +     N   L S+    N+L     +  A        L  + +  N +           
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 154 LFPRNFNLTNLRRLQLDGNHF-----REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNL 208
                     L+ L L  N F       +  +L    +L  L L+D  LS +     G  
Sbjct: 211 GLAYC---QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-----GAA 262

Query: 209 SMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS--GIYHHASILSLSKDQ---LV 263
           +++      EN               LQ L +  N I    +    +++         L 
Sbjct: 263 AVVDAFSKLENI-------------GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309

Query: 264 LAHNNF--EGEVPIQLCQL----NKLQLIDLSNN 291
           L  N F  E +V  ++ ++     + +L +L + 
Sbjct: 310 LNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           L ++NN         I   LP L+  N S N        +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILE-SLSKCSS 186
           +   +  G   L+ L+L +N +   +   +F  L+++R L L  N    +   +     S
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 187 LEGLYLSDN 195
           L  L L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 42  LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAF 101
           L +N        G+F         L  ++ SNN +   I     +    +    ++ N  
Sbjct: 39  LNNNEFTVLEATGIF----KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 102 DSSIPTS-FGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF- 159
             ++    F  +  L +L L +N++T  +     +G   +  L L +N +   + P  F 
Sbjct: 94  -ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150

Query: 160 NLTNLRRLQLDGNHF 174
            L +L  L L  N F
Sbjct: 151 TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 32/155 (20%)

Query: 118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFN-LTNLRRLQLDGNHFRE 176
           L L+NN+ T      +      L  +  SNN +   +    F   + +  + L  N    
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 177 ILESL-SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL 235
           +   +     SL+ L L  N ++                 +  + F G        L S+
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITC----------------VGNDSFIG--------LSSV 131

Query: 236 QILNISDNNISGIYHHA--SILSLSKDQLVLAHNN 268
           ++L++ DN I+ +   A  ++ SLS   L     N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNL---LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           ++E+ L+ N+L   +  ++   L  ++TL L  N +T  + + +F  L  ++ L L  N+
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 417 L 417
           +
Sbjct: 141 I 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 361 ELDLSYNKLIGQIPPQIG--NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           EL L+ N+    +        L +++ +N S N +T      F     +  + L+ N+L
Sbjct: 36  ELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L +++ S NK I  I        + +  + L+ N L  ++    F  L+ +K+L L  N+
Sbjct: 59  LRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNR 116

Query: 417 L 417
           +
Sbjct: 117 I 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSYNK 416
           L  L L  N++   +       L+ ++ L+L  N +T ++    F  L  + +L+L  N 
Sbjct: 107 LKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANP 164

Query: 417 LD 418
            +
Sbjct: 165 FN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 55/183 (30%)

Query: 119 DLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREI 177
           D SN +L  +IPEH+         L L+NN          F  L  LR++    N   +I
Sbjct: 17  DCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 178 LE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQ 236
            E +    S +  + L+ N L                  +    F+G        L+SL+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLEN----------------VQHKMFKG--------LESLK 108

Query: 237 ILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH 296
            L +  N I+ + + +                F G        L+ ++L+ L +N ++  
Sbjct: 109 TLMLRSNRITCVGNDS----------------FIG--------LSSVRLLSLYDNQIT-T 143

Query: 297 IPP 299
           + P
Sbjct: 144 VAP 146

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 16/183 (8%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
            + +  ++   ++   +  K    L  ++ FN   +    S+         L  L LS+N
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNI-QSL-AGMQFFTNLKELHLSHN 73

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK 183
           Q++ ++   L      LE L ++ N L+            L RL LD N  R+  +SL  
Sbjct: 74  QIS-DL-SPLK-DLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDT-DSLIH 126

Query: 184 CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243
             +LE L + +N L   +   LG LS L+ + L  N       +   +L  +  ++++  
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQ 182

Query: 244 NIS 246
              
Sbjct: 183 KCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 40/308 (12%), Positives = 86/308 (27%), Gaps = 82/308 (26%)

Query: 143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIP 202
            +     +   +FP +  L N  +  L      ++  S  + S ++     ++N+     
Sbjct: 2   SIQRPTPIN-QVFP-DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQ---- 54

Query: 203 RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQL 262
               +L+ +Q                     +L+ L++S N IS +     +  L +  L
Sbjct: 55  ----SLAGMQF------------------FTNLKELHLSHNQISDLSPLKDLTKLEE--L 90

Query: 263 VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPES 318
            +  N  +    I    L++L    L NN L           L+  ++  + + +     
Sbjct: 91  SVNRNRLKNLNGIPSACLSRL---FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLG 147

Query: 319 SETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG 378
             +                                     L  LDL  N+ I      + 
Sbjct: 148 FLSK------------------------------------LEVLDLHGNE-ITNTGG-LT 169

Query: 379 NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI--PLQLVELNTLAVFNV 436
            L ++  ++L+              L    ++       DG+   P  +    +     V
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV----KDPDGRWISPYYISNGGSYVDGCV 225

Query: 437 AHNNLSGK 444
                   
Sbjct: 226 LWELPVYT 233

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 99  NAFDSSIPTSFGNMNFLISLDLSNNQLT---GEIPEHLAMGCVDLEYLLLSNNSLEGHLF 155
           N      P  F ++  L  L L +NQL      + + L      L  L L  N L   L 
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTV-LP 104

Query: 156 PRNFN-LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI 214
              F+ L +L+ L +  N   E+   + + + L  L L  N L          LS L H 
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164

Query: 215 ILPEN 219
            L  N
Sbjct: 165 YLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 23/149 (15%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNF 159
           + IPT+         L L +NQ+T ++   +    ++L+ L L +N   +L   +F    
Sbjct: 36  AGIPTNAQI------LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-- 86

Query: 160 NLTNLRRLQLDGNHFREILESLS-----KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI 214
            LT L  L L  N     L  L      +   L+ L++  N L+ ++PR +  L+ L H+
Sbjct: 87  -LTQLTVLDLGTNQ----LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140

Query: 215 ILPENHFEGPIPMEFCQLDSLQILNISDN 243
            L +N  +      F +L SL    +  N
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 359 LSELDLSYNKLIGQIPPQ-IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           L+EL +   + +  +  + +  L  ++ L +  + L    P  F     +  L+LS+N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 418 DGKIPLQLVELNTLAVFNVAHNNL 441
           +  +  + V+  +L    ++ N L
Sbjct: 93  E-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 8e-09
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLT 162
                      L  L + N Q    +      G  +L  L +  + L   + P  F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL 197
            L RL L  N    +     +  SL+ L LS N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 2/102 (1%)

Query: 367 NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLDGKIPLQL 425
                     +     +  L +        +       L  +++L +  + L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 426 VELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
                L+  N++ N L   +   T Q  +  E    GNP  C
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 176 EILESLSKCSSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
           + L  L    +L  LY+ +      +    L  L  L+++ + ++      P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           L  LN+S N +  +    ++  LS  +LVL+ N          C L  LQ  +       
Sbjct: 82  LSRLNLSFNALESL-SWKTVQGLSLQELVLSGNPLH-----CSCALRWLQRWEEEGLGGV 135

Query: 295 GHIPPC 300
                 
Sbjct: 136 PEQKLQ 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 9e-05
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 51  SLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPTS 108
            LPG         ++L  L + N     H+ +   D   L  L+   I  +      P +
Sbjct: 26  HLPGA--------ENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 109 FGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSL 150
           F     L  L+LS N L     + +    + L+ L+LS N L
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
             L  L +  +  +  + P       R+  LNLS+N L      T   L  ++ L LS N
Sbjct: 56  GELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGN 113

Query: 416 KLD 418
            L 
Sbjct: 114 PLH 116

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 46/177 (25%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 47  LLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIP 106
           L +  L  L          L  L++  N LQ  +   + D L  L    ++ N   S   
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 107 TSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR 166
             F ++  L  L L  NQL                       SL   +F R   LT L+ 
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK----------------------SLPSGVFDR---LTKLKE 135

Query: 167 LQLDGNHFREILESL-SKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPENHF 221
           L+L+ N  + I      K ++L+ L LS N L   +P      L  LQ I L  N F
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L+ L+L YN+L   +   +  +LT + TL L+ N L  S+P   F +L  +  L L  N+
Sbjct: 61  LTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ 118

Query: 417 LDGKIPL----QLVELNTL 431
           L   +P     +L +L  L
Sbjct: 119 LK-SLPSGVFDRLTKLKEL 136

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L  L L+ N+L   +P  +  +LT++  L L  N L  S+PS  F  L  +K L L+ N+
Sbjct: 85  LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ 142

Query: 417 L 417
           L
Sbjct: 143 L 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLD- 418
           +LDL    L          LT++  LNL YN L  ++ +  F +L  + +L L+ N+L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 419 --GKIPLQLVELNTL 431
               +   L +L+ L
Sbjct: 98  LPLGVFDHLTQLDKL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 92  KYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN--- 148
            Y ++  N+  S     F  +  L  L L  N+L   +P  +      L YL LS N   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 149 SLEGHLFPRNFNLTNLRRLQLDGNHFREILESLS-----KCSSLEGLYLSDNNLSGKIPR 203
           SL   +F +   LT L+ L L+ N     L+SL      K + L+ L L  N L   +P 
Sbjct: 90  SLPNGVFDK---LTQLKELALNTNQ----LQSLPDGVFDKLTQLKDLRLYQNQLKS-VPD 141

Query: 204 -WLGNLSMLQHIILPEN 219
                L+ LQ+I L +N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 17/114 (14%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFR 175
            L L++N+L     + L      L  L L  N L G + P  F   ++++ LQL  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENK-- 89

Query: 176 EILESLS-----KCSSLEGLYLSDNNLSGKIPRWLG---NLSMLQHIILPENHF 221
             ++ +S         L+ L L DN +S  +    G   +L+ L  + L  N F
Sbjct: 90  --IKEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L +L+L  N+L   I P      + IQ L L  N +   I +  F  L  +K+L+L  N+
Sbjct: 56  LVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQ 113

Query: 417 L 417
           +
Sbjct: 114 I 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 361 ELDLSYNKLIGQIPPQ--IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           EL L+ N+ +G+I      G L  +  L L  N LTG  P+ F    HI+ L L  NK+
Sbjct: 33  ELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           L +++N L       +   LP L    +  N      P +F   + +  L L  N++  E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRN-F-NLTNLRRLQLDGNHF 174
           I   + +G   L+ L L +N +         F +L +L  L L  N F
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSYNK 416
           + EL L  NK+  +I  ++   L +++TLNL  N ++  +   +F +L  + SL+L+ N 
Sbjct: 80  IQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNP 137

Query: 417 LD 418
            +
Sbjct: 138 FN 139

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
           N    R L L G     I    +     + +  SDN +  K+      L  L+ +++  N
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNN 74

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNIS 246
                       L  L  L +++N++ 
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPST 400
           K T + I    +        ELDL   K I  I      L +   ++ S N +   +   
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KL-DG 59

Query: 401 FSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           F  L+ +K+L ++ N++          L  L    + +N+L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 36  LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDF--LPSLKY 93
             N  +     L    +P +  L          +D S+N ++     K+  F  L  LK 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATL-DQFDAIDFSDNEIR-----KLDGFPLLRRLKT 68

Query: 94  FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT--GEIPEHLAMGCVDLEYLLLSNN 148
             ++ N            +  L  L L+NN L   G++ + LA     L YL +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 51/337 (15%), Positives = 105/337 (31%), Gaps = 96/337 (28%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
           + SLDLS N L            V+L     +                ++  L L GN  
Sbjct: 24  VTSLDLSLNNLYSI-------STVELIQAFANTP-------------ASVTSLNLSGNSL 63

Query: 175 -----REILESLSKC-SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME 228
                 E+++ L+   +++  L LS N LS K    L     L                 
Sbjct: 64  GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV--KTLAA--------------- 106

Query: 229 FCQLDSLQILNISDNNIS--GIYHHASILSLSKDQLV---LAHNNFEGEVPIQLCQL--- 280
                ++ +L++  N+ S           S     +    L  N+   +   +L Q+   
Sbjct: 107 --IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164

Query: 281 --NKLQLIDLSNNILS----GHIPPCL--DNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
               +  ++L  N L+      +   L     ++    +       S      + +    
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL-------SANLLGLKSY---- 213

Query: 333 EKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL----IGQIPPQIGNLTRIQTLNL 388
             ++   F     +            +  L+L  N L    +  +     +L  +QT+ L
Sbjct: 214 -AELAYIFSSIPNH------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 389 SYNNLTG-------SIPSTFSNLKHIKSLDLSYNKLD 418
            Y+ +         ++ + F N++ I  +D +  ++ 
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 55/421 (13%), Positives = 113/421 (26%), Gaps = 121/421 (28%)

Query: 35  LLENNTKLES-----NFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP 89
                  + S     N L + S   L     +   S+  L++S N+L      ++   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 90  S----LKYFNISMNAFD----SSIPTSFGNMNF-LISLDLSNNQLTGEIPEHLAMGCVDL 140
           +    +   N+S N         +  +   + F +  LDL  N  + +          + 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-------SSSEF 129

Query: 141 EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF-----REILESLSKC-SSLEGLYLSD 194
           +    +                ++  L L GN        E+++ L+   +++  L L  
Sbjct: 130 KQAFSNLP-------------ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 195 NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI 254
           NNL+ K    L     L  I                   S+  L++S N +       S 
Sbjct: 177 NNLASKNCAELA--KFLASI----PA-------------SVTSLDLSANLLG----LKSY 213

Query: 255 LSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN--------ILSGHIPPCLDNTTL 306
             L+    + +               N +  ++L  N         L           T+
Sbjct: 214 AELAY---IFSSIP------------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSY 366
           +  Y    +    +   +   F                           I  +  +D + 
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAF-------------------------PNIQKIILVDKNG 293

Query: 367 NKLIGQIPPQIGNL-----TRIQTLNLSYNNLT-----GSIPSTFSNLKHIKSLDLSYNK 416
            ++       I NL      +    +L    L       +     +    ++    +   
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 417 L 417
           L
Sbjct: 354 L 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 45/219 (20%)

Query: 22  LSHLNLNG---------EFPNWLLENNTKLESNFLLNNSL-----PGLFLLPIHCHKSLM 67
           ++ LNL+G         E    L      +    L  N               +   S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 68  LLDVSNNNLQGHIPVKIGDFLP----SLKYFNISMNAFDSS----IPTSFGNMNF-LISL 118
            L++  N+L      ++   L     ++   N+  N   S     +     ++   + SL
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201

Query: 119 DLSNNQLTGEIPEHLAMGCVD----LEYLLLSNNSLE-------GHLFPRNFNLTNLRRL 167
           DLS N L  +    LA         +  L L  N L          L        +L+ +
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL---KHLQTV 258

Query: 168 QLDGNHFREI--------LESLSKCSSLEGLYLSDNNLS 198
            LD +  + +          +      +  +  +   + 
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 48/308 (15%), Positives = 91/308 (29%), Gaps = 70/308 (22%)

Query: 179 ESLSKCSSLEGLYLSDNNLSGKIPRWLG-----NLSMLQHIILPENHFEGPIPMEFCQL- 232
           E  S    +  L LS NNL       L        + +  + L  N        E  Q+ 
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 233 ----DSLQILNISDNNIS--GIYHHASILSLSKDQ---LVLAHNNFEGEVPIQLCQL--- 280
                ++  LN+S N +S          L+        L L  N+F  +   +  Q    
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 281 --NKLQLIDLSNNILSG----HIPPCL--DNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
               +  ++L  N L       +   L      ++   +          +   +      
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL-------RGNNLASKNC---- 184

Query: 333 EKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL-------IGQIPPQIGNLTRIQT 385
             ++ +       +            ++ LDLS N L       +  I         + +
Sbjct: 185 -AELAKFLASIPAS------------VTSLDLSANLLGLKSYAELAYIFSS--IPNHVVS 229

Query: 386 LNLSYNNLTGS----IPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL-------NTLAVF 434
           LNL  N L G     +     +LKH++++ L Y+ +      Q   L         + + 
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 435 NVAHNNLS 442
           +     + 
Sbjct: 290 DKNGKEIH 297

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 157 RNFNLTNLRRLQLDGNHFR--EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI 214
           RN   ++++ L LD +     ++     +   LE L   +  L+  I   L  L+ L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 215 ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHN 267
            L +N   G + +   +  +L  LN+S N I  +     +  L     L L + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 352 RGRVISYLSELDLSYNKL-IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
           R R  S + EL L  ++   G++         ++ L+     LT SI +    L  +K L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKL 69

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           +LS N++ G + +   +   L   N++ N + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 131 EHLAMGCVDLEYLLLSNNSL-EGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEG 189
           E       D++ L+L N+   EG L         L  L         I  +L K + L+ 
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKK 68

Query: 190 LYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQILNISDNNIS 246
           L LSDN +SG +         L H+ L  N  +    +E   +L++L+ L++ +  ++
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 359 LSELDLSYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
           L  L      L  I  +P     L +++ L LS N ++G +        ++  L+LS NK
Sbjct: 44  LEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 417 L-DGKIPLQLVELNTLAVFNVAHN 439
           + D      L +L  L   ++ + 
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFN-L 161
           + +P    N   L  +DLSNN+++  +          L  L+LS N L   + PR F+ L
Sbjct: 44  TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGL 101

Query: 162 TNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDN 195
            +LR L L GN    + E + +  S+L  L +  N
Sbjct: 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
           EL L  N+    +P ++ N   +  ++LS N ++     +FSN+  + +L LSYN+L
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 357 SYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSY 414
            +L+ +DLS N+ I  +  Q   N+T++ TL LSYN L   IP  TF  LK ++ L L  
Sbjct: 54  KHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHG 111

Query: 415 NKL 417
           N +
Sbjct: 112 NDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 86  DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLL 145
                L   ++S N   +    SF NM  L++L LS N+L   IP     G   L  L L
Sbjct: 51  SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSL 109

Query: 146 SNNSLEGHLFPRNF--NLTNLRRLQLDGN 172
             N +     P     +L+ L  L +  N
Sbjct: 110 HGNDISV--VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSYNK 416
           L  L LSYN+L   IPP+    L  ++ L+L  N+++  +P   F++L  +  L +  N 
Sbjct: 80  LLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137

Query: 417 LD 418
           L 
Sbjct: 138 LY 139

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  FFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLL 69
           ++    D    +   L      P+      ++    F    S     L        +  +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM 98

Query: 70  DVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN-NQLTGE 128
           D+SN+ ++      I      L+  ++        I  +    + L+ L+LS  +  +  
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 129 IPEHLAMGCVDLEYL------LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR---EILE 179
             + L   C  L+ L        +   ++  +         + +L L G         L 
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLS 215

Query: 180 SLSK-CSSLEGLYLSD-NNLSGKIPRWLGNLSMLQHIIL 216
           +L + C +L  L LSD   L     +    L+ LQH+ L
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 157 RNFNLTNLRRLQLDGNHFR--EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI 214
           RN     +R L LD       +I    ++  +LE L L +  L   +   L  L  L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 215 ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHN 267
            L EN   G + M   +L +L  LN+S N +  I     +  L     L L + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 345 KNIAYTYRGRVISYLSELDLSYNKL-IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403
           + I    R R  + + EL L   K   G+I         ++ L+L    L  S+ S    
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPK 69

Query: 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
           L  +K L+LS N++ G + +   +L  L   N++ N L 
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 26/130 (20%)

Query: 118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI 177
           L L N +      E L    V+LE+L L N  L                           
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-------------------------S 63

Query: 178 LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSLQ 236
           + +L K   L+ L LS+N + G +      L  L H+ L  N  +    +E   +L+ L+
Sbjct: 64  VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123

Query: 237 ILNISDNNIS 246
            L++ +  ++
Sbjct: 124 SLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
            +L  L + N  L       + +   LP LK   +S N     +      +  L  L+LS
Sbjct: 49  VNLEFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 122 NNQLT--GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQ-LDG 171
            N+L     + E L      L+ L L N  +      R      L +L  LDG
Sbjct: 104 GNKLKDISTL-EPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 27/140 (19%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
            L   + L L  N+  +I  SLS   +L  L L  N +  KI         L+ + +  N
Sbjct: 46  TLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
                  +E  +L +L++L +S+N I+      +   + K                 L  
Sbjct: 104 QIASLSGIE--KLVNLRVLYMSNNKIT------NWGEIDK-----------------LAA 138

Query: 280 LNKLQLIDLSNNILSGHIPP 299
           L+KL+ + L+ N L      
Sbjct: 139 LDKLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 105 IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL 164
           +  +   +     L LS N +  +I   L+ G  +L  L L  N ++  +   +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 165 RRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSG-KIPRWLGNLSMLQHIILPEN 219
             L +  N    +   + K  +L  LY+S+N ++       L  L  L+ ++L  N
Sbjct: 96  EELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 35/156 (22%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLE--GHLFPRNFNLTNLRRLQLDGN 172
            + L      +  ++   L+      ++L LS N++E    L      + NLR L L  N
Sbjct: 27  KVELHGMIPPIE-KMDATLS-TLKACKHLALSTNNIEKISSLS----GMENLRILSLGRN 80

Query: 173 HFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
             ++I    +   +LE L++S N ++        +LS ++                   L
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIA--------SLSGIEK------------------L 114

Query: 233 DSLQILNISDNNISGIYHHASILSLSK-DQLVLAHN 267
            +L++L +S+N I+       + +L K + L+LA N
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN--- 415
              L LS N  I +I   +  +  ++ L+L  N +   I +  +    ++ L +SYN   
Sbjct: 50  CKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106

Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLS 442
            L G     + +L  L V  +++N ++
Sbjct: 107 SLSG-----IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 361 ELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK 420
           EL       I ++   +  L   + L LS NN+   I S+ S +++++ L L  N +  K
Sbjct: 29  ELHGMIPP-IEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-K 84

Query: 421 IPLQLVELNTLAVFNVAHNNLS 442
           I       +TL    +++N ++
Sbjct: 85  IENLDAVADTLEELWISYNQIA 106

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 61/395 (15%), Positives = 121/395 (30%), Gaps = 68/395 (17%)

Query: 35  LLENNTKLES-NFLLNN----SLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP 89
           L ++NT LE  NF +      S   L  +  +C +SL+ + V +  +     V       
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILEL--VGFFKAAA 243

Query: 90  SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN-NQLTGEIPEHLAMGCVDLEYLLLSNN 148
           +L+ F       D  +P  + N+ F   L     + +       L      +  L L   
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303

Query: 149 SLEGH-LFPRNFNLTNLRRLQLDGNHFREILESLSK-CSSLEGLYLSDNNLSGKIPRWLG 206
            LE            NL  L+         LE L++ C  L+ L +        +    G
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 207 NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAH 266
            +S    I L +           CQ   L+ + +  ++I+    + S+ S+         
Sbjct: 364 LVSQRGLIALAQG----------CQ--ELEYMAVYVSDIT----NESLESIGT------- 400

Query: 267 NNFEGEVPIQLCQLNKLQLIDLSN--NILSGHIPPCLDNTTLHESYIDTSSPESSETSFV 324
                     L  L   +L+ L     I    +   + +  +    +   +    +    
Sbjct: 401 ---------YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451

Query: 325 DEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG-NLTRI 383
           D G +                     Y G+    +  + L Y     +   +       +
Sbjct: 452 DLGLS---------------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 384 QTLNLSYNNLT-GSIPSTFSNLKHIKSLDLSYNKL 417
           Q L +     +  +I +  + L  ++ L +   + 
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 48/312 (15%), Positives = 104/312 (33%), Gaps = 41/312 (13%)

Query: 17  LEFVRLSHLNLNGEFPNWLLENNTKLES---NFLLNNSLPGLFLLPIHCHKSLMLLDVSN 73
           L F       ++ +    +  N   L S          L G F    +  +      ++ 
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL-EEFCGGSLNE 255

Query: 74  NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHL 133
           +       + +  F   L    +S     + +P  F     +  LDL    L  E    L
Sbjct: 256 DIGMPEKYMNLV-FPRKLCRLGLS-YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 134 AMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI------------LESL 181
              C +LE L   N   +  L         L+RL+++     +             L +L
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 182 SK-CSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIIL---------PENHFEGPIPM 227
           ++ C  LE + +  ++++ +    I  +L NL   + ++L         P ++    + +
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 228 EFCQLDSLQIL----NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ-LNK 282
              +L           ++D  +S I  ++  +      ++L +     E  ++  +    
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW----MLLGYVGESDEGLMEFSRGCPN 489

Query: 283 LQLIDLSNNILS 294
           LQ +++     S
Sbjct: 490 LQKLEMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 39/315 (12%), Positives = 96/315 (30%), Gaps = 49/315 (15%)

Query: 131 EHLAMGCVDLEYLLLSNNSL--EGHLFPRNFNLTNLRRLQLDG-NHFRE--ILESLSKCS 185
             ++     L+ +      +              +L  L+LD  + F    +L  ++ C 
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
            ++ L + +++ S K  +WL  L+                        SL++LN      
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNT--------------------SLEVLNFYMTEF 204

Query: 246 SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT 305
           + I     + +++++   L          ++L     +     + N+         ++  
Sbjct: 205 AKI-SPKDLETIARNCRSLVSVKVGDFEILEL-----VGFFKAAANLEEFCGGSLNEDIG 258

Query: 306 LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLS 365
           + E Y++   P          G ++    ++   F F  +             + +LDL 
Sbjct: 259 MPEKYMNLVFPR----KLCRLGLSYMGPNEMPILFPFAAQ-------------IRKLDLL 301

Query: 366 YNKLIG-QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424
           Y  L        I     ++ L          +       K +K L +     +  +  +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361

Query: 425 LVELNTLAVFNVAHN 439
              ++   +  +A  
Sbjct: 362 EGLVSQRGLIALAQG 376

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 66/446 (14%), Positives = 141/446 (31%), Gaps = 46/446 (10%)

Query: 13  HQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLP--GLFLLPIHCHKSLMLLD 70
           H  D   V          +   +  + T LE   L    +    L L+     K+  +L 
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF-KNFKVLV 136

Query: 71  VSN-NNLQGHIPVKIGDFLPSLKYFNISMNAF----DSSIPTSFGNMNFLISLDLSN--N 123
           +S+           I     +LK  ++  +         +         L+SL++S   +
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQL-------DGNHFRE 176
           +++    E L   C +L+ L L+       L         L  L           + +  
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 177 ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP-IPMEFCQLDSL 235
           +  +LS C  L  L    + +   +P      S L  + L     +   +    CQ   L
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

Query: 236 QILNISDN-NISGIYHHASI--------LSLSKDQLVLAHNNFEGEVPIQLCQ-LNKLQL 285
           Q L + D    +G+   AS         +  S+  ++  +     +  + +     KL+ 
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

Query: 286 IDLSNNILSG----HIPPCLDN-TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
           +      ++      I     N T      I+  +P+      +D GF       ++   
Sbjct: 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI----VEHCK 432

Query: 341 KFTTKNIAYTYRGRVISYLS-------ELDLSYNKLIGQIPPQIG-NLTRIQTLNLSY-N 391
                +++     +V  Y+         L +++          +      ++ L +    
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKL 417
               ++ +  S L+ ++SL +S   +
Sbjct: 493 FGDKALLANASKLETMRSLWMSSCSV 518

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 41/163 (25%)

Query: 65  SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
           +L  L ++ N LQ  +P  + D L +LK   +  N   S     F  +  L  L+L++NQ
Sbjct: 86  NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 125 LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLS-- 182
           L                       SL   +F +   LTNL  L L  N     L+SL   
Sbjct: 145 LQ----------------------SLPKGVFDK---LTNLTELDLSYNQ----LQSLPEG 175

Query: 183 ---KCSSLEGLYLSDNNLSGKIPRWLG---NLSMLQHIILPEN 219
              K + L+ L L  N L   +P   G    L+ LQ+I L +N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 36/203 (17%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHL-FPRNFNL 161
                        I  +L    +T  + ++       ++ ++ +N+ ++          L
Sbjct: 15  DDAFAE------TIKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQY---L 62

Query: 162 TNLRRLQLDGNHFREILESLS---KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218
            N+R L L GN     L  +S   + ++L  L L+ N L          L+ L+ ++L E
Sbjct: 63  PNVRYLALGGNK----LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 219 NHFEGPIPMEFCQLDSLQILNISDNNI----SGIYHHAS---ILSLSKDQL-VLAHNNFE 270
           N  +      F +L +L  LN++ N +     G++   +    L LS +QL  L    F+
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178

Query: 271 GEVPIQLCQLNKLQLIDLSNNIL 293
                   +L +L+ + L  N L
Sbjct: 179 --------KLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNK 416
           L+ L L+ N+L   +P  +   LT ++ L L  N L  S+P   F  L ++  L+L++N+
Sbjct: 87  LTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 417 L 417
           L
Sbjct: 145 L 145

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 23/185 (12%)

Query: 37  ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN----NLQGHIPVKIGDF-LPSL 91
           E     E  F  +       +  I       +LD         ++G   + IG    P+L
Sbjct: 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNL 195

Query: 92  KYFNISMNAFDSSIPTSFGNMNF--LISLDL---SNNQLTGEIPEHLA-----MGCVDLE 141
           K   I       S+       +   L  L L     +                    +L+
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255

Query: 142 YLLLSNNSLEGHL---FPRNFNLTNLRRLQLDGNHF-----REILESLSKCSSLEGLYLS 193
           +L + +   +  +   F  +  L  L  + +          R +L+ + K   L+ + + 
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315

Query: 194 DNNLS 198
            N LS
Sbjct: 316 YNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 359 LSELDLSYNKLIGQIPPQIGN---LTRIQTLNLSYNNLTGS----IPSTFSNLKHIKSLD 411
           L  L +   +    +         L +++T+++S   LT      +      +KH+K ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 412 LSYNKLDGKIPLQLVE 427
           + YN L  ++  +L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 17/123 (13%)

Query: 18  EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQ 77
           +   L  L L     ++  + +  +       +  P           +L  L + +   Q
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-----------NLKWLGIVDAEEQ 265

Query: 78  GHIPVKIG--DFLPSLKYFNISMNAFDSS----IPTSFGNMNFLISLDLSNNQLTGEIPE 131
             +       D LP L+  +IS           +      +  L  +++  N L+ E+ +
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325

Query: 132 HLA 134
            L 
Sbjct: 326 ELQ 328

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 102 DSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSL---EG--HLFP 156
            + +PT   +   + ++D +++ +     +H+  G   +E + L             L  
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQ 108

Query: 157 RNFNLTNLRRLQLDGNHFREI----LESLSKCSSLEGLYLSD 194
                 ++  +++       +    + +L    +L+ L+LSD
Sbjct: 109 LENLQKSMLEMEIISCG--NVTDKGIIALHHFRNLKYLFLSD 148

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 23/158 (14%)

Query: 61  HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG-----NMNFL 115
               +L  +++++  L       +       +   + +N+               +   +
Sbjct: 98  SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 116 ISLDLSNNQLTGEIPEHLAMG---CVDLEYLLLSNNSLE-------GHLFPRNFNLTNLR 165
            +L LSNN LT      L  G      + +L L +  L             RN     L+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN---RQLQ 214

Query: 166 RLQLDGNHF-----REILESLSKCSSLEGLYLSDNNLS 198
            L +  N         +  +  +  SLE L+L  N LS
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 36/153 (23%)

Query: 63  HKSLMLLDVSNNNLQGHIPVK-IGDFL---PSLKYFNISMNAFDSSIPTSFGNM----NF 114
              L  ++++N        +K   + L     +K F+I     +  +  +   M    N 
Sbjct: 35  DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT 94

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
           L SL++ +N ++G     L          L SN SL                L++D    
Sbjct: 95  LKSLNVESNFISGSGILALVEA-------LQSNTSL--------------IELRIDNQSQ 133

Query: 175 -------REILESLSKCSSLEGLYLSDNNLSGK 200
                   EI   L K ++L            +
Sbjct: 134 PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 31/117 (26%)

Query: 117 SLDLSNNQLT---GEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLD 170
           ++D S   L      IP          + L L +N    LE  +F R   LT L RL LD
Sbjct: 13  TVDCSGKSLASVPTGIP-------TTTQVLYLYDNQITKLEPGVFDR---LTQLTRLDLD 62

Query: 171 GNHFREILESLS-----KCSSLEGLYLSDNNLSGKIPRWLG---NLSMLQHIILPEN 219
            N     L  L      K + L  L L+DN L   IPR  G   NL  L HI L  N
Sbjct: 63  NNQ----LTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR--GAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 31/117 (26%)

Query: 117 SLDLSNNQLT---GEIPEHLAMGCVDLEYLLLSNN---SLEGHLFPRNFNLTNLRRLQLD 170
            ++  N +L      IP        D + L L+NN    LE  +F     L NL++L  +
Sbjct: 16  LVNCQNIRLASVPAGIP-------TDKQRLWLNNNQITKLEPGVFDH---LVNLQQLYFN 65

Query: 171 GNHFREILESLS-----KCSSLEGLYLSDNNLSGKIPRWLG---NLSMLQHIILPEN 219
            N     L ++      K + L  L L+DN+L   IPR  G   NL  L HI L  N
Sbjct: 66  SNK----LTAIPTGVFDKLTQLTQLDLNDNHLKS-IPR--GAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 27/124 (21%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NL 161
           + IPT          L L+NNQ+T ++   +    V+L+ L  ++N L   +    F  L
Sbjct: 29  AGIPTD------KQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKL 80

Query: 162 TNLRRLQLDGNHFREI-------LESLSK---------CSSLEGLYLSD--NNLSGKIPR 203
           T L +L L+ NH + I       L+SL+          C   + +YL +   + +  + R
Sbjct: 81  TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMR 140

Query: 204 WLGN 207
           W G 
Sbjct: 141 WDGK 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	528
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-55  Score=474.55  Aligned_cols=471  Identities=29%  Similarity=0.414  Sum_probs=314.3

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCC-CCCCEEEccCCcCccccC
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH-KSLMLLDVSNNNLQGHIP   81 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~   81 (528)
                      ++|.+|.++.++++|++|++++|.+.+.+|..   .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|
T Consensus       235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             CCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence            55677888888888888888888877666542   56666666666666665555555443 666666666666655555


Q ss_pred             hhhhhcCCCCceeeccCCcCcccCCcc-ccCCCCCCEEEccCCcccccCChhhhh------------------------C
Q 038407           82 VKIGDFLPSLKYFNISMNAFDSSIPTS-FGNMNFLISLDLSNNQLTGEIPEHLAM------------------------G  136 (528)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------~  136 (528)
                      ..+.. +++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+..                        .
T Consensus       312 ~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~  390 (768)
T 3rgz_A          312 PFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ  390 (768)
T ss_dssp             GGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred             hHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence            55444 556666666666555444433 555555555555555555445544331                        1


Q ss_pred             --CCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc-CcccCCCCCCCEEEccCCccCccCCccccCCCCCCe
Q 038407          137 --CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH  213 (528)
Q Consensus       137 --l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  213 (528)
                        +++|++|++++|.+++..+..+..+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+.+|..+..+++|++
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence              34566666666666555566666666777777777766633 336666777777777777777667777777777777


Q ss_pred             eecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcC
Q 038407          214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL  293 (528)
Q Consensus       214 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l  293 (528)
                      |++++|++++..|..+..+++|++|++++|++.+..+..+.....+++|++++|++.+.+|..++.+++|+.|++++|++
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            77777777777777777777777777777777766666555545557777777777777777777777777777777777


Q ss_pred             CcCCCCCCcCCccccccccCCCC-------CCCC--ccccc--cccccccccccc-----cceeeeeccc--cccccccc
Q 038407          294 SGHIPPCLDNTTLHESYIDTSSP-------ESSE--TSFVD--EGFAFYKEKKIQ-----ETFKFTTKNI--AYTYRGRV  355 (528)
Q Consensus       294 ~~~~p~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~  355 (528)
                      +|.+|..+...............       ....  .....  ..+.........     ....+..+..  ........
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            77777655443211100000000       0000  00000  000000000000     0000000000  00111123


Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +++|+.||+++|++++.+|..++.+++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCCCCCCCCC
Q 038407          436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKA  479 (528)
Q Consensus       436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~~~c~~~~  479 (528)
                      +++|+++|.+|+.. ++.++...++.|||.+||.|+. .|....
T Consensus       711 ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          711 LSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CcCCcccccCCCch-hhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999999864 8899999999999999999987 887544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-51  Score=444.42  Aligned_cols=432  Identities=29%  Similarity=0.398  Sum_probs=346.5

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      +++.+|. ++++++|++|++++|.+++.+|.. +.++++|++|++++|.+++..|..  .+++|++|++++|.+++.+|.
T Consensus       212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~  287 (768)
T 3rgz_A          212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD  287 (768)
T ss_dssp             CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC
T ss_pred             CCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH
Confidence            3455555 777777888888877777666655 467788888888888777666554  677888888888888777888


Q ss_pred             hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407           83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT  162 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  162 (528)
                      .++..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|...+..+++|++|++++|.+++..+..+..++
T Consensus       288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  367 (768)
T 3rgz_A          288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS  367 (768)
T ss_dssp             CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred             HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence            77775688999999999998888888999999999999999988888887667889999999999998877788887776


Q ss_pred             -CCCEEEccCCcCCcc-CcccCC--CCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEE
Q 038407          163 -NLRRLQLDGNHFREI-LESLSK--CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL  238 (528)
Q Consensus       163 -~L~~L~l~~n~~~~~-~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  238 (528)
                       +|++|++++|.+.+. ++.+..  +++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus       368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence             899999999888753 334444  7889999999999988888899999999999999999998888899999999999


Q ss_pred             EcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccc-cccCCCCC
Q 038407          239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHES-YIDTSSPE  317 (528)
Q Consensus       239 ~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~-~~~~~~~~  317 (528)
                      ++++|.+.+..+..+.....+++|++++|++++.+|..+..+++|+.|++++|++++.+|.++...+.... .+..+...
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            99999998877776666666689999999999888999999999999999999998888887766542111 11100000


Q ss_pred             CCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCC-----------------------
Q 038407          318 SSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIP-----------------------  374 (528)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-----------------------  374 (528)
                          ..                         .......+++|+.|++++|.+.+.+|                       
T Consensus       528 ----~~-------------------------~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          528 ----GN-------------------------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             ----EE-------------------------CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred             ----Cc-------------------------CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence                00                         00001124456666666666555444                       


Q ss_pred             -----------------------------------------------hhhhccccCCEEeCCCccccccCCccccCCCCC
Q 038407          375 -----------------------------------------------PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI  407 (528)
Q Consensus       375 -----------------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  407 (528)
                                                                     ..+..+++|+.|+|++|++++.+|..++++++|
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence                                                           345556889999999999999999999999999


Q ss_pred             CeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       408 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      +.|+|++|++++.+|..++.+++|++|||++|++++.+|..+..+++|+.+++++|+...
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            999999999999999999999999999999999999999999999999999999998754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-49  Score=418.18  Aligned_cols=458  Identities=19%  Similarity=0.191  Sum_probs=306.9

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      +++..|.+|.++++|++|+|++|.+.+..|.. |.++++|++|+|++|.+++..|..+.++++|++|++++|.++ .++.
T Consensus        45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~  122 (606)
T 3t6q_A           45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDF  122 (606)
T ss_dssp             CSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGG
T ss_pred             cCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCc
Confidence            44556778888889999999888887544544 688888999999888888888888888888888988888888 4432


Q ss_pred             hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC--EEEccCCcCcccCCccCCC
Q 038407           83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE--YLLLSNNSLEGHLFPRNFN  160 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~  160 (528)
                      ..+..+++|++|++++|.+++.....+..+++|++|++++|.++ .++...+..+++|+  +|++++|.+++..+..+..
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~  201 (606)
T 3t6q_A          123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS  201 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred             chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhh
Confidence            23334788888888888888655455555888888888888887 55555556778887  7788887776544333221


Q ss_pred             C---------------------------------------------------CCCCEEEccCCcCCccCc-ccCCCCCCC
Q 038407          161 L---------------------------------------------------TNLRRLQLDGNHFREILE-SLSKCSSLE  188 (528)
Q Consensus       161 l---------------------------------------------------~~L~~L~l~~n~~~~~~~-~~~~l~~L~  188 (528)
                      .                                                   .+|++|++++|.+..+++ .+..+++|+
T Consensus       202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  281 (606)
T 3t6q_A          202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ  281 (606)
T ss_dssp             CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred             ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence            0                                                   034555555555555544 355666666


Q ss_pred             EEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccch-hhhccccceeeeccC
Q 038407          189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA-SILSLSKDQLVLAHN  267 (528)
Q Consensus       189 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~L~~n  267 (528)
                      +|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +.....+++|++++|
T Consensus       282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            6666666665 45555666666666666666666555556666666666666666655333322 222223366666666


Q ss_pred             cccccC--cccccCCCCCCEEEccCCcCCcCCCCCCcCCcccc-ccccCCCCCCCCccccccccccccccccccceeeee
Q 038407          268 NFEGEV--PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHE-SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT  344 (528)
Q Consensus       268 ~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (528)
                      .+.+..  +..+..+++|+.|++++|.+.+..|..+...+... ..+..........   ...+   ........+.+..
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~---~~l~~L~~L~l~~  434 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPF---QNLHLLKVLNLSH  434 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT---CCTT---TTCTTCCEEECTT
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc---chhh---hCcccCCEEECCC
Confidence            665544  44556666666666666665555444444332111 0000000000000   0000   0000111111111


Q ss_pred             cccccc--ccccccCcccEEECCCCcCccC---CChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407          345 KNIAYT--YRGRVISYLSELDLSYNKLIGQ---IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG  419 (528)
Q Consensus       345 ~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  419 (528)
                      +.+...  .....+++|++|++++|.+.+.   .+..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            111111  1112367899999999999862   34678999999999999999999999999999999999999999999


Q ss_pred             cCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          420 KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       420 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      ..|..+..++.| +|++++|++++..|..+..+++|+.+++++|||.|+|+.
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999 999999999998888888899999999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-48  Score=424.18  Aligned_cols=464  Identities=21%  Similarity=0.178  Sum_probs=316.5

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      +++..|..|.++++|++|+|++|...+.+++..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++.++.
T Consensus        36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  115 (844)
T 3j0a_A           36 IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK  115 (844)
T ss_dssp             CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred             CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence            34555677777888888888877665566555567788888888888888777777788888888888888877754444


Q ss_pred             h-hhhcCCCCceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCChhhhhCC--CCCCEEEccCCcCcccCCccC
Q 038407           83 K-IGDFLPSLKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPEHLAMGC--VDLEYLLLSNNSLEGHLFPRN  158 (528)
Q Consensus        83 ~-~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~  158 (528)
                      . .+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+. .+  ++|+.|+++.|.+.+..+..+
T Consensus       116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~  194 (844)
T 3j0a_A          116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDW  194 (844)
T ss_dssp             TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred             CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccch
Confidence            3 23337788888888887776544 4677788888888888877755554432 33  667777777777776555555


Q ss_pred             CCCCC------CCEEEccCCcCCccCc-------------------------------------ccCC--CCCCCEEEcc
Q 038407          159 FNLTN------LRRLQLDGNHFREILE-------------------------------------SLSK--CSSLEGLYLS  193 (528)
Q Consensus       159 ~~l~~------L~~L~l~~n~~~~~~~-------------------------------------~~~~--l~~L~~L~L~  193 (528)
                      ..+.+      |+.|++++|.+....+                                     .+..  .++|+.|+++
T Consensus       195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls  274 (844)
T 3j0a_A          195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS  274 (844)
T ss_dssp             CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred             hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence            54444      7888888775542211                                     1111  2578888888


Q ss_pred             CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407          194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV  273 (528)
Q Consensus       194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~  273 (528)
                      +|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++.++.+..+.....+++|++++|.+.+..
T Consensus       275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  354 (844)
T 3j0a_A          275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ  354 (844)
T ss_dssp             TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred             CCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence            88887777778888888888888888888777778888888888888888887776665555556688888888888777


Q ss_pred             cccccCCCCCCEEEccCCcCCcCCC-CCCcCCccccccccCCCCCCCCc---ccccccccc------ccccccccceeee
Q 038407          274 PIQLCQLNKLQLIDLSNNILSGHIP-PCLDNTTLHESYIDTSSPESSET---SFVDEGFAF------YKEKKIQETFKFT  343 (528)
Q Consensus       274 ~~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~  343 (528)
                      +..|..+++|+.|++++|.+++... +.+..+.+....+..........   .+....+..      .........+.+.
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls  434 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN  434 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred             hhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence            7778888888888888888764211 11111111111111000000000   000000000      0011111222233


Q ss_pred             eccccc---cccccccCcccEEECCCCcCc-----cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCC
Q 038407          344 TKNIAY---TYRGRVISYLSELDLSYNKLI-----GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN  415 (528)
Q Consensus       344 ~~~~~~---~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  415 (528)
                      .+.+..   ......+++|+.|++++|.+.     +..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus       435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  514 (844)
T 3j0a_A          435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN  514 (844)
T ss_dssp             SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred             CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence            322221   111122567888888888886     344567888999999999999999999999999999999999999


Q ss_pred             cCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          416 KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       416 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ++++..+..+.  ++|+.|++++|++++..|..+   .+++.+++++|||.|+|++.
T Consensus       515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred             CCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence            99987776665  899999999999999988754   58889999999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.7e-48  Score=405.20  Aligned_cols=428  Identities=19%  Similarity=0.162  Sum_probs=289.8

Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChh
Q 038407            4 VAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVK   83 (528)
Q Consensus         4 ~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~   83 (528)
                      ++..+.+|.++++|++|++++|.+++..| ..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..+..
T Consensus        45 ~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  123 (606)
T 3vq2_A           45 KILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP  123 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC
T ss_pred             CEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc
Confidence            44455567777777777777777763333 33567777777777777777766777777777777777777776322233


Q ss_pred             hhhcCCCCceeeccCCcCcc-cCCccccCCCCCCEEEccCCcccccCChhhhhCCCC----CCEEEccCCcCcccCCcc-
Q 038407           84 IGDFLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD----LEYLLLSNNSLEGHLFPR-  157 (528)
Q Consensus        84 ~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~-  157 (528)
                      +.. +++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..+ ..+.+    +.+|++++|.+++..+.. 
T Consensus       124 ~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~  201 (606)
T 3vq2_A          124 IGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAF  201 (606)
T ss_dssp             CTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTT
T ss_pred             cCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccc
Confidence            333 6777777777777765 346777777777777777777663222211 12221    123444444333211111 


Q ss_pred             -------------------------------------------------------------------------------C
Q 038407          158 -------------------------------------------------------------------------------N  158 (528)
Q Consensus       158 -------------------------------------------------------------------------------~  158 (528)
                                                                                                     +
T Consensus       202 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~  281 (606)
T 3vq2_A          202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF  281 (606)
T ss_dssp             TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC
T ss_pred             cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc
Confidence                                                                                           2


Q ss_pred             CCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEE
Q 038407          159 FNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL  238 (528)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  238 (528)
                      ..+++|+.|++++|.+..++ .+..+++|++|++++|.+. .+| .+ .+++|++|++++|+..+..  .+..+++|++|
T Consensus       282 ~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  355 (606)
T 3vq2_A          282 HCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL  355 (606)
T ss_dssp             GGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred             ccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence            23455555555555555554 5667778888888888884 666 34 7777888888777544332  45677777778


Q ss_pred             EcccCcccccc--cchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC-CCCcCCccccccccCCC
Q 038407          239 NISDNNISGIY--HHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP-PCLDNTTLHESYIDTSS  315 (528)
Q Consensus       239 ~L~~n~l~~~~--~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~~~~~~~~~~~~~  315 (528)
                      ++++|++++..  +..+.....+++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+...+....      
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~------  428 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY------  428 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE------
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE------
Confidence            87777776653  3333333444777777777765 34667777777777777777776554 33333221100      


Q ss_pred             CCCCCccccccccccccccccccceeeeeccccc--cccccccCcccEEECCCCcCcc-CCChhhhccccCCEEeCCCcc
Q 038407          316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY--TYRGRVISYLSELDLSYNKLIG-QIPPQIGNLTRIQTLNLSYNN  392 (528)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~  392 (528)
                                              +.+..+.+..  ......+++|++|++++|.+.+ ..|..+..+++|+.|++++|+
T Consensus       429 ------------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          429 ------------------------LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             ------------------------EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ------------------------EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence                                    0000000000  0001225689999999999987 478899999999999999999


Q ss_pred             ccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccC-CCCcCcccCCCCCCCCCC
Q 038407          393 LTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA-TFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       393 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~l~l~~Np~~c~~~l  471 (528)
                      +++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+.+++++|||.|+|++
T Consensus       485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999999999999999999999999999999999999999999999 5677687886 599999999999999986


Q ss_pred             C
Q 038407          472 P  472 (528)
Q Consensus       472 ~  472 (528)
                      .
T Consensus       564 ~  564 (606)
T 3vq2_A          564 Q  564 (606)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.4e-47  Score=402.20  Aligned_cols=456  Identities=21%  Similarity=0.186  Sum_probs=309.5

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      +++..+.+|.++++|++|+|++|.+++..|. .|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+. .++.
T Consensus        37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~  114 (680)
T 1ziw_A           37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKN  114 (680)
T ss_dssp             CCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCS
T ss_pred             CCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccCh
Confidence            3455556788888888888888888754454 4678888888888888888766667888888888888888887 4544


Q ss_pred             hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhh--hCCCCCCEEEccCCcCcccCC-----
Q 038407           83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA--MGCVDLEYLLLSNNSLEGHLF-----  155 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-----  155 (528)
                      ..+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+  ..+++|++|++++|.+++..+     
T Consensus       115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  193 (680)
T 1ziw_A          115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA  193 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred             hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence            33334788888888888888777777888888888888888776 3333222  123455555555554443222     


Q ss_pred             ----------------------------------------------ccCCCC--CCCCEEEccCCcCCccCc-ccCCCCC
Q 038407          156 ----------------------------------------------PRNFNL--TNLRRLQLDGNHFREILE-SLSKCSS  186 (528)
Q Consensus       156 ----------------------------------------------~~~~~l--~~L~~L~l~~n~~~~~~~-~~~~l~~  186 (528)
                                                                    ..+.++  ++|++|++++|.+..+++ .+..+++
T Consensus       194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (680)
T 1ziw_A          194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ  273 (680)
T ss_dssp             SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence                                                          222222  236667777776666544 5666667


Q ss_pred             CCEEEccCCccCccCCc---------------------------------cccCCCCCCeeecCCceeeccCcccccCCC
Q 038407          187 LEGLYLSDNNLSGKIPR---------------------------------WLGNLSMLQHIILPENHFEGPIPMEFCQLD  233 (528)
Q Consensus       187 L~~L~L~~n~l~~~~~~---------------------------------~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~  233 (528)
                      |++|++++|.+.+..+.                                 .|..+++|++|++++|.+++..+..|.+++
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  353 (680)
T 1ziw_A          274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI  353 (680)
T ss_dssp             CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT
T ss_pred             ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc
Confidence            77777766665543332                                 344566777777788888877777777777


Q ss_pred             CCCEEEcccCc----------------------------ccccccchhhhccccceeeeccCcccccCc-ccccCCCCCC
Q 038407          234 SLQILNISDNN----------------------------ISGIYHHASILSLSKDQLVLAHNNFEGEVP-IQLCQLNKLQ  284 (528)
Q Consensus       234 ~L~~L~L~~n~----------------------------l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~-~~l~~l~~L~  284 (528)
                      +|++|++++|.                            +.++.+..+.....+++|++++|.+.+.++ ..+..+++|+
T Consensus       354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~  433 (680)
T 1ziw_A          354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF  433 (680)
T ss_dssp             TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred             CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence            77777666553                            333333333334455889999998887655 6788888999


Q ss_pred             EEEccCCcCCcCCCCCCcCCc------cccccccCCCCCCCCccccccccccccccccccceeeeeccccccc--ccccc
Q 038407          285 LIDLSNNILSGHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY--RGRVI  356 (528)
Q Consensus       285 ~L~ls~n~l~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  356 (528)
                      .|++++|++.+..+..+...+      +...........+..       +.   .......+.+..+.+....  ....+
T Consensus       434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-------~~---~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-------FQ---PLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-------TT---TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-------cc---cCCCCCEEECCCCCCCcCChhhhccc
Confidence            999998887765554443322      111111110000000       00   0000111112222111111  11236


Q ss_pred             CcccEEECCCCcCccCCC--------hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC
Q 038407          357 SYLSELDLSYNKLIGQIP--------PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL  428 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  428 (528)
                      ++|++|++++|.+++..+        ..|.++++|+.|+|++|+++.+.+..|.++++|++|+|++|+++++.+..|..+
T Consensus       504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            789999999999985422        237889999999999999997666789999999999999999998777788999


Q ss_pred             CCCCEEEccCCCCccCCCCCCc-ccCCCCcCcccCCCCCCCCCC
Q 038407          429 NTLAVFNVAHNNLSGKIPEWTA-QFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       429 ~~L~~L~ls~N~l~~~~p~~~~-~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      ++|++|++++|++++..|..+. .+++|+.+++++|||.|+|+.
T Consensus       584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999988777665 689999999999999999985

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-46  Score=389.92  Aligned_cols=424  Identities=21%  Similarity=0.228  Sum_probs=254.6

Q ss_pred             CchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhh
Q 038407            7 SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD   86 (528)
Q Consensus         7 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~   86 (528)
                      .+.+|.++++|++|+|++|+++ .++...|.++++|++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.
T Consensus        44 ~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~  121 (570)
T 2z63_A           44 GSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIG  121 (570)
T ss_dssp             CTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCT
T ss_pred             ChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCcccc
Confidence            3445556666666666666555 233333455666666666666665555555666666666666666555 33332222


Q ss_pred             cCCCCceeeccCCcCcc-cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC----CEEEccCCcCcccCCccCCCC
Q 038407           87 FLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL----EYLLLSNNSLEGHLFPRNFNL  161 (528)
Q Consensus        87 ~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l  161 (528)
                      .+++|++|++++|.+++ ..|..|.++++|++|++++|.++ .++...+..+++|    ++|++++|.+++..+..+...
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~  200 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI  200 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred             ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC
Confidence            35566666666665554 23555666666666666666555 3332222234444    455555555544333222222


Q ss_pred             CCCCEEEccCCcC----------------------------------------------------------Cc-cCcccC
Q 038407          162 TNLRRLQLDGNHF----------------------------------------------------------RE-ILESLS  182 (528)
Q Consensus       162 ~~L~~L~l~~n~~----------------------------------------------------------~~-~~~~~~  182 (528)
                       +|++|++++|..                                                          .. .+..+.
T Consensus       201 -~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~  279 (570)
T 2z63_A          201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN  279 (570)
T ss_dssp             -EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred             -cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence             344444333310                                                          00 011234


Q ss_pred             CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhcccccee
Q 038407          183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQL  262 (528)
Q Consensus       183 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  262 (528)
                      .+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  .....+++|
T Consensus       280 ~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L  352 (570)
T 2z63_A          280 CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL  352 (570)
T ss_dssp             GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred             CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence            4566777777777666 456566666 6677777666665 3332  2445555555555555443322  111223555


Q ss_pred             eeccCcccccC--cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccce
Q 038407          263 VLAHNNFEGEV--PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF  340 (528)
Q Consensus       263 ~L~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (528)
                      ++++|.+++..  +..+..+++|+.|++++|.+.+..+. +...+...                              .+
T Consensus       353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~------------------------------~L  401 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE------------------------------HL  401 (570)
T ss_dssp             ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC------------------------------EE
T ss_pred             eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC------------------------------EE
Confidence            55555554332  34455555555555555554432111 11111000                              00


Q ss_pred             eeeecccc---ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc-ccCCccccCCCCCCeeeCcCCc
Q 038407          341 KFTTKNIA---YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-GSIPSTFSNLKHIKSLDLSYNK  416 (528)
Q Consensus       341 ~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~  416 (528)
                      .+..+.+.   .......+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|+
T Consensus       402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            00000000   0000122568999999999999889999999999999999999998 5789999999999999999999


Q ss_pred             CcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          417 LDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       417 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      +++..|..+..+++|++|++++|++++..|..+..+++|+.+++++||+.|+|+..
T Consensus       482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            99998999999999999999999999998888889999999999999999998853

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.2e-47  Score=398.10  Aligned_cols=363  Identities=16%  Similarity=0.220  Sum_probs=310.8

Q ss_pred             CCCccccCcCccCCCCCCEEEccCCcCccc-----------------cChhhh--hcCCCCceeeccCCcCcccCCcccc
Q 038407           50 NSLPGLFLLPIHCHKSLMLLDVSNNNLQGH-----------------IPVKIG--DFLPSLKYFNISMNAFDSSIPTSFG  110 (528)
Q Consensus        50 n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-----------------~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~  110 (528)
                      |++++ +|..+.++++|++|++++|.+++.                 +|..+.  . +++|++|++++|.+.+.+|..|.
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHHh
Confidence            46666 788899999999999999999964                 888877  6 88999999999999999999999


Q ss_pred             CCCCCCEEEccCCc-ccc-cCChhhhh-----CCCCCCEEEccCCcCcccCCc--cCCCCCCCCEEEccCCcCC-ccCcc
Q 038407          111 NMNFLISLDLSNNQ-LTG-EIPEHLAM-----GCVDLEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFR-EILES  180 (528)
Q Consensus       111 ~l~~L~~L~l~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~-~~~~~  180 (528)
                      ++++|++|++++|+ +++ .+|..+..     .+++|++|++++|.++ .+|.  .+..+++|++|++++|.+. .++ .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            99999999999998 887 78887652     2389999999999999 6777  8999999999999999999 666 8


Q ss_pred             cCCCCCCCEEEccCCccCccCCccccCCCC-CCeeecCCceeeccCcccccCCC--CCCEEEcccCcccccccchhh---
Q 038407          181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSM-LQHIILPENHFEGPIPMEFCQLD--SLQILNISDNNISGIYHHASI---  254 (528)
Q Consensus       181 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~---  254 (528)
                      +..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|++.+..+..+.   
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            888999999999999998 78888999999 999999999999 7787777655  899999999999887665444   


Q ss_pred             ----hccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccc
Q 038407          255 ----LSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAF  330 (528)
Q Consensus       255 ----~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (528)
                          ....+++|++++|.++...+..+..+++|+.|++++|.++ .+|.........                       
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~-----------------------  482 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE-----------------------  482 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-----------------------
T ss_pred             cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-----------------------
Confidence                3345589999999999666666778999999999999998 666543221100                       


Q ss_pred             ccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhh--ccccCCEEeCCCccccccCCccccCCCCCC
Q 038407          331 YKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG--NLTRIQTLNLSYNNLTGSIPSTFSNLKHIK  408 (528)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  408 (528)
                                           ....+++|++|++++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+
T Consensus       483 ---------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          483 ---------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             ---------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             ---------------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence                                 0001347999999999999 7888886  99999999999999997 888999999999


Q ss_pred             eeeC------cCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCC
Q 038407          409 SLDL------SYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCG  468 (528)
Q Consensus       409 ~L~L------s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~  468 (528)
                      +|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.+++++||+.|-
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            9999      56788889999999999999999999999 57887754  8999999999999983

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-46  Score=396.00  Aligned_cols=355  Identities=20%  Similarity=0.218  Sum_probs=231.5

Q ss_pred             CChhhhhcCCCCCEEEccCCCCccc-----------------cCcCcc--CCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           31 FPNWLLENNTKLESNFLLNNSLPGL-----------------FLLPIH--CHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        31 ~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      +|.. ++++++|++|+|++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..+.. +++|
T Consensus       198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L  275 (636)
T 4eco_A          198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEM  275 (636)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSC
T ss_pred             CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCC
Confidence            5554 46677777777777777764                 666666  7777777777777766667766655 6677


Q ss_pred             ceeeccCCc-Ccc-cCCccccCC------CCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407           92 KYFNISMNA-FDS-SIPTSFGNM------NFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT  162 (528)
Q Consensus        92 ~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  162 (528)
                      ++|++++|+ +++ .+|..+..+      ++|++|++++|+++ .+|. ..+..+++|++|++++|.+++.++ .+..++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            777777776 665 566666554      67777777777776 6665 123467777777777777775555 666677


Q ss_pred             CCCEEEccCCcCCccCcccCCCCC-CCEEEccCCccCccCCccccCCC--CCCeeecCCceeeccCccccc-------CC
Q 038407          163 NLRRLQLDGNHFREILESLSKCSS-LEGLYLSDNNLSGKIPRWLGNLS--MLQHIILPENHFEGPIPMEFC-------QL  232 (528)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~i~~~~~~~l~-------~l  232 (528)
                      +|++|++++|.+..++..+..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+++..|..+.       .+
T Consensus       354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred             CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence            777777777777766666666776 777777777776 5566655543  677777777777766666666       56


Q ss_pred             CCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCC-------CCCEEEccCCcCCcCCCCCCcCCc
Q 038407          233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN-------KLQLIDLSNNILSGHIPPCLDNTT  305 (528)
Q Consensus       233 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~-------~L~~L~ls~n~l~~~~p~~~~~~~  305 (528)
                      ++|++|++++|++++++...+.....+++|++++|+++...+..+....       +|+.|++++|+++ .+|..+... 
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-  510 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT-  510 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT-
T ss_pred             CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc-
Confidence            6777777777777755443333334447777777777633333333222       6777777777766 444433200 


Q ss_pred             cccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCE
Q 038407          306 LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQT  385 (528)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  385 (528)
                                                                       .+++|++|++++|++++ +|..+..+++|+.
T Consensus       511 -------------------------------------------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~  540 (636)
T 4eco_A          511 -------------------------------------------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG  540 (636)
T ss_dssp             -------------------------------------------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred             -------------------------------------------------cCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence                                                             13467777777777775 6666777777777


Q ss_pred             EeC------CCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCC
Q 038407          386 LNL------SYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKI  445 (528)
Q Consensus       386 L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  445 (528)
                      |+|      ++|++.+.+|..+..+++|++|+|++|++. .+|..+.  ++|++|++++|++....
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence            777      445666677777777777777777777773 5565544  57777777777666443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.5e-45  Score=386.14  Aligned_cols=446  Identities=19%  Similarity=0.140  Sum_probs=334.7

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .+|..+.  +.+++|++++|.+++..|.. |.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..|..+.
T Consensus        26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  102 (606)
T 3t6q_A           26 EIPGTLP--NSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS  102 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred             cCcCCCC--CcCcEEEccCCccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence            4555443  37999999999998544544 78999999999999999999999999999999999999999955555555


Q ss_pred             hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCC-hhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC
Q 038407           86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP-EHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL  164 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  164 (528)
                      . +++|++|++++|.+++..+..|.++++|++|++++|.++ .++ ... .++++|++|++++|.+++..+..+..+++|
T Consensus       103 ~-l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  179 (606)
T 3t6q_A          103 G-PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQA  179 (606)
T ss_dssp             S-CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred             c-cccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccc-cCCcccCEEEcccCcccccChhhhhhhccc
Confidence            4 899999999999999877888999999999999999998 443 333 359999999999999998777788899999


Q ss_pred             C--EEEccCCcCCccCcccCCCC----------------------------------------------------CCCEE
Q 038407          165 R--RLQLDGNHFREILESLSKCS----------------------------------------------------SLEGL  190 (528)
Q Consensus       165 ~--~L~l~~n~~~~~~~~~~~l~----------------------------------------------------~L~~L  190 (528)
                      +  +|++++|.+..+++......                                                    +|+.|
T Consensus       180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L  259 (606)
T 3t6q_A          180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI  259 (606)
T ss_dssp             CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred             ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence            9  89999999988765322211                                                    57788


Q ss_pred             EccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCccc
Q 038407          191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFE  270 (528)
Q Consensus       191 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~  270 (528)
                      ++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+..+.....+++|++++|.+.
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence            88889888777888999999999999999999 67888999999999999999999887766666666799999999998


Q ss_pred             ccCcc-cccCCCCCCEEEccCCcCCcCC--CCCCcCCcccc-ccccCCCCCCCCccccccccccccccccccceeeeecc
Q 038407          271 GEVPI-QLCQLNKLQLIDLSNNILSGHI--PPCLDNTTLHE-SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKN  346 (528)
Q Consensus       271 ~~~~~-~l~~l~~L~~L~ls~n~l~~~~--p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (528)
                      +.++. .+..+++|+.|++++|.+.+..  +..+...+... ..+.....    .......+..   ......+.+..+.
T Consensus       339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~---l~~L~~L~l~~n~  411 (606)
T 3t6q_A          339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP----LSLKTEAFKE---CPQLELLDLAFTR  411 (606)
T ss_dssp             CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC----EEECTTTTTT---CTTCSEEECTTCC
T ss_pred             cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC----CcCCHHHhcC---CccCCeEECCCCc
Confidence            66654 5999999999999999998654  44444433111 11111100    0000000000   0011111111111


Q ss_pred             ccc---cccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccccc---CCccccCCCCCCeeeCcCCcCccc
Q 038407          347 IAY---TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS---IPSTFSNLKHIKSLDLSYNKLDGK  420 (528)
Q Consensus       347 ~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~  420 (528)
                      +..   ......+++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|++++.
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            111   11122356777888888877777777777778888888888877752   235577778888888888888777


Q ss_pred             CccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407          421 IPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       421 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                      .|..|..+++|++|++++|++++..|..+..++.| .+++++|...
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence            77777778888888888888877777777777777 7777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.8e-46  Score=397.50  Aligned_cols=363  Identities=17%  Similarity=0.225  Sum_probs=302.0

Q ss_pred             CCCccccCcCccCCCCCCEEEccCCcCcc-----------------ccChhhh-hcCCCCceeeccCCcCcccCCccccC
Q 038407           50 NSLPGLFLLPIHCHKSLMLLDVSNNNLQG-----------------HIPVKIG-DFLPSLKYFNISMNAFDSSIPTSFGN  111 (528)
Q Consensus        50 n~~~~~~~~~~~~~~~L~~L~ls~n~l~~-----------------~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~  111 (528)
                      |.+++ +|..+.++++|++|++++|.+++                 .+|..+. ..+++|++|++++|.+.+.+|..|.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            55555 78889999999999999999996                 2888874 23889999999999999999999999


Q ss_pred             CCCCCEEEccCCc-ccc-cCChhhh------hCCCCCCEEEccCCcCcccCCc--cCCCCCCCCEEEccCCcCCccCccc
Q 038407          112 MNFLISLDLSNNQ-LTG-EIPEHLA------MGCVDLEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFREILESL  181 (528)
Q Consensus       112 l~~L~~L~l~~n~-l~~-~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~  181 (528)
                      +++|+.|++++|+ +++ .+|..+.      ..+++|++|++++|.++ .+|.  .+.++++|++|++++|.+..+| .+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~  591 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AF  591 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence            9999999999998 886 6887553      23459999999999999 6777  7999999999999999999777 88


Q ss_pred             CCCCCCCEEEccCCccCccCCccccCCCC-CCeeecCCceeeccCcccccCCCC--CCEEEcccCcccccccchh-----
Q 038407          182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSM-LQHIILPENHFEGPIPMEFCQLDS--LQILNISDNNISGIYHHAS-----  253 (528)
Q Consensus       182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~-----  253 (528)
                      ..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++.  |+.|++++|++.+..+...     
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            99999999999999998 78888999998 999999999999 67877777654  9999999999987654321     


Q ss_pred             hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccc
Q 038407          254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE  333 (528)
Q Consensus       254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (528)
                      .....++.|++++|.+....+..+..+++|+.|++++|.++ .+|..+.......                         
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~-------------------------  723 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN-------------------------  723 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC-------------------------
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc-------------------------
Confidence            12234589999999999555555568999999999999998 6665543321000                         


Q ss_pred             cccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhh--ccccCCEEeCCCccccccCCccccCCCCCCeee
Q 038407          334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG--NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD  411 (528)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  411 (528)
                                         ...+++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus       724 -------------------l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          724 -------------------YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG  782 (876)
T ss_dssp             -------------------CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred             -------------------ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence                               001347999999999998 6788886  89999999999999996 688889999999999


Q ss_pred             CcC------CcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          412 LSY------NKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       412 Ls~------N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      |++      |++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.+++++||+..
T Consensus       783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            976      778888999999999999999999999 67887654  689999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.6e-45  Score=388.71  Aligned_cols=379  Identities=20%  Similarity=0.206  Sum_probs=302.3

Q ss_pred             CChhhhhcCCCCCEEEccCCCCcc-----------------ccCcCcc--CCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           31 FPNWLLENNTKLESNFLLNNSLPG-----------------LFLLPIH--CHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        31 ~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      +|.. |.++++|++|+|++|.+++                 .+|..+.  ++++|++|++++|.+.+.+|..+.. +++|
T Consensus       440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L  517 (876)
T 4ecn_A          440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPEL  517 (876)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSC
T ss_pred             hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCC
Confidence            6665 5789999999999999988                 3788877  9999999999999988888877776 8899


Q ss_pred             ceeeccCCc-Ccc-cCCccccCC-------CCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCccCCCC
Q 038407           92 KYFNISMNA-FDS-SIPTSFGNM-------NFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPRNFNL  161 (528)
Q Consensus        92 ~~L~L~~n~-i~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  161 (528)
                      ++|++++|+ +++ .+|..+.++       ++|++|++++|.++ .+|. ..+.++++|++|++++|.++ .++ .+..+
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L  594 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN  594 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence            999999998 887 677665554       49999999999998 8887 23458999999999999998 555 88899


Q ss_pred             CCCCEEEccCCcCCccCcccCCCCC-CCEEEccCCccCccCCccccCCCC--CCeeecCCceeeccCcccc---c--CCC
Q 038407          162 TNLRRLQLDGNHFREILESLSKCSS-LEGLYLSDNNLSGKIPRWLGNLSM--LQHIILPENHFEGPIPMEF---C--QLD  233 (528)
Q Consensus       162 ~~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~l---~--~l~  233 (528)
                      ++|+.|++++|.+..++..+..+++ |+.|++++|.+. .+|..+..++.  |+.|++++|.+.+.+|...   .  .++
T Consensus       595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            9999999999999988888888888 999999999988 67877776654  9999999999987655322   2  345


Q ss_pred             CCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCC-------CCCCEEEccCCcCCcCCCCCCcCCcc
Q 038407          234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL-------NKLQLIDLSNNILSGHIPPCLDNTTL  306 (528)
Q Consensus       234 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l-------~~L~~L~ls~n~l~~~~p~~~~~~~~  306 (528)
                      +|+.|++++|++..++...+.....++.|++++|++....+..+...       ++|+.|++++|+++ .+|..+...  
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~--  750 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT--  750 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT--
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc--
Confidence            89999999999986654433334456899999999984333333322       38999999999887 556544310  


Q ss_pred             ccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEE
Q 038407          307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL  386 (528)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  386 (528)
                                                                      .+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus       751 ------------------------------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          751 ------------------------------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             ------------------------------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             ------------------------------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence                                                            14579999999999986 78888899999999


Q ss_pred             eCCC------ccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcc
Q 038407          387 NLSY------NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY  460 (528)
Q Consensus       387 ~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l  460 (528)
                      +|++      |++.+.+|..|.++++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+....+
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L  858 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVL  858 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEE
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheee
Confidence            9976      778888999999999999999999999 57777655  68999999999998776665555555666777


Q ss_pred             cCCCCCC--CCC
Q 038407          461 EGNPFLC--GLP  470 (528)
Q Consensus       461 ~~Np~~c--~~~  470 (528)
                      .+|++.+  +|+
T Consensus       859 ~~n~~~~I~gC~  870 (876)
T 4ecn_A          859 LYDKTQDIRGCD  870 (876)
T ss_dssp             ECCTTSEEESCG
T ss_pred             cCCCccccCCCC
Confidence            7887765  665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.8e-44  Score=378.09  Aligned_cols=418  Identities=18%  Similarity=0.129  Sum_probs=333.2

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .+|..+.  +++++|+|++|.+++ ++...|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..+.
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             cCCCCCC--CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence            3455443  789999999999984 4444478999999999999999998899999999999999999999954466665


Q ss_pred             hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC
Q 038407           86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL  164 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  164 (528)
                      . +++|++|++++|.+++..+..|+++++|++|++++|.+.+ .+|..+ .++++|++|++++|.+++..+..+..+++|
T Consensus       102 ~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          102 G-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             T-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             C-cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            5 8999999999999998888899999999999999999984 467665 589999999999999998777666655544


Q ss_pred             C----EEEccCCcCCccCcccC----------------------------------------------------------
Q 038407          165 R----RLQLDGNHFREILESLS----------------------------------------------------------  182 (528)
Q Consensus       165 ~----~L~l~~n~~~~~~~~~~----------------------------------------------------------  182 (528)
                      +    +|++++|.+..+++...                                                          
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~  259 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC  259 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred             ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence            3    67777777766554322                                                          


Q ss_pred             -----------------------CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEE
Q 038407          183 -----------------------KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN  239 (528)
Q Consensus       183 -----------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  239 (528)
                                             .+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|+
T Consensus       260 ~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~  334 (606)
T 3vq2_A          260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLT  334 (606)
T ss_dssp             GSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEE
T ss_pred             hccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceee
Confidence                                   2344555555555554 233 677788999999999999 4677 45 999999999


Q ss_pred             cccCcccccccchhhhccccceeeeccCccccc--CcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCC
Q 038407          240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGE--VPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPE  317 (528)
Q Consensus       240 L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~  317 (528)
                      +++|+..+..  .+.....+++|++++|.+++.  .+..+..+++|+.|++++|.+.+ +|..+...+....        
T Consensus       335 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~--------  403 (606)
T 3vq2_A          335 LTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH--------  403 (606)
T ss_dssp             EESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE--------
T ss_pred             ccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe--------
Confidence            9999654433  223334559999999999876  47889999999999999999875 4454444331110        


Q ss_pred             CCCccccccccccccccccccceeeeecccccc---ccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc
Q 038407          318 SSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT---YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT  394 (528)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  394 (528)
                                            +.+..+.+...   .....+++|++|++++|.+.+..|..+..+++|++|++++|+++
T Consensus       404 ----------------------L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  461 (606)
T 3vq2_A          404 ----------------------LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK  461 (606)
T ss_dssp             ----------------------EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             ----------------------eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence                                  01111111000   11123678999999999999889999999999999999999999


Q ss_pred             c-cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407          395 G-SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       395 ~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                      + .+|..|+.+++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++|...
T Consensus       462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            7 47899999999999999999999999999999999999999999999998999999999999999999865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.2e-45  Score=377.29  Aligned_cols=422  Identities=20%  Similarity=0.169  Sum_probs=287.2

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .+|+.+.  ++|++|++++|++++..|.. |.++++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...+
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~   94 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWF   94 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHH
T ss_pred             cccccCC--CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHh
Confidence            4555443  79999999999998555554 689999999999999999988899999999999999999999 5555544


Q ss_pred             hcCCCCceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC
Q 038407           86 DFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL  164 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  164 (528)
                      ..+++|++|++++|.+++. .|..+.++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+..+..+++|
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence            4589999999999999863 567899999999999999985557876666789999999999999998888888877777


Q ss_pred             CEEEccCCcCCccCcc-cCCCCCCCEEEccCCccCccC--C-c----------------------------cccCCCCCC
Q 038407          165 RRLQLDGNHFREILES-LSKCSSLEGLYLSDNNLSGKI--P-R----------------------------WLGNLSMLQ  212 (528)
Q Consensus       165 ~~L~l~~n~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~--~-~----------------------------~l~~l~~L~  212 (528)
                      ++|++++|.+..++.. +..+++|++|++++|.+.+..  + .                            .+..+++|+
T Consensus       175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~  254 (549)
T 2z81_A          175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS  254 (549)
T ss_dssp             EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred             ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence            7777777776655442 234666677777766665421  0 0                            111223333


Q ss_pred             eeecCCceeeccCc-----------------------------------ccccCCCCCCEEEcccCcccccccchhhhcc
Q 038407          213 HIILPENHFEGPIP-----------------------------------MEFCQLDSLQILNISDNNISGIYHHASILSL  257 (528)
Q Consensus       213 ~L~L~~n~i~~~~~-----------------------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  257 (528)
                      .+++++|.+.+...                                   ..+....+|+.|++++|++..++...+....
T Consensus       255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~  334 (549)
T 2z81_A          255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK  334 (549)
T ss_dssp             EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred             ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence            33333333322100                                   0011123556666666665544322212233


Q ss_pred             ccceeeeccCcccccCc---ccccCCCCCCEEEccCCcCCcCCC--CCCcCCccccccccCCCCCCCCcccccccccccc
Q 038407          258 SKDQLVLAHNNFEGEVP---IQLCQLNKLQLIDLSNNILSGHIP--PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK  332 (528)
Q Consensus       258 ~~~~L~L~~n~l~~~~~---~~l~~l~~L~~L~ls~n~l~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (528)
                      .+++|++++|++.+..|   ..+..+++|+.|++++|++++..+  ..+...+...                        
T Consensus       335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~------------------------  390 (549)
T 2z81_A          335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT------------------------  390 (549)
T ss_dssp             TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC------------------------
T ss_pred             cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC------------------------
Confidence            34666666666655442   224555666666666665542110  0011110000                        


Q ss_pred             ccccccceeeeecccc-ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeee
Q 038407          333 EKKIQETFKFTTKNIA-YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD  411 (528)
Q Consensus       333 ~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  411 (528)
                            .+.+..+.+. .......+++|++|++++|.++ .+|..+  .++|++|++++|++++.+    ..+++|++|+
T Consensus       391 ------~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~  457 (549)
T 2z81_A          391 ------SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELY  457 (549)
T ss_dssp             ------EEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred             ------EEECCCCCCccCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEE
Confidence                  0000000000 0000012457999999999987 344433  268999999999998643    5789999999


Q ss_pred             CcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          412 LSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       412 Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      |++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.+++++|||.|+|+
T Consensus       458 Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999 5665 5689999999999999999999888899999999999999999997

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.2e-45  Score=376.41  Aligned_cols=419  Identities=22%  Similarity=0.239  Sum_probs=311.8

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .+|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..  
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--   87 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--   87 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred             ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence            4676655  89999999999998 455445789999999999999999988999999999999999999999 78776  


Q ss_pred             hcCCCCceeeccCCcCcc-cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC--CEEEccCCcC--cccCCccCCC
Q 038407           86 DFLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL--EYLLLSNNSL--EGHLFPRNFN  160 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~  160 (528)
                       .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++    ..+..+++|  ++|++++|.+  .+..+..+..
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~  162 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD  162 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccc
Confidence             48999999999999987 468899999999999999999874    223467788  9999999998  5555555544


Q ss_pred             --------------------------CCCCCEEEccCCc-------CCccCcccCCCCCCCEEEccCCccCccCCcccc-
Q 038407          161 --------------------------LTNLRRLQLDGNH-------FREILESLSKCSSLEGLYLSDNNLSGKIPRWLG-  206 (528)
Q Consensus       161 --------------------------l~~L~~L~l~~n~-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-  206 (528)
                                                +++|+.|++++|.       +.+..+.+..+++|+.|++++|.+.+.....+. 
T Consensus       163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  242 (520)
T 2z7x_B          163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ  242 (520)
T ss_dssp             CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred             cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence                                      4555556666554       332233556666777777766665532211111 


Q ss_pred             --CCCCCCeeecCCceeeccCcccc-----cCCCCCCEEEcccCcccccccchhhhc---cccceeeeccCcccccCccc
Q 038407          207 --NLSMLQHIILPENHFEGPIPMEF-----CQLDSLQILNISDNNISGIYHHASILS---LSKDQLVLAHNNFEGEVPIQ  276 (528)
Q Consensus       207 --~l~~L~~L~L~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~~L~L~~n~l~~~~~~~  276 (528)
                        ..++|++|++++|++++.+|..+     ..+++|+.+++++|.+ .++.......   ...+.|++++|.+....  .
T Consensus       243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~  319 (520)
T 2z7x_B          243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--C  319 (520)
T ss_dssp             HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--C
T ss_pred             HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--c
Confidence              13578888888888887788777     7888888888888887 3332222211   34577888888775432  1


Q ss_pred             ccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc----ccc
Q 038407          277 LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY----TYR  352 (528)
Q Consensus       277 l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  352 (528)
                      +..+++|++|++++|.+++..|..+...+....                              +.+..+.+..    ...
T Consensus       320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~------------------------------L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELET------------------------------LILQMNQLKELSKIAEM  369 (520)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE------------------------------EECCSSCCCBHHHHHHH
T ss_pred             hhhCCcccEEEeECCccChhhhhhhccCCCCCE------------------------------EEccCCccCccccchHH
Confidence            257788888888888887767766654431110                              0111111100    000


Q ss_pred             ccccCcccEEECCCCcCccCCCh-hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCC
Q 038407          353 GRVISYLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL  431 (528)
Q Consensus       353 ~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  431 (528)
                      ...+++|++|++++|.+.+.+|. .+..+++|+.|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|
T Consensus       370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L  446 (520)
T 2z7x_B          370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL  446 (520)
T ss_dssp             HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC
Confidence            12367899999999999974555 488899999999999999887777664  79999999999999 778878899999


Q ss_pred             CEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          432 AVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       432 ~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      ++|++++|++++..+..+..+++|+.+++++||+.|+|++
T Consensus       447 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9999999999954444477899999999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-43  Score=375.51  Aligned_cols=456  Identities=21%  Similarity=0.220  Sum_probs=309.3

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG   85 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~   85 (528)
                      .+|..+.  +++++|+|++|.++ .++...|.++++|++|++++|.+++..+.++.++++|++|++++|.++ .+|...+
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~   93 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTF   93 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhh
Confidence            3555443  79999999999998 566655799999999999999999988999999999999999999999 7777655


Q ss_pred             hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCC--CCCC
Q 038407           86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTN  163 (528)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~  163 (528)
                      ..+++|++|++++|.+++..+..|+++++|++|++++|.+++..+. .+.++++|++|++++|.+++..+..+.  .+++
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            5589999999999999988888999999999999999999854444 445899999999999999875555443  5689


Q ss_pred             CCEEEccCCcCCccCc-ccCC---------------------------CCCCCEEEccCCccCccCCccccCCCC--CCe
Q 038407          164 LRRLQLDGNHFREILE-SLSK---------------------------CSSLEGLYLSDNNLSGKIPRWLGNLSM--LQH  213 (528)
Q Consensus       164 L~~L~l~~n~~~~~~~-~~~~---------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~  213 (528)
                      |++|++++|.+.++++ .+..                           .++|+.|++++|.+.+..+..+..++.  |++
T Consensus       173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~  252 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM  252 (680)
T ss_dssp             ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred             ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence            9999999999887755 3322                           256777888888887777777777654  888


Q ss_pred             eecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccc-----cCc----ccccCCCCCC
Q 038407          214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG-----EVP----IQLCQLNKLQ  284 (528)
Q Consensus       214 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~-----~~~----~~l~~l~~L~  284 (528)
                      |++++|.+++..+..|..+++|++|++++|++.+..+..+.....++++++++|...+     .+|    ..+..+++|+
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~  332 (680)
T 1ziw_A          253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE  332 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred             EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence            8888888887777788888888888888888877766555444445666666654332     112    2556666677


Q ss_pred             EEEccCCcCCcCCCCCCcCCccccc-cccCCCCC------CCCc-----ccccc-----cc-----ccccccccccceee
Q 038407          285 LIDLSNNILSGHIPPCLDNTTLHES-YIDTSSPE------SSET-----SFVDE-----GF-----AFYKEKKIQETFKF  342 (528)
Q Consensus       285 ~L~ls~n~l~~~~p~~~~~~~~~~~-~~~~~~~~------~~~~-----~~~~~-----~~-----~~~~~~~~~~~~~~  342 (528)
                      .|++++|.+.+..+..+...+.... .+......      ....     .+...     .+     ...........+.+
T Consensus       333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  412 (680)
T 1ziw_A          333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL  412 (680)
T ss_dssp             EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence            7777777666555544444321111 00000000      0000     00000     00     00000001111112


Q ss_pred             eecccccc---ccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc--ccCCccccCCCCCCeeeCcCCcC
Q 038407          343 TTKNIAYT---YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT--GSIPSTFSNLKHIKSLDLSYNKL  417 (528)
Q Consensus       343 ~~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l  417 (528)
                      ..+.+...   .....+++|++|++++|++.+..+..|..+++|+.|++++|.+.  +..|..|.++++|++|+|++|++
T Consensus       413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence            21111110   11123456666666666666666666666667777777766665  45667777777777778877777


Q ss_pred             cccCccccccCCCCCEEEccCCCCccCCC--------CCCcccCCCCcCcccCCCCC
Q 038407          418 DGKIPLQLVELNTLAVFNVAHNNLSGKIP--------EWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       418 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p--------~~~~~~~~l~~l~l~~Np~~  466 (528)
                      +++.+..|..+++|++|++++|++++..+        ..+..+++|+.+++++|...
T Consensus       493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence            77666677777778888888877765422        22456677777777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-43  Score=380.75  Aligned_cols=452  Identities=19%  Similarity=0.104  Sum_probs=345.3

Q ss_pred             CCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCcccc-CcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           13 HQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLF-LLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        13 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      -.+++++|+|++|.+++..|.. |.++++|++|+|++|...+.+ +.+|.++++|++|++++|.+.+..|..+.. +++|
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L   99 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHL   99 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSC
T ss_pred             CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-Cccc
Confidence            4589999999999998655555 689999999999999665554 788999999999999999999555655555 8999


Q ss_pred             ceeeccCCcCcccCCcc--ccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCC--CCCCEE
Q 038407           92 KYFNISMNAFDSSIPTS--FGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL--TNLRRL  167 (528)
Q Consensus        92 ~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L  167 (528)
                      ++|++++|.+++..+..  |.++++|++|++++|.+++..+...+.++++|++|++++|.+++..+..+..+  ++|+.|
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            99999999998765554  99999999999999999855554556789999999999999998777888776  899999


Q ss_pred             EccCCcCCccCc-ccCCCCC------CCEEEccCCccCccCCccccC---------------------------------
Q 038407          168 QLDGNHFREILE-SLSKCSS------LEGLYLSDNNLSGKIPRWLGN---------------------------------  207 (528)
Q Consensus       168 ~l~~n~~~~~~~-~~~~l~~------L~~L~L~~n~l~~~~~~~l~~---------------------------------  207 (528)
                      ++++|.+....+ .+..+++      |+.|++++|.+.+..+..+..                                 
T Consensus       180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            999999887543 4555444      999999999776554443321                                 


Q ss_pred             -----CCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCC
Q 038407          208 -----LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK  282 (528)
Q Consensus       208 -----l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~  282 (528)
                           .++|++|++++|.+.+..+..|..+++|+.|++++|++.++.+..+.....+++|++++|.+.+..+..|..+++
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence                 268999999999999888999999999999999999999988876666667799999999999998999999999


Q ss_pred             CCEEEccCCcCCcCCCCCCcCCcccc-ccccCCCCCCC--Ccccccccccccccc------ccccceeeeeccccc---c
Q 038407          283 LQLIDLSNNILSGHIPPCLDNTTLHE-SYIDTSSPESS--ETSFVDEGFAFYKEK------KIQETFKFTTKNIAY---T  350 (528)
Q Consensus       283 L~~L~ls~n~l~~~~p~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~  350 (528)
                      |+.|++++|.+.+..+..+...+... ..+..+.....  ...+....+......      .....+.+..+.+..   .
T Consensus       340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~  419 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL  419 (844)
T ss_dssp             CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTH
T ss_pred             CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchh
Confidence            99999999999876666665543211 11111111100  000000000000000      000111111111111   1


Q ss_pred             ccccccCcccEEECCCCcCccCCCh-hhhccccCCEEeCCCcccc-----ccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407          351 YRGRVISYLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLT-----GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ  424 (528)
Q Consensus       351 ~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  424 (528)
                      +....+++|++|++++|.+++..+. .+..+++|+.|+|++|.++     +..+..|.++++|++|+|++|++++..|..
T Consensus       420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  499 (844)
T 3j0a_A          420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV  499 (844)
T ss_dssp             HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred             hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence            1112467899999999998854433 3566889999999999987     344567899999999999999999999999


Q ss_pred             cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCC
Q 038407          425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCG  468 (528)
Q Consensus       425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~  468 (528)
                      |..+++|++|+|++|++++..|..+.  ++|+.+++++|....-
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP  541 (844)
T ss_dssp             SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred             ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence            99999999999999999987777654  8899999999987653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-43  Score=358.93  Aligned_cols=384  Identities=21%  Similarity=0.226  Sum_probs=310.2

Q ss_pred             CCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeec
Q 038407           17 LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNI   96 (528)
Q Consensus        17 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (528)
                      -+.++.++++++ .+|. +   .++|++|+|++|.+++..+..+.++++|++|++++|.+.+.++...+..+++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            346777888776 7776 2   3789999999999998888889999999999999998876776665556889999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCcc-CCCCCCCCEEEccCCcC
Q 038407           97 SMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPR-NFNLTNLRRLQLDGNHF  174 (528)
Q Consensus        97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~  174 (528)
                      ++|.+++..|..|.++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+.. +.++++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99999988889999999999999999998754433 23457889999999999998765655 77889999999999998


Q ss_pred             CccCc-ccCCC--CCCCEEEccCCccCccCCcc--------ccCCCCCCeeecCCceeeccCcccccCC---CCCCEEEc
Q 038407          175 REILE-SLSKC--SSLEGLYLSDNNLSGKIPRW--------LGNLSMLQHIILPENHFEGPIPMEFCQL---DSLQILNI  240 (528)
Q Consensus       175 ~~~~~-~~~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~L  240 (528)
                      ....+ .+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++++..+..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            87755 44443  67889999999887554433        2356789999999999887777665543   78899999


Q ss_pred             ccCcccccccchhhhccccceeeeccCcccccCccccc--CCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCC
Q 038407          241 SDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC--QLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPES  318 (528)
Q Consensus       241 ~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~--~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~  318 (528)
                      ++|.+.+....              .+.+....+..+.  ..++|+.|++++|.+.+..|..+..               
T Consensus       247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------  297 (455)
T 3v47_A          247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH---------------  297 (455)
T ss_dssp             TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT---------------
T ss_pred             ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhccc---------------
Confidence            98876543211              1112222222222  2468999999999998777766654               


Q ss_pred             CCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCC
Q 038407          319 SETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP  398 (528)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  398 (528)
                                                           +++|++|++++|.+.+..|..|..+++|+.|+|++|++++..|
T Consensus       298 -------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          298 -------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             -------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence                                                 3479999999999998888899999999999999999998888


Q ss_pred             ccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          399 STFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       399 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      ..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.+++++||+.|+||.
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999999999999999988899999999999999999999987777778899999999999999999984

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-42  Score=367.27  Aligned_cols=423  Identities=17%  Similarity=0.131  Sum_probs=309.6

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF   94 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (528)
                      +++++|+|++|+++ .+|+..|.++++|++|+|++|++++..+.+|.++++|++|+|++|+++ .+|...+..+++|++|
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            47999999999998 666655899999999999999999888889999999999999999998 7777777779999999


Q ss_pred             eccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCC----CCEEEcc
Q 038407           95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTN----LRRLQLD  170 (528)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----L~~L~l~  170 (528)
                      ++++|++++..+..|+++++|++|++++|.+++.-....+..+++|++|++++|++++..+..+..+.+    ...++++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            999999998888889999999999999999974222334457999999999999998766655543332    2345565


Q ss_pred             CCcCCccCcccCCC------------------------------------------------------------------
Q 038407          171 GNHFREILESLSKC------------------------------------------------------------------  184 (528)
Q Consensus       171 ~n~~~~~~~~~~~l------------------------------------------------------------------  184 (528)
                      .|.+..+++.....                                                                  
T Consensus       210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            55554433211111                                                                  


Q ss_pred             ----------------CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCc-------------------ccc
Q 038407          185 ----------------SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP-------------------MEF  229 (528)
Q Consensus       185 ----------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-------------------~~l  229 (528)
                                      .+++.+++.++.+...  ..+.....++.|++.+|.+....+                   ...
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  367 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  367 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred             hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence                            1222222222222111  123334556677776666543222                   123


Q ss_pred             cCCCCCCEEEcccCcccccc--cchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC-CcCCcc
Q 038407          230 CQLDSLQILNISDNNISGIY--HHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC-LDNTTL  306 (528)
Q Consensus       230 ~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~~  306 (528)
                      ..+++|+.+++++|.+....  +.........+.+++..+..... +..+..+++|+.++++.+......+.. +.....
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~  446 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  446 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccc
Confidence            35788999999999886543  33334444558888888877643 456778888999998888766544322 221110


Q ss_pred             ccccccCCCCCCCCccccccccccccccccccceeeeecccc--ccccccccCcccEEECCCCcCc-cCCChhhhccccC
Q 038407          307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA--YTYRGRVISYLSELDLSYNKLI-GQIPPQIGNLTRI  383 (528)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L  383 (528)
                      ..                              ......+...  .......++.++.|++++|.+. +..|..|..+++|
T Consensus       447 l~------------------------------~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          447 LI------------------------------YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             CC------------------------------EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cc------------------------------cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            00                              0000000000  0011123568999999999754 4578889999999


Q ss_pred             CEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCccc-CCCCcCcccC
Q 038407          384 QTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQF-ATFNESSYEG  462 (528)
Q Consensus       384 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~l~l~~  462 (528)
                      ++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|++|++++|++++..|..+..+ .+|+.+++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            999999999999999999999999999999999999999999999999999999999999999998887 6899999999


Q ss_pred             CCCCCCCCCC
Q 038407          463 NPFLCGLPLP  472 (528)
Q Consensus       463 Np~~c~~~l~  472 (528)
                      |||.|+|++.
T Consensus       577 Np~~C~C~~~  586 (635)
T 4g8a_A          577 NDFACTCEHQ  586 (635)
T ss_dssp             CCBCCSGGGH
T ss_pred             CCCcccCCcH
Confidence            9999999753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=361.94  Aligned_cols=413  Identities=17%  Similarity=0.139  Sum_probs=333.2

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF   94 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (528)
                      +++++|++++|++++ ++...|.++++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...+..+++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence            579999999999984 44444789999999999999999988889999999999999999998 5554444458999999


Q ss_pred             eccCCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC----CEEEc
Q 038407           95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL----RRLQL  169 (528)
Q Consensus        95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l  169 (528)
                      ++++|.+++..+..|+++++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+..+..+++|    +.|++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            999999997777689999999999999999984 357665 579999999999999998777778877787    89999


Q ss_pred             cCCcCCccCcccCCCCCCCEEEccCC------------------------------------------------------
Q 038407          170 DGNHFREILESLSKCSSLEGLYLSDN------------------------------------------------------  195 (528)
Q Consensus       170 ~~n~~~~~~~~~~~l~~L~~L~L~~n------------------------------------------------------  195 (528)
                      ++|.+..+++......+|+.|++++|                                                      
T Consensus       185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            99999988773333347888888776                                                      


Q ss_pred             ----ccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccc
Q 038407          196 ----NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG  271 (528)
Q Consensus       196 ----~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~  271 (528)
                          .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+..++..   .....+++++++|.+.+
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~---~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBC---BCSSCCEEEEESCBSCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcc---cccccCEEeCcCCcccc
Confidence                223345566778899999999999998 577788888 999999999999865442   23345899999999887


Q ss_pred             cCcccccCCCCCCEEEccCCcCCcCC--CCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc
Q 038407          272 EVPIQLCQLNKLQLIDLSNNILSGHI--PPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY  349 (528)
Q Consensus       272 ~~~~~l~~l~~L~~L~ls~n~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (528)
                      ..+.  ..+++|+.|++++|.+++..  |..+...+..                              ..+.+..+.+..
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L------------------------------~~L~l~~n~l~~  387 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL------------------------------KYLDLSFNGVIT  387 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC------------------------------CEEECCSCSEEE
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCcc------------------------------CEEECCCCcccc
Confidence            7665  78999999999999987432  2222211100                              000111100000


Q ss_pred             -cccccccCcccEEECCCCcCccCCC-hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc-ccCccccc
Q 038407          350 -TYRGRVISYLSELDLSYNKLIGQIP-PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD-GKIPLQLV  426 (528)
Q Consensus       350 -~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~  426 (528)
                       ......+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..|.++++|++|++++|+++ +.+|..+.
T Consensus       388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  467 (570)
T 2z63_A          388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  467 (570)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence             0001236789999999999987655 57899999999999999999999999999999999999999998 57889999


Q ss_pred             cCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          427 ELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       427 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      .+++|++|++++|++++..|..+..+++|+.+++++|....
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            99999999999999999999999999999999999997654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=353.71  Aligned_cols=412  Identities=21%  Similarity=0.211  Sum_probs=228.9

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF   94 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L   94 (528)
                      ++|++|++++|.++ .++...|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..   .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            55666666666665 333333456666666666666666555556666666666666666665 45544   25566666


Q ss_pred             eccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCCC--CEEEccCCcC--cccCCccCCCCC-CCCEEE
Q 038407           95 NISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL--EYLLLSNNSL--EGHLFPRNFNLT-NLRRLQ  168 (528)
Q Consensus        95 ~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~  168 (528)
                      ++++|++++. .|..|+++++|++|++++|.+++ ..   +..+++|  ++|++++|.+  ++..+..+..+. ..-.++
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~  202 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV  202 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence            6666666542 24556666666666666665552 11   1223333  6666666655  433333333221 000112


Q ss_pred             ccCCcCCccCc--ccCCCCCCCEEEccCC----------------------------ccCcc----CCccccCCCCCCee
Q 038407          169 LDGNHFREILE--SLSKCSSLEGLYLSDN----------------------------NLSGK----IPRWLGNLSMLQHI  214 (528)
Q Consensus       169 l~~n~~~~~~~--~~~~l~~L~~L~L~~n----------------------------~l~~~----~~~~l~~l~~L~~L  214 (528)
                      +++|.+.....  .+..+++|+.+++++|                            .+.+.    .+.. ...++|++|
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L  281 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL  281 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence            22222221111  1223334444444443                            22211    0111 122477888


Q ss_pred             ecCCceeeccCcccc-----cCCCCCCEEEcccCcccccccchh---hhccccceeeeccCcccccCcccccCCCCCCEE
Q 038407          215 ILPENHFEGPIPMEF-----CQLDSLQILNISDNNISGIYHHAS---ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLI  286 (528)
Q Consensus       215 ~L~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L  286 (528)
                      ++++|.+++.+|..+     ..++.|+.++++.+.+ .++....   ......++|++++|.+....  ....+++|+.|
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  358 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEE
Confidence            888888877777655     4444444444444443 1111111   01122344555555443211  11344455555


Q ss_pred             EccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc----cccccccCcccEE
Q 038407          287 DLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY----TYRGRVISYLSEL  362 (528)
Q Consensus       287 ~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L  362 (528)
                      ++++|.+++..|..+...+....                              +.+..+.+..    ......+++|++|
T Consensus       359 ~l~~n~l~~~~~~~~~~l~~L~~------------------------------L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCSTLKRLQT------------------------------LILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             ECCSSCCCTTTTTTCCSCSSCCE------------------------------EECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             ECCCCccccchhhhhcccCCCCE------------------------------EECCCCCcCCcccchhhhcCCCCCCEE
Confidence            55555554444443333221000                              0000000000    0001225689999


Q ss_pred             ECCCCcCccCCC-hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCC
Q 038407          363 DLSYNKLIGQIP-PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL  441 (528)
Q Consensus       363 ~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  441 (528)
                      ++++|.+++.+| ..+..+++|+.|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|++++|++
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence            999999997455 4588899999999999999877766554  79999999999999 6777777999999999999999


Q ss_pred             ccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          442 SGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       442 ~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ++..+..+..+++|+.+++++|||.|+|++.
T Consensus       486 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             CCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             CCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            9544444888999999999999999998653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.1e-41  Score=340.21  Aligned_cols=365  Identities=17%  Similarity=0.169  Sum_probs=301.8

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCcccc-CcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLF-LLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY   93 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (528)
                      ++|++|+|++|.+++..|.. |.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.. +++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred             CccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence            78999999999998655554 689999999999999997554 678999999999999999998555666655 899999


Q ss_pred             eeccCCcCcccCCc--cccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCC--CCCCEEEc
Q 038407           94 FNISMNAFDSSIPT--SFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL--TNLRRLQL  169 (528)
Q Consensus        94 L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l  169 (528)
                      |++++|.+++..+.  .|.++++|++|++++|.+++..|..++.++++|++|++++|.+++..+..+..+  .+|+.|++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            99999999874444  499999999999999999966677766789999999999999998777777655  78999999


Q ss_pred             cCCcCCccCcc---------cCCCCCCCEEEccCCccCccCCccccCC---CCCCeeecCCceeeccCcccccCCCCCCE
Q 038407          170 DGNHFREILES---------LSKCSSLEGLYLSDNNLSGKIPRWLGNL---SMLQHIILPENHFEGPIPMEFCQLDSLQI  237 (528)
Q Consensus       170 ~~n~~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  237 (528)
                      ++|.+..+++.         +..+++|++|++++|.+.+..+..+...   ++|+.|++++|...+....          
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------  257 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------  257 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence            99999887652         3466899999999999988777766554   8899999999876532111          


Q ss_pred             EEcccCcccccccchh--hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCC
Q 038407          238 LNISDNNISGIYHHAS--ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS  315 (528)
Q Consensus       238 L~L~~n~l~~~~~~~~--~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~  315 (528)
                          .+.+.+.....+  ......+++++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..            
T Consensus       258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------  321 (455)
T 3v47_A          258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------------  321 (455)
T ss_dssp             ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------------
T ss_pred             ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------------
Confidence                111111111111  11123477777777777778888999999999999999998776766654            


Q ss_pred             CCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccc
Q 038407          316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG  395 (528)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  395 (528)
                                                              +++|++|++++|.+.+..|..|..+++|++|+|++|++++
T Consensus       322 ----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          322 ----------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred             ----------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence                                                    3479999999999998888999999999999999999999


Q ss_pred             cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCC
Q 038407          396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE  447 (528)
Q Consensus       396 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  447 (528)
                      ..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++++..|.
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9899999999999999999999987777889999999999999999988874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-40  Score=345.12  Aligned_cols=402  Identities=20%  Similarity=0.203  Sum_probs=219.1

Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCcc-ccCh
Q 038407            4 VAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQG-HIPV   82 (528)
Q Consensus         4 ~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~   82 (528)
                      ++..|.+|.++++|++|++++|++++..|. .|.++++|++|++++|.+++..+..+.++++|++|++++|.+++ .+|.
T Consensus        39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  117 (549)
T 2z81_A           39 TYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS  117 (549)
T ss_dssp             CEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred             CccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence            344455566666666666666666533322 24556666666666666655555555566666666666665552 1222


Q ss_pred             hhhhcCCCCceeeccCCc-CcccCCccccCCCCCCEEEccCCcccc-----------------------cCChhhhhCCC
Q 038407           83 KIGDFLPSLKYFNISMNA-FDSSIPTSFGNMNFLISLDLSNNQLTG-----------------------EIPEHLAMGCV  138 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~~l~  138 (528)
                      .+.. +++|++|++++|. +....+..|.++++|++|++++|.+++                       .+|...+..++
T Consensus       118 ~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  196 (549)
T 2z81_A          118 LFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS  196 (549)
T ss_dssp             SCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred             hhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence            2222 4555555555555 222223445555555555555555543                       33333334566


Q ss_pred             CCCEEEccCCcCcccC---CccCCCCCCCCEEEccCCcCCccC-----cccCCCCCCCEEEccCCccCcc----------
Q 038407          139 DLEYLLLSNNSLEGHL---FPRNFNLTNLRRLQLDGNHFREIL-----ESLSKCSSLEGLYLSDNNLSGK----------  200 (528)
Q Consensus       139 ~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----------  200 (528)
                      +|++|++++|.+++..   ......+++|++|++++|.+.+..     ..+..+++|+.+++++|.+.+.          
T Consensus       197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  276 (549)
T 2z81_A          197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV  276 (549)
T ss_dssp             TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred             cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence            6777777777666421   111123444555555444432110     0112222333333333322110          


Q ss_pred             -------------------------CCccccCCCCCCeeecCCceeeccCcccc-cCCCCCCEEEcccCcccccccch--
Q 038407          201 -------------------------IPRWLGNLSMLQHIILPENHFEGPIPMEF-CQLDSLQILNISDNNISGIYHHA--  252 (528)
Q Consensus       201 -------------------------~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~--  252 (528)
                                               .+..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++.+..+..  
T Consensus       277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence                                     0001112345666666666665 334333 35666666666666665533211  


Q ss_pred             -hhhccccceeeeccCcccccCc--ccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccc
Q 038407          253 -SILSLSKDQLVLAHNNFEGEVP--IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFA  329 (528)
Q Consensus       253 -~~~~~~~~~L~L~~n~l~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (528)
                       ......+++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+...+...                     
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~---------------------  413 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR---------------------  413 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC---------------------
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc---------------------
Confidence             1111233666666666654322  34555666666666666665 3444332221000                     


Q ss_pred             cccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCe
Q 038407          330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS  409 (528)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  409 (528)
                               .+.+..+.+.. ..+..+++|++|++++|++++..    ..+++|++|+|++|+++ .+|. ...+++|++
T Consensus       414 ---------~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~  477 (549)
T 2z81_A          414 ---------FLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV  477 (549)
T ss_dssp             ---------EEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred             ---------EEECCCCCccc-ccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence                     00000000000 00111357999999999998643    57899999999999999 5665 567999999


Q ss_pred             eeCcCCcCcccCccccccCCCCCEEEccCCCCccCCC
Q 038407          410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP  446 (528)
Q Consensus       410 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  446 (528)
                      |+|++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999888889999999999999999987766

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=330.33  Aligned_cols=318  Identities=23%  Similarity=0.224  Sum_probs=155.2

Q ss_pred             EEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCC
Q 038407           44 SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN  123 (528)
Q Consensus        44 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  123 (528)
                      .++.+++.++. +|..+  .+++++|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            44444444442 22222  135555555555555 232222222555555555555555555555555555555555555


Q ss_pred             cccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCC
Q 038407          124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIP  202 (528)
Q Consensus       124 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~  202 (528)
                      .++ .+|...+.++++|++|++++|.++...+..+..+++|++|++++|.+..+.+ .+..+++|++|++++|.+++..+
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            555 4444444455555555555555554444445555555555555555554433 44455555555555555544333


Q ss_pred             ccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCC
Q 038407          203 RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK  282 (528)
Q Consensus       203 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~  282 (528)
                      ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.                        ++.......+
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------------~~~~~~~~~~  225 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT------------------------MTPNCLYGLN  225 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE------------------------ECTTTTTTCC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc------------------------cCcccccCcc
Confidence            3444455555555555555444444444444454444444433221                        1111222235


Q ss_pred             CCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEE
Q 038407          283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSEL  362 (528)
Q Consensus       283 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  362 (528)
                      |+.|++++|.+++..+..+..                                                    +++|++|
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L  253 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRH----------------------------------------------------LVYLRFL  253 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTT----------------------------------------------------CTTCCEE
T ss_pred             ccEEECcCCcccccCHHHhcC----------------------------------------------------ccccCee
Confidence            555555555544211111111                                                    2345555


Q ss_pred             ECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407          363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS  442 (528)
Q Consensus       363 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  442 (528)
                      ++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            55555555444445555555555555555555555555555555555555555555444444555555555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.5e-40  Score=337.83  Aligned_cols=422  Identities=17%  Similarity=0.144  Sum_probs=300.7

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      ++|++++|+++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|++++..|..+.. +++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecC
Confidence            68999999998 7887653   89999999999999888888999999999999999999544555555 8999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC--CEEEccCCcC
Q 038407           98 MNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL--RRLQLDGNHF  174 (528)
Q Consensus        98 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~~  174 (528)
                      +|+++. +|..  .+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++   ..+..+++|  ++|++++|.+
T Consensus        78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             CCceee-cCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            999985 4544  79999999999999984 355555 589999999999999986   456677777  9999999998


Q ss_pred             --Ccc-CcccCCCC-CCCEEEccCCccCccCC-ccccCCCCCCeeecCCce-------eeccCcccccCCCCCCEEEccc
Q 038407          175 --REI-LESLSKCS-SLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENH-------FEGPIPMEFCQLDSLQILNISD  242 (528)
Q Consensus       175 --~~~-~~~~~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~L~~  242 (528)
                        ... +..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              433 33444433 22356777777665443 356778888999988886       665555 678888899999888


Q ss_pred             Ccccccccchhh---hccccceeeeccCcccccCcccc-----cCCCCCCEEEccCCcCCcCCCC-CCcC----Cccccc
Q 038407          243 NNISGIYHHASI---LSLSKDQLVLAHNNFEGEVPIQL-----CQLNKLQLIDLSNNILSGHIPP-CLDN----TTLHES  309 (528)
Q Consensus       243 n~l~~~~~~~~~---~~~~~~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~p~-~~~~----~~~~~~  309 (528)
                      |.+.+.......   .....++|++++|++.+.+|..+     ..+++|+.+++++|.+  .+|. .+..    ..+...
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L  307 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF  307 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence            877654322111   12245888888888888888877     7788888888888877  3441 1100    001111


Q ss_pred             cccCCCCCCCCccccccccccccccccccceeeeeccccc--cccccccCcccEEECCCCcCcc--CCChhhhccccCCE
Q 038407          310 YIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY--TYRGRVISYLSELDLSYNKLIG--QIPPQIGNLTRIQT  385 (528)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~  385 (528)
                      .+..........         .........+.+..+.+..  ......+++|++|++++|++++  .+|..+..+++|++
T Consensus       308 ~l~~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          308 TVSGTRMVHMLC---------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             EEESSCCCCCCC---------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             EcCCCccccccc---------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence            111111000000         0000001111111111111  1111236788999999998885  45567888899999


Q ss_pred             EeCCCccccccCCc-cccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCC
Q 038407          386 LNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNP  464 (528)
Q Consensus       386 L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np  464 (528)
                      |++++|++++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.+++++|.
T Consensus       379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence            99999999874454 578889999999999999877776554  68999999999998 677767788999999999987


Q ss_pred             CC
Q 038407          465 FL  466 (528)
Q Consensus       465 ~~  466 (528)
                      ..
T Consensus       456 l~  457 (520)
T 2z7x_B          456 LK  457 (520)
T ss_dssp             CC
T ss_pred             CC
Confidence            66

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.9e-38  Score=318.51  Aligned_cols=346  Identities=24%  Similarity=0.353  Sum_probs=258.5

Q ss_pred             CCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCc
Q 038407           13 HQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLK   92 (528)
Q Consensus        13 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~   92 (528)
                      .++++++|+++++.+. .+|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++. +.. +++|+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~-l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LAN-LTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTT-CTTCC
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hcC-CCCCC
Confidence            4678999999999887 5775  5789999999999999887654  888999999999999988 4444 444 88999


Q ss_pred             eeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCC
Q 038407           93 YFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN  172 (528)
Q Consensus        93 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  172 (528)
                      +|++++|.+++..+  +.++++|++|++++|.+. .++.  +..+++|++|+++ |.+.+  ...+..+++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~--~~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCC--CGGGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccC--chhhccCCCCCEEECcCC
Confidence            99999999886533  888999999999999988 5554  4578999999996 44443  234788899999999999


Q ss_pred             cCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccch
Q 038407          173 HFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA  252 (528)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  252 (528)
                      .+..++ .+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  
T Consensus       188 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          188 KVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             cCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            888764 47788899999999998876544  67788999999999988754  457788999999999998887654  


Q ss_pred             hhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccc
Q 038407          253 SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK  332 (528)
Q Consensus       253 ~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (528)
                      +.....+++|++++|.+.+..+  +..+++|+.|++++|++.+..+  +.                              
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------------------------------  306 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------------------------------  306 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG------------------------------
T ss_pred             hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc------------------------------
Confidence            2222334777777777765443  6677777777777777654221  11                              


Q ss_pred             ccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeC
Q 038407          333 EKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL  412 (528)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  412 (528)
                                            .+++|++|++++|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++
T Consensus       307 ----------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          307 ----------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA  360 (466)
T ss_dssp             ----------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ----------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence                                  14467777777777765443  56777777777777777754  35677777777777


Q ss_pred             cCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407          413 SYNKLDGKIPLQLVELNTLAVFNVAHNNLSG  443 (528)
Q Consensus       413 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  443 (528)
                      ++|++++..|  +..+++|+.|++++|++++
T Consensus       361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          361 GHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            7777776555  6677777777777777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-38  Score=330.18  Aligned_cols=378  Identities=19%  Similarity=0.175  Sum_probs=259.4

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCcc-ccC
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQG-HIP   81 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~   81 (528)
                      +++..|.+|.++++|++|+|++|++++..|.. |.++++|++|++++|.++. +|..  .+++|++|++++|++++ .+|
T Consensus        64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p  139 (562)
T 3a79_B           64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVC  139 (562)
T ss_dssp             CCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCC
T ss_pred             ccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCch
Confidence            45566689999999999999999998544544 6899999999999999985 4444  89999999999999984 234


Q ss_pred             hhhhhcCCCCceeeccCCcCcccCCccccCCCCC--CEEEccCCcc--cccCChhhhh----------------------
Q 038407           82 VKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL--ISLDLSNNQL--TGEIPEHLAM----------------------  135 (528)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~----------------------  135 (528)
                      ..+.. +++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..                      
T Consensus       140 ~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~  215 (562)
T 3a79_B          140 KEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM  215 (562)
T ss_dssp             GGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE
T ss_pred             Hhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh
Confidence            55655 89999999999999753   45556666  9999999998  6455543321                      


Q ss_pred             ---CCCCCCEEEccCCcCcc----cCCccCCCCCCCCEEEccCCcCCc-----cCcccCCCCCCCEEEccCCccCccCCc
Q 038407          136 ---GCVDLEYLLLSNNSLEG----HLFPRNFNLTNLRRLQLDGNHFRE-----ILESLSKCSSLEGLYLSDNNLSGKIPR  203 (528)
Q Consensus       136 ---~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~  203 (528)
                         .+++|+.+++++|+...    ...+.+..+++|+.+++.++.+..     +++.+ ..++|++|++++|.+.+.+|.
T Consensus       216 ~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~  294 (562)
T 3a79_B          216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDR  294 (562)
T ss_dssp             EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCC
T ss_pred             cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccc
Confidence               22334444444442100    000112222233333322222211     11111 123555666666655544444


Q ss_pred             cc-----cCC--------------------------CCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccch
Q 038407          204 WL-----GNL--------------------------SMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA  252 (528)
Q Consensus       204 ~l-----~~l--------------------------~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  252 (528)
                      .+     ..+                          .+|++|++++|.+....  ....+++|++|++++|++++..+..
T Consensus       295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence            33     112                          34667777777664221  1256788888888888888765554


Q ss_pred             hhhccccceeeeccCccccc--CcccccCCCCCCEEEccCCcCCcCCCCC-CcCCccccccccCCCCCCCCccccccccc
Q 038407          253 SILSLSKDQLVLAHNNFEGE--VPIQLCQLNKLQLIDLSNNILSGHIPPC-LDNTTLHESYIDTSSPESSETSFVDEGFA  329 (528)
Q Consensus       253 ~~~~~~~~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (528)
                      +.....+++|++++|++++.  .|..+..+++|+.|++++|.+++.+|.. +..                          
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--------------------------  426 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--------------------------  426 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC--------------------------
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC--------------------------
Confidence            44444558888888888763  3466788888888888888887645543 221                          


Q ss_pred             cccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCe
Q 038407          330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS  409 (528)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  409 (528)
                                                +++|++|++++|.+++..|..+.  ++|+.|+|++|+++ .+|..+.++++|++
T Consensus       427 --------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~  477 (562)
T 3a79_B          427 --------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE  477 (562)
T ss_dssp             --------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred             --------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence                                      45899999999999876555443  69999999999999 56666679999999


Q ss_pred             eeCcCCcCcccCccccccCCCCCEEEccCCCCccCCC
Q 038407          410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP  446 (528)
Q Consensus       410 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  446 (528)
                      |+|++|+++.+.+..+..+++|+.|++++|++.+..+
T Consensus       478 L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             EECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            9999999995444449999999999999999987554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.8e-37  Score=328.35  Aligned_cols=407  Identities=20%  Similarity=0.163  Sum_probs=264.5

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      +++..+.+|.++++|++|+|++|+++ .+++..|.++++|++|+|++|++++..+..|.++++|++|++++|+++ .++.
T Consensus        64 i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~  141 (635)
T 4g8a_A           64 LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLEN  141 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTT
T ss_pred             CCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCCh
Confidence            34445678999999999999999998 677666899999999999999999888888999999999999999998 6766


Q ss_pred             hhhhcCCCCceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCC----CCEEEccCCcCcccCCcc
Q 038407           83 KIGDFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD----LEYLLLSNNSLEGHLFPR  157 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~  157 (528)
                      ..+..+++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+ ..+.+    ...++++.|.++...+..
T Consensus       142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~  220 (635)
T 4g8a_A          142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGA  220 (635)
T ss_dssp             CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCccc
Confidence            6555589999999999999764 57888999999999999999984333322 22221    224444444333211100


Q ss_pred             --------------------------------------------------------------------------------
Q 038407          158 --------------------------------------------------------------------------------  157 (528)
Q Consensus       158 --------------------------------------------------------------------------------  157 (528)
                                                                                                      
T Consensus       221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  300 (635)
T 4g8a_A          221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID  300 (635)
T ss_dssp             TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred             ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence                                                                                            


Q ss_pred             -CCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccC-------------------CccccCCCCCCeeecC
Q 038407          158 -NFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI-------------------PRWLGNLSMLQHIILP  217 (528)
Q Consensus       158 -~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------~~~l~~l~~L~~L~L~  217 (528)
                       +....+++.+.+.++.+..+. .+.....++.|++.+|.+....                   +.....+++|+.++++
T Consensus       301 ~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls  379 (635)
T 4g8a_A          301 LFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS  379 (635)
T ss_dssp             TTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECC
T ss_pred             hhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhh
Confidence             001112222222222222211 1222334444444444332111                   1122345667777777


Q ss_pred             Cceeec--cCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC-cccccCCCCCCEEEccCCcCC
Q 038407          218 ENHFEG--PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV-PIQLCQLNKLQLIDLSNNILS  294 (528)
Q Consensus       218 ~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~  294 (528)
                      +|.+..  ..+..+..+.+|+.+++..+.+...... +......+.+++..+...... ...+..+++++.++++.|.+.
T Consensus       380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~  458 (635)
T 4g8a_A          380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  458 (635)
T ss_dssp             SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            776642  2334445556666666666655443221 222233355555555444332 234455555555555555555


Q ss_pred             cCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccc---cccccccccCcccEEECCCCcCcc
Q 038407          295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI---AYTYRGRVISYLSELDLSYNKLIG  371 (528)
Q Consensus       295 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~  371 (528)
                      +..+..+........                              +.+..+..   ........+++|++|+|++|++++
T Consensus       459 ~~~~~~~~~~~~L~~------------------------------L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          459 VAFNGIFNGLSSLEV------------------------------LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             ECCTTTTTTCTTCCE------------------------------EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             cccccccccchhhhh------------------------------hhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence            444433332221000                              00000000   000011225689999999999999


Q ss_pred             CCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC-CCCCEEEccCCCCccC
Q 038407          372 QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL-NTLAVFNVAHNNLSGK  444 (528)
Q Consensus       372 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~  444 (528)
                      ..|..|.++++|++|+|++|++++..|..|+++++|++|||++|++++..|..+..+ ++|++|++++|++...
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999998 6899999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.4e-37  Score=312.92  Aligned_cols=356  Identities=25%  Similarity=0.348  Sum_probs=298.3

Q ss_pred             CcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCccc
Q 038407           25 LNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSS  104 (528)
Q Consensus        25 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~  104 (528)
                      ..+.+.++.   ..++++++|+++++.+... + .+..+++|++|++++|.++ .++. +.. +++|++|++++|.+.+.
T Consensus        34 ~~~~~~i~~---~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~-~~~-l~~L~~L~l~~n~l~~~  105 (466)
T 1o6v_A           34 TNVTDTVSQ---TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQIADI  105 (466)
T ss_dssp             SSTTSEECH---HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCC
T ss_pred             cccccccCh---hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh-hhc-cccCCEEECCCCccccC
Confidence            334444443   3567899999999998753 3 4788999999999999998 5554 444 89999999999999866


Q ss_pred             CCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCC
Q 038407          105 IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKC  184 (528)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l  184 (528)
                      .+  +.++++|++|++++|.++ .++.  +..+++|++|++++|.+++  .+.+..+++|++|+++ +.+...+ .+..+
T Consensus       106 ~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l  176 (466)
T 1o6v_A          106 TP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK-PLANL  176 (466)
T ss_dssp             GG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEE-ESCCCCG-GGTTC
T ss_pred             hh--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCC--ChhhccCCcccEeecC-CcccCch-hhccC
Confidence            54  999999999999999998 6665  4689999999999999986  3468899999999996 5555554 48899


Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeee
Q 038407          185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVL  264 (528)
Q Consensus       185 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L  264 (528)
                      ++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|++.++.  .......+++|++
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEEC
Confidence            9999999999998753  458899999999999999987655  778999999999999998763  2333344599999


Q ss_pred             ccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeee
Q 038407          265 AHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT  344 (528)
Q Consensus       265 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (528)
                      ++|.+.+..+  +..+++|+.|++++|.+++..+  +..                                         
T Consensus       251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~-----------------------------------------  285 (466)
T 1o6v_A          251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG-----------------------------------------  285 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT-----------------------------------------
T ss_pred             CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC-----------------------------------------
Confidence            9999987655  8899999999999999875322  211                                         


Q ss_pred             ccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407          345 KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ  424 (528)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  424 (528)
                                 +++|++|++++|++.+..+  +..+++|+.|++++|++++..|  +..+++|++|++++|++++.  ..
T Consensus       286 -----------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          286 -----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             -----------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             -----------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence                       4589999999999986533  8899999999999999997765  78999999999999999965  47


Q ss_pred             cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      +..+++|+.|++++|++++..|  +..+++|+.+++++|+|..
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            8999999999999999998887  6789999999999999886

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-37  Score=312.46  Aligned_cols=358  Identities=17%  Similarity=0.125  Sum_probs=291.4

Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407            3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus         3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      ..+..+..++++++|++|++++|.+++ +|.  +..+++|++|++++|.+++.   .+..+++|++|++++|.++ .++ 
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~-~~~-  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLD-  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC-
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCc-eee-
Confidence            445566788999999999999999984 563  68999999999999999875   3889999999999999998 454 


Q ss_pred             hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407           83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT  162 (528)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  162 (528)
                       +.. +++|++|++++|++++. +  +..+++|++|++++|+++ .++   +..+++|++|++++|...+..  .+..++
T Consensus       102 -~~~-l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          102 -VTP-LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             -CTT-CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             -cCC-CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCC
Confidence             444 88999999999999864 3  889999999999999998 455   357899999999999655433  577899


Q ss_pred             CCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEccc
Q 038407          163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD  242 (528)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  242 (528)
                      +|++|++++|.++.++  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++
T Consensus       171 ~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          171 QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             TCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             cCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            9999999999999976  78899999999999999864   48889999999999999997 45  78999999999999


Q ss_pred             Ccccccccchhhhcc-------ccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCC
Q 038407          243 NNISGIYHHASILSL-------SKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS  315 (528)
Q Consensus       243 n~l~~~~~~~~~~~~-------~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~  315 (528)
                      |+++++.........       ..+.+++++|.+.+.+|  +..+++|+.|++++|...+.+|.........        
T Consensus       243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L--------  312 (457)
T 3bz5_A          243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL--------  312 (457)
T ss_dssp             SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC--------
T ss_pred             CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe--------
Confidence            999987643221111       23677888888777766  5678999999999998877666432222100        


Q ss_pred             CCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccc
Q 038407          316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG  395 (528)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  395 (528)
                                               .           ....++|++|++++|++++. +  +..+++|+.|++++|++++
T Consensus       313 -------------------------~-----------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          313 -------------------------D-----------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             -------------------------C-----------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             -------------------------c-----------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence                                     0           01145799999999999974 3  8889999999999999985


Q ss_pred             cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCC
Q 038407          396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT  449 (528)
Q Consensus       396 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~  449 (528)
                              ++.|+.|++++|++.+.     ..+..|..+++++|+++|.+|..+
T Consensus       354 --------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          354 --------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             --------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             --------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence                    35677888999999865     245568889999999999999754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.2e-38  Score=318.93  Aligned_cols=319  Identities=20%  Similarity=0.181  Sum_probs=162.5

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      +.++.++++++ .+|..+   .+++++|+|++|.+++..+..|.++++|++|++++|.+++..|..+.. +++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence            34555555444 444432   245555555555555555555555555555555555555322333332 5555555555


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc
Q 038407           98 MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI  177 (528)
Q Consensus        98 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  177 (528)
                      +|.++...+..|.++++|++|++++|.+. .++...+..+++|++|++++|.++...+..+.++++|++|++++|.+..+
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            55555444444555555555555555555 23222334555555555555555554444555555555555555555555


Q ss_pred             Cc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhc
Q 038407          178 LE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS  256 (528)
Q Consensus       178 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  256 (528)
                      ++ .+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++.......+|+.|++++|+++++        
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--------  239 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV--------  239 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC--------
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc--------
Confidence            44 345555555555555555544444555555555555555544444443333334555555555444322        


Q ss_pred             cccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccc
Q 038407          257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKI  336 (528)
Q Consensus       257 ~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (528)
                                      .+..+..+++|+.|++++|.+++..+..+..                                 
T Consensus       240 ----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------  270 (477)
T 2id5_A          240 ----------------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------------------------------  270 (477)
T ss_dssp             ----------------CHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred             ----------------CHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence                            1123445555555555555554333322222                                 


Q ss_pred             ccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCc
Q 038407          337 QETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK  416 (528)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  416 (528)
                                         +++|++|++++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|.
T Consensus       271 -------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          271 -------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             -------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             -------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence                               2245555555555555555555555555555555555555444455555555555555555


Q ss_pred             Cc
Q 038407          417 LD  418 (528)
Q Consensus       417 l~  418 (528)
                      +.
T Consensus       332 l~  333 (477)
T 2id5_A          332 LA  333 (477)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-37  Score=312.41  Aligned_cols=205  Identities=25%  Similarity=0.243  Sum_probs=81.2

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCC-------------CEEEccCCcCccccC
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL-------------MLLDVSNNNLQGHIP   81 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L-------------~~L~ls~n~l~~~~~   81 (528)
                      ++|++|++++|++ +.+|..+ +++++|++|++++|.+.+..|..++.+++|             ++|++++|.++ .+|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             ccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            4555555555555 3555442 455555555555555555555555444432             55555555544 333


Q ss_pred             hhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCC
Q 038407           82 VKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL  161 (528)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  161 (528)
                      .    ..++|++|++++|.+++ +|..   +++|++|++++|+++ .++..    .++|++|++++|.+++ ++ .+.++
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            2    12345555555555543 2322   244555555555444 23221    1345555555554443 22 34444


Q ss_pred             CCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcc
Q 038407          162 TNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS  241 (528)
Q Consensus       162 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  241 (528)
                      ++|++|++++|.+.+++..+   ++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|..   .++|++|+++
T Consensus       153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG  223 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence            55555555555444433221   244555555554443 23 34444445555555444442 2211   1344444444


Q ss_pred             cCccc
Q 038407          242 DNNIS  246 (528)
Q Consensus       242 ~n~l~  246 (528)
                      +|.+.
T Consensus       224 ~n~l~  228 (454)
T 1jl5_A          224 NNILE  228 (454)
T ss_dssp             SSCCS
T ss_pred             CCcCC
Confidence            44444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.6e-37  Score=309.90  Aligned_cols=255  Identities=24%  Similarity=0.238  Sum_probs=202.9

Q ss_pred             ccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCC-------------CCEEEccCCCCccccCcCccCCCCCCEEEc
Q 038407            5 AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTK-------------LESNFLLNNSLPGLFLLPIHCHKSLMLLDV   71 (528)
Q Consensus         5 ~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~-------------L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l   71 (528)
                      |.+|++++++++|++|++++|.+.+.+|..+ +++++             +++|++++|.+++. |.   ..++|++|++
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l   98 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLESLVA   98 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCSEEEC
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCCEEEc
Confidence            8899999999999999999999998999874 56665             59999999999864 32   2378999999


Q ss_pred             cCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCc
Q 038407           72 SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLE  151 (528)
Q Consensus        72 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  151 (528)
                      ++|.++ .+|..    .++|++|++++|++++. +..   .++|++|++++|+++ .+|.  +.++++|++|++++|+++
T Consensus        99 ~~n~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A           99 SCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             CSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCS
T ss_pred             cCCcCC-ccccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCc
Confidence            999999 47743    47999999999999853 322   268999999999999 6883  568999999999999998


Q ss_pred             ccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccC
Q 038407          152 GHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQ  231 (528)
Q Consensus       152 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~  231 (528)
                      + ++..   ..+|++|++++|.+..++ .+..+++|++|++++|.+.+ +|..   .++|++|++++|.++ .+| .+..
T Consensus       167 ~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~  235 (454)
T 1jl5_A          167 K-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQN  235 (454)
T ss_dssp             C-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTT
T ss_pred             c-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCC
Confidence            6 4433   359999999999999976 68999999999999999985 4443   358999999999998 566 4899


Q ss_pred             CCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCc
Q 038407          232 LDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG  295 (528)
Q Consensus       232 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  295 (528)
                      +++|++|++++|++++++..    ....++|++++|++++ +|..   .++|+.|++++|.+++
T Consensus       236 l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             CCCCCEEECCCCcCCccccc----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            99999999999999886432    2455999999999986 4433   4889999999999885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.6e-37  Score=302.63  Aligned_cols=312  Identities=21%  Similarity=0.246  Sum_probs=234.8

Q ss_pred             CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407           62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE  141 (528)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  141 (528)
                      .++++++|+++++.++ .+|..++..+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            3577888888888877 677776666788888888888888777778888888888888888887 55555556788888


Q ss_pred             EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCce
Q 038407          142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH  220 (528)
Q Consensus       142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  220 (528)
                      +|++++|.++......+..+++|++|++++|.+..+++ .+..+++|++|++++|.+++.   .+..+++|++|++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            88888888885444446778888888888888887765 577888888888888888753   35567888888888888


Q ss_pred             eeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC
Q 038407          221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC  300 (528)
Q Consensus       221 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~  300 (528)
                      +++.     ...++|+.|++++|.+..+...                           ..++|+.|++++|.+++.  +.
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~n~l~~~--~~  243 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSINVVRGP---------------------------VNVELTILKLQHNNLTDT--AW  243 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCCEEECC---------------------------CCSSCCEEECCSSCCCCC--GG
T ss_pred             cccc-----CCCCcceEEECCCCeeeecccc---------------------------ccccccEEECCCCCCccc--HH
Confidence            7632     3446788888888877654211                           135788888888877632  11


Q ss_pred             CcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcc
Q 038407          301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNL  380 (528)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  380 (528)
                      +.                                                    .+++|++|++++|.+.+..|..|..+
T Consensus       244 l~----------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          244 LL----------------------------------------------------NYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             GG----------------------------------------------------GCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             Hc----------------------------------------------------CCCCccEEECCCCcCCCcChhHcccc
Confidence            11                                                    14578888888888887778888888


Q ss_pred             ccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcc
Q 038407          381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY  460 (528)
Q Consensus       381 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l  460 (528)
                      ++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. |  +..+++|+.+++
T Consensus       272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence            888888888888884 4556677888888888888887 4566777888888888888888754 3  446788888888


Q ss_pred             cCCCCCCCC
Q 038407          461 EGNPFLCGL  469 (528)
Q Consensus       461 ~~Np~~c~~  469 (528)
                      ++|||.|+|
T Consensus       347 ~~N~~~~~~  355 (390)
T 3o6n_A          347 SHNDWDCNS  355 (390)
T ss_dssp             CSSCEEHHH
T ss_pred             CCCCccchh
Confidence            888888875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-36  Score=297.84  Aligned_cols=337  Identities=21%  Similarity=0.223  Sum_probs=283.8

Q ss_pred             cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCE
Q 038407           38 NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLIS  117 (528)
Q Consensus        38 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  117 (528)
                      .++++++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..|..|.++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            5789999999999998776666889999999999999998 555544445899999999999999888899999999999


Q ss_pred             EEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCcc
Q 038407          118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL  197 (528)
Q Consensus       118 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l  197 (528)
                      |++++|.++ .+|..++.++++|++|++++|.+++..+..+..+++|++|++++|.+..++  +..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence            999999999 889888778999999999999999877778999999999999999998874  56789999999999988


Q ss_pred             CccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccc
Q 038407          198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL  277 (528)
Q Consensus       198 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l  277 (528)
                      .+     +...+.|++|++++|.++.. +..  ..++|+.|++++|.+++.                          ..+
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--------------------------~~l  244 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--------------------------AWL  244 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--------------------------GGG
T ss_pred             cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--------------------------HHH
Confidence            73     34557899999999999855 332  357899999999988643                          246


Q ss_pred             cCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccC
Q 038407          278 CQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS  357 (528)
Q Consensus       278 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (528)
                      ..+++|+.|++++|.+.+..|..+..                                                    ++
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------------------------------l~  272 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVK----------------------------------------------------MQ  272 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTT----------------------------------------------------CS
T ss_pred             cCCCCccEEECCCCcCCCcChhHccc----------------------------------------------------cc
Confidence            77899999999999998765655443                                                    45


Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      +|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|++|+++
T Consensus       273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~  347 (390)
T 3o6n_A          273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  347 (390)
T ss_dssp             SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence            89999999999985 5666788999999999999999 5677788999999999999999854 3  6788999999999


Q ss_pred             CCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      +|++.+....  .-+..+....+.+++..|.++.
T Consensus       348 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~  379 (390)
T 3o6n_A          348 HNDWDCNSLR--ALFRNVARPAVDDADQHCKIDY  379 (390)
T ss_dssp             SSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTTC
T ss_pred             CCCccchhHH--HHHHHHHhhcccccCceecccc
Confidence            9999864222  1345666677888888887643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1e-34  Score=283.45  Aligned_cols=306  Identities=19%  Similarity=0.288  Sum_probs=210.0

Q ss_pred             hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407           37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI  116 (528)
Q Consensus        37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  116 (528)
                      ..+++|++|++++|.+...  ..+..+++|++|++++|.++ .++. + ..+++|++|++++|.++..  ..+.++++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~-~-~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT-DISP-L-SNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc-cchh-h-hcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            4566667777766666543  23566667777777777666 4443 3 3366777777777766642  3566777777


Q ss_pred             EEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCc
Q 038407          117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN  196 (528)
Q Consensus       117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~  196 (528)
                      +|++++|.+. .++.  +..+++|++|++++|..... .+.+..+++|++|++++|.+..+++ +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred             EEECcCCccc-Cchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence            7777777776 4544  34677777777777754432 3346677777777777777776654 6677778888888887


Q ss_pred             cCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCccc
Q 038407          197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ  276 (528)
Q Consensus       197 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~  276 (528)
                      +.+. +. +..+++|+.+++++|.+++..+  +..+++|++|++++|++++..                         . 
T Consensus       189 l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------------------------~-  238 (347)
T 4fmz_A          189 IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------------------------P-  238 (347)
T ss_dssp             CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------------------------G-
T ss_pred             cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-------------------------c-
Confidence            7643 22 6777888888888888775433  677788888888888776431                         1 


Q ss_pred             ccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccccccc
Q 038407          277 LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI  356 (528)
Q Consensus       277 l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (528)
                      +..+++|++|++++|.+++. + .+.                                                    .+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~-~-~~~----------------------------------------------------~l  264 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI-N-AVK----------------------------------------------------DL  264 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-GGT----------------------------------------------------TC
T ss_pred             hhcCCCCCEEECCCCccCCC-h-hHh----------------------------------------------------cC
Confidence            55677788888888776531 1 111                                                    14


Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      ++|++|++++|.+++.  ..+..+++|+.|++++|++++..+..++++++|++|++++|++++..|  +..+++|++|++
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF  340 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence            5788888888887753  457888888888888888888888888888888888888888886655  778888888888


Q ss_pred             cCCCCc
Q 038407          437 AHNNLS  442 (528)
Q Consensus       437 s~N~l~  442 (528)
                      ++|+++
T Consensus       341 ~~N~i~  346 (347)
T 4fmz_A          341 ANQVIK  346 (347)
T ss_dssp             SCC---
T ss_pred             hhhccc
Confidence            888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-35  Score=310.02  Aligned_cols=311  Identities=21%  Similarity=0.252  Sum_probs=199.8

Q ss_pred             CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407           63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  142 (528)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            467788888888777 677666666778888888888888777778888888888888888887 555555567888888


Q ss_pred             EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee
Q 038407          143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF  221 (528)
Q Consensus       143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  221 (528)
                      |++++|.++...+..|..+++|++|++++|.+..+++ .+..+++|++|++++|.+.+.   .+..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            8888888876544456778888888888888877766 677788888888888887754   245577788888888877


Q ss_pred             eccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCC
Q 038407          222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL  301 (528)
Q Consensus       222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~  301 (528)
                      ++     +...++|+.|++++|.+..+....                           .++|+.|++++|.+++.  ..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~~--~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTDT--AWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCCC--GGG
T ss_pred             cc-----ccCCchhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCCC--hhh
Confidence            63     234567888888888776543221                           13455555555555421  111


Q ss_pred             cCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccc
Q 038407          302 DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLT  381 (528)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  381 (528)
                      .                                                    .+++|+.|++++|.+.+..|..|..++
T Consensus       251 ~----------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          251 L----------------------------------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             G----------------------------------------------------GCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             c----------------------------------------------------cCCCCCEEECCCCccCCCCHHHhcCcc
Confidence            1                                                    133455555555555555555555555


Q ss_pred             cCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCccc
Q 038407          382 RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYE  461 (528)
Q Consensus       382 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~  461 (528)
                      +|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..   +..+++|+.++++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence            55555555555553 3344445555555555555555 34444555555555555555555332   2244555555555


Q ss_pred             CCCCCCCC
Q 038407          462 GNPFLCGL  469 (528)
Q Consensus       462 ~Np~~c~~  469 (528)
                      +|||.|+|
T Consensus       354 ~N~~~~~~  361 (597)
T 3oja_B          354 HNDWDCNS  361 (597)
T ss_dssp             SSCEEHHH
T ss_pred             CCCCCChh
Confidence            55555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.6e-35  Score=306.12  Aligned_cols=336  Identities=21%  Similarity=0.220  Sum_probs=284.6

Q ss_pred             cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCE
Q 038407           38 NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLIS  117 (528)
Q Consensus        38 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  117 (528)
                      .+.+++.+++++|.+....+..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..|..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            46899999999999988777778899999999999999994 44434444899999999999999988899999999999


Q ss_pred             EEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCcc
Q 038407          118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL  197 (528)
Q Consensus       118 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l  197 (528)
                      |++++|.++ .+|..++.++++|++|++++|.+++..+..+..+++|++|++++|.+..++  +..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence            999999999 888888778999999999999999888888999999999999999999874  56689999999999988


Q ss_pred             CccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccc
Q 038407          198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL  277 (528)
Q Consensus       198 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l  277 (528)
                      .+     +...+.|+.|++++|.++...+..   .++|+.|++++|.+++.                          ..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--------------------------~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--------------------------AWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--------------------------GGG
T ss_pred             cc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--------------------------hhh
Confidence            74     345678999999999998543322   36899999999988643                          346


Q ss_pred             cCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccC
Q 038407          278 CQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS  357 (528)
Q Consensus       278 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (528)
                      ..+++|+.|++++|.+.+..|..+..                                                    ++
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------------l~  278 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVK----------------------------------------------------MQ  278 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTT----------------------------------------------------CS
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcC----------------------------------------------------cc
Confidence            78899999999999998776665544                                                    45


Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      +|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. +  +..+++|+.|+++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence            89999999999985 5667788999999999999999 6777889999999999999999865 3  6778999999999


Q ss_pred             CCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      +|++.+....  ..+..+....+.+++..|+.+
T Consensus       354 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          354 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            9999864322  134556666788899899764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.1e-34  Score=280.03  Aligned_cols=306  Identities=24%  Similarity=0.365  Sum_probs=233.1

Q ss_pred             ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCC
Q 038407           60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD  139 (528)
Q Consensus        60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  139 (528)
                      +..+++|++|+++++.+. .++. +.. +++|++|++++|.+++..+  +.++++|++|++++|.++ .++.  +.++++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             chhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence            446677888888888777 5543 333 7788888888888775433  777888888888888777 5542  346778


Q ss_pred             CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCc
Q 038407          140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN  219 (528)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  219 (528)
                      |++|++++|.+++.  +.+..+++|++|++++|......+.+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       112 L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          112 LRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             CSEEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CCEEECcCCcccCc--hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            88888888877752  22667777888888777555555557777777777777777764322  667777777777777


Q ss_pred             eeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCC
Q 038407          220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP  299 (528)
Q Consensus       220 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~  299 (528)
                      .+.+..+  +..+++|+.+++++|.+.+.                        .+  +..+++|+.|++++|.+++..+ 
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDI------------------------TP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCC------------------------GG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ccccccc--ccCCCccceeecccCCCCCC------------------------ch--hhcCCcCCEEEccCCccCCCcc-
Confidence            7764332  66677777777777766543                        12  6678999999999999874322 


Q ss_pred             CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhc
Q 038407          300 CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGN  379 (528)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  379 (528)
                       +.                                                    .+++|++|++++|.+++.  ..+..
T Consensus       239 -~~----------------------------------------------------~l~~L~~L~l~~n~l~~~--~~~~~  263 (347)
T 4fmz_A          239 -LA----------------------------------------------------NLSQLTWLEIGTNQISDI--NAVKD  263 (347)
T ss_dssp             -GT----------------------------------------------------TCTTCCEEECCSSCCCCC--GGGTT
T ss_pred             -hh----------------------------------------------------cCCCCCEEECCCCccCCC--hhHhc
Confidence             21                                                    156899999999999854  57899


Q ss_pred             cccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCc
Q 038407          380 LTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS  459 (528)
Q Consensus       380 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~  459 (528)
                      +++|+.|++++|++++.  ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+.++
T Consensus       264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence            99999999999999965  468999999999999999999999999999999999999999998777  67899999999


Q ss_pred             ccCCCC
Q 038407          460 YEGNPF  465 (528)
Q Consensus       460 l~~Np~  465 (528)
                      +++|+.
T Consensus       340 l~~N~i  345 (347)
T 4fmz_A          340 FANQVI  345 (347)
T ss_dssp             SSCC--
T ss_pred             hhhhcc
Confidence            999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2e-34  Score=290.14  Aligned_cols=341  Identities=18%  Similarity=0.172  Sum_probs=243.1

Q ss_pred             hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCC
Q 038407           36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL  115 (528)
Q Consensus        36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  115 (528)
                      +.++++|++|++++|.+++. | .+..+++|++|++++|.++ .++  +.. +++|++|++++|.+++. +  ++++++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~~-l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LSQ-NTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CTT-CTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--ccc-CCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            57899999999999999875 4 6889999999999999998 455  444 88999999999999865 3  8899999


Q ss_pred             CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc-CCccCcccCCCCCCCEEEccC
Q 038407          116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH-FREILESLSKCSSLEGLYLSD  194 (528)
Q Consensus       116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~L~~  194 (528)
                      ++|++++|+++ .++   +..+++|++|++++|++++.   .+..+++|++|++++|. +..+  .+..+++|++|++++
T Consensus       109 ~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          109 TYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            99999999998 565   45789999999999999873   37789999999999995 4443  577889999999999


Q ss_pred             CccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCc
Q 038407          195 NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVP  274 (528)
Q Consensus       195 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~  274 (528)
                      |.+++ +|  +..+++|++|++++|.+++.   .+..+++|+.|++++|++++++   ......+++|++++|++++.. 
T Consensus       180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~-  249 (457)
T 3bz5_A          180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD-  249 (457)
T ss_dssp             SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred             Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC-
Confidence            99986 44  78899999999999999865   3788999999999999998863   223334488888888887754 


Q ss_pred             ccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccccc
Q 038407          275 IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR  354 (528)
Q Consensus       275 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (528)
                        +..+++|+.|++++|.+...--.   .....                              .           .....
T Consensus       250 --~~~l~~L~~L~l~~n~L~~L~l~---~n~~~------------------------------~-----------~~~~~  283 (457)
T 3bz5_A          250 --VSTLSKLTTLHCIQTDLLEIDLT---HNTQL------------------------------I-----------YFQAE  283 (457)
T ss_dssp             --CTTCTTCCEEECTTCCCSCCCCT---TCTTC------------------------------C-----------EEECT
T ss_pred             --HHHCCCCCEEeccCCCCCEEECC---CCccC------------------------------C-----------ccccc
Confidence              34566677776666654311000   00000                              0           00001


Q ss_pred             ccCcccEEECCCCcCccCCCh--------hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccc
Q 038407          355 VISYLSELDLSYNKLIGQIPP--------QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLV  426 (528)
Q Consensus       355 ~~~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  426 (528)
                      .+++|+.|++++|...+.+|.        .+.++++|+.|++++|++++. +  ++++++|+.|++++|++++       
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------  353 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------  353 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred             ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence            145677777777765444332        134455666666666666653 2  6666666666666666663       


Q ss_pred             cCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407          427 ELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       427 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                       ++.|..|++++|.+.+.     .++..++.++++.|.+.
T Consensus       354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT  387 (457)
T ss_dssp             -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred             -ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence             23455556666666654     24455666777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.8e-35  Score=281.35  Aligned_cols=258  Identities=31%  Similarity=0.495  Sum_probs=216.4

Q ss_pred             CCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccC-CcCCc-cCcccCCCCCCCEEEccCCccCccCCccccCCCCCCe
Q 038407          138 VDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDG-NHFRE-ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH  213 (528)
Q Consensus       138 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  213 (528)
                      .++++|++++|.+++  .++..+..+++|++|++++ |.+.+ ++..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467888888888877  6777788888888888884 66663 4447777888888888888887777777888888888


Q ss_pred             eecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCC-CCCEEEccCCc
Q 038407          214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN-KLQLIDLSNNI  292 (528)
Q Consensus       214 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~  292 (528)
                      |++++|.+++..|..+..+++|++|++++|++++                        .+|..+..++ +|+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------------~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------------AIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------------ECCGGGGCCCTTCCEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------------cCCHHHhhhhhcCcEEECcCCe
Confidence            8888888887777777778888888877776653                        4556677787 89999999999


Q ss_pred             CCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC
Q 038407          293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ  372 (528)
Q Consensus       293 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  372 (528)
                      +++.+|..+...                                                     .|++|++++|.+++.
T Consensus       186 l~~~~~~~~~~l-----------------------------------------------------~L~~L~Ls~N~l~~~  212 (313)
T 1ogq_A          186 LTGKIPPTFANL-----------------------------------------------------NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEEECCGGGGGC-----------------------------------------------------CCSEEECCSSEEEEC
T ss_pred             eeccCChHHhCC-----------------------------------------------------cccEEECcCCcccCc
Confidence            987777655432                                                     289999999999988


Q ss_pred             CChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCccc
Q 038407          373 IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQF  452 (528)
Q Consensus       373 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~  452 (528)
                      .|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|.. .++
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence            999999999999999999999976665 889999999999999999999999999999999999999999999987 689


Q ss_pred             CCCCcCcccCCCCCCCCCCCCCC
Q 038407          453 ATFNESSYEGNPFLCGLPLPKSC  475 (528)
Q Consensus       453 ~~l~~l~l~~Np~~c~~~l~~~c  475 (528)
                      ++|+.+++.+||+.|+.|++ .|
T Consensus       291 ~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999998876 46

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=3.6e-37  Score=313.05  Aligned_cols=383  Identities=15%  Similarity=0.093  Sum_probs=274.7

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCccccChhhhhcCC
Q 038407           14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP   89 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~   89 (528)
                      .++|++|++++|++++.....++..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+...++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            357899999999998555555578999999999999998853    4567788899999999999998555556666566


Q ss_pred             ----CCceeeccCCcCcc----cCCccccCCCCCCEEEccCCcccccCChhhh----hCCCCCCEEEccCCcCcccC---
Q 038407           90 ----SLKYFNISMNAFDS----SIPTSFGNMNFLISLDLSNNQLTGEIPEHLA----MGCVDLEYLLLSNNSLEGHL---  154 (528)
Q Consensus        90 ----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~---  154 (528)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.    ...++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                69999999999984    4578889999999999999998743333332    23567999999999888633   


Q ss_pred             -CccCCCCCCCCEEEccCCcCCccCc-ccC-----CCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeec
Q 038407          155 -FPRNFNLTNLRRLQLDGNHFREILE-SLS-----KCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       155 -~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                       +..+..+++|++|++++|.+..... .+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             3445567889999999988765422 121     356888888888888753    45666778888888888888765


Q ss_pred             cC-----cccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          224 PI-----PMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       224 ~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                      ..     +..+..+++|++|++++|.+++....                    .++..+..+++|++|++++|.+.+..+
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHH
Confidence            42     22233578888888888877643211                    134456678888999998887753211


Q ss_pred             CCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC----CC
Q 038407          299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ----IP  374 (528)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~  374 (528)
                      ..+...-                                               ....++|++|++++|.+++.    ++
T Consensus       302 ~~l~~~l-----------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          302 RLLCETL-----------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             HHHHHHH-----------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             HHHHHHh-----------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence            1110000                                               00124788999999988755    45


Q ss_pred             hhhhccccCCEEeCCCccccccCCccccC-----CCCCCeeeCcCCcCcc----cCccccccCCCCCEEEccCCCCccC-
Q 038407          375 PQIGNLTRIQTLNLSYNNLTGSIPSTFSN-----LKHIKSLDLSYNKLDG----KIPLQLVELNTLAVFNVAHNNLSGK-  444 (528)
Q Consensus       375 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~ls~N~l~~~-  444 (528)
                      ..+..+++|++|++++|.+++..+..+..     .++|++|+|++|++++    .+|..+..+++|++|++++|+++.. 
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence            66777889999999999888654444432     6789999999999885    6777888889999999999988753 


Q ss_pred             -------CCCCCcccCCCCcCcccCCCCC
Q 038407          445 -------IPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       445 -------~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                             +|.   ...+++.+.+.++.+.
T Consensus       415 ~~~l~~~l~~---~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          415 ILQLVESVRQ---PGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHTS---TTCCCCEEECTTCCCC
T ss_pred             HHHHHHHhcc---CCcchhheeecccccC
Confidence                   222   2235666666666544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=9.6e-33  Score=267.52  Aligned_cols=288  Identities=23%  Similarity=0.291  Sum_probs=148.3

Q ss_pred             CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407           65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL  144 (528)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  144 (528)
                      +++.++++++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            5666666666665 555544   246666666666666555556666666666666666665 33222233555555555


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec-
Q 038407          145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-  223 (528)
Q Consensus       145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-  223 (528)
                      +++|.++. ++..+.  ++|++|++++|.+..+++                       ..+..+++|++|++++|.++. 
T Consensus       109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPK-----------------------GVFSGLRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCS-----------------------GGGSSCSSCCEEECCSCCCBGG
T ss_pred             CCCCcCCc-cCcccc--ccCCEEECCCCccCccCH-----------------------hHhCCCccCCEEECCCCccccC
Confidence            55555552 222222  444555555554444433                       334444444444444444431 


Q ss_pred             -cCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCc
Q 038407          224 -PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD  302 (528)
Q Consensus       224 -~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~  302 (528)
                       ..+..+..+ +|+.|++++|++++++....   ..+++|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence             333344444 45555555555444322110   1123333344444444444566666666666666666543333322


Q ss_pred             CCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcccc
Q 038407          303 NTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTR  382 (528)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  382 (528)
                      .                                                    +++|++|++++|+++ .+|..+..+++
T Consensus       239 ~----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          239 F----------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             G----------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             C----------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCcc
Confidence            2                                                    235666666666665 45555666666


Q ss_pred             CCEEeCCCccccccCCccccC------CCCCCeeeCcCCcCc--ccCccccccCCCCCEEEccCCC
Q 038407          383 IQTLNLSYNNLTGSIPSTFSN------LKHIKSLDLSYNKLD--GKIPLQLVELNTLAVFNVAHNN  440 (528)
Q Consensus       383 L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~ls~N~  440 (528)
                      |+.|++++|++++..+..|..      .++|+.|++++|.+.  ...|..|..+++|+.+++++|+
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            666666666666555555543      245566666666655  4455556666666666666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.1e-32  Score=265.10  Aligned_cols=245  Identities=23%  Similarity=0.250  Sum_probs=121.0

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      ++++++++++.++ .+|..+   .++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence            4555555555554 455432   245555555555555554555555555555555555555222333322 45555555


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccCCc
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDGNH  173 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  173 (528)
                      +++|+++. +|..+.  ++|++|++++|.++ .++...+.++++|++|++++|.++.  ..+..+..+ +|++|++++|.
T Consensus       109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             CCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            55555542 232222  45555555555555 4444444455555555555555532  233333333 55555555555


Q ss_pred             CCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407          174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS  253 (528)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (528)
                      +..++..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++       
T Consensus       184 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------  254 (332)
T 2ft3_A          184 LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------  254 (332)
T ss_dssp             CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-------
T ss_pred             CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-------
Confidence            554444322  34555555555554444444444555555555555554444444444444544444444443       


Q ss_pred             hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC
Q 038407          254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI  297 (528)
Q Consensus       254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~  297 (528)
                                        .+|..+..+++|+.|++++|++++..
T Consensus       255 ------------------~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          255 ------------------RVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             ------------------BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             ------------------ecChhhhcCccCCEEECCCCCCCccC
Confidence                              22334555666666666666665433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=4.1e-32  Score=262.92  Aligned_cols=289  Identities=22%  Similarity=0.259  Sum_probs=166.1

Q ss_pred             CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEE
Q 038407           64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYL  143 (528)
Q Consensus        64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  143 (528)
                      .+++.++++++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.. +.++++|++|
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEE
Confidence            36777888877777 666544   357777777777777666666777777777777777776322333 3456666666


Q ss_pred             EccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCc--cCCccccCCCCCCeeecCCce
Q 038407          144 LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSG--KIPRWLGNLSMLQHIILPENH  220 (528)
Q Consensus       144 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~  220 (528)
                      ++++|.++. ++..+.  ++|++|++++|.+..+++ .+..+++|++|++++|.+..  ..+..+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            666666653 232222  455555555555555443 34455555555555554432  333344444444444444444


Q ss_pred             eeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC
Q 038407          221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC  300 (528)
Q Consensus       221 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~  300 (528)
                      ++. +|..+.  ++|++|++++|                        .+++..+..+..+++|+.|++++|.+++..+..
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGN------------------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTS------------------------CCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccc-CCcccc--ccCCEEECCCC------------------------cCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence            442 222211  33444444443                        333344556667777777777777776544433


Q ss_pred             CcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcc
Q 038407          301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNL  380 (528)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  380 (528)
                      +..                                                    +++|++|++++|.++ .+|..+..+
T Consensus       236 ~~~----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          236 LAN----------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             GGG----------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ccC----------------------------------------------------CCCCCEEECCCCcCc-cCChhhccC
Confidence            322                                                    336777777777776 566667777


Q ss_pred             ccCCEEeCCCccccccCCccccC------CCCCCeeeCcCCcCcc--cCccccccCCCCCEEEccCCC
Q 038407          381 TRIQTLNLSYNNLTGSIPSTFSN------LKHIKSLDLSYNKLDG--KIPLQLVELNTLAVFNVAHNN  440 (528)
Q Consensus       381 ~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ls~N~  440 (528)
                      ++|++|++++|++++..+..|..      .+.|+.|++++|.+..  +.|..|..+.+++.+++++|+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            77777777777777665555543      2566677777776653  445566666777777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.2e-31  Score=259.61  Aligned_cols=247  Identities=21%  Similarity=0.226  Sum_probs=141.5

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      ++++++++++.++ .+|..+   .++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            5666666666665 455432   256666666666666655556666666666666666666333444433 56666666


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccCCc
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDGNH  173 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  173 (528)
                      +++|+++. +|..+.  ++|++|++++|.++ .++...+.++++|++|++++|.+..  ..+..+.++++|++|++++|.
T Consensus       107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            66666653 333322  55666666666665 5555545556666666666666542  334445556666666666666


Q ss_pred             CCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407          174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS  253 (528)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (528)
                      +..++..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.       
T Consensus       183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------  253 (330)
T 1xku_A          183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------  253 (330)
T ss_dssp             CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------
T ss_pred             cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------
Confidence            655554332  55566666666555555555555555666666555555544445555555555555555544       


Q ss_pred             hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                                        .+|..+..+++|+.|++++|++++..+
T Consensus       254 ------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          254 ------------------KVPGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             ------------------SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ------------------cCChhhccCCCcCEEECCCCcCCccCh
Confidence                              233445666677777777776664333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.9e-31  Score=255.62  Aligned_cols=249  Identities=24%  Similarity=0.320  Sum_probs=218.7

Q ss_pred             CCCCEEEccCCcCcc--cCChhhhhcCCCCCEEEccC-CCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           15 HDLEFVRLSHLNLNG--EFPNWLLENNTKLESNFLLN-NSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~--~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      .++++|+|++|.+.+  .+|.. +.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.. +++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTC
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCC
Confidence            689999999999988  78876 58999999999995 8999889999999999999999999998888887776 8899


Q ss_pred             ceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCC-CCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407           92 KYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCV-DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD  170 (528)
Q Consensus        92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  170 (528)
                      ++|++++|.+++..|..|..+++|++|++++|++++.+|..+. .++ +|++|++++|++++..+..+..++ |++|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            9999999999988999999999999999999999888888775 566 899999999999988888888887 9999999


Q ss_pred             CCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccc
Q 038407          171 GNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIY  249 (528)
Q Consensus       171 ~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (528)
                      +|.+.+..+ .+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+..+++|++|++++|++++..
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            999986655 788999999999999999866554 788899999999999999899999999999999999999999776


Q ss_pred             cchhhhccccceeeeccCcc
Q 038407          250 HHASILSLSKDQLVLAHNNF  269 (528)
Q Consensus       250 ~~~~~~~~~~~~L~L~~n~l  269 (528)
                      +.. ......+.+++++|+.
T Consensus       285 p~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSSE
T ss_pred             CCC-ccccccChHHhcCCCC
Confidence            664 3334448899999973

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.5e-34  Score=289.59  Aligned_cols=355  Identities=17%  Similarity=0.140  Sum_probs=200.8

Q ss_pred             CCCCEEEccCCCCccccCcC-ccCCCCCCEEEccCCcCccc----cChhhhhcCCCCceeeccCCcCcccCCccc-cCCC
Q 038407           40 TKLESNFLLNNSLPGLFLLP-IHCHKSLMLLDVSNNNLQGH----IPVKIGDFLPSLKYFNISMNAFDSSIPTSF-GNMN  113 (528)
Q Consensus        40 ~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~ls~n~l~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~  113 (528)
                      ++|++|+|++|.++...... +..+++|++|++++|.+++.    ++..+.. +++|++|++++|.+.+..+..+ ..++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHh-CCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            34555666655554432222 44455556666665555421    1222222 4555555555555543222221 1222


Q ss_pred             ----CCCEEEccCCcccc----cCChhhhhCCCCCCEEEccCCcCcccCCccC-----CCCCCCCEEEccCCcCCccC--
Q 038407          114 ----FLISLDLSNNQLTG----EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRN-----FNLTNLRRLQLDGNHFREIL--  178 (528)
Q Consensus       114 ----~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~--  178 (528)
                          +|++|++++|.++.    .++.. +..+++|++|++++|.+++..+..+     ...++|++|++++|.+....  
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence                45555555555542    11222 2345555555555555443211111     12334555555555544321  


Q ss_pred             ---cccCCCCCCCEEEccCCccCccCCcccc-----CCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccCccc
Q 038407          179 ---ESLSKCSSLEGLYLSDNNLSGKIPRWLG-----NLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDNNIS  246 (528)
Q Consensus       179 ---~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~  246 (528)
                         ..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|++.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence               1333445555555555554432222221     133455555555555432    2334444455555555555443


Q ss_pred             ccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC----CCCCCcCCccccccccCCCCCCCCcc
Q 038407          247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH----IPPCLDNTTLHESYIDTSSPESSETS  322 (528)
Q Consensus       247 ~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~  322 (528)
                      +.....                   ..+..+..+++|+.|++++|.+++.    ++..+                     
T Consensus       241 ~~~~~~-------------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---------------------  280 (461)
T 1z7x_W          241 DVGMAE-------------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL---------------------  280 (461)
T ss_dssp             HHHHHH-------------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH---------------------
T ss_pred             hHHHHH-------------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH---------------------
Confidence            221100                   1122344689999999999988632    11111                     


Q ss_pred             ccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcc-----ccCCEEeCCCcccccc-
Q 038407          323 FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNL-----TRIQTLNLSYNNLTGS-  396 (528)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~-  396 (528)
                                                     ..+++|++|++++|.+.+..+..+...     ++|+.|++++|.+++. 
T Consensus       281 -------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          281 -------------------------------RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             -------------------------------HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             -------------------------------hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence                                           114589999999999876544444433     6999999999999865 


Q ss_pred             ---CCccccCCCCCCeeeCcCCcCcccCcccccc-----CCCCCEEEccCCCCcc----CCCCCCcccCCCCcCcccCCC
Q 038407          397 ---IPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE-----LNTLAVFNVAHNNLSG----KIPEWTAQFATFNESSYEGNP  464 (528)
Q Consensus       397 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~~~~l~~l~l~~Np  464 (528)
                         ++..+..+++|++|+|++|++++..+..+..     .++|++|++++|+++.    .+|..+..+++|+.+++++|+
T Consensus       330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence               4566778899999999999998766655543     6799999999999986    677777788999999999998


Q ss_pred             CCC
Q 038407          465 FLC  467 (528)
Q Consensus       465 ~~c  467 (528)
                      ...
T Consensus       410 i~~  412 (461)
T 1z7x_W          410 LGD  412 (461)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=261.46  Aligned_cols=252  Identities=23%  Similarity=0.270  Sum_probs=183.5

Q ss_pred             CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407          140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE  218 (528)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  218 (528)
                      .+.++.++..++. +|..+.  ++++.|++++|.+..+++ .|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4455555555553 333322  455566666666555543 555556666666666655555555555556666666666


Q ss_pred             ceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                      |+++...+..|..+++|++|++++|++.                        ...+..|..+++|+.|++++|...+.++
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIE------------------------SIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCccc------------------------ccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            6655444445555555666655555554                        4445578889999999999865443333


Q ss_pred             C-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhh
Q 038407          299 P-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI  377 (528)
Q Consensus       299 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  377 (528)
                      . .+..                                                    +++|++|++++|.++ .+| .+
T Consensus       178 ~~~~~~----------------------------------------------------l~~L~~L~L~~n~l~-~~~-~~  203 (440)
T 3zyj_A          178 EGAFEG----------------------------------------------------LSNLRYLNLAMCNLR-EIP-NL  203 (440)
T ss_dssp             TTTTTT----------------------------------------------------CSSCCEEECTTSCCS-SCC-CC
T ss_pred             cchhhc----------------------------------------------------ccccCeecCCCCcCc-ccc-cc
Confidence            2 2322                                                    458999999999998 455 47


Q ss_pred             hccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCc
Q 038407          378 GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNE  457 (528)
Q Consensus       378 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~  457 (528)
                      ..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence            88999999999999999988999999999999999999999999999999999999999999999888888888999999


Q ss_pred             CcccCCCCCCCCCCC
Q 038407          458 SSYEGNPFLCGLPLP  472 (528)
Q Consensus       458 l~l~~Np~~c~~~l~  472 (528)
                      +++++|||.|+|.+.
T Consensus       284 L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          284 IHLHHNPWNCNCDIL  298 (440)
T ss_dssp             EECCSSCEECSSTTH
T ss_pred             EEcCCCCccCCCCch
Confidence            999999999999653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.6e-30  Score=261.23  Aligned_cols=252  Identities=21%  Similarity=0.225  Sum_probs=186.5

Q ss_pred             CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407          140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE  218 (528)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  218 (528)
                      ...++.++..++. +|..+.  +++++|++++|.+..+++ .|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3456666555553 333222  456666666666666543 556666666666666666655555666666666666666


Q ss_pred             ceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                      |++++..+..|..+++|++|++++|++.+                        ..+..|..+++|+.|++++|...+.++
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence            66665555556666666666666665543                        444568889999999999865443333


Q ss_pred             C-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhh
Q 038407          299 P-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI  377 (528)
Q Consensus       299 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  377 (528)
                      . .+..                                                    +++|++|++++|.+++ +| .+
T Consensus       189 ~~~~~~----------------------------------------------------l~~L~~L~L~~n~l~~-~~-~~  214 (452)
T 3zyi_A          189 EGAFEG----------------------------------------------------LFNLKYLNLGMCNIKD-MP-NL  214 (452)
T ss_dssp             TTTTTT----------------------------------------------------CTTCCEEECTTSCCSS-CC-CC
T ss_pred             hhhccC----------------------------------------------------CCCCCEEECCCCcccc-cc-cc
Confidence            2 2222                                                    4579999999999985 44 57


Q ss_pred             hccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCc
Q 038407          378 GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNE  457 (528)
Q Consensus       378 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~  457 (528)
                      ..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence            88999999999999999988999999999999999999999998999999999999999999999888888888999999


Q ss_pred             CcccCCCCCCCCCCC
Q 038407          458 SSYEGNPFLCGLPLP  472 (528)
Q Consensus       458 l~l~~Np~~c~~~l~  472 (528)
                      +++++|||.|+|.+.
T Consensus       295 L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          295 LHLHHNPWNCDCDIL  309 (452)
T ss_dssp             EECCSSCEECSTTTH
T ss_pred             EEccCCCcCCCCCch
Confidence            999999999999754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.9e-30  Score=246.31  Aligned_cols=234  Identities=21%  Similarity=0.263  Sum_probs=143.5

Q ss_pred             CCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCcc--CCccccCCCCCCeeecCCceeeccCcccccCCCCCCEE
Q 038407          162 TNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGK--IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL  238 (528)
Q Consensus       162 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  238 (528)
                      ++|++|++++|.+..++. .+..+++|++|++++|.+...  .+..+..+++|++|++++|.++ .++..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            345555555555554444 245555555555555555421  1344445566666666666665 334455666666666


Q ss_pred             EcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCC
Q 038407          239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPES  318 (528)
Q Consensus       239 ~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~  318 (528)
                      ++++|++.+..+                       ...+..+++|+.|++++|.+.+..+..+..               
T Consensus       107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------  148 (306)
T 2z66_A          107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------  148 (306)
T ss_dssp             ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTT---------------
T ss_pred             ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhccc---------------
Confidence            666666554321                       123455666666666666665444443332               


Q ss_pred             CCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCcc-CCChhhhccccCCEEeCCCccccccC
Q 038407          319 SETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG-QIPPQIGNLTRIQTLNLSYNNLTGSI  397 (528)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~  397 (528)
                                                           +++|++|++++|.+.+ ..|..+..+++|++|++++|++++..
T Consensus       149 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  191 (306)
T 2z66_A          149 -------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  191 (306)
T ss_dssp             -------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             -------------------------------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence                                                 2356666666666654 45666677777777777777777666


Q ss_pred             CccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccC-CCCcCcccCCCCCCCCCC
Q 038407          398 PSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA-TFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       398 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~l~l~~Np~~c~~~l  471 (528)
                      |..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..++ +|+.+++++||+.|+|++
T Consensus       192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            77777777777777777777766666677777777777777777777776666663 677777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.5e-30  Score=251.74  Aligned_cols=279  Identities=24%  Similarity=0.241  Sum_probs=213.1

Q ss_pred             CCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEE
Q 038407          112 MNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGL  190 (528)
Q Consensus       112 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L  190 (528)
                      ++.....+.+++.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+..+++ .+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            445556788888888 8887654   578999999999887666678888999999999998888765 68888899999


Q ss_pred             EccCCccCccCCccccCCCCCCeeecCCceeeccCc-ccccCCCCCCEEEcccCc-ccccccchhhhccccceeeeccCc
Q 038407          191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP-MEFCQLDSLQILNISDNN-ISGIYHHASILSLSKDQLVLAHNN  268 (528)
Q Consensus       191 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~L~~n~  268 (528)
                      ++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|. +.++                    
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------  165 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--------------------  165 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--------------------
Confidence            999998886555558888889999999988885444 467888888888888873 4433                    


Q ss_pred             ccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccc
Q 038407          269 FEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA  348 (528)
Q Consensus       269 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (528)
                          .+..+..+++|+.|++++|.+++..|..+..                                             
T Consensus       166 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------------  196 (353)
T 2z80_A          166 ----QRKDFAGLTFLEELEIDASDLQSYEPKSLKS---------------------------------------------  196 (353)
T ss_dssp             ----CTTTTTTCCEEEEEEEEETTCCEECTTTTTT---------------------------------------------
T ss_pred             ----CHHHccCCCCCCEEECCCCCcCccCHHHHhc---------------------------------------------
Confidence                3445677888888888888887666665544                                             


Q ss_pred             ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccc---cCCCCCCeeeCcCCcCcc----cC
Q 038407          349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF---SNLKHIKSLDLSYNKLDG----KI  421 (528)
Q Consensus       349 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~  421 (528)
                             +++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+   ...+.++.++|+++.+++    .+
T Consensus       197 -------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          197 -------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             -------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             -------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                   3368888888888764333345567888888888888886655443   346678888888888875    36


Q ss_pred             ccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          422 PLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       422 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      |..+..+++|++|++++|+++...+..+..+++|+.+++++||+.|+|+
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            7778889999999999999984433335788999999999999999886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4e-30  Score=251.28  Aligned_cols=205  Identities=18%  Similarity=0.171  Sum_probs=129.4

Q ss_pred             CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407           63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  142 (528)
                      |+.....+.+++.++ .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCE
Confidence            344445666666666 5555443   36666666666666555556666666666666666666 343333345666666


Q ss_pred             EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCC-ccCccCCccccCCCCCCeeecCCc
Q 038407          143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDN-NLSGKIPRWLGNLSMLQHIILPEN  219 (528)
Q Consensus       143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  219 (528)
                      |++++|.+++..+..+.++++|++|++++|.+..++.  .+..+++|++|++++| .+....+..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            6666666664333335566666666666666666655  5666777777777776 355555566777777777777777


Q ss_pred             eeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC
Q 038407          220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH  296 (528)
Q Consensus       220 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  296 (528)
                      .+++..|..+..+++|++|++++|++..+..                        ..+..+++|+.|++++|.+++.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~~~L~~L~L~~n~l~~~  237 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLE------------------------IFVDVTSSVECLELRDTDLDTF  237 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHH------------------------HHHHHTTTEEEEEEESCBCTTC
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchh------------------------hhhhhcccccEEECCCCccccc
Confidence            7777667777777777777777777653321                        1233466777777777777643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.1e-29  Score=243.12  Aligned_cols=86  Identities=28%  Similarity=0.357  Sum_probs=50.1

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCC-CCCEEEc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELN-TLAVFNV  436 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l  436 (528)
                      +|++|++++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            445555555555544455555556666666666666655555556666666666666666665565565553 5666666


Q ss_pred             cCCCCcc
Q 038407          437 AHNNLSG  443 (528)
Q Consensus       437 s~N~l~~  443 (528)
                      ++|++++
T Consensus       256 ~~N~~~~  262 (306)
T 2z66_A          256 TQNDFAC  262 (306)
T ss_dssp             TTCCEEC
T ss_pred             cCCCeec
Confidence            6666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=8.6e-29  Score=234.35  Aligned_cols=229  Identities=20%  Similarity=0.225  Sum_probs=146.0

Q ss_pred             CEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCc
Q 038407          165 RRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN  244 (528)
Q Consensus       165 ~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  244 (528)
                      ++++.+++.++.+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            45566666666555432  3466666666666665555566666667777777666666656666666777777766665


Q ss_pred             -ccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccc
Q 038407          245 -ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSF  323 (528)
Q Consensus       245 -l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  323 (528)
                       +..+                        .+..+..+++|++|++++|.+++..|..+..                    
T Consensus        92 ~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------  127 (285)
T 1ozn_A           92 QLRSV------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRG--------------------  127 (285)
T ss_dssp             TCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------
T ss_pred             Ccccc------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhC--------------------
Confidence             4432                        2334555666666666666665444443332                    


Q ss_pred             cccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccC
Q 038407          324 VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN  403 (528)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  403 (528)
                                                      +++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..
T Consensus       128 --------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  175 (285)
T 1ozn_A          128 --------------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (285)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             --------------------------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence                                            235666666666666555555666777777777777777655556677


Q ss_pred             CCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       404 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      +++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.+++++||+.|+|+.
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            77777777777777766666777777777777777777765555555667777777777777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=6.9e-28  Score=242.60  Aligned_cols=248  Identities=24%  Similarity=0.261  Sum_probs=188.6

Q ss_pred             CCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEcc
Q 038407          115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLS  193 (528)
Q Consensus       115 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~  193 (528)
                      .+.++..+..++ .+|..+.   ++++.|++++|.++...+..|.++++|++|++++|.+..+++ .|..+++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456666677776 7776543   567778888887777666777788888888888888877764 67778888888888


Q ss_pred             CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407          194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV  273 (528)
Q Consensus       194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~  273 (528)
                      +|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.                       ..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------------------i~  177 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-----------------------IS  177 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------EC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----------------------eC
Confidence            8888766666778888888888888888877677788888888888887432211                       22


Q ss_pred             cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccc
Q 038407          274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG  353 (528)
Q Consensus       274 ~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (528)
                      +..|..+++|+.|++++|.++ .+|. +..                                                  
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~--------------------------------------------------  205 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LTP--------------------------------------------------  205 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS-SCCC-CTT--------------------------------------------------
T ss_pred             cchhhcccccCeecCCCCcCc-cccc-cCC--------------------------------------------------
Confidence            335677888888888888776 2331 111                                                  


Q ss_pred             cccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCE
Q 038407          354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV  433 (528)
Q Consensus       354 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  433 (528)
                        +++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.
T Consensus       206 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          206 --LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             --CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             --CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence              447888888888888777888888888888888888888888888888888888888888888777777888888888


Q ss_pred             EEccCCCCcc
Q 038407          434 FNVAHNNLSG  443 (528)
Q Consensus       434 L~ls~N~l~~  443 (528)
                      |++++|++..
T Consensus       284 L~L~~Np~~C  293 (440)
T 3zyj_A          284 IHLHHNPWNC  293 (440)
T ss_dssp             EECCSSCEEC
T ss_pred             EEcCCCCccC
Confidence            8888888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7.2e-28  Score=243.31  Aligned_cols=248  Identities=22%  Similarity=0.229  Sum_probs=189.1

Q ss_pred             CCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEcc
Q 038407          115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLS  193 (528)
Q Consensus       115 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~  193 (528)
                      ...++.++..++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.+..+++ .|..+++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456666666666 6666442   567778888887777667777788888888888888877764 67778888888888


Q ss_pred             CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407          194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV  273 (528)
Q Consensus       194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~  273 (528)
                      +|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++|...+.                       ..
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------------------i~  188 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-----------------------IS  188 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------EC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-----------------------cC
Confidence            8888766666777888888888888888876666788888888888887432211                       22


Q ss_pred             cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccc
Q 038407          274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG  353 (528)
Q Consensus       274 ~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (528)
                      +..|..+++|+.|++++|.+++. |. +..                                                  
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~--------------------------------------------------  216 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-PN-LTP--------------------------------------------------  216 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-CC-CTT--------------------------------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-cc-ccc--------------------------------------------------
Confidence            23567788888888888887632 21 111                                                  


Q ss_pred             cccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCE
Q 038407          354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV  433 (528)
Q Consensus       354 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  433 (528)
                        +++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.
T Consensus       217 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          217 --LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             --CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             --cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence              457888888888888888888888889999999999888888888888889999999999888777777888888999


Q ss_pred             EEccCCCCcc
Q 038407          434 FNVAHNNLSG  443 (528)
Q Consensus       434 L~ls~N~l~~  443 (528)
                      |++++|++..
T Consensus       295 L~L~~Np~~C  304 (452)
T 3zyi_A          295 LHLHHNPWNC  304 (452)
T ss_dssp             EECCSSCEEC
T ss_pred             EEccCCCcCC
Confidence            9999888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.3e-31  Score=277.81  Aligned_cols=413  Identities=12%  Similarity=0.037  Sum_probs=228.9

Q ss_pred             cCchhhhCCCCCCEEEccCCcCc---ccCC-----------hhhhhcCCCCCEEEccCCCCccccCcCccC-CC-CCCEE
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLN---GEFP-----------NWLLENNTKLESNFLLNNSLPGLFLLPIHC-HK-SLMLL   69 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~---~~~~-----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~-~L~~L   69 (528)
                      ..+..+..+++|++|+++++...   +.+|           ..++.++++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            34455677788888888765321   1222           122346788888888888776654444444 33 38888


Q ss_pred             EccCCc-CccccChhhhhcCCCCceeeccCCcCcccC----CccccCCCCCCEEEccCCcccc----cCChhhhhCCCCC
Q 038407           70 DVSNNN-LQGHIPVKIGDFLPSLKYFNISMNAFDSSI----PTSFGNMNFLISLDLSNNQLTG----EIPEHLAMGCVDL  140 (528)
Q Consensus        70 ~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L  140 (528)
                      ++++|. ++......+...+++|++|++++|.+++..    +..+..+++|++|++++|.+++    .++ .++.++++|
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L  222 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSL  222 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCC
Confidence            887765 221111122233677888888877765442    2234566778888887777751    122 223457778


Q ss_pred             CEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC----ccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeec
Q 038407          141 EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR----EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIIL  216 (528)
Q Consensus       141 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  216 (528)
                      ++|++++|.+.+ .+..+..+++|++|++++....    .....+..+++|+.|+++++... .++..+..+++|++|++
T Consensus       223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~L  300 (592)
T 3ogk_B          223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDL  300 (592)
T ss_dssp             CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEE
T ss_pred             cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEec
Confidence            888888777664 4455666777777777643221    11224556667777777665332 45556666677777777


Q ss_pred             CCceeeccCc-ccccCCCCCCEEEcccCcccccccchhhhc-cccceeeecc-----------Cccccc-CcccccCCCC
Q 038407          217 PENHFEGPIP-MEFCQLDSLQILNISDNNISGIYHHASILS-LSKDQLVLAH-----------NNFEGE-VPIQLCQLNK  282 (528)
Q Consensus       217 ~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~L~~-----------n~l~~~-~~~~l~~l~~  282 (528)
                      ++|.+++... ..+..+++|++|+++ +.+........... ..+++|++++           +.+++. ++.....+++
T Consensus       301 s~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (592)
T 3ogk_B          301 LYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE  379 (592)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred             CCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence            7776553322 234566777777776 33322211111122 2336666662           344432 1222344667


Q ss_pred             CCEEEccCCcCCcCCCCCCcC-Cc-cccccccCCCCCCCCccccccccccccccccccceeeeec--cccccccccccCc
Q 038407          283 LQLIDLSNNILSGHIPPCLDN-TT-LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK--NIAYTYRGRVISY  358 (528)
Q Consensus       283 L~~L~ls~n~l~~~~p~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  358 (528)
                      |+.|+++.|.+++..+..+.. .+ +....+......                      ..++..  ..........+++
T Consensus       380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~----------------------n~l~~~p~~~~~~~~~~~~~~  437 (592)
T 3ogk_B          380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE----------------------ERITDLPLDNGVRSLLIGCKK  437 (592)
T ss_dssp             CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC----------------------SCCSSCCCHHHHHHHHHHCTT
T ss_pred             CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC----------------------ccccCchHHHHHHHHHHhCCC
Confidence            777777666665432221111 00 000000000000                      000000  0000000112567


Q ss_pred             ccEEECCCCc--CccCCChhhh-ccccCCEEeCCCccccc-cCCccccCCCCCCeeeCcCCcCccc-CccccccCCCCCE
Q 038407          359 LSELDLSYNK--LIGQIPPQIG-NLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDGK-IPLQLVELNTLAV  433 (528)
Q Consensus       359 L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  433 (528)
                      |++|++++|.  +++..+..+. .+++|+.|+|++|++++ .++..+.++++|++|+|++|++++. ++..+..+++|++
T Consensus       438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  517 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY  517 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred             CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence            8999987544  5544344443 37889999999998875 3344557888999999999998654 3444567889999


Q ss_pred             EEccCCCCccC
Q 038407          434 FNVAHNNLSGK  444 (528)
Q Consensus       434 L~ls~N~l~~~  444 (528)
                      |++++|+++..
T Consensus       518 L~ls~n~it~~  528 (592)
T 3ogk_B          518 LWVQGYRASMT  528 (592)
T ss_dssp             EEEESCBCCTT
T ss_pred             eECcCCcCCHH
Confidence            99999997754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=5.6e-28  Score=228.72  Aligned_cols=256  Identities=22%  Similarity=0.247  Sum_probs=212.9

Q ss_pred             CCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeec
Q 038407           17 LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNI   96 (528)
Q Consensus        17 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L   96 (528)
                      -++++.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l   87 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDL   87 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeC
Confidence            368899998887 778643   579999999999999888888999999999999999998444555544 899999999


Q ss_pred             cCCc-CcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407           97 SMNA-FDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR  175 (528)
Q Consensus        97 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  175 (528)
                      ++|. +....+..|..+++|++|++++|.++ .++...+.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence            9997 88777889999999999999999998 565555568999999999999999766667889999999999999999


Q ss_pred             ccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhh
Q 038407          176 EILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI  254 (528)
Q Consensus       176 ~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  254 (528)
                      .+++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++....+....
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~  246 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL  246 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH
Confidence            9887 588999999999999999988899999999999999999999987777899999999999999998765443221


Q ss_pred             hccccceeeeccCcccccCcccccC
Q 038407          255 LSLSKDQLVLAHNNFEGEVPIQLCQ  279 (528)
Q Consensus       255 ~~~~~~~L~L~~n~l~~~~~~~l~~  279 (528)
                      . ...+.+....+.+....|..+.+
T Consensus       247 ~-~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          247 W-AWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             H-HHHHHCCSEECCCBEEESGGGTT
T ss_pred             H-HHHHhcccccCccccCCchHhCC
Confidence            1 11133445555665555655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3e-28  Score=234.72  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      +|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|++.+.+|..+..+++|+.+++.
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            44445555444444444445555555555555555444555455555555555555555555555555555555555554


Q ss_pred             CCC
Q 038407          438 HNN  440 (528)
Q Consensus       438 ~N~  440 (528)
                      .|.
T Consensus       310 ~~~  312 (328)
T 4fcg_A          310 PHL  312 (328)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=6e-28  Score=232.63  Aligned_cols=225  Identities=20%  Similarity=0.243  Sum_probs=160.0

Q ss_pred             CCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEc
Q 038407          113 NFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYL  192 (528)
Q Consensus       113 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L  192 (528)
                      .+++.|++++|.++ .+|..++ .+++|++|++++|.++ .++..+..+++|++|++++|.+..++..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            44555555555554 4554443 3555555555555555 3444555555555555555555555555556666666666


Q ss_pred             cCCccCccCCcccc---------CCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceee
Q 038407          193 SDNNLSGKIPRWLG---------NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLV  263 (528)
Q Consensus       193 ~~n~l~~~~~~~l~---------~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  263 (528)
                      ++|.+.+.+|..+.         .+++|++|++++|+++ .+|..+..+++|++|++++|++.++               
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l---------------  221 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL---------------  221 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC---------------
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC---------------
Confidence            66555555554443         4777888888888777 6677777778888888777776643               


Q ss_pred             eccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeee
Q 038407          264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT  343 (528)
Q Consensus       264 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (528)
                                |..+..+++|+.|++++|.+.+.+|..+..                                        
T Consensus       222 ----------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~----------------------------------------  251 (328)
T 4fcg_A          222 ----------GPAIHHLPKLEELDLRGCTALRNYPPIFGG----------------------------------------  251 (328)
T ss_dssp             ----------CGGGGGCTTCCEEECTTCTTCCBCCCCTTC----------------------------------------
T ss_pred             ----------chhhccCCCCCEEECcCCcchhhhHHHhcC----------------------------------------
Confidence                      335778889999999999888888776654                                        


Q ss_pred             eccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407          344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD  418 (528)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  418 (528)
                                  +++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++++++|+.+++..+.+.
T Consensus       252 ------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          252 ------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence                        347999999999888899999999999999999999999999999999999999999987765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=3.3e-27  Score=244.44  Aligned_cols=134  Identities=23%  Similarity=0.254  Sum_probs=66.2

Q ss_pred             CCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEc
Q 038407           41 KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL  120 (528)
Q Consensus        41 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (528)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|+++. +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            4666666666665 3333332  56666666666665 4544    24556666666666553 232   4455555565


Q ss_pred             cCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccC
Q 038407          121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS  198 (528)
Q Consensus       121 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~  198 (528)
                      ++|.++ .+|.    .+++|+.|++++|.++. ++.   .+++|++|++++|.+..++.   .+++|+.|++++|.++
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC
Confidence            555555 4443    23455555555555543 221   12444444444444444332   1233444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5e-31  Score=276.45  Aligned_cols=416  Identities=12%  Similarity=0.052  Sum_probs=284.7

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCc---cccCcCcc------------CCCCCCEEEccCCcCccccCh
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLP---GLFLLPIH------------CHKSLMLLDVSNNNLQGHIPV   82 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~------------~~~~L~~L~ls~n~l~~~~~~   82 (528)
                      +.+.+.++ +. ..|..++..+++|++|++++|...   +.+|..+.            .+++|++|++++|.+++..+.
T Consensus        53 ~~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~  130 (592)
T 3ogk_B           53 EHVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD  130 (592)
T ss_dssp             CEEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             cEEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence            34555444 33 456677889999999999887532   22332332            689999999999998866555


Q ss_pred             hhhhcCCC-CceeeccCCc-Ccc-cCCccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEccCCcCcc----
Q 038407           83 KIGDFLPS-LKYFNISMNA-FDS-SIPTSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLSNNSLEG----  152 (528)
Q Consensus        83 ~~~~~l~~-L~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~----  152 (528)
                      .+...+++ |++|++++|. ++. ..+....++++|++|++++|.+++.-..   .+...+++|++|++++|.+++    
T Consensus       131 ~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~  210 (592)
T 3ogk_B          131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK  210 (592)
T ss_dssp             HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH
T ss_pred             HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH
Confidence            56554455 9999999986 221 1222334789999999999998744222   244578999999999999872    


Q ss_pred             cCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccC---ccCCccccCCCCCCeeecCCceeeccCcccc
Q 038407          153 HLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS---GKIPRWLGNLSMLQHIILPENHFEGPIPMEF  229 (528)
Q Consensus       153 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l  229 (528)
                      ..+..+.++++|++|++++|.+.+++..+..+++|++|+++.....   ......+..+++|+.++++++... .++..+
T Consensus       211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~  289 (592)
T 3ogk_B          211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF  289 (592)
T ss_dssp             HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG
T ss_pred             HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH
Confidence            2333445789999999999999988878888999999999864332   233456778899999999986443 567778


Q ss_pred             cCCCCCCEEEcccCcccccccchhhhc-cccceeeeccCcccccCcccccCCCCCCEEEccC-----------CcCCcCC
Q 038407          230 CQLDSLQILNISDNNISGIYHHASILS-LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN-----------NILSGHI  297 (528)
Q Consensus       230 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~-----------n~l~~~~  297 (528)
                      ..+++|++|++++|.+++......... ..+++|+++++...+.++..+..+++|++|++++           +.+++..
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~  369 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG  369 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence            889999999999999765433222233 3448999985444444555567789999999994           4443210


Q ss_pred             CCC-CcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc---cccccccCcccEEECC----CCcC
Q 038407          298 PPC-LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY---TYRGRVISYLSELDLS----YNKL  369 (528)
Q Consensus       298 p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls----~n~l  369 (528)
                      ... ....+                              ....+.+....+..   ...+..+++|++|+++    .|.+
T Consensus       370 ~~~l~~~~~------------------------------~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          370 LIALAQGCQ------------------------------ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             HHHHHHHCT------------------------------TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             HHHHHhhCc------------------------------cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            000 00000                              00111111111111   1111236789999996    6677


Q ss_pred             ccC-----CChhhhccccCCEEeCCCcc--ccccCCccc-cCCCCCCeeeCcCCcCccc-CccccccCCCCCEEEccCCC
Q 038407          370 IGQ-----IPPQIGNLTRIQTLNLSYNN--LTGSIPSTF-SNLKHIKSLDLSYNKLDGK-IPLQLVELNTLAVFNVAHNN  440 (528)
Q Consensus       370 ~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~  440 (528)
                      ++.     ++..+.++++|+.|++++|.  +++..+..+ ..+++|++|++++|++++. ++..+..+++|++|++++|+
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            753     33447789999999998654  665444444 3489999999999999863 45556789999999999999


Q ss_pred             CccC-CCCCCcccCCCCcCcccCCCCC
Q 038407          441 LSGK-IPEWTAQFATFNESSYEGNPFL  466 (528)
Q Consensus       441 l~~~-~p~~~~~~~~l~~l~l~~Np~~  466 (528)
                      ++.. ++.....+++|+.+++++|+..
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            8644 3333446899999999999843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.9e-26  Score=237.34  Aligned_cols=155  Identities=27%  Similarity=0.316  Sum_probs=80.5

Q ss_pred             CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407           65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL  144 (528)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  144 (528)
                      +++.|++++|.++ .+|..+.   ++|++|++++|.++. +|.   .+++|++|++++|+++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            3555666665555 5554432   455666666665552 232   3455666666666555 4444    345566666


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeecc
Q 038407          145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP  224 (528)
Q Consensus       145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  224 (528)
                      +++|.+++ ++.   .+++|++|++++|.++.++..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++ 
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            66665554 222   345555666666655555432   2555566666655552 222   23455556666655553 


Q ss_pred             CcccccCCCCCCEEEcccCcccc
Q 038407          225 IPMEFCQLDSLQILNISDNNISG  247 (528)
Q Consensus       225 ~~~~l~~l~~L~~L~L~~n~l~~  247 (528)
                      +|   ..+++|+.|++++|++++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC
T ss_pred             Cc---ccCCCCcEEECCCCCCCC
Confidence            23   234555555555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=7.2e-29  Score=238.34  Aligned_cols=264  Identities=20%  Similarity=0.215  Sum_probs=156.2

Q ss_pred             CEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEcc
Q 038407           67 MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLS  146 (528)
Q Consensus        67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  146 (528)
                      +..+++.+.+. ..+..++..+++|++|++++|.+++..|..|.++++|++|++++|.+++. +.  +..+++|++|+++
T Consensus        13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEECC
T ss_pred             eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEECc
Confidence            34455555554 33344444455566666666666555445555555555555555555422 21  2344444444444


Q ss_pred             CCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCc
Q 038407          147 NNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP  226 (528)
Q Consensus       147 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  226 (528)
                      +|.++                        +++.    .++|++|++++|.+.+..+.   .+++|++|++++|++++..+
T Consensus        89 ~n~l~------------------------~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           89 NNYVQ------------------------ELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SSEEE------------------------EEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred             CCccc------------------------cccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence            44444                        3321    14455555555555433222   23456666666666665555


Q ss_pred             ccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCcc
Q 038407          227 MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTL  306 (528)
Q Consensus       227 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~  306 (528)
                      ..+..+++|++|++++|++.+..+.                       ..+..+++|++|++++|.+++. +...     
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~-~~~~-----  188 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFA-----------------------ELAASSDTLEHLNLQYNFIYDV-KGQV-----  188 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGG-----------------------GGGGGTTTCCEEECTTSCCCEE-ECCC-----
T ss_pred             hhhhccCCCCEEECCCCCCCcccHH-----------------------HHhhccCcCCEEECCCCcCccc-cccc-----
Confidence            5556666666666666665543221                       1123466777777777776532 1100     


Q ss_pred             ccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEE
Q 038407          307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL  386 (528)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  386 (528)
                                                                      .+++|++|++++|.+++ +|..+..+++|+.|
T Consensus       189 ------------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  219 (317)
T 3o53_A          189 ------------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (317)
T ss_dssp             ------------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             ------------------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence                                                            13468888888888874 45558888888888


Q ss_pred             eCCCccccccCCccccCCCCCCeeeCcCCcCc-ccCccccccCCCCCEEEccCC-CCccC
Q 038407          387 NLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD-GKIPLQLVELNTLAVFNVAHN-NLSGK  444 (528)
Q Consensus       387 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N-~l~~~  444 (528)
                      +|++|+++ .+|..+..+++|+.|++++|++. +..|..+..+++|+.+++++| .+.+.
T Consensus       220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            88888888 45677888888888888888888 667777888888888888744 34443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=3.4e-30  Score=270.31  Aligned_cols=410  Identities=17%  Similarity=0.141  Sum_probs=222.3

Q ss_pred             hhhhCCCCCCEEEccCCcCcccC---C-----------hhhhhcCCCCCEEEccCCCCccccCcCcc-CCCCCCEEEccC
Q 038407            9 NFFYHQHDLEFVRLSHLNLNGEF---P-----------NWLLENNTKLESNFLLNNSLPGLFLLPIH-CHKSLMLLDVSN   73 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~~~~~~~---~-----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~ls~   73 (528)
                      ..+..+++|++|+++++.....+   |           ..++..+++|++|+|++|.+++..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            34678899999999987532221   1           23356789999999999998876665564 689999999999


Q ss_pred             C-cCccccChhhhhcCCCCceeeccCCcCcccCCcccc----CCCCCCEEEccCCcccccCCh----hhhhCCCCCCEEE
Q 038407           74 N-NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG----NMNFLISLDLSNNQLTGEIPE----HLAMGCVDLEYLL  144 (528)
Q Consensus        74 n-~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~  144 (528)
                      | .++......+...+++|++|++++|.+++..+..+.    .+++|++|++++|. . .+..    .+...+++|++|+
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEE
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEe
Confidence            8 555322234444489999999999998765544443    66799999999987 2 3332    2334579999999


Q ss_pred             ccCC-cCcccCCccCCCCCCCCEEEccCCc-------CCccCcccCCCCCCCEE-EccCCccCccCCccccCCCCCCeee
Q 038407          145 LSNN-SLEGHLFPRNFNLTNLRRLQLDGNH-------FREILESLSKCSSLEGL-YLSDNNLSGKIPRWLGNLSMLQHII  215 (528)
Q Consensus       145 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~  215 (528)
                      +++| .+.+ ++..+..+++|++|+++.+.       +.+++..+.++++|+.| .+.+... ..++..+..+++|++|+
T Consensus       218 L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~  295 (594)
T 2p1m_B          218 LNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLN  295 (594)
T ss_dssp             CCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEE
T ss_pred             cCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEE
Confidence            9988 3333 55556678889999865543       33333355666777776 3333222 13344444566777777


Q ss_pred             cCCceeeccCc-ccccCCCCCCEEEcccCcccccccchhhh-ccccceeeecc---------CcccccCccccc-CCCCC
Q 038407          216 LPENHFEGPIP-MEFCQLDSLQILNISDNNISGIYHHASIL-SLSKDQLVLAH---------NNFEGEVPIQLC-QLNKL  283 (528)
Q Consensus       216 L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~L~L~~---------n~l~~~~~~~l~-~l~~L  283 (528)
                      +++|.+++... ..+..+++|++|++++| +.......... ...+++|++.+         +.+++.....+. .+++|
T Consensus       296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L  374 (594)
T 2p1m_B          296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL  374 (594)
T ss_dssp             CTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred             ccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence            77776553322 22456677777777766 32211111111 12235665522         333322222222 35666


Q ss_pred             CEEEccCCcCCcCCCCCCcC-Cc-cccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccE
Q 038407          284 QLIDLSNNILSGHIPPCLDN-TT-LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE  361 (528)
Q Consensus       284 ~~L~ls~n~l~~~~p~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  361 (528)
                      +.|++..|.+++..+..+.. .+ +....+...... ..........                 ..........+++|++
T Consensus       375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~-----------------~~~~~~l~~~~~~L~~  436 (594)
T 2p1m_B          375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK-APDYLTLEPL-----------------DIGFGAIVEHCKDLRR  436 (594)
T ss_dssp             CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-CCCTTTCCCT-----------------HHHHHHHHHHCTTCCE
T ss_pred             HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-CcccccCCch-----------------hhHHHHHHhhCCCccE
Confidence            66666666554321111000 00 000000000000 0000000000                 0000000112445666


Q ss_pred             EECCCCcCccCCChhhhc-cccCCEEeCCCccccccCCccc-cCCCCCCeeeCcCCcCcccCcc-ccccCCCCCEEEccC
Q 038407          362 LDLSYNKLIGQIPPQIGN-LTRIQTLNLSYNNLTGSIPSTF-SNLKHIKSLDLSYNKLDGKIPL-QLVELNTLAVFNVAH  438 (528)
Q Consensus       362 L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~  438 (528)
                      |++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|++|+|++|++++.... ....+++|++|++++
T Consensus       437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~  515 (594)
T 2p1m_B          437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS  515 (594)
T ss_dssp             EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred             EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence            66655 444333333333 5666666666666654433333 4566666666666666543332 233456666666666


Q ss_pred             CCCc
Q 038407          439 NNLS  442 (528)
Q Consensus       439 N~l~  442 (528)
                      |+++
T Consensus       516 ~~~~  519 (594)
T 2p1m_B          516 CSVS  519 (594)
T ss_dssp             SCCB
T ss_pred             CCCC
Confidence            6663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.3e-26  Score=218.27  Aligned_cols=226  Identities=22%  Similarity=0.216  Sum_probs=164.0

Q ss_pred             EEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccc
Q 038407          167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS  246 (528)
Q Consensus       167 L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  246 (528)
                      .+..+..+..+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            4444555555555432  45777777777776555556677777777777777777666666777777777777777665


Q ss_pred             ccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccc
Q 038407          247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDE  326 (528)
Q Consensus       247 ~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (528)
                      ++                        .+..+..+++|+.|++++|.+.+..+..+..                       
T Consensus        90 ~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------  122 (276)
T 2z62_A           90 SL------------------------ALGAFSGLSSLQKLVAVETNLASLENFPIGH-----------------------  122 (276)
T ss_dssp             EE------------------------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-----------------------
T ss_pred             cc------------------------ChhhhcCCccccEEECCCCCccccCchhccc-----------------------
Confidence            43                        2335667777888888777776543333322                       


Q ss_pred             ccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC-CChhhhccccCCEEeCCCccccccCCccccCCC
Q 038407          327 GFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ-IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLK  405 (528)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  405 (528)
                                                   +++|++|++++|.+.+. +|..+..+++|+.|++++|++++..+..+..++
T Consensus       123 -----------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A          123 -----------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             -----------------------------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence                                         34688888888888753 578888889999999999999877777777777


Q ss_pred             CCC----eeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          406 HIK----SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       406 ~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      +|+    +|++++|++++..+..+.. .+|++|++++|++++..+..+..+++|+.+++++||+.|+|+.
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             hccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            777    8899999998766655544 4799999999999877777777889999999999999999863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=8.4e-29  Score=237.90  Aligned_cols=260  Identities=21%  Similarity=0.216  Sum_probs=160.6

Q ss_pred             CCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEc
Q 038407           41 KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL  120 (528)
Q Consensus        41 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (528)
                      .++..+++.+.+.......+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            3455667777776555555667789999999999999 4554444458999999999999986654  899999999999


Q ss_pred             cCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCcc
Q 038407          121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGK  200 (528)
Q Consensus       121 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~  200 (528)
                      ++|.++ .++     ..++|++|++++|.+++..+.   .+++|++|++++|.+..++                      
T Consensus        88 s~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~----------------------  136 (317)
T 3o53_A           88 NNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR----------------------  136 (317)
T ss_dssp             CSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG----------------------
T ss_pred             cCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc----------------------
Confidence            999998 544     236788888888877753322   2344555555555555443                      


Q ss_pred             CCccccCCCCCCeeecCCceeeccCcccc-cCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccC
Q 038407          201 IPRWLGNLSMLQHIILPENHFEGPIPMEF-CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ  279 (528)
Q Consensus       201 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~  279 (528)
                       +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.++++..                          ...
T Consensus       137 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~  189 (317)
T 3o53_A          137 -DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--------------------------QVV  189 (317)
T ss_dssp             -GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--------------------------CCC
T ss_pred             -chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--------------------------ccc
Confidence             3344444455555555555544433333 245555555555555543311                          112


Q ss_pred             CCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcc
Q 038407          280 LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYL  359 (528)
Q Consensus       280 l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  359 (528)
                      +++|+.|++++|.+++. |+.+..                                                    +++|
T Consensus       190 l~~L~~L~Ls~N~l~~l-~~~~~~----------------------------------------------------l~~L  216 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFM-GPEFQS----------------------------------------------------AAGV  216 (317)
T ss_dssp             CTTCCEEECCSSCCCEE-CGGGGG----------------------------------------------------GTTC
T ss_pred             cccCCEEECCCCcCCcc-hhhhcc----------------------------------------------------cCcc
Confidence            45555555555555422 111111                                                    2356


Q ss_pred             cEEECCCCcCccCCChhhhccccCCEEeCCCcccc-ccCCccccCCCCCCeeeCcCC
Q 038407          360 SELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-GSIPSTFSNLKHIKSLDLSYN  415 (528)
Q Consensus       360 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N  415 (528)
                      ++|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..+++|+.|+++++
T Consensus       217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            66666666665 34555666666666666666666 555666666667777766633

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=2.6e-26  Score=217.00  Aligned_cols=207  Identities=24%  Similarity=0.259  Sum_probs=151.5

Q ss_pred             CCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccce
Q 038407          182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQ  261 (528)
Q Consensus       182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  261 (528)
                      ..++++++++++++.++ .+|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.++++..           
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------   72 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----------   72 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----------
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----------
Confidence            34455566666666555 3333332  456666666666666656666777777777777776654311           


Q ss_pred             eeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccccccee
Q 038407          262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK  341 (528)
Q Consensus       262 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (528)
                                     ...+++|+.|++++|.+. .+|..+..                                      
T Consensus        73 ---------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~--------------------------------------   98 (290)
T 1p9a_G           73 ---------------DGTLPVLGTLDLSHNQLQ-SLPLLGQT--------------------------------------   98 (290)
T ss_dssp             ---------------CSCCTTCCEEECCSSCCS-SCCCCTTT--------------------------------------
T ss_pred             ---------------CCCCCcCCEEECCCCcCC-cCchhhcc--------------------------------------
Confidence                           135667777777777776 44443322                                      


Q ss_pred             eeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccC
Q 038407          342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI  421 (528)
Q Consensus       342 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  421 (528)
                                    +++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus        99 --------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G           99 --------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             --------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence                          346888888888888766778888999999999999999877778888999999999999998766


Q ss_pred             ccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          422 PLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       422 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      +..|..+++|++|++++|+++ .+|..+....+|+.+++.+|||.|+|.+
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            667788999999999999998 6677777788899999999999998854

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=7.3e-26  Score=212.20  Aligned_cols=114  Identities=25%  Similarity=0.316  Sum_probs=93.0

Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      ++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            36777777777777666667788888888888888888776677888888888888888888777777888888888888


Q ss_pred             cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      ++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            8888887766667778888888999999999886

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=4.7e-28  Score=245.95  Aligned_cols=245  Identities=21%  Similarity=0.216  Sum_probs=149.6

Q ss_pred             CCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407          139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE  218 (528)
Q Consensus       139 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  218 (528)
                      +|++|++++|.+++..+..+..+++|++|++++|.+.+.++ +..+++|++|++++|.+++..     ..++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence            67777777777776555666677777777777777665544 666666777777766665321     225666666666


Q ss_pred             ceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                      |.+++..+.   .+++|+.|++++|.+++.                        .|..+..+++|+.|++++|.+++..|
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITML------------------------RDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSG------------------------GGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCC------------------------CchhhcCCCCCCEEECCCCCCCCcCh
Confidence            666644332   235566666666655544                        34445556666666666666655433


Q ss_pred             CCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhh
Q 038407          299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG  378 (528)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  378 (528)
                      ..+..                                                   .+++|+.|+|++|.+++..+  ..
T Consensus       162 ~~l~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~  188 (487)
T 3oja_A          162 AELAA---------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QV  188 (487)
T ss_dssp             GGGGG---------------------------------------------------GTTTCCEEECTTSCCCEEEC--CC
T ss_pred             HHHhh---------------------------------------------------hCCcccEEecCCCccccccc--cc
Confidence            32210                                                   13356666666666664422  23


Q ss_pred             ccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc-cCCCCCCcccCCCCc
Q 038407          379 NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS-GKIPEWTAQFATFNE  457 (528)
Q Consensus       379 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~  457 (528)
                      .+++|+.|+|++|.+++.+| .+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|.++..++.++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~  266 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred             cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence            46677777777777775433 36667777777777777764 4556666777777777777766 444554555555555


Q ss_pred             Cccc-------CCCCCCCCCC
Q 038407          458 SSYE-------GNPFLCGLPL  471 (528)
Q Consensus       458 l~l~-------~Np~~c~~~l  471 (528)
                      +.+.       +||+.|.|+-
T Consensus       267 l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          267 VAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HHHHHHHHHTSSSSCCCSSTT
T ss_pred             EeccccccccCCCcccccCCc
Confidence            5554       7888887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=9.6e-28  Score=229.97  Aligned_cols=205  Identities=23%  Similarity=0.240  Sum_probs=134.8

Q ss_pred             CCCCCEEEccCCcCcccCCccC--CCCCCCCEEEccCCcCCccCcccCCC-----CCCCEEEccCCccCccCCccccCCC
Q 038407          137 CVDLEYLLLSNNSLEGHLFPRN--FNLTNLRRLQLDGNHFREILESLSKC-----SSLEGLYLSDNNLSGKIPRWLGNLS  209 (528)
Q Consensus       137 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~  209 (528)
                      +++|++|++++|.+++..+..+  ..+++|++|++++|.+.+.+..+..+     ++|++|++++|.+.+..+..++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            4555555555555554444443  45666666666666666554433333     6777777777777766667777777


Q ss_pred             CCCeeecCCceeecc--Ccccc--cCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCE
Q 038407          210 MLQHIILPENHFEGP--IPMEF--CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQL  285 (528)
Q Consensus       210 ~L~~L~L~~n~i~~~--~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~  285 (528)
                      +|++|++++|++.+.  .+..+  ..+++|++|++++|+++++...                     ....+..+++|+.
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~~~~~l~~L~~  232 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV---------------------CSALAAARVQLQG  232 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH---------------------HHHHHHTTCCCSE
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH---------------------HHHHHhcCCCCCE
Confidence            777777777776543  22233  6778888888888877643211                     1123456778888


Q ss_pred             EEccCCcCCcCCCC-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEEC
Q 038407          286 IDLSNNILSGHIPP-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDL  364 (528)
Q Consensus       286 L~ls~n~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  364 (528)
                      |++++|.+++..|. .+..                                                    +++|++|++
T Consensus       233 L~Ls~N~l~~~~~~~~~~~----------------------------------------------------l~~L~~L~L  260 (312)
T 1wwl_A          233 LDLSHNSLRDAAGAPSCDW----------------------------------------------------PSQLNSLNL  260 (312)
T ss_dssp             EECTTSCCCSSCCCSCCCC----------------------------------------------------CTTCCEEEC
T ss_pred             EECCCCcCCcccchhhhhh----------------------------------------------------cCCCCEEEC
Confidence            88888887765432 1111                                                    346888888


Q ss_pred             CCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407          365 SYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG  419 (528)
Q Consensus       365 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  419 (528)
                      ++|.++ .+|..+.  ++|+.|+|++|++++. |. +..+++|++|+|++|++++
T Consensus       261 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          261 SFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            888887 5666555  7888888888888865 55 8888888888888888874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.8e-28  Score=233.67  Aligned_cols=248  Identities=22%  Similarity=0.227  Sum_probs=166.2

Q ss_pred             CCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccC-ccCCcccc-------CCCCCCeeecCCceeeccCcccc--c
Q 038407          161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS-GKIPRWLG-------NLSMLQHIILPENHFEGPIPMEF--C  230 (528)
Q Consensus       161 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~i~~~~~~~l--~  230 (528)
                      .++|++|++++|.+ .+|..+...  |+.|++++|.+. ..++..+.       .+++|++|++++|++++..|..+  .
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            34455555555555 444332222  555566655552 23333333       45666666666666665555554  5


Q ss_pred             CCCCCCEEEcccCcccccccchhhhc-----cccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC--CCCCcC
Q 038407          231 QLDSLQILNISDNNISGIYHHASILS-----LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI--PPCLDN  303 (528)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--p~~~~~  303 (528)
                      .+++|++|++++|++++. +..+...     ..+++|++++|++.+..+..+..+++|++|++++|++.+..  |..+. 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC-
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH-
Confidence            666666666666666665 3222222     33466677777777677778889999999999999876431  11110 


Q ss_pred             CccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC---CChhhhcc
Q 038407          304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ---IPPQIGNL  380 (528)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l  380 (528)
                                                                       ...+++|++|++++|.+++.   ....+..+
T Consensus       197 -------------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          197 -------------------------------------------------PLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             -------------------------------------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             -------------------------------------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence                                                             01145799999999998732   22345677


Q ss_pred             ccCCEEeCCCccccccCC-ccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCc
Q 038407          381 TRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS  459 (528)
Q Consensus       381 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~  459 (528)
                      ++|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.++
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS  302 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence            899999999999997764 55677899999999999998 6676665  7899999999999876 66 77889999999


Q ss_pred             ccCCCCCC
Q 038407          460 YEGNPFLC  467 (528)
Q Consensus       460 l~~Np~~c  467 (528)
                      +++|++..
T Consensus       303 L~~N~l~~  310 (312)
T 1wwl_A          303 LKGNPFLD  310 (312)
T ss_dssp             CTTCTTTC
T ss_pred             ccCCCCCC
Confidence            99998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.5e-26  Score=234.89  Aligned_cols=218  Identities=23%  Similarity=0.209  Sum_probs=157.3

Q ss_pred             CCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeec
Q 038407          186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLA  265 (528)
Q Consensus       186 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~  265 (528)
                      +|++|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.++++.+.     ..+++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEEECc
Confidence            45555555555554444455555555555555555544333  44555555555555555444322     233555555


Q ss_pred             cCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeec
Q 038407          266 HNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK  345 (528)
Q Consensus       266 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (528)
                      +|.+++..+.   .+++|+.|++++|.+++..|..+..                                          
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------  142 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------------------------  142 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------------------------------
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------------------------------
Confidence            5555544333   3578999999999998765554433                                          


Q ss_pred             cccccccccccCcccEEECCCCcCccCCChhhh-ccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407          346 NIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG-NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ  424 (528)
Q Consensus       346 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  424 (528)
                                +++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++..+  +..+++|+.|+|++|++++..| .
T Consensus       143 ----------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~  209 (487)
T 3oja_A          143 ----------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-E  209 (487)
T ss_dssp             ----------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-G
T ss_pred             ----------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-h
Confidence                      45899999999999988888876 79999999999999997633  4469999999999999997555 5


Q ss_pred             cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCC
Q 038407          425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGL  469 (528)
Q Consensus       425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~  469 (528)
                      +..+++|+.|++++|++++ +|..+..+++|+.+++++|++.|++
T Consensus       210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            8999999999999999996 6777888999999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.8e-24  Score=203.56  Aligned_cols=225  Identities=21%  Similarity=0.242  Sum_probs=155.5

Q ss_pred             EEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccC
Q 038407           68 LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN  147 (528)
Q Consensus        68 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  147 (528)
                      .++.++..+. .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            3444555555 555543   236777777777776666566677777777777777766 55544445667777777777


Q ss_pred             CcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceeeccC
Q 038407          148 NSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEGPI  225 (528)
Q Consensus       148 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~  225 (528)
                      |.+++..+..+.++++|++|++++|.+..+++ .+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            77766555666777777777777777776655 567777777777777777653 4677777777777777777777666


Q ss_pred             cccccCCCCCC----EEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          226 PMEFCQLDSLQ----ILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       226 ~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                      +..+..+++|+    .|++++|++.++.+..+. ...+++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            66666555555    778888877766554332 2355778888888887777778999999999999999986544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9.2e-28  Score=251.78  Aligned_cols=398  Identities=15%  Similarity=0.104  Sum_probs=239.2

Q ss_pred             hhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCC-CCccc-cCcCccCCCCCCEEEccCCcCccccChhh---
Q 038407           10 FFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNN-SLPGL-FLLPIHCHKSLMLLDVSNNNLQGHIPVKI---   84 (528)
Q Consensus        10 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---   84 (528)
                      ....+++|++|+|++|.+++..+..+...+++|++|+|++| .++.. ++..+..+++|++|++++|.+++..+..+   
T Consensus       100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            34678999999999999887666665557999999999999 45442 33444578999999999998774433322   


Q ss_pred             hhcCCCCceeeccCCc--Ccc-cCCccccCCCCCCEEEccCC-cccccCChhhhhCCCCCCEEEccCCc-------Cccc
Q 038407           85 GDFLPSLKYFNISMNA--FDS-SIPTSFGNMNFLISLDLSNN-QLTGEIPEHLAMGCVDLEYLLLSNNS-------LEGH  153 (528)
Q Consensus        85 ~~~l~~L~~L~L~~n~--i~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~  153 (528)
                      ...+++|++|++++|.  +.. ..+..+.++++|++|++++| .+. .++..+ ..+++|++|+++.+.       +.+ 
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-  256 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLL-QRAPQLEELGTGGYTAEVRPDVYSG-  256 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHH-HHCTTCSEEECSBCCCCCCHHHHHH-
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHH-hcCCcceEcccccccCccchhhHHH-
Confidence            2236799999999986  221 11122345799999999998 444 454444 478899999976553       222 


Q ss_pred             CCccCCCCCCCCEE-EccCCcCCccCcccCCCCCCCEEEccCCccCccC-CccccCCCCCCeeecCCceeecc-Cccccc
Q 038407          154 LFPRNFNLTNLRRL-QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI-PRWLGNLSMLQHIILPENHFEGP-IPMEFC  230 (528)
Q Consensus       154 ~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~-~~~~l~  230 (528)
                      .+..+.++++|+.| .+.+.....++..+..+++|++|++++|.+.+.. ...+..+++|++|++++| +.+. .+....
T Consensus       257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~  335 (594)
T 2p1m_B          257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS  335 (594)
T ss_dssp             HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred             HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence            22345566777776 3443333333333345667777777777654322 122446677777777766 3322 122223


Q ss_pred             CCCCCCEEEccc---------Ccccccccchhhh-ccccceeeeccCcccccCccccc-CCCCCCEEEcc--C----CcC
Q 038407          231 QLDSLQILNISD---------NNISGIYHHASIL-SLSKDQLVLAHNNFEGEVPIQLC-QLNKLQLIDLS--N----NIL  293 (528)
Q Consensus       231 ~l~~L~~L~L~~---------n~l~~~~~~~~~~-~~~~~~L~L~~n~l~~~~~~~l~-~l~~L~~L~ls--~----n~l  293 (528)
                      .+++|++|++.+         +.+++........ ...+++|.+..|.+++.....+. .+++|+.|+++  +    +.+
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence            466777777633         3333222111122 22336666666666654444443 46777777777  2    223


Q ss_pred             CcCCCC--C----CcCCccccccccCCCCCCCCccccccccccccccccccceeeee--ccccccccccccCcccEEECC
Q 038407          294 SGHIPP--C----LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT--KNIAYTYRGRVISYLSELDLS  365 (528)
Q Consensus       294 ~~~~p~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls  365 (528)
                      ++ .|.  .    +...+                              ....+.+..  .+.........+++|+.|+++
T Consensus       416 ~~-~~~~~~~~~l~~~~~------------------------------~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~  464 (594)
T 2p1m_B          416 TL-EPLDIGFGAIVEHCK------------------------------DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA  464 (594)
T ss_dssp             TC-CCTHHHHHHHHHHCT------------------------------TCCEEECCSSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             cC-CchhhHHHHHHhhCC------------------------------CccEEeecCcccHHHHHHHHHhchhccEeecc
Confidence            21 110  0    00000                              000000000  000000111125689999999


Q ss_pred             CCcCccCCChhh-hccccCCEEeCCCccccccCCc-cccCCCCCCeeeCcCCcCcccCcccc-ccCCCCCEEEccCCCCc
Q 038407          366 YNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLDGKIPLQL-VELNTLAVFNVAHNNLS  442 (528)
Q Consensus       366 ~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l~  442 (528)
                      +|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-.
T Consensus       465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            999876555454 6789999999999999754433 44568999999999999965444444 56788877777766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.1e-23  Score=197.21  Aligned_cols=203  Identities=24%  Similarity=0.229  Sum_probs=114.1

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      +.+++++++++++ .+|..+   .+++++|++++|.+++..+..+.++++|++|++++|.++ .++..++..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            3556666666655 455432   245556666666555544445555555555555555555 44444433345555555


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR  175 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  175 (528)
                      +++|+++...+..|..+++|+                         +|++++|.++...+..+..+++|++|++++|.+.
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~-------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLA-------------------------ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCC-------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCcCCHhHcccccCCC-------------------------EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            555555444444444444444                         4444444444433344445555555555555555


Q ss_pred             ccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407          176 EILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       176 ~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      .+++ .+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            5544 355566666666666666655555566666677777777766655555566677777777777776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1e-23  Score=199.25  Aligned_cols=204  Identities=22%  Similarity=0.189  Sum_probs=157.0

Q ss_pred             CCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCE
Q 038407          158 NFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQI  237 (528)
Q Consensus       158 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  237 (528)
                      +.+++++++++++++.++.+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+  ...+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            4466777888888888877776553  578888888888877777778888888888888888875433  267888888


Q ss_pred             EEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCC
Q 038407          238 LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPE  317 (528)
Q Consensus       238 L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~  317 (528)
                      |++++|++..+                         |..+..+++|+.|++++|++++..+..+..              
T Consensus        82 L~Ls~N~l~~l-------------------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------  122 (290)
T 1p9a_G           82 LDLSHNQLQSL-------------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------  122 (290)
T ss_dssp             EECCSSCCSSC-------------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------
T ss_pred             EECCCCcCCcC-------------------------chhhccCCCCCEEECCCCcCcccCHHHHcC--------------
Confidence            88888877633                         334667788888888888887554444443              


Q ss_pred             CCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccC
Q 038407          318 SSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSI  397 (528)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  397 (528)
                                                            +++|++|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus       123 --------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G          123 --------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             --------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             --------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence                                                  347888888888888777777888888899999999888777


Q ss_pred             CccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407          398 PSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG  443 (528)
Q Consensus       398 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  443 (528)
                      +..|..+++|+.|+|++|+++ .+|..+...++|+.+++++|++..
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            777788888999999999888 567777777888999999888864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=8.5e-24  Score=198.27  Aligned_cols=202  Identities=24%  Similarity=0.303  Sum_probs=115.6

Q ss_pred             hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407           37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI  116 (528)
Q Consensus        37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  116 (528)
                      ..+++|++|++++|.++..  ..+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+..|.++++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhcC-CCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3455666666666655432  23555566666666666655 232 2322 55666666666666655555556666666


Q ss_pred             EEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCC
Q 038407          117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDN  195 (528)
Q Consensus       117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n  195 (528)
                      +|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+..+++ .+..+++|++|++++|
T Consensus       113 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            6666666665 4444444455666666666666665444445566666666666666665554 3455666666666666


Q ss_pred             ccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccc
Q 038407          196 NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH  251 (528)
Q Consensus       196 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  251 (528)
                      .+.+..+..+..+++|++|++++|.+.+       .+++|+.+++..|.+.+..+.
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence            6665555555666666666666665542       244566666666666555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.7e-23  Score=193.94  Aligned_cols=183  Identities=20%  Similarity=0.270  Sum_probs=106.6

Q ss_pred             CCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccce
Q 038407          182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQ  261 (528)
Q Consensus       182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  261 (528)
                      ..+++|+.|++++|.+.. . ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.++++             
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-------------  100 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-------------  100 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-------------
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-------------
Confidence            345566666666665542 1 2355566666666666665532  2455556666666555555432             


Q ss_pred             eeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccccccee
Q 038407          262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK  341 (528)
Q Consensus       262 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (528)
                                 .+..+..+++|++|++++|.+++..+..+..                                      
T Consensus       101 -----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------  131 (272)
T 3rfs_A          101 -----------PNGVFDKLTNLKELVLVENQLQSLPDGVFDK--------------------------------------  131 (272)
T ss_dssp             -----------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------------------------
T ss_pred             -----------ChhHhcCCcCCCEEECCCCcCCccCHHHhcc--------------------------------------
Confidence                       2234556666666666666666443333332                                      


Q ss_pred             eeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccC
Q 038407          342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI  421 (528)
Q Consensus       342 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  421 (528)
                                    +++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|+.+++|++|++++|++++..
T Consensus       132 --------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          132 --------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             --------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence                          235666666666666555555566666666666666666555555666666666666666666655


Q ss_pred             ccccccCCCCCEEEccCCCCccC
Q 038407          422 PLQLVELNTLAVFNVAHNNLSGK  444 (528)
Q Consensus       422 ~~~~~~l~~L~~L~ls~N~l~~~  444 (528)
                      +..+..+++|++|++++|++.+.
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCC
T ss_pred             HHHHhCCcCCCEEEccCCCcccc
Confidence            55566666666666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=8e-23  Score=189.27  Aligned_cols=180  Identities=19%  Similarity=0.261  Sum_probs=129.8

Q ss_pred             CCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEcc
Q 038407          210 MLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS  289 (528)
Q Consensus       210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls  289 (528)
                      ..++++++++.++ .+|..+.  ++++.|++++|.+.+                        ..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~L~   67 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT------------------------LSDATFRGLTKLTWLNLD   67 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC------------------------CCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc------------------------cCHhHhcCcccCCEEECC
Confidence            3456666666666 3444332  456666666666554                        444557777888888888


Q ss_pred             CCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcC
Q 038407          290 NNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL  369 (528)
Q Consensus       290 ~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  369 (528)
                      +|.+++..+..+..                                                    +++|++|++++|.+
T Consensus        68 ~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~n~l   95 (251)
T 3m19_A           68 YNQLQTLSAGVFDD----------------------------------------------------LTELGTLGLANNQL   95 (251)
T ss_dssp             TSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECTTSCC
T ss_pred             CCcCCccCHhHhcc----------------------------------------------------CCcCCEEECCCCcc
Confidence            88777655544433                                                    33688888888888


Q ss_pred             ccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCC
Q 038407          370 IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT  449 (528)
Q Consensus       370 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~  449 (528)
                      ++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence            76666777788888888888888887666677788888888888888886666677788888888888888887777677


Q ss_pred             cccCCCCcCcccCCCCCCC
Q 038407          450 AQFATFNESSYEGNPFLCG  468 (528)
Q Consensus       450 ~~~~~l~~l~l~~Np~~c~  468 (528)
                      ..+++|+.+++++|||.|+
T Consensus       176 ~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          176 DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSCCBCTT
T ss_pred             hCCCCCCEEEeeCCceeCC
Confidence            7778888888888888887

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=2.7e-23  Score=191.04  Aligned_cols=197  Identities=18%  Similarity=0.189  Sum_probs=122.7

Q ss_pred             CCCEEEccCCccCccCCccccCCCCCCeeecCCce-eeccCcccccCCCCCCEEEccc-Ccccccccchhhhccccceee
Q 038407          186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH-FEGPIPMEFCQLDSLQILNISD-NNISGIYHHASILSLSKDQLV  263 (528)
Q Consensus       186 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~  263 (528)
                      ++++|++++|.+++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |+++++               
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i---------------   96 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI---------------   96 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE---------------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc---------------
Confidence            56666666666665555556666666666666665 5555555666666666666665 555433               


Q ss_pred             eccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeee
Q 038407          264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT  343 (528)
Q Consensus       264 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (528)
                               .+..|..+++|+.|++++|.+++ +|. +..                                        
T Consensus        97 ---------~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~----------------------------------------  125 (239)
T 2xwt_C           97 ---------DPDALKELPLLKFLGIFNTGLKM-FPD-LTK----------------------------------------  125 (239)
T ss_dssp             ---------CTTSEECCTTCCEEEEEEECCCS-CCC-CTT----------------------------------------
T ss_pred             ---------CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccc----------------------------------------
Confidence                     22345566667777777766653 333 222                                        


Q ss_pred             eccccccccccccCccc---EEECCCC-cCccCCChhhhccccCC-EEeCCCccccccCCccccCCCCCCeeeCcCCc-C
Q 038407          344 TKNIAYTYRGRVISYLS---ELDLSYN-KLIGQIPPQIGNLTRIQ-TLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK-L  417 (528)
Q Consensus       344 ~~~~~~~~~~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l  417 (528)
                                  +++|+   +|++++| .+++..+..|..+++|+ .|++++|+++...+..|.. ++|++|++++|+ +
T Consensus       126 ------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          126 ------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL  192 (239)
T ss_dssp             ------------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred             ------------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence                        12343   7777777 67655556677777777 7777777777444444554 677777777774 7


Q ss_pred             cccCccccccC-CCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCC
Q 038407          418 DGKIPLQLVEL-NTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNP  464 (528)
Q Consensus       418 ~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np  464 (528)
                      +++.+..|..+ ++|++|++++|++++..+.   .++.++.+.+.+++
T Consensus       193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             ccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            76666667777 7777777777777743333   45666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.3e-24  Score=213.07  Aligned_cols=243  Identities=17%  Similarity=0.163  Sum_probs=155.7

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCC---ccccCcCc-------cCCCCCCEEEcc
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSL---PGLFLLPI-------HCHKSLMLLDVS   72 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~---~~~~~~~~-------~~~~~L~~L~ls   72 (528)
                      .++.++..+++|++|+|++|.+++..+..+   +..+++|++|+|++|.+   ++.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            466777777888888888887765433221   45677888888877533   33334333       567788888888


Q ss_pred             CCcCcc----ccChhhhhcCCCCceeeccCCcCcccCCcccc----CC---------CCCCEEEccCCccc-ccCCh--h
Q 038407           73 NNNLQG----HIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG----NM---------NFLISLDLSNNQLT-GEIPE--H  132 (528)
Q Consensus        73 ~n~l~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~~--~  132 (528)
                      +|.+++    .++..+.. +++|++|++++|.++...+..+.    .+         ++|++|++++|+++ ..++.  .
T Consensus       103 ~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            887774    24444444 67788888888877643333332    33         77788888777775 23331  2


Q ss_pred             hhhCCCCCCEEEccCCcCcc-----cCCccCCCCCCCCEEEccCCcCC-----ccCcccCCCCCCCEEEccCCccCcc--
Q 038407          133 LAMGCVDLEYLLLSNNSLEG-----HLFPRNFNLTNLRRLQLDGNHFR-----EILESLSKCSSLEGLYLSDNNLSGK--  200 (528)
Q Consensus       133 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~--  200 (528)
                      .+..+++|++|++++|+++.     ..+..+..+++|++|++++|.++     .++..+..+++|++|++++|.+++.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            23356777778887777762     12225667777777777777773     3444666777777777777777644  


Q ss_pred             --CCcccc--CCCCCCeeecCCceeec----cCcccc-cCCCCCCEEEcccCcccccc
Q 038407          201 --IPRWLG--NLSMLQHIILPENHFEG----PIPMEF-CQLDSLQILNISDNNISGIY  249 (528)
Q Consensus       201 --~~~~l~--~l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~  249 (528)
                        ++..+.  .+++|++|++++|.+++    .++..+ ..+++|++|++++|++++..
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              344453  36777777777777775    355555 45677777777777776554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=7.2e-23  Score=188.19  Aligned_cols=206  Identities=17%  Similarity=0.182  Sum_probs=162.7

Q ss_pred             cCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhcCCCCceeeccC-CcCcc
Q 038407           26 NLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDFLPSLKYFNISM-NAFDS  103 (528)
Q Consensus        26 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~i~~  103 (528)
                      +++ .+|. +   .++|++|++++|++++..+..+.++++|++|++++|+ ++ .++...+..+++|++|++++ |.++.
T Consensus        22 ~l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           22 DIQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             SCS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCE
T ss_pred             Ccc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeE
Confidence            343 6776 2   3478899999999888777788888999999999987 76 66665555588999999988 88887


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC---EEEccCC-cCcccCCccCCCCCCCC-EEEccCCcCCccC
Q 038407          104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE---YLLLSNN-SLEGHLFPRNFNLTNLR-RLQLDGNHFREIL  178 (528)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~  178 (528)
                      ..+..|.++++|++|++++|+++ .+|.  +..+++|+   +|++++| .++...+..+.++++|+ +|++++|.+..++
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             cCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence            77788888999999999999888 5776  45778887   8999988 88876666688888898 9999999888877


Q ss_pred             cccCCCCCCCEEEccCCc-cCccCCccccCC-CCCCeeecCCceeeccCcccccCCCCCCEEEcccC
Q 038407          179 ESLSKCSSLEGLYLSDNN-LSGKIPRWLGNL-SMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN  243 (528)
Q Consensus       179 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  243 (528)
                      ......++|++|++++|+ ++...+..|..+ ++|++|++++|++++. |..  .+++|+.|+++++
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            643333788899999884 876667778888 8899999998888844 333  5678888888765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=3.7e-23  Score=197.91  Aligned_cols=226  Identities=19%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             CCCCEEEccCCcCcccCChhh--hhcCCCCCEEEccCCCCccccCcCc--cCCCCCCEEEccCCcCccccC----hhhhh
Q 038407           15 HDLEFVRLSHLNLNGEFPNWL--LENNTKLESNFLLNNSLPGLFLLPI--HCHKSLMLLDVSNNNLQGHIP----VKIGD   86 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~----~~~~~   86 (528)
                      ..++.+.+.++.++...-..+  +..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            346667776666542111111  1234567777777777777766666  677777777777777764333    1222 


Q ss_pred             cCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCccccc--CC-hhhhhCCCCCCEEEccCCcCcccCCc----cCC
Q 038407           87 FLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE--IP-EHLAMGCVDLEYLLLSNNSLEGHLFP----RNF  159 (528)
Q Consensus        87 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~  159 (528)
                      .+++|++|++++|++.+..+..|.++++|++|++++|++.+.  ++ ...+..+++|++|++++|+++. .+.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            366777777777777766667777777777777777776421  11 1112356677777777777653 111    134


Q ss_pred             CCCCCCEEEccCCcCCcc-CcccCCC---CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCC
Q 038407          160 NLTNLRRLQLDGNHFREI-LESLSKC---SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL  235 (528)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~-~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  235 (528)
                      .+++|++|++++|++... |+.+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            567777777777777766 3344443   57777777777776 4455443  5677777777777643 22 4566777


Q ss_pred             CEEEcccCcccc
Q 038407          236 QILNISDNNISG  247 (528)
Q Consensus       236 ~~L~L~~n~l~~  247 (528)
                      +.|++++|++++
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            777777776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4e-24  Score=209.23  Aligned_cols=247  Identities=19%  Similarity=0.144  Sum_probs=157.8

Q ss_pred             CccccCchhhhCCCCCCEEEccCCcCcccCCh---hhhhcCC-CCCEEEccCCCCccccCcCccCC-----CCCCEEEcc
Q 038407            2 DVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPN---WLLENNT-KLESNFLLNNSLPGLFLLPIHCH-----KSLMLLDVS   72 (528)
Q Consensus         2 ~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~ls   72 (528)
                      +++|.+|..+...++|++|+|++|.+++..+.   ..|.+++ +|++|+|++|.+++..+..+..+     ++|++|+++
T Consensus         9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls   88 (362)
T 3goz_A            9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS   88 (362)
T ss_dssp             TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred             cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence            35667777777777788888888887643331   3356777 78888888888877655555443     788888888


Q ss_pred             CCcCccccChhhhhc---C-CCCceeeccCCcCcccCCcccc----C-CCCCCEEEccCCcccccCChhh---hhCCC-C
Q 038407           73 NNNLQGHIPVKIGDF---L-PSLKYFNISMNAFDSSIPTSFG----N-MNFLISLDLSNNQLTGEIPEHL---AMGCV-D  139 (528)
Q Consensus        73 ~n~l~~~~~~~~~~~---l-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~~~~---~~~l~-~  139 (528)
                      +|.+++..+..+...   + ++|++|++++|.+++..+..+.    . .++|++|++++|.+++.....+   +...+ +
T Consensus        89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  168 (362)
T 3goz_A           89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN  168 (362)
T ss_dssp             SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred             CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence            888775444433331   2 6788888888887765544432    3 2578888888887764332222   12333 7


Q ss_pred             CCEEEccCCcCcccCCccC----CCC-CCCCEEEccCCcCCc-----cCcccCC-CCCCCEEEccCCccCccCC----cc
Q 038407          140 LEYLLLSNNSLEGHLFPRN----FNL-TNLRRLQLDGNHFRE-----ILESLSK-CSSLEGLYLSDNNLSGKIP----RW  204 (528)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~-----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~  204 (528)
                      |++|++++|.+++..+..+    ... ++|++|++++|.+..     ++..+.. .++|++|++++|.+.+..+    ..
T Consensus       169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  248 (362)
T 3goz_A          169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL  248 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred             ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence            8888888887775443322    234 478888888887776     3333433 3477888888887765433    23


Q ss_pred             ccCCCCCCeeecCCceeecc-------CcccccCCCCCCEEEcccCccccc
Q 038407          205 LGNLSMLQHIILPENHFEGP-------IPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       205 l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      +..+++|++|++++|.+.+.       ++..+..+++|+.|++++|++...
T Consensus       249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            45567778888877774322       223456667777777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=9.6e-24  Score=206.56  Aligned_cols=260  Identities=17%  Similarity=0.134  Sum_probs=192.0

Q ss_pred             EEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccC----cCccCCC-CCCEEEccCCcCccccChhhhhc----CC
Q 038407           19 FVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFL----LPIHCHK-SLMLLDVSNNNLQGHIPVKIGDF----LP   89 (528)
Q Consensus        19 ~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~----l~   89 (528)
                      ++++++|++++.+|.. +...++|++|+|++|.+++..+    ..+..++ +|++|++++|.+++..+..+...    .+
T Consensus         2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            5789999999777764 4556669999999999988766    6778888 89999999999986555555542    28


Q ss_pred             CCceeeccCCcCcccCCcc----ccCC-CCCCEEEccCCcccccCChhhh---hC-CCCCCEEEccCCcCcccCCcc---
Q 038407           90 SLKYFNISMNAFDSSIPTS----FGNM-NFLISLDLSNNQLTGEIPEHLA---MG-CVDLEYLLLSNNSLEGHLFPR---  157 (528)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~~---~~-l~~L~~L~l~~n~l~~~~~~~---  157 (528)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.   .. .++|++|++++|.+++.....   
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999999998766654    4444 8999999999999843333322   22 368999999999988533322   


Q ss_pred             -CCCCC-CCCEEEccCCcCCccCc-----ccCCC-CCCCEEEccCCccCcc----CCccccC-CCCCCeeecCCceeecc
Q 038407          158 -NFNLT-NLRRLQLDGNHFREILE-----SLSKC-SSLEGLYLSDNNLSGK----IPRWLGN-LSMLQHIILPENHFEGP  224 (528)
Q Consensus       158 -~~~l~-~L~~L~l~~n~~~~~~~-----~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~i~~~  224 (528)
                       +...+ +|++|++++|.+.....     .+..+ ++|++|++++|.+.+.    ++..+.. .++|++|++++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             33444 89999999999876654     34455 4899999999988753    3444544 45899999999998865


Q ss_pred             Cc----ccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC
Q 038407          225 IP----MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH  296 (528)
Q Consensus       225 ~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  296 (528)
                      .+    ..+..+++|+.|++++|.+.++.+...                 ..++..+..+++|+.||+++|.+.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-----------------KALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-----------------HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHH-----------------HHHHHHhccCCceEEEecCCCcCCCc
Confidence            44    345677889999999998665543311                 12334677888999999999988754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=3.7e-22  Score=190.44  Aligned_cols=195  Identities=19%  Similarity=0.309  Sum_probs=136.4

Q ss_pred             hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407           37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI  116 (528)
Q Consensus        37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  116 (528)
                      ..+++|++|++++|.++.. + .+..+++|++|++++|.+. .++. +. .+++|++|++++|.+++.  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            4566777777777766643 2 4666777777777777776 4444 33 367777777777777643  3567777777


Q ss_pred             EEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCc
Q 038407          117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN  196 (528)
Q Consensus       117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~  196 (528)
                      +|++++|.++ .++.  +..+++|++|++++|.+++..  .+..+++|++|++++|.+..+++ +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence            7777777776 4543  346777777777777777532  26677778888888887777655 7777888888888887


Q ss_pred             cCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407          197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       197 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      +++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++.
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            774432  677788888888888887554  367788888888888887664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.3e-24  Score=213.10  Aligned_cols=247  Identities=20%  Similarity=0.201  Sum_probs=179.0

Q ss_pred             cCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCc---CccccChhhh------hcCCCCceeec
Q 038407           30 EFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNN---LQGHIPVKIG------DFLPSLKYFNI   96 (528)
Q Consensus        30 ~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~------~~l~~L~~L~L   96 (528)
                      .++.. +..+++|++|+|++|.++..    ++..+..+++|++|++++|.   +++.+|..+.      ..+++|++|++
T Consensus        23 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            45555 57899999999999999875    34457889999999999964   4445555542      34789999999


Q ss_pred             cCCcCcc----cCCccccCCCCCCEEEccCCcccccCChhhhh---CC---------CCCCEEEccCCcCccc-CC---c
Q 038407           97 SMNAFDS----SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM---GC---------VDLEYLLLSNNSLEGH-LF---P  156 (528)
Q Consensus        97 ~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l---------~~L~~L~l~~n~l~~~-~~---~  156 (528)
                      ++|.+..    .++..+..+++|++|++++|.+++..+..+..   .+         ++|++|++++|+++.. .+   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9999986    46677888999999999999886333322221   22         7899999999988732 22   2


Q ss_pred             cCCCCCCCCEEEccCCcCCc-----cCc-ccCCCCCCCEEEccCCccC----ccCCccccCCCCCCeeecCCceeecc--
Q 038407          157 RNFNLTNLRRLQLDGNHFRE-----ILE-SLSKCSSLEGLYLSDNNLS----GKIPRWLGNLSMLQHIILPENHFEGP--  224 (528)
Q Consensus       157 ~~~~l~~L~~L~l~~n~~~~-----~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~i~~~--  224 (528)
                      .+..+++|++|++++|.+..     +.+ .+..+++|+.|++++|.++    ..++..+..+++|++|++++|.+++.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            45577888899999888872     223 6777888888888888885    45667778888888888888888755  


Q ss_pred             --Cccccc--CCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccc-cCCCCCCEEEccCCcCCcCC
Q 038407          225 --IPMEFC--QLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL-CQLNKLQLIDLSNNILSGHI  297 (528)
Q Consensus       225 --~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~  297 (528)
                        ++..+.  .+++|++|++++|.+++....                    .++..+ .++++|+.|++++|++++..
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--------------------~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVR--------------------TLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--------------------HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHH--------------------HHHHHHHhcCCCceEEEccCCcCCcch
Confidence              445553  378888888888887652100                    133334 45788888888888877543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=4.6e-22  Score=189.81  Aligned_cols=195  Identities=22%  Similarity=0.269  Sum_probs=151.3

Q ss_pred             hhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCC
Q 038407           11 FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPS   90 (528)
Q Consensus        11 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~   90 (528)
                      +..+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++ .+.. +++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCC
Confidence            356778888888888886 5663  5788888888888888876554  788888888888888887 454 3443 788


Q ss_pred             CceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407           91 LKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD  170 (528)
Q Consensus        91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  170 (528)
                      |++|++++|++++..  .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++. +. +..+++|++|+++
T Consensus       109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD  181 (308)
T ss_dssp             CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence            888888888887542  3788888888888888887 5554  45688888888888888863 22 7788888888888


Q ss_pred             CCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407          171 GNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       171 ~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                      +|.+..+++ +..+++|++|++++|.+.+..  .+..+++|+.|++++|.+++
T Consensus       182 ~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          182 DNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            888887765 677888888888888887544  37788888888888888874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=6.5e-23  Score=196.18  Aligned_cols=205  Identities=22%  Similarity=0.215  Sum_probs=169.5

Q ss_pred             CCCCCCEEEccCCcCcccCChhhh-hcCCCCCEEEccCCCCccccC----cCccCCCCCCEEEccCCcCccccChhhhhc
Q 038407           13 HQHDLEFVRLSHLNLNGEFPNWLL-ENNTKLESNFLLNNSLPGLFL----LPIHCHKSLMLLDVSNNNLQGHIPVKIGDF   87 (528)
Q Consensus        13 ~~~~L~~L~Ls~~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~   87 (528)
                      .+++|++|++++|.+.+..|..++ ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+. .++...+..
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~  167 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRA  167 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhcc
Confidence            457799999999999988887654 789999999999999987544    34457899999999999998 455444445


Q ss_pred             CCCCceeeccCCcCccc---C-CccccCCCCCCEEEccCCcccccCChh---hhhCCCCCCEEEccCCcCcccCCccCCC
Q 038407           88 LPSLKYFNISMNAFDSS---I-PTSFGNMNFLISLDLSNNQLTGEIPEH---LAMGCVDLEYLLLSNNSLEGHLFPRNFN  160 (528)
Q Consensus        88 l~~L~~L~L~~n~i~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~  160 (528)
                      +++|++|++++|++.+.   . +..+..+++|++|++++|+++ .++..   ++..+++|++|++++|++++..|+.+..
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~  246 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR  246 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence            89999999999998642   2 234578999999999999997 55543   4567899999999999999876777766


Q ss_pred             C---CCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407          161 L---TNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       161 l---~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                      +   ++|++|++++|+++.+|..+.  ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus       247 ~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            5   799999999999999887664  8999999999999854 43 6788999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.3e-23  Score=202.11  Aligned_cols=223  Identities=17%  Similarity=0.171  Sum_probs=175.9

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcC--CCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccc-cChhhhhcCCCC
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENN--TKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH-IPVKIGDFLPSL   91 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L   91 (528)
                      ..++.++++++.+.   + ..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+. .+++|
T Consensus        47 ~~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCC
T ss_pred             hhheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCC
Confidence            34889999998776   2 334566  8999999999999877655 55789999999999998754 544444 48999


Q ss_pred             ceeeccCCcCcccCCccccCCCCCCEEEccCC-cccccCChhhhhCCCCCCEEEccCC-cCccc-CCccCCCCC-CCCEE
Q 038407           92 KYFNISMNAFDSSIPTSFGNMNFLISLDLSNN-QLTGEIPEHLAMGCVDLEYLLLSNN-SLEGH-LFPRNFNLT-NLRRL  167 (528)
Q Consensus        92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L  167 (528)
                      ++|++++|.+++..+..+..+++|++|++++| .+++......+.++++|++|++++| .+++. .+..+..++ +|++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            99999999998878888999999999999999 5764222333457899999999999 88753 345567788 99999


Q ss_pred             EccCCc--CC--ccCcccCCCCCCCEEEccCCc-cCccCCccccCCCCCCeeecCCce-eeccCcccccCCCCCCEEEcc
Q 038407          168 QLDGNH--FR--EILESLSKCSSLEGLYLSDNN-LSGKIPRWLGNLSMLQHIILPENH-FEGPIPMEFCQLDSLQILNIS  241 (528)
Q Consensus       168 ~l~~n~--~~--~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~  241 (528)
                      ++++|.  ++  .++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            999994  43  344466778999999999998 666777788889999999999984 433333367889999999999


Q ss_pred             cC
Q 038407          242 DN  243 (528)
Q Consensus       242 ~n  243 (528)
                      +|
T Consensus       281 ~~  282 (336)
T 2ast_B          281 GI  282 (336)
T ss_dssp             TS
T ss_pred             Cc
Confidence            88

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.6e-23  Score=203.22  Aligned_cols=252  Identities=19%  Similarity=0.213  Sum_probs=163.1

Q ss_pred             CCCEEEccCCcccccCChhhhhCC--CCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCc--cCcccCCCCCCCE
Q 038407          114 FLISLDLSNNQLTGEIPEHLAMGC--VDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE--ILESLSKCSSLEG  189 (528)
Q Consensus       114 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~  189 (528)
                      .++.++++++.+.   + ..+..+  +.++.|++++|.+.+..+ .+..+++|++|++++|.+..  ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4788888888765   2 222344  678888888888876443 35567888888888887764  3445677778888


Q ss_pred             EEccCCccCccCCccccCCCCCCeeecCCc-eeecc-CcccccCCCCCCEEEcccC-cccccccchhhhccccceeeecc
Q 038407          190 LYLSDNNLSGKIPRWLGNLSMLQHIILPEN-HFEGP-IPMEFCQLDSLQILNISDN-NISGIYHHASILSLSKDQLVLAH  266 (528)
Q Consensus       190 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~i~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~L~~  266 (528)
                      |++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.                  
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------  184 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------  184 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence            888887777666667777777888888777 56542 4555667777777777777 66532                  


Q ss_pred             CcccccCcccccCCC-CCCEEEccCCc--CCc-CCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceee
Q 038407          267 NNFEGEVPIQLCQLN-KLQLIDLSNNI--LSG-HIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF  342 (528)
Q Consensus       267 n~l~~~~~~~l~~l~-~L~~L~ls~n~--l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (528)
                           .++..+..++ +|++|++++|.  +++ .+|..+                                         
T Consensus       185 -----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-----------------------------------------  218 (336)
T 2ast_B          185 -----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-----------------------------------------  218 (336)
T ss_dssp             -----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-----------------------------------------
T ss_pred             -----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-----------------------------------------
Confidence                 1233455677 78888888773  321 111100                                         


Q ss_pred             eeccccccccccccCcccEEECCCCc-CccCCChhhhccccCCEEeCCCcc-ccccCCccccCCCCCCeeeCcCCcCccc
Q 038407          343 TTKNIAYTYRGRVISYLSELDLSYNK-LIGQIPPQIGNLTRIQTLNLSYNN-LTGSIPSTFSNLKHIKSLDLSYNKLDGK  420 (528)
Q Consensus       343 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  420 (528)
                                 ..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++| ++..
T Consensus       219 -----------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          219 -----------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             -----------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             -----------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence                       114567788888777 555666677777888888888874 22222225677788888888877 4322


Q ss_pred             CccccccC-CCCCEEEccCCCCccCCCCCC
Q 038407          421 IPLQLVEL-NTLAVFNVAHNNLSGKIPEWT  449 (528)
Q Consensus       421 ~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~  449 (528)
                         .+..+ .++..|++++|++++..|...
T Consensus       287 ---~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          287 ---TLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             ---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             ---HHHHHHhhCcceEEecccCccccCCcc
Confidence               23333 235566678888877777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.1e-21  Score=179.65  Aligned_cols=179  Identities=22%  Similarity=0.279  Sum_probs=138.4

Q ss_pred             CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407           65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL  144 (528)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  144 (528)
                      ..++++++++.++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence            4567777777776 6665543   47778888888887777777777888888888888877 45555555777888888


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407          145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                      +++|.+++..+..+..+++|++|++++|.+..+++ .+..+++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            88888876666667778888888888888887776 46778888888888888886666678888888888888888887


Q ss_pred             cCcccccCCCCCCEEEcccCccccc
Q 038407          224 PIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       224 ~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      ..+..+..+++|+.|++++|++...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7777788888899999998888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=7.7e-22  Score=191.99  Aligned_cols=241  Identities=19%  Similarity=0.133  Sum_probs=186.8

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce-eec
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY-FNI   96 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~-L~L   96 (528)
                      ++++.++++++ ++|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.++...+..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            67888888887 889765   3689999999999998777889999999999999999876788777766778765 667


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccC-CcCcccCCccCCCCC-CCCEEEccCCcC
Q 038407           97 SMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN-NSLEGHLFPRNFNLT-NLRRLQLDGNHF  174 (528)
Q Consensus        97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~  174 (528)
                      ++|+++.+.|..|.++++|++|++++|++. .++...+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            789999888999999999999999999998 67766555667788888865 567665555666654 688899999999


Q ss_pred             CccCcccCCCCCCCEEEccC-CccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407          175 REILESLSKCSSLEGLYLSD-NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS  253 (528)
Q Consensus       175 ~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (528)
                      +.+++......+|+++++++ |.++...++.|..+++|++|++++|+++...+..   +.+|+.|.+.++.--       
T Consensus       167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l-------  236 (350)
T 4ay9_X          167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNL-------  236 (350)
T ss_dssp             CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTC-------
T ss_pred             cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCc-------
Confidence            98887665667889999875 5666444567888899999999999988544433   456666665544211       


Q ss_pred             hhccccceeeeccCcccccCcccccCCCCCCEEEccCC
Q 038407          254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN  291 (528)
Q Consensus       254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n  291 (528)
                                       ..+| .+..+++|+.++++++
T Consensus       237 -----------------~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          237 -----------------KKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -----------------CCCC-CTTTCCSCCEEECSCH
T ss_pred             -----------------CcCC-CchhCcChhhCcCCCC
Confidence                             1233 3677889999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=2e-21  Score=175.62  Aligned_cols=158  Identities=21%  Similarity=0.267  Sum_probs=132.8

Q ss_pred             ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccc
Q 038407          260 DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET  339 (528)
Q Consensus       260 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (528)
                      +.++++++.++. +|..+.  ++++.|++++|.+++..+..+..                                    
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------   54 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------   54 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence            345555555543 333332  67899999999988655544443                                    


Q ss_pred             eeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407          340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG  419 (528)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  419 (528)
                                      +++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++
T Consensus        55 ----------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           55 ----------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             ----------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                            3479999999999998889999999999999999999997777788999999999999999999


Q ss_pred             cCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          420 KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       420 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ..|..|..+++|++|++++|++++..+..+..+++|+.+++++|||.|+|++.
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            88999999999999999999999888888888999999999999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=3.5e-21  Score=187.31  Aligned_cols=240  Identities=19%  Similarity=0.133  Sum_probs=124.0

Q ss_pred             CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCc-cCc-ccCCCCCCCE-EEc
Q 038407          116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE-ILE-SLSKCSSLEG-LYL  192 (528)
Q Consensus       116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~-~~~~l~~L~~-L~L  192 (528)
                      ++++.++++++ .+|..++   +++++|++++|+|+...+..|.++++|++|+|++|++.+ ++. .|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45566666666 6665442   345666666666654433445555555555555555533 222 3445555443 333


Q ss_pred             cCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCccccc
Q 038407          193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGE  272 (528)
Q Consensus       193 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~  272 (528)
                      .+|++....+..|..+++|++|++++|+++...+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            344554444444555555555555555554333333333334444444321                       233333


Q ss_pred             CcccccCCC-CCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccc
Q 038407          273 VPIQLCQLN-KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY  351 (528)
Q Consensus       273 ~~~~l~~l~-~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (528)
                      .+..|..+. .++.|++++|+++...+..+.                                                 
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-------------------------------------------------  175 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFN-------------------------------------------------  175 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSST-------------------------------------------------
T ss_pred             cccchhhcchhhhhhccccccccCCChhhcc-------------------------------------------------
Confidence            333444443 466777777777632222221                                                 


Q ss_pred             cccccCcccEEECCC-CcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCC
Q 038407          352 RGRVISYLSELDLSY-NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNT  430 (528)
Q Consensus       352 ~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  430 (528)
                          ..+|++|++++ |.++.+.+..|..+++|+.|+|++|+++...+..|.+   |+.|.+.++.-...+| .+..+++
T Consensus       176 ----~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~  247 (350)
T 4ay9_X          176 ----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVA  247 (350)
T ss_dssp             ----TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCS
T ss_pred             ----ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcC
Confidence                12466777764 5555444456677777777777777777554444443   3444433333333455 3666777


Q ss_pred             CCEEEccCC
Q 038407          431 LAVFNVAHN  439 (528)
Q Consensus       431 L~~L~ls~N  439 (528)
                      |+.++++++
T Consensus       248 L~~l~l~~~  256 (350)
T 4ay9_X          248 LMEASLTYP  256 (350)
T ss_dssp             CCEEECSCH
T ss_pred             hhhCcCCCC
Confidence            777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=7e-21  Score=172.07  Aligned_cols=117  Identities=18%  Similarity=0.282  Sum_probs=104.6

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            45789999999999877777899999999999999999988888899999999999999999988888899999999999


Q ss_pred             ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      +++|++++..|..+..+++|+.+++++|||.|+|++.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            9999999888888888999999999999999998753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=2e-21  Score=189.77  Aligned_cols=181  Identities=20%  Similarity=0.205  Sum_probs=138.9

Q ss_pred             CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCccccc-CCCCCCEEEccC
Q 038407          212 QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC-QLNKLQLIDLSN  290 (528)
Q Consensus       212 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~-~l~~L~~L~ls~  290 (528)
                      +.++++++.++ .+|..+  .+.++.|++++|++++                        ..+..+. .+++|+.|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~------------------------l~~~~~~~~l~~L~~L~L~~   73 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR------------------------LRAEWTPTRLTNLHSLLLSH   73 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCE------------------------ECTTSSSSCCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCc------------------------cChhhhhhcccccCEEECCC
Confidence            45666666666 344433  2345666666665554                        4444566 789999999999


Q ss_pred             CcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCc
Q 038407          291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI  370 (528)
Q Consensus       291 n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  370 (528)
                      |++++..+..+..                                                    +++|++|+|++|+++
T Consensus        74 N~i~~i~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l~  101 (361)
T 2xot_A           74 NHLNFISSEAFVP----------------------------------------------------VPNLRYLDLSSNHLH  101 (361)
T ss_dssp             SCCCEECTTTTTT----------------------------------------------------CTTCCEEECCSSCCC
T ss_pred             CcCCccChhhccC----------------------------------------------------CCCCCEEECCCCcCC
Confidence            9988665555544                                                    347999999999999


Q ss_pred             cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccc---ccCCCCCEEEccCCCCccCCCC
Q 038407          371 GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQL---VELNTLAVFNVAHNNLSGKIPE  447 (528)
Q Consensus       371 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~p~  447 (528)
                      +..+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|   ..+++|+.|+|++|++++..+.
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence            7777789999999999999999998888999999999999999999996555555   5689999999999999966555


Q ss_pred             CCcccCC--CCcCcccCCCCCCCCCC
Q 038407          448 WTAQFAT--FNESSYEGNPFLCGLPL  471 (528)
Q Consensus       448 ~~~~~~~--l~~l~l~~Np~~c~~~l  471 (528)
                      .+..++.  ++.+++.+|||.|+|++
T Consensus       182 ~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             HhhhccHhhcceEEecCCCccCCcCc
Confidence            5556665  47899999999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=4.7e-20  Score=167.80  Aligned_cols=155  Identities=24%  Similarity=0.322  Sum_probs=129.0

Q ss_pred             ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccc
Q 038407          260 DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET  339 (528)
Q Consensus       260 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (528)
                      +.++.+++.++ .+|..+  .++|+.|++++|.+++..|..+..                                    
T Consensus        22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~------------------------------------   62 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDS------------------------------------   62 (229)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred             CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhC------------------------------------
Confidence            44555555554 333333  278999999999998766666544                                    


Q ss_pred             eeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407          340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG  419 (528)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  419 (528)
                                      +++|++|++++|.+....+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ 
T Consensus        63 ----------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-  125 (229)
T 3e6j_A           63 ----------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-  125 (229)
T ss_dssp             ----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ----------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence                            347999999999998666677899999999999999999887888899999999999999998 


Q ss_pred             cCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          420 KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       420 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      .+|..+..+++|++|++++|++++..+..+..+++|+.+++.+|||.|+|+
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            678888999999999999999998777778889999999999999999986

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=3.9e-20  Score=165.98  Aligned_cols=179  Identities=26%  Similarity=0.226  Sum_probs=102.5

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      +.++.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            45666666665 555432   456777777777766655555666677777777776666 4554444445666666666


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc
Q 038407           98 MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI  177 (528)
Q Consensus        98 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  177 (528)
                      +|++++..+..|.++++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.  
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--  161 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--  161 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence            66666555555666666666666666665 444444445556666666666555433333445555555555555332  


Q ss_pred             CcccCCCCCCCEEEccCCccCccCCccccCC
Q 038407          178 LESLSKCSSLEGLYLSDNNLSGKIPRWLGNL  208 (528)
Q Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  208 (528)
                          ..+++|+.|+++.|.+++.+|..++.+
T Consensus       162 ----~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          162 ----CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ----CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ----cCCCCHHHHHHHHHhCCceeeccCccc
Confidence                233445555555555555555444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.7e-20  Score=188.56  Aligned_cols=182  Identities=28%  Similarity=0.347  Sum_probs=113.2

Q ss_pred             CCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEc
Q 038407           41 KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL  120 (528)
Q Consensus        41 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  120 (528)
                      +|+.|++++|.+++ +|..+  .++|++|++++|.++ .+|    ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            66666666666665 44333  256667777766666 555    225667777777776665 444 443  6777777


Q ss_pred             cCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCcc
Q 038407          121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGK  200 (528)
Q Consensus       121 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~  200 (528)
                      ++|.++ .+|.    .+++|++|++++|.+++ ++.   .+++|++|++++|.++.++. +.  ++|+.|++++|.++ .
T Consensus       128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-c
Confidence            777666 4555    35667777777777665 333   45667777777777766655 44  66777777777766 4


Q ss_pred             CCccccCCCCC-------CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccc
Q 038407          201 IPRWLGNLSML-------QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH  251 (528)
Q Consensus       201 ~~~~l~~l~~L-------~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  251 (528)
                      +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++..+.
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            444 433  55       77777777777 4566566677777777777777665444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=4.6e-19  Score=181.28  Aligned_cols=188  Identities=26%  Similarity=0.300  Sum_probs=148.9

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      +|++|++++|++++ +|..+   .++|++|+|++|.++ .+|   ..+++|++|++++|+++ .+|. +.   .+|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEE
Confidence            89999999998874 77754   378999999999888 344   45788999999999988 4776 33   3899999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR  175 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  175 (528)
                      +++|.+++ +|.   .+++|+.|++++|.++ .+|.    .+++|++|++++|.+++ ++. +.  ++|+.|++++|.++
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            99999886 454   5788999999999988 5776    46789999999999886 444 54  88999999999998


Q ss_pred             ccCcccCCCCCC-------CEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCC
Q 038407          176 EILESLSKCSSL-------EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD  233 (528)
Q Consensus       176 ~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~  233 (528)
                      .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            8877 544  67       89999999888 5777777789999999999999888777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2e-19  Score=169.86  Aligned_cols=186  Identities=23%  Similarity=0.284  Sum_probs=132.1

Q ss_pred             EEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC
Q 038407           20 VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN   99 (528)
Q Consensus        20 L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n   99 (528)
                      +.+..+.+.+..+   +..+++|++|++++|.++..  ..+..+++|++|++++|+++ .++. +. .+++|++|++++|
T Consensus        29 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n  100 (291)
T 1h6t_A           29 DNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDEN  100 (291)
T ss_dssp             HHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSS
T ss_pred             HHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCC
Confidence            3455555543333   34667777777777777654  24667777888888877777 4443 33 3677888888888


Q ss_pred             cCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc
Q 038407          100 AFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE  179 (528)
Q Consensus       100 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  179 (528)
                      .+++.  ..+..+++|++|++++|+++ .++.  +..+++|++|++++|.+++.  +.+..+++|++|++++|.+..+++
T Consensus       101 ~l~~~--~~l~~l~~L~~L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          101 KVKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CCCCG--GGGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cCCCC--hhhccCCCCCEEECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            77643  34777788888888888877 4432  34677888888888888763  567778888888888888887765


Q ss_pred             ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407          180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG  223 (528)
Q Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  223 (528)
                       +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence             77888888888888888743 3 47788888888888888874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.8e-19  Score=159.51  Aligned_cols=129  Identities=28%  Similarity=0.351  Sum_probs=52.3

Q ss_pred             CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407           65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL  144 (528)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  144 (528)
                      +|++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|+++ .++...+..+++|++|+
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence            4444444444444 233332222444444444444444333333444444444444444444 33333333344444444


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCC
Q 038407          145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDN  195 (528)
Q Consensus       145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n  195 (528)
                      +++|.+++..+..+..+++|++|++++|.+..+++ .+..+++|++|++++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            44444443222233334444444444444443333 2333444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=6.9e-19  Score=158.96  Aligned_cols=120  Identities=23%  Similarity=0.247  Sum_probs=99.3

Q ss_pred             ccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccccc
Q 038407          275 IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR  354 (528)
Q Consensus       275 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (528)
                      ..|..+++|+.|++++|.+++..+..+..                                                   
T Consensus        51 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------------------------------------------------   79 (220)
T 2v70_A           51 GIFKKLPQLRKINFSNNKITDIEEGAFEG---------------------------------------------------   79 (220)
T ss_dssp             CCGGGCTTCCEEECCSSCCCEECTTTTTT---------------------------------------------------
T ss_pred             hhhccCCCCCEEECCCCcCCEECHHHhCC---------------------------------------------------
Confidence            34667778888888888877655544443                                                   


Q ss_pred             ccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEE
Q 038407          355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF  434 (528)
Q Consensus       355 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  434 (528)
                       +++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|
T Consensus        80 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           80 -ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             -CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             -CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence             3478888888888887777788999999999999999998888999999999999999999998888899999999999


Q ss_pred             EccCCCCccCCC
Q 038407          435 NVAHNNLSGKIP  446 (528)
Q Consensus       435 ~ls~N~l~~~~p  446 (528)
                      ++++|++.+..+
T Consensus       159 ~L~~N~l~c~c~  170 (220)
T 2v70_A          159 NLLANPFNCNCY  170 (220)
T ss_dssp             ECCSCCEECSGG
T ss_pred             EecCcCCcCCCc
Confidence            999999886544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=8e-19  Score=181.56  Aligned_cols=191  Identities=23%  Similarity=0.285  Sum_probs=144.2

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      .+..++++.+.+.+..+   +..+++|+.|++++|.+...  ..+..+++|+.|+|++|.+. .++. +.. +++|+.|+
T Consensus        22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEE
T ss_pred             HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEE
Confidence            34455666666664433   45778888888888887654  25778888888888888887 4444 433 78888888


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR  175 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  175 (528)
                      |++|.+.+.  ..+..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+++.  +.+..+++|+.|+|++|.+.
T Consensus        94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           94 LDENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CCSSCCCCC--TTSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CcCCCCCCC--hhhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            888888753  36788888888888888887 5543  34688888888888888863  66778888888888888888


Q ss_pred             ccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeecc
Q 038407          176 EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP  224 (528)
Q Consensus       176 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  224 (528)
                      .+++ +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.
T Consensus       167 ~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          167 DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             Cchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            7766 78888888888888888753  3577888888888888888754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.3e-18  Score=164.44  Aligned_cols=188  Identities=23%  Similarity=0.332  Sum_probs=138.8

Q ss_pred             EEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCC
Q 038407           44 SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN  123 (528)
Q Consensus        44 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  123 (528)
                      .+.+..+.+++.  ..+..+++|++|++++|.+. .++. +.. +++|++|++++|++++..+  +.++++|++|++++|
T Consensus        28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            334555555443  23446778888888888887 5543 333 7788888888888876544  778888888888888


Q ss_pred             cccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCc
Q 038407          124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPR  203 (528)
Q Consensus       124 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  203 (528)
                      .++ .++.  +..+++|++|++++|++++  .+.+..+++|++|++++|.+..+ +.+..+++|++|++++|.+.+..+ 
T Consensus       101 ~l~-~~~~--l~~l~~L~~L~L~~n~i~~--~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          101 KVK-DLSS--LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             CCC-CGGG--GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCC-CChh--hccCCCCCEEECCCCcCCC--ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-
Confidence            887 5554  3468888888888888876  35677788888888888888876 567778888888888888875443 


Q ss_pred             cccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407          204 WLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       204 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                       +..+++|++|++++|.+++. + .+..+++|+.|++++|++...
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence             77888888888888888753 3 477888888888888887654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.79  E-value=6.1e-19  Score=155.65  Aligned_cols=115  Identities=23%  Similarity=0.371  Sum_probs=107.8

Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      +++++|++++|.++ .+|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+++++.|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            46999999999998 77899999999999999999999988899999999999999999999988889999999999999


Q ss_pred             cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ++|++++..+..+..+++|+.+++++|||.|+|++.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            999999877777888999999999999999999754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=7.2e-19  Score=155.24  Aligned_cols=115  Identities=28%  Similarity=0.389  Sum_probs=108.1

Q ss_pred             cccEEECCCCcCccCCCh-hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          358 YLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      ++++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            699999999999976664 5899999999999999999998999999999999999999999999888999999999999


Q ss_pred             cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ++|++++..|..+..+++|+.+++++|||.|+|++.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence            999999999999999999999999999999999754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.1e-18  Score=155.70  Aligned_cols=153  Identities=23%  Similarity=0.267  Sum_probs=123.1

Q ss_pred             CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCC
Q 038407          212 QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN  291 (528)
Q Consensus       212 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n  291 (528)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+.+                        ..+..|..+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~------------------------i~~~~~~~l~~L~~L~Ls~N   66 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKV------------------------IPPGAFSPYKKLRRIDLSNN   66 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCE------------------------ECTTSSTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCC------------------------cCHhHhhCCCCCCEEECCCC
Confidence            45666666666 3344332  456666666665543                        44556888999999999999


Q ss_pred             cCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCcc
Q 038407          292 ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG  371 (528)
Q Consensus       292 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  371 (528)
                      .+++..|..+..                                                    +++|++|+|++|.++.
T Consensus        67 ~i~~~~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           67 QISELAPDAFQG----------------------------------------------------LRSLNSLVLYGNKITE   94 (220)
T ss_dssp             CCCEECTTTTTT----------------------------------------------------CSSCCEEECCSSCCCC
T ss_pred             cCCCcCHHHhhC----------------------------------------------------CcCCCEEECCCCcCCc
Confidence            998766766654                                                    3479999999999997


Q ss_pred             CCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407          372 QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG  443 (528)
Q Consensus       372 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  443 (528)
                      ..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++..
T Consensus        95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            666778999999999999999998889999999999999999999998888889999999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=7.8e-19  Score=171.45  Aligned_cols=176  Identities=23%  Similarity=0.227  Sum_probs=99.1

Q ss_pred             CEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCcccc-CCCCCCEEEccCCcccccCChhhhhCCCCCCEEEc
Q 038407           67 MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG-NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLL  145 (528)
Q Consensus        67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  145 (528)
                      +.++++++.++ .+|..+.   +.++.|++++|.+++..+..|. ++++|++|++++|+++ .++...+.++++|++|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            35555555555 4554332   2455666666666555555555 5566666666666665 444444445566666666


Q ss_pred             cCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccc---cCCCCCCeeecCCcee
Q 038407          146 SNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWL---GNLSMLQHIILPENHF  221 (528)
Q Consensus       146 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~i  221 (528)
                      ++|+++...+..|.++++|++|++++|.+..+++ .|..+++|+.|++++|.++...+..|   ..+++|+.|++++|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            6666655444455566666666666666665533 55566666666666666654333333   3466666666666666


Q ss_pred             eccCcccccCCCC--CCEEEcccCcccc
Q 038407          222 EGPIPMEFCQLDS--LQILNISDNNISG  247 (528)
Q Consensus       222 ~~~~~~~l~~l~~--L~~L~L~~n~l~~  247 (528)
                      +...+..+..++.  ++.|++++|++..
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccC
Confidence            6544455555554  3667777776653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.8e-18  Score=178.97  Aligned_cols=175  Identities=21%  Similarity=0.278  Sum_probs=151.9

Q ss_pred             hhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCC
Q 038407           11 FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPS   90 (528)
Q Consensus        11 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~   90 (528)
                      +..+++|++|++++|.+. .++.  +..+++|++|+|++|.+.+..+  +..+++|++|+|++|.+. .++ .+.. +++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKD-LKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTT-CTT
T ss_pred             hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhcc-CCC
Confidence            467899999999999997 5664  6899999999999999987665  889999999999999998 555 4444 899


Q ss_pred             CceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407           91 LKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD  170 (528)
Q Consensus        91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  170 (528)
                      |++|+|++|.+.+.  ..+..+++|+.|++++|.++ .++  .+..+++|+.|++++|.+++..+  +..+++|+.|+|+
T Consensus       111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCCC--ccccCCCccCEEECCCCccC-Cch--hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence            99999999999864  56899999999999999998 553  34589999999999999997544  8899999999999


Q ss_pred             CCcCCccCcccCCCCCCCEEEccCCccCccC
Q 038407          171 GNHFREILESLSKCSSLEGLYLSDNNLSGKI  201 (528)
Q Consensus       171 ~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  201 (528)
                      +|.+..+ +.+..+++|+.|++++|++.+..
T Consensus       184 ~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          184 KNHISDL-RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             SSCCCBC-GGGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCCCCC-hHHccCCCCCEEEccCCcCcCCc
Confidence            9999987 46889999999999999987543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=4.1e-18  Score=154.97  Aligned_cols=153  Identities=23%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407           65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL  144 (528)
Q Consensus        65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  144 (528)
                      .-+.++.+++.++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|++. .++...+.++++|++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            3556888887777 677654   357888888888888777777888888888888888876 66666656677777777


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee
Q 038407          145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE  222 (528)
Q Consensus       145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  222 (528)
                      +++|+++...+..+..+++|++|++++|.+..++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            777777654444455566666666666666555555555555555555555554333334444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=6.9e-21  Score=195.84  Aligned_cols=203  Identities=18%  Similarity=0.190  Sum_probs=150.1

Q ss_pred             CCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCce-------------eeccCcccccCCCCCCEEE-cccCcccc
Q 038407          182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH-------------FEGPIPMEFCQLDSLQILN-ISDNNISG  247 (528)
Q Consensus       182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------i~~~~~~~l~~l~~L~~L~-L~~n~l~~  247 (528)
                      ..+++|+.|++++|.+. .+|..++.+++|++|++++|.             ..+..|..+..+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45677777777777776 567777777777777776654             3445566667777777777 56554432


Q ss_pred             cccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccc
Q 038407          248 IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEG  327 (528)
Q Consensus       248 ~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (528)
                      +           ..+.+.+|.+....+      ..|+.|++++|.+++ +|. +..                        
T Consensus       425 L-----------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~------------------------  461 (567)
T 1dce_A          425 L-----------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ------------------------  461 (567)
T ss_dssp             H-----------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG------------------------
T ss_pred             h-----------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc------------------------
Confidence            2           334455566554322      248899999999875 453 433                        


Q ss_pred             cccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCC
Q 038407          328 FAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI  407 (528)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  407 (528)
                                                  +++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .++++++|
T Consensus       462 ----------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L  510 (567)
T 1dce_A          462 ----------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL  510 (567)
T ss_dssp             ----------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred             ----------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCC
Confidence                                        457999999999998 788899999999999999999996 56 79999999


Q ss_pred             CeeeCcCCcCcccC-ccccccCCCCCEEEccCCCCccCCCCCC---cccCCCCcCc
Q 038407          408 KSLDLSYNKLDGKI-PLQLVELNTLAVFNVAHNNLSGKIPEWT---AQFATFNESS  459 (528)
Q Consensus       408 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~~~l~~l~  459 (528)
                      +.|+|++|++++.. |..+..+++|+.|++++|++++..|...   ..+++|+.++
T Consensus       511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            99999999999876 8899999999999999999997766432   1256666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.3e-18  Score=161.66  Aligned_cols=165  Identities=23%  Similarity=0.261  Sum_probs=66.4

Q ss_pred             CCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEcc
Q 038407           42 LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS  121 (528)
Q Consensus        42 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  121 (528)
                      +..++++++.+++..  .+..+++|++|++++|.++ .++ .+.. +++|++|++++|++++..+  +.++++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            333444444443322  2334444444444444444 333 2222 4444444444444443322  4444444444444


Q ss_pred             CCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccC
Q 038407          122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI  201 (528)
Q Consensus       122 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  201 (528)
                      +|+++ .++...  . ++|++|++++|++++  .+.+..+++|++|++++|++++++ .+..+++|++|++++|.+.+. 
T Consensus        94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCS-CCTTCC--C-SSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccC-CcCccc--c-CcccEEEccCCccCC--ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence            44444 233211  1 344444444444443  122334444444444444444332 233344444444444444322 


Q ss_pred             CccccCCCCCCeeecCCceee
Q 038407          202 PRWLGNLSMLQHIILPENHFE  222 (528)
Q Consensus       202 ~~~l~~l~~L~~L~L~~n~i~  222 (528)
                       ..+..+++|+.|++++|.++
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEE
T ss_pred             -HHhccCCCCCEEeCCCCccc
Confidence             23333444444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=7.2e-18  Score=149.63  Aligned_cols=153  Identities=18%  Similarity=0.312  Sum_probs=108.0

Q ss_pred             cCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCE
Q 038407          206 GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQL  285 (528)
Q Consensus       206 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~  285 (528)
                      ..+++|++|++++|.++ .++ .+..+++|++|++++|.+...                          ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--------------------------~~l~~l~~L~~   92 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--------------------------NPISGLSNLER   92 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--------------------------GGGTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--------------------------hhhhcCCCCCE
Confidence            44556666777666666 333 466667777777776644322                          24667778888


Q ss_pred             EEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECC
Q 038407          286 IDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLS  365 (528)
Q Consensus       286 L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  365 (528)
                      |++++|.+++..+..+..                                                    +++|++|+++
T Consensus        93 L~l~~n~l~~~~~~~l~~----------------------------------------------------l~~L~~L~Ls  120 (197)
T 4ezg_A           93 LRIMGKDVTSDKIPNLSG----------------------------------------------------LTSLTLLDIS  120 (197)
T ss_dssp             EEEECTTCBGGGSCCCTT----------------------------------------------------CTTCCEEECC
T ss_pred             EEeECCccCcccChhhcC----------------------------------------------------CCCCCEEEec
Confidence            888888777655554433                                                    3478888888


Q ss_pred             CCcCccCCChhhhccccCCEEeCCCcc-ccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407          366 YNKLIGQIPPQIGNLTRIQTLNLSYNN-LTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS  442 (528)
Q Consensus       366 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  442 (528)
                      +|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            888887677788888888888888887 65 444 58888888888888888885 33 6788888888888888875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=3.7e-18  Score=164.48  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             CCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCC-eeecCCceeeccCcccccCCCCCCEE
Q 038407          161 LTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQ-HIILPENHFEGPIPMEFCQLDSLQIL  238 (528)
Q Consensus       161 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~l~~l~~L~~L  238 (528)
                      +++|+.+++++|.++.++. +|.++++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            5677777777777777766 6777777777777776 5555666777777777 777776 5555666677777777777


Q ss_pred             EcccCcccccccchhhhccccceee
Q 038407          239 NISDNNISGIYHHASILSLSKDQLV  263 (528)
Q Consensus       239 ~L~~n~l~~~~~~~~~~~~~~~~L~  263 (528)
                      ++++|.+..+...+|.....++.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7777777776666555544444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1e-17  Score=148.68  Aligned_cols=153  Identities=16%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407           37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI  116 (528)
Q Consensus        37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  116 (528)
                      ..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++ .+.. +++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN-PISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG-GGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch-hhhc-CCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            456677777777777663 33 5666777777777777655 332 3333 67777777777777766667777777777


Q ss_pred             EEEccCCcccccCChhhhhCCCCCCEEEccCCc-CcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCC
Q 038407          117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNS-LEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDN  195 (528)
Q Consensus       117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n  195 (528)
                      +|++++|.+++..+..+ ..+++|++|++++|. ++. + +.+..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~-~-~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITD-I-MPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCC-C-GGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccc-c-HhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence            77777777774444443 467777788887776 554 2 35677777888888888777765 6677788888888888


Q ss_pred             ccC
Q 038407          196 NLS  198 (528)
Q Consensus       196 ~l~  198 (528)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=8.7e-21  Score=195.10  Aligned_cols=105  Identities=24%  Similarity=0.196  Sum_probs=55.5

Q ss_pred             CCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccC
Q 038407          115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSD  194 (528)
Q Consensus       115 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~  194 (528)
                      |+.|++++|.++ .+|.  +..+++|++|++++|.++ .+|..+..+++|++|++++|.++++| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            555555555555 3443  234555555555555555 34445555555555555555555544 455555555555555


Q ss_pred             CccCccC-CccccCCCCCCeeecCCceeecc
Q 038407          195 NNLSGKI-PRWLGNLSMLQHIILPENHFEGP  224 (528)
Q Consensus       195 n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~  224 (528)
                      |.+++.. |..+..+++|+.|++++|.+++.
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            5555443 55555555555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=5.6e-17  Score=143.06  Aligned_cols=114  Identities=26%  Similarity=0.363  Sum_probs=91.0

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45799999999999988888999999999999999999988888899999999999999999988899999999999999


Q ss_pred             ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      +++|++.+..+... -...++...+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence            99999987654211 01112233445555566544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=9.6e-18  Score=155.80  Aligned_cols=171  Identities=22%  Similarity=0.249  Sum_probs=138.0

Q ss_pred             CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407           62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE  141 (528)
Q Consensus        62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  141 (528)
                      .+.+++.++++++.++ .++ .+.. +++|++|++++|.++.. + .+..+++|++|++++|+++ .++.  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence            4566777888888887 554 3444 78999999999998744 4 6888999999999999998 6665  45789999


Q ss_pred             EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee
Q 038407          142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF  221 (528)
Q Consensus       142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  221 (528)
                      +|++++|++++. + .+.. ++|++|++++|++..++ .+..+++|+.|++++|++++. + .+..+++|++|++++|.+
T Consensus        89 ~L~L~~N~l~~l-~-~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           89 ELSVNRNRLKNL-N-GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EEECCSSCCSCC-T-TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             EEECCCCccCCc-C-cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            999999998863 2 2333 88999999999998864 588889999999999998854 3 688889999999999999


Q ss_pred             eccCcccccCCCCCCEEEcccCccccc
Q 038407          222 EGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      ++.  ..+..+++|+.|++++|++...
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            866  6688889999999999988765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.4e-17  Score=160.43  Aligned_cols=287  Identities=12%  Similarity=0.100  Sum_probs=163.8

Q ss_pred             CCCCceeeccCCcCcccCCccccC-CCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCC-----
Q 038407           88 LPSLKYFNISMNAFDSSIPTSFGN-MNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFN-----  160 (528)
Q Consensus        88 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  160 (528)
                      +++++.|.++++ +.......+.. +++|+.|||++|++.. ..+...   .+.++.+.+..+.+.   ...|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhccccccc
Confidence            347888888764 22111123333 6778888888887761 111111   122344555555433   344555     


Q ss_pred             ---CCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee----eccCcccccCC
Q 038407          161 ---LTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF----EGPIPMEFCQL  232 (528)
Q Consensus       161 ---l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i----~~~~~~~l~~l  232 (528)
                         +++|+.+++.+ .++.+++ +|.+|++|+.+++++|.+....+.+|..+.++..+....+..    ......+|.++
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               77777777777 6776665 677777777777777777666666777766666666554322    11223344455


Q ss_pred             CCCC-EEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccc
Q 038407          233 DSLQ-ILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI  311 (528)
Q Consensus       233 ~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~  311 (528)
                      ..|+ .+.+....-  +..                     .....-....+++.+.+.++-....    +          
T Consensus       176 ~~L~~~i~~~~~~~--l~~---------------------~~~~~~~~~~~~~~l~~~~~l~~~~----~----------  218 (329)
T 3sb4_A          176 EPLETTIQVGAMGK--LED---------------------EIMKAGLQPRDINFLTIEGKLDNAD----F----------  218 (329)
T ss_dssp             CCCEEEEEECTTCC--HHH---------------------HHHHTTCCGGGCSEEEEEECCCHHH----H----------
T ss_pred             cccceeEEecCCCc--HHH---------------------HHhhcccCccccceEEEeeeecHHH----H----------
Confidence            5555 333332110  000                     0000111234455555554311100    0          


Q ss_pred             cCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCc
Q 038407          312 DTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN  391 (528)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  391 (528)
                                                            ......+++|+++++++|.++.+.+.+|.++++|+.++|.+|
T Consensus       219 --------------------------------------~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          219 --------------------------------------KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             --------------------------------------HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             --------------------------------------HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                                                  000001346777777777777666667777777777777776


Q ss_pred             cccccCCccccCCCCCC-eeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCc
Q 038407          392 NLTGSIPSTFSNLKHIK-SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS  459 (528)
Q Consensus       392 ~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~  459 (528)
                       ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+..+..+++|+.+.
T Consensus       261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             -cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             6666667777777777 777777 66666667777777777777777777766666676666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=5.6e-17  Score=141.23  Aligned_cols=114  Identities=24%  Similarity=0.277  Sum_probs=105.0

Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      ++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            47999999999999777778899999999999999999888888999999999999999999887778899999999999


Q ss_pred             cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      ++|++++..+..+..+++|+.+++++||+.|+|+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999997777777789999999999999999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=1.1e-15  Score=150.19  Aligned_cols=265  Identities=12%  Similarity=0.100  Sum_probs=160.0

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407           14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY   93 (528)
Q Consensus        14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (528)
                      +..++.+.+.++ ++ .++...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .++...+..+++|+.
T Consensus       112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            355666665543 32 4555555554 5666666554 554555556553 566666664 444 555555555666777


Q ss_pred             eeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc
Q 038407           94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH  173 (528)
Q Consensus        94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (528)
                      ++++.|.++.+....|. ..+|+.+.+..+ +. .++...|.++++|+.+++..+ ++......|.+ .+|+.+.+. +.
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            77766666655555555 366666666533 55 566666666666777766653 33333444444 566666663 33


Q ss_pred             CCccCc-ccCCCCCCCEEEccCCccC-----ccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccc
Q 038407          174 FREILE-SLSKCSSLEGLYLSDNNLS-----GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG  247 (528)
Q Consensus       174 ~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (528)
                      +..+.. +|.+|++|+.+++.++.+.     ...+.+|.++++|+.+++.+ .++.+...+|.++++|+.+.+..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            555544 6666777777776665443     34455666777777777763 355555666777777777777443 555


Q ss_pred             cccchhhhccccceeeeccCcccccCcccccCCC-CCCEEEccCCcCC
Q 038407          248 IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN-KLQLIDLSNNILS  294 (528)
Q Consensus       248 ~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~  294 (528)
                      +...+|... .++.+.+.+|.........|.+++ .++.|.+..+.+.
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            555555554 557777777766666666777774 7888888876543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=2.2e-15  Score=148.08  Aligned_cols=253  Identities=13%  Similarity=0.060  Sum_probs=192.6

Q ss_pred             hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCC
Q 038407           36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL  115 (528)
Q Consensus        36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  115 (528)
                      +..+..++.+.+.+ .++.....+|.++ +|+.+.+..+ ++ .++...+..+ +|+.+.+.. .++.+...+|.++++|
T Consensus       109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence            44567888888864 4566666778775 7999998766 66 6777777654 799999876 6777777889999999


Q ss_pred             CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccC
Q 038407          116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSD  194 (528)
Q Consensus       116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~  194 (528)
                      +.+++.+|.++ .++...|. +.+|+.+.+..+ ++......|.++++|+.+.+..+ +..+.. +|.+ .+|+.+.+. 
T Consensus       183 ~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-  256 (401)
T 4fdw_A          183 KKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-  256 (401)
T ss_dssp             CEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred             CeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence            99999988888 88888875 688999999854 66666777888999999999875 566655 6666 789999985 


Q ss_pred             CccCccCCccccCCCCCCeeecCCceee-----ccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcc
Q 038407          195 NNLSGKIPRWLGNLSMLQHIILPENHFE-----GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNF  269 (528)
Q Consensus       195 n~l~~~~~~~l~~l~~L~~L~L~~n~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l  269 (528)
                      +.+......+|.++++|+.+++.++.+.     .+...+|.+|++|+.+++. +.+..+...+|.....++.+.+.++ +
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence            4466566778889999999998887664     4566788899999999998 4577777777766667788888554 6


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCcCCCCCCcC
Q 038407          270 EGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN  303 (528)
Q Consensus       270 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~  303 (528)
                      +.....+|.++ +|+.+++++|......+..+..
T Consensus       335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             cEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence            66667788888 8999999988766443444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=1.6e-15  Score=149.76  Aligned_cols=315  Identities=14%  Similarity=0.130  Sum_probs=203.8

Q ss_pred             cCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccc
Q 038407           30 EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSF  109 (528)
Q Consensus        30 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  109 (528)
                      .+....|.+|.+|+.+.|.. .++.....+|.+|.+|+.+++.++ ++ .++...+..+++|+.+.+..+ +..+...+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence            56666688888888888864 466666778888888888888654 55 666777777788888777644 444556667


Q ss_pred             cCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCC
Q 038407          110 GNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLE  188 (528)
Q Consensus       110 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~  188 (528)
                      .+...+......  ... .+....|.++.+|+.+.+..+. .......|.++.+|+.+.+..+ +..+.. +|..+..|+
T Consensus       137 ~~~~~~~~~~~~--~~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          137 KGCDFKEITIPE--GVT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTCCCSEEECCT--TCC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             ecccccccccCc--ccc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            766543333222  223 4555667788888888887653 3344566778888888888776 555544 788888888


Q ss_pred             EEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCc
Q 038407          189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNN  268 (528)
Q Consensus       189 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~  268 (528)
                      .+.+..+...  +.........|+.+.+.... +.+...+|..+..|+.+.+..+... +                    
T Consensus       212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i--------------------  267 (394)
T 4fs7_A          212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-I--------------------  267 (394)
T ss_dssp             BCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-E--------------------
T ss_pred             eeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-e--------------------
Confidence            8887765432  23334455678888876543 3355567888888888888765322 1                    


Q ss_pred             ccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccc
Q 038407          269 FEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA  348 (528)
Q Consensus       269 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (528)
                          ....|..+..++.+....+.+..   ..+.                                              
T Consensus       268 ----~~~~F~~~~~l~~~~~~~~~i~~---~~F~----------------------------------------------  294 (394)
T 4fs7_A          268 ----GGSLFYNCSGLKKVIYGSVIVPE---KTFY----------------------------------------------  294 (394)
T ss_dssp             ----CSCTTTTCTTCCEEEECSSEECT---TTTT----------------------------------------------
T ss_pred             ----eccccccccccceeccCceeecc---cccc----------------------------------------------
Confidence                12345556666666554432210   0111                                              


Q ss_pred             ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC
Q 038407          349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL  428 (528)
Q Consensus       349 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  428 (528)
                            .+.+|+.+.+.++ ++.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++
T Consensus       295 ------~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          295 ------GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             ------TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred             ------ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence                  1335666666543 44455567777777777777644 55566677777788888877766 665666777777


Q ss_pred             CCCCEEEccCC
Q 038407          429 NTLAVFNVAHN  439 (528)
Q Consensus       429 ~~L~~L~ls~N  439 (528)
                      ++|+.+++..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            78888777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=2e-17  Score=175.46  Aligned_cols=116  Identities=24%  Similarity=0.354  Sum_probs=55.9

Q ss_pred             ccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCC
Q 038407          156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL  235 (528)
Q Consensus       156 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  235 (528)
                      ..+..++.|+.|+|++|.+..++..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            3344445555555555555544444444455555555555554 44444455555555555555554 334444445555


Q ss_pred             CEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407          236 QILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP  298 (528)
Q Consensus       236 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  298 (528)
                      ++|+|++|.++                         .+|..|..+++|+.|++++|.+++.+|
T Consensus       296 ~~L~L~~N~l~-------------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          296 KYFYFFDNMVT-------------------------TLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             SEEECCSSCCC-------------------------CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CEEECCCCCCC-------------------------ccChhhhcCCCccEEeCCCCccCCCCh
Confidence            55554444443                         223345555566666666665554433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.66  E-value=9.4e-15  Score=144.32  Aligned_cols=317  Identities=13%  Similarity=0.054  Sum_probs=198.6

Q ss_pred             CccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCCh
Q 038407           52 LPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE  131 (528)
Q Consensus        52 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  131 (528)
                      ++.....+|.++.+|+.+.+.. .++ .++...+..+++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            4455566788888888888864 365 677777776788888888654 55566677888888887776544 44 5555


Q ss_pred             hhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCC
Q 038407          132 HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSM  210 (528)
Q Consensus       132 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  210 (528)
                      ..|.++..++........  ......|.++++|+.+.+..+. ..+.. .|..+.+|+.+++..+ +......+|..+..
T Consensus       134 ~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            555555433333322222  2234567778888888887553 33433 6777888888888765 44455667777888


Q ss_pred             CCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccC
Q 038407          211 LQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN  290 (528)
Q Consensus       211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~  290 (528)
                      |+.+.+..+... . ...+....+|+.+.+.... ..                        ....++..+..|+.+.+..
T Consensus       210 L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~~------------------------i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          210 LENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-TE------------------------LGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             CCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-CE------------------------ECSSTTTTCSSCCEEEECC
T ss_pred             cceeecCCCceE-e-ehhhcccCCCceEEECCCc-ee------------------------cccccccccccceeEEcCC
Confidence            888877765443 2 2233345667776654321 11                        1223566777777777766


Q ss_pred             CcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCc
Q 038407          291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI  370 (528)
Q Consensus       291 n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  370 (528)
                      +... .....+..                                                    ...++.+......+ 
T Consensus       263 ~~~~-i~~~~F~~----------------------------------------------------~~~l~~~~~~~~~i-  288 (394)
T 4fs7_A          263 NKLR-IGGSLFYN----------------------------------------------------CSGLKKVIYGSVIV-  288 (394)
T ss_dssp             TTCE-ECSCTTTT----------------------------------------------------CTTCCEEEECSSEE-
T ss_pred             Ccce-eecccccc----------------------------------------------------ccccceeccCceee-
Confidence            5332 11111111                                                    23455555554432 


Q ss_pred             cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCc
Q 038407          371 GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTA  450 (528)
Q Consensus       371 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  450 (528)
                        ....|..+.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.+...+|.++++|+.+++..+ ++.....++.
T Consensus       289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             --ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence              2346777788888888655 55566677888888888888654 66666777888888888888766 6656666777


Q ss_pred             ccCCCCcCcccCC
Q 038407          451 QFATFNESSYEGN  463 (528)
Q Consensus       451 ~~~~l~~l~l~~N  463 (528)
                      .+.+|+.+.+..+
T Consensus       364 ~C~~L~~i~lp~~  376 (394)
T 4fs7_A          364 GCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECCC
Confidence            7777777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=3.7e-16  Score=134.76  Aligned_cols=110  Identities=24%  Similarity=0.262  Sum_probs=100.8

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      ..+++++++|.++ .+|..+  .++|+.|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4689999999998 567655  3899999999999999889999999999999999999998888888999999999999


Q ss_pred             CCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      +|++++..+..+..+++|+.+++++|||.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998888788899999999999999999986

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.3e-17  Score=174.95  Aligned_cols=119  Identities=31%  Similarity=0.343  Sum_probs=54.7

Q ss_pred             CccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCC
Q 038407          106 PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS  185 (528)
Q Consensus       106 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~  185 (528)
                      +..|..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.+..+|..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence            444444555555555555544 4444443 3445555555555544 334444444455555555555444444444444


Q ss_pred             CCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCccc
Q 038407          186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME  228 (528)
Q Consensus       186 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~  228 (528)
                      +|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..
T Consensus       294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            4555555544444 33444444444445555444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=1.1e-15  Score=131.75  Aligned_cols=135  Identities=21%  Similarity=0.221  Sum_probs=92.6

Q ss_pred             CCCCCCEEEccCCcCc-ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           13 HQHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        13 ~~~~L~~L~Ls~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      ..++|++|++++|.++ +.+|.. +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.. +++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCC
Confidence            3467888888888776 566655 46777888888888777765  66777777888888887777445544444 6777


Q ss_pred             ceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEccCCcCcc
Q 038407           92 KYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLSNNSLEG  152 (528)
Q Consensus        92 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~  152 (528)
                      ++|++++|.+++... ..+..+++|++|++++|.++ .+|.   ..+..+++|++|++++|.+..
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence            777777777765322 56777777777777777776 5554   344566777777777766653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=9.5e-16  Score=132.20  Aligned_cols=131  Identities=20%  Similarity=0.173  Sum_probs=66.6

Q ss_pred             CCCCEEEccCCcCc-cccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407           64 KSLMLLDVSNNNLQ-GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        64 ~~L~~L~ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  142 (528)
                      ++|++|++++|.++ +.+|..+.. +++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|.. +..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCE
Confidence            34444444444443 333333222 44555555555554433  44455555555555555555323332 223555555


Q ss_pred             EEccCCcCcccC-CccCCCCCCCCEEEccCCcCCccCc----ccCCCCCCCEEEccCCccC
Q 038407          143 LLLSNNSLEGHL-FPRNFNLTNLRRLQLDGNHFREILE----SLSKCSSLEGLYLSDNNLS  198 (528)
Q Consensus       143 L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~l~~L~~L~L~~n~l~  198 (528)
                      |++++|.+++.. +..+..+++|++|++++|.+..+++    .+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555555555421 1445555666666666666655554    4556666666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=132.60  Aligned_cols=89  Identities=29%  Similarity=0.350  Sum_probs=81.5

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|+++...+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            45799999999999988888899999999999999999988888999999999999999999977777899999999999


Q ss_pred             ccCCCCccC
Q 038407          436 VAHNNLSGK  444 (528)
Q Consensus       436 ls~N~l~~~  444 (528)
                      +++|++...
T Consensus       133 L~~N~~~C~  141 (193)
T 2wfh_A          133 IGANPLYCD  141 (193)
T ss_dssp             CCSSCEECS
T ss_pred             eCCCCeecC
Confidence            999999753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=7e-16  Score=130.11  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=103.4

Q ss_pred             CCCCCCEEEccCCcCc-ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           13 HQHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        13 ~~~~L~~L~Ls~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      ..++|++|++++|.++ +.+|.. +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.. +++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCC
Confidence            3478999999999987 677764 57899999999999998876  67888999999999999998556655544 7899


Q ss_pred             ceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEcc
Q 038407           92 KYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLS  146 (528)
Q Consensus        92 ~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~  146 (528)
                      ++|++++|.+++. .+..+..+++|++|++++|.++ .++.   ..+..+++|++|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            9999999998864 3477888899999999999888 5554   455678888888875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=1.4e-15  Score=131.60  Aligned_cols=109  Identities=21%  Similarity=0.257  Sum_probs=98.9

Q ss_pred             ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccC
Q 038407          359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAH  438 (528)
Q Consensus       359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  438 (528)
                      -+.+++++|.+. .+|..+.  ++|+.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999997 6676554  8999999999999998899999999999999999999987777789999999999999


Q ss_pred             CCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407          439 NNLSGKIPEWTAQFATFNESSYEGNPFLCGLP  470 (528)
Q Consensus       439 N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~  470 (528)
                      |++++..+..+..+++|+.+++++|||.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99998777778889999999999999999986

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.6e-15  Score=127.94  Aligned_cols=83  Identities=23%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccccc-CCccccCCCCCCeeeCcCCcCcccCc---cccccCCCC
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS-IPSTFSNLKHIKSLDLSYNKLDGKIP---LQLVELNTL  431 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L  431 (528)
                      +++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            34677788888877766677777777788888888877753 23667777778888888887776554   467777777


Q ss_pred             CEEEccC
Q 038407          432 AVFNVAH  438 (528)
Q Consensus       432 ~~L~ls~  438 (528)
                      +.|++++
T Consensus       143 ~~L~l~d  149 (149)
T 2je0_A          143 TYLDGYD  149 (149)
T ss_dssp             CEETTBC
T ss_pred             ccccCCC
Confidence            7777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=5.4e-15  Score=128.58  Aligned_cols=91  Identities=24%  Similarity=0.279  Sum_probs=80.1

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34799999999999877777789999999999999999988888889999999999999999977776778899999999


Q ss_pred             ccCCCCccCCC
Q 038407          436 VAHNNLSGKIP  446 (528)
Q Consensus       436 ls~N~l~~~~p  446 (528)
                      +++|++.+..|
T Consensus       131 l~~N~~~~~~~  141 (177)
T 2o6r_A          131 LHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCeeccCc
Confidence            99999987655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=5.1e-15  Score=128.55  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=108.1

Q ss_pred             hhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcC
Q 038407            9 NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFL   88 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l   88 (528)
                      ..+.++++|++|++++|+++ .+|. +....++|++|++++|.+++.  ..+..+++|++|++++|.++ .+|..++..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence            34577889999999999987 5664 333445999999999999875  67888999999999999998 6666664558


Q ss_pred             CCCceeeccCCcCcccCCc--cccCCCCCCEEEccCCcccccCChh---hhhCCCCCCEEEccCCcCc
Q 038407           89 PSLKYFNISMNAFDSSIPT--SFGNMNFLISLDLSNNQLTGEIPEH---LAMGCVDLEYLLLSNNSLE  151 (528)
Q Consensus        89 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~  151 (528)
                      ++|++|++++|.+.. +|.  .+..+++|+.|++++|.++ .+|..   .+..+++|++|++++|...
T Consensus        88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            899999999999864 444  7888899999999999987 67764   3457888888888888665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1e-14  Score=126.60  Aligned_cols=131  Identities=23%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCC
Q 038407           60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD  139 (528)
Q Consensus        60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  139 (528)
                      +..+.+|++|++++|.++ .++. +....++|++|++++|.+++.  ..|..+++|++|++++|.++ .+|..++..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence            345566666777776666 4433 334344777777777777654  46667777777777777776 555555455666


Q ss_pred             CCEEEccCCcCcccCCc--cCCCCCCCCEEEccCCcCCccCcc----cCCCCCCCEEEccCCc
Q 038407          140 LEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFREILES----LSKCSSLEGLYLSDNN  196 (528)
Q Consensus       140 L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~L~~n~  196 (528)
                      |++|++++|.++. ++.  .+..+++|++|++++|.+..++..    +..+++|+.|++++|.
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            6666666666653 222  344555555555555555544432    4444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=5.6e-14  Score=120.98  Aligned_cols=90  Identities=22%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      +++++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            36999999999999888999999999999999999999888888999999999999999999877778999999999999


Q ss_pred             cCCCCccCCC
Q 038407          437 AHNNLSGKIP  446 (528)
Q Consensus       437 s~N~l~~~~p  446 (528)
                      ++|++....+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999986543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.50  E-value=5.8e-12  Score=124.25  Aligned_cols=159  Identities=14%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             cCChhhhhcCC-CCCEEEccCCCCccccCcCccCCCCCCEEEccCCc---CccccChhhhhcCCCCceeeccCCcCcccC
Q 038407           30 EFPNWLLENNT-KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN---LQGHIPVKIGDFLPSLKYFNISMNAFDSSI  105 (528)
Q Consensus        30 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~  105 (528)
                      .++...|.+++ .|+.+.+.. .++.....+|.+|.+|+.+.+..+.   ++ .+....+..+.+|+.+.+..+ ++.+.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence            34444466663 477777754 3555556667777777777776542   44 555566655666766666543 44455


Q ss_pred             CccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCC
Q 038407          106 PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS  185 (528)
Q Consensus       106 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~  185 (528)
                      ...|.++.+|+.+.+..+ +. .+....|..+..|+.+.+..+ ++......| ...+|+.+.+..+...--..++..+.
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~  205 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECF  205 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCT
T ss_pred             hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccccccchhhhcc
Confidence            566666777777776543 33 555555556666776666544 222222233 23456666665443222223555566


Q ss_pred             CCCEEEccCC
Q 038407          186 SLEGLYLSDN  195 (528)
Q Consensus       186 ~L~~L~L~~n  195 (528)
                      +++.......
T Consensus       206 ~l~~~~~~~~  215 (394)
T 4gt6_A          206 ALSTITSDSE  215 (394)
T ss_dssp             TCCEEEECCS
T ss_pred             ccceeccccc
Confidence            6665554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=4.2e-14  Score=137.30  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             cEEECCCC-cCccCCChhhhccccCCEEeCCC-ccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          360 SELDLSYN-KLIGQIPPQIGNLTRIQTLNLSY-NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       360 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |++++..+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788888 888 5787 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      +|+|++..+..+..+. |+.+++.+|+|.|+|++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999977766665554 99999999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=1.6e-13  Score=118.58  Aligned_cols=88  Identities=23%  Similarity=0.257  Sum_probs=81.4

Q ss_pred             CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      ++|++|++++|.+.+..|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            36999999999999888999999999999999999999877778899999999999999999777767999999999999


Q ss_pred             cCCCCccC
Q 038407          437 AHNNLSGK  444 (528)
Q Consensus       437 s~N~l~~~  444 (528)
                      ++|++...
T Consensus       113 ~~N~~~c~  120 (174)
T 2r9u_A          113 YNNPWDCE  120 (174)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCcccc
Confidence            99999854

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5.2e-16  Score=137.72  Aligned_cols=135  Identities=22%  Similarity=0.217  Sum_probs=91.0

Q ss_pred             hhCCCCCCEEEccCCcCcccCCh------hhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhh
Q 038407           11 FYHQHDLEFVRLSHLNLNGEFPN------WLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKI   84 (528)
Q Consensus        11 l~~~~~L~~L~Ls~~~~~~~~~~------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~   84 (528)
                      +...+.++.++++.+.+.+.+|.      . +..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            45567777777777777766664      3 5677888888888877776 44 6777777888888877777 666544


Q ss_pred             hhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCccc
Q 038407           85 GDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGH  153 (528)
Q Consensus        85 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~  153 (528)
                      .. +++|++|++++|++++. | .+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+++.
T Consensus        90 ~~-~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           90 AV-ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HH-HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             hc-CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccc
Confidence            43 56777777777777653 3 4666677777777777776 4443 2334566677777777666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.47  E-value=6.5e-12  Score=123.91  Aligned_cols=100  Identities=5%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +..|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.++
T Consensus       287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            3467888875 4455566678888888888888764 66566778888888888888654 6667777888888888888


Q ss_pred             ccCCCCccCCCCCCcccCCCCcCccc
Q 038407          436 VAHNNLSGKIPEWTAQFATFNESSYE  461 (528)
Q Consensus       436 ls~N~l~~~~p~~~~~~~~l~~l~l~  461 (528)
                      +.++....   ..+.....|+.+.+.
T Consensus       364 ~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          364 YSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             ESSCHHHH---HTCBCCCCC------
T ss_pred             ECCceeeh---hhhhccCCCCEEEeC
Confidence            88875431   123334445544443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=7.7e-16  Score=136.58  Aligned_cols=128  Identities=25%  Similarity=0.296  Sum_probs=60.8

Q ss_pred             CCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEE
Q 038407           88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRL  167 (528)
Q Consensus        88 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  167 (528)
                      +++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+. .+++|++|++++|+++                
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~----------------  106 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIA----------------  106 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECC----------------
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCC----------------
Confidence            4555555555555543 33 4455555555555555554 4443322 2344555555555444                


Q ss_pred             EccCCcCCccCcccCCCCCCCEEEccCCccCccCC-ccccCCCCCCeeecCCceeeccCcc----------cccCCCCCC
Q 038407          168 QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPM----------EFCQLDSLQ  236 (528)
Q Consensus       168 ~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~----------~l~~l~~L~  236 (528)
                              .++ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|.          .+..+++|+
T Consensus       107 --------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          107 --------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             --------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             --------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence                    432 23344444555555544442211 2344455555555555555433322          255566666


Q ss_pred             EEEcccCccc
Q 038407          237 ILNISDNNIS  246 (528)
Q Consensus       237 ~L~L~~n~l~  246 (528)
                      .|+  ++.++
T Consensus       178 ~Ld--~~~i~  185 (198)
T 1ds9_A          178 KLD--GMPVD  185 (198)
T ss_dssp             EEC--CGGGT
T ss_pred             EEC--CcccC
Confidence            665  44443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=1.6e-12  Score=126.04  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=90.9

Q ss_pred             CcccEEECCC-CcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          357 SYLSELDLSY-NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       357 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      .+|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3799999996 999988888999999999999999999999999999999999999999999977777777776 99999


Q ss_pred             ccCCCCccCCC-CCCcccCCCCcCcccCCCCCCCCCC
Q 038407          436 VAHNNLSGKIP-EWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       436 ls~N~l~~~~p-~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      |++|++..... .++..+.......+..+.+.|..+.
T Consensus       110 l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A          110 LSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             CCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             eeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            99999985422 1111222223344556677776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=5.3e-14  Score=136.93  Aligned_cols=109  Identities=18%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             CCCCEEEccCCcCccc----CCccCCCCCCCCEEEccCCcCCcc-----CcccCCCCCCCEEEccCCccCcc----CCcc
Q 038407          138 VDLEYLLLSNNSLEGH----LFPRNFNLTNLRRLQLDGNHFREI-----LESLSKCSSLEGLYLSDNNLSGK----IPRW  204 (528)
Q Consensus       138 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~  204 (528)
                      ++|++|++++|.++..    +...+...++|++|++++|.+...     ...+...++|++|++++|.+++.    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4455555555554421    111223455566666666655432     12345556677777777766542    2233


Q ss_pred             ccCCCCCCeeecCCceeeccCcccccCCC-----CCCEEE--cccCccc
Q 038407          205 LGNLSMLQHIILPENHFEGPIPMEFCQLD-----SLQILN--ISDNNIS  246 (528)
Q Consensus       205 l~~l~~L~~L~L~~n~i~~~~~~~l~~l~-----~L~~L~--L~~n~l~  246 (528)
                      +...++|++|+|++|.+++.....+..+.     .|+.+.  +..+.+.
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            44556777777777777654443333221     155555  5555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=8e-14  Score=135.67  Aligned_cols=161  Identities=20%  Similarity=0.162  Sum_probs=109.0

Q ss_pred             CCCCceeeccCCcCcccCCccccC-----CCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccC----
Q 038407           88 LPSLKYFNISMNAFDSSIPTSFGN-----MNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRN----  158 (528)
Q Consensus        88 l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----  158 (528)
                      .++|++|++++|.++......+..     .++|++|++++|.++......+...+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            457778888887776433333222     25788888888877643333444445678888888888865333333    


Q ss_pred             -CCCCCCCEEEccCCcCCcc-----CcccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeecc----
Q 038407          159 -FNLTNLRRLQLDGNHFREI-----LESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGP----  224 (528)
Q Consensus       159 -~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----  224 (528)
                       ...++|++|++++|.++..     ...+..+++|++|++++|.+.+.    ++..+...++|++|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2467899999999988653     22456778899999999888643    244566777888888888888753    


Q ss_pred             CcccccCCCCCCEEEcccCccccc
Q 038407          225 IPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       225 ~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      +...+...++|++|++++|.+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            233455668888888888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.27  E-value=1.2e-09  Score=107.21  Aligned_cols=304  Identities=10%  Similarity=0.076  Sum_probs=178.0

Q ss_pred             hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCC
Q 038407           36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL  115 (528)
Q Consensus        36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  115 (528)
                      +....+|+.+.+.. .++.....+|.+|.+|+.+++..+ ++ .++...+..+ +|+.+.+..+ ++.+...+|... +|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            34455566666643 344444556666666666666433 44 4555555544 5555555432 333444445443 56


Q ss_pred             CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc-------------CcccC
Q 038407          116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI-------------LESLS  182 (528)
Q Consensus       116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~~~~  182 (528)
                      +.+++..+ +. .+....|.++ +++.+.+..+ ++......+..+.+++...+..+.....             ...+.
T Consensus       116 ~~i~lp~~-~~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          116 DDFEFPGA-TT-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             SEEECCTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             ccccCCCc-cc-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            66666543 33 3444444333 4555544432 2223344455666666666554432211             11345


Q ss_pred             CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhcccccee
Q 038407          183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQL  262 (528)
Q Consensus       183 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  262 (528)
                      .+..+..+.+..... ......+..+..|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+              
T Consensus       192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I--------------  254 (379)
T 4h09_A          192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI--------------  254 (379)
T ss_dssp             TTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE--------------
T ss_pred             cccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe--------------
Confidence            556666666655432 244556777788888888655 33355667888888888887654 3322              


Q ss_pred             eeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceee
Q 038407          263 VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF  342 (528)
Q Consensus       263 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (528)
                                -..+|..+.+|+.+++..+ +.......+..                                       
T Consensus       255 ----------~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~---------------------------------------  284 (379)
T 4h09_A          255 ----------GSFLLQNCTALKTLNFYAK-VKTVPYLLCSG---------------------------------------  284 (379)
T ss_dssp             ----------CTTTTTTCTTCCEEEECCC-CSEECTTTTTT---------------------------------------
T ss_pred             ----------Cccccceeehhcccccccc-ceecccccccc---------------------------------------
Confidence                      2245677777888777543 22111112211                                       


Q ss_pred             eeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCc
Q 038407          343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP  422 (528)
Q Consensus       343 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  422 (528)
                                   +.+|+.+++.++.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+++.+..+ ++.+..
T Consensus       285 -------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~  349 (379)
T 4h09_A          285 -------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIES  349 (379)
T ss_dssp             -------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             -------------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEch
Confidence                         447888888877777666778889999999999754 66566778999999999998765 666677


Q ss_pred             cccccCCCC
Q 038407          423 LQLVELNTL  431 (528)
Q Consensus       423 ~~~~~l~~L  431 (528)
                      .+|.+++.+
T Consensus       350 ~aF~~c~~~  358 (379)
T 4h09_A          350 GAFEGSSIT  358 (379)
T ss_dssp             TTTTTSSCC
T ss_pred             hHhhCCCCC
Confidence            778776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.20  E-value=4.8e-09  Score=102.75  Aligned_cols=298  Identities=12%  Similarity=0.079  Sum_probs=171.5

Q ss_pred             cCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC
Q 038407           61 HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL  140 (528)
Q Consensus        61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  140 (528)
                      ....+|+.+.+.. .++ .|+...|..+.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .+....|.. .+|
T Consensus        43 ~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L  115 (379)
T 4h09_A           43 KDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCC
T ss_pred             ccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCc
Confidence            3445667776653 344 566666666677777777543 555556666665 5666666433 44 555555543 367


Q ss_pred             CEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCcc------------CCccccC
Q 038407          141 EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGK------------IPRWLGN  207 (528)
Q Consensus       141 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~------------~~~~l~~  207 (528)
                      +.+.+..+-.. .....|.+ .+++.+.+..+ +..+.. .+..+..++.+.+..+.....            ....+..
T Consensus       116 ~~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGATTE-IGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTTCCE-ECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCcccc-cccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            77776554221 22223333 24555554433 222322 555666666665554322110            0111122


Q ss_pred             CCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEE
Q 038407          208 LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLID  287 (528)
Q Consensus       208 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~  287 (528)
                      ...+..+.+...... .....+..+.+|+.+.+..                        + +......++..+..|+.+.
T Consensus       193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~------------------------~-~~~i~~~~f~~~~~L~~i~  246 (379)
T 4h09_A          193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITS------------------------G-VTTLGDGAFYGMKALDEIA  246 (379)
T ss_dssp             TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCT------------------------T-CCEECTTTTTTCSSCCEEE
T ss_pred             cccccccccccceeE-Eeecccccccccceeeecc------------------------c-eeEEccccccCCccceEEE
Confidence            222333322221111 2222333334444443322                        1 2223446788899999999


Q ss_pred             ccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCC
Q 038407          288 LSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYN  367 (528)
Q Consensus       288 ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  367 (528)
                      +..+ ++.....++..                                                    +.+|+.+.+..+
T Consensus       247 lp~~-v~~I~~~aF~~----------------------------------------------------~~~l~~i~l~~~  273 (379)
T 4h09_A          247 IPKN-VTSIGSFLLQN----------------------------------------------------CTALKTLNFYAK  273 (379)
T ss_dssp             ECTT-CCEECTTTTTT----------------------------------------------------CTTCCEEEECCC
T ss_pred             cCCC-ccEeCccccce----------------------------------------------------eehhcccccccc
Confidence            8765 33222222222                                                    346888888644


Q ss_pred             cCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCC
Q 038407          368 KLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE  447 (528)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  447 (528)
                       +......+|.++++|+.+++.++.++.+...+|.++.+|+.++|.++ ++.+...+|.++++|+.+.+..+ ++..-..
T Consensus       274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence             55456678999999999999999999888889999999999999865 77677889999999999998655 5544444


Q ss_pred             CCc
Q 038407          448 WTA  450 (528)
Q Consensus       448 ~~~  450 (528)
                      ++.
T Consensus       351 aF~  353 (379)
T 4h09_A          351 AFE  353 (379)
T ss_dssp             TTT
T ss_pred             Hhh
Confidence            443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=2.6e-09  Score=102.96  Aligned_cols=85  Identities=12%  Similarity=0.039  Sum_probs=43.8

Q ss_pred             hhhhCCCCCCEEEccCCcCc---------ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccc
Q 038407            9 NFFYHQHDLEFVRLSHLNLN---------GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH   79 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~~~~---------~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~   79 (528)
                      ++...+++|+.|.+......         +.+. .++..+|+|+.|+|++|.-. ..+. +. +++|++|++..+.+...
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence            34455677777776543221         1122 33466677777777665211 1121 22 56677777766665532


Q ss_pred             cChhhhh-cCCCCceeecc
Q 038407           80 IPVKIGD-FLPSLKYFNIS   97 (528)
Q Consensus        80 ~~~~~~~-~l~~L~~L~L~   97 (528)
                      ....+.. .+|+|++|+|+
T Consensus       209 ~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHHHccCCCCcEEEEe
Confidence            2222321 25667776664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=2.1e-09  Score=103.63  Aligned_cols=65  Identities=14%  Similarity=0.136  Sum_probs=36.3

Q ss_pred             CCCCCCEEEccCCccCccCCcccc---CCCCCCeeecCCceeeccC----cccccCCCCCCEEEcccCcccc
Q 038407          183 KCSSLEGLYLSDNNLSGKIPRWLG---NLSMLQHIILPENHFEGPI----PMEFCQLDSLQILNISDNNISG  247 (528)
Q Consensus       183 ~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~  247 (528)
                      .+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            356666666666655432222222   3566777777777666432    2223345677777777776653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=6.5e-09  Score=90.37  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=57.2

Q ss_pred             hhcCCCCCEEEccCC-CCccc----cCcCccCCCCCCEEEccCCcCccccChhhhh---cCCCCceeeccCCcCccc---
Q 038407           36 LENNTKLESNFLLNN-SLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD---FLPSLKYFNISMNAFDSS---  104 (528)
Q Consensus        36 ~~~l~~L~~L~L~~n-~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~i~~~---  104 (528)
                      +...+.|++|+|++| .+...    +...+...++|++|+|++|.+.......+..   ..++|++|+|++|.|...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344555555555555 44432    2233344455666666666554321111111   134566666666666532   


Q ss_pred             -CCccccCCCCCCEEEc--cCCcccccC----ChhhhhCCCCCCEEEccCCcCc
Q 038407          105 -IPTSFGNMNFLISLDL--SNNQLTGEI----PEHLAMGCVDLEYLLLSNNSLE  151 (528)
Q Consensus       105 -~~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~l~  151 (528)
                       +...+...+.|++|++  ++|.+....    ...+ ...+.|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCCC
Confidence             2334455566777777  566665321    1122 23466777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=7.7e-08  Score=83.50  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             cCchhhhCCCCCCEEEccCC-cCcccCCh---hhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCc
Q 038407            6 HSPNFFYHQHDLEFVRLSHL-NLNGEFPN---WLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQ   77 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~-~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~   77 (528)
                      .+...+...++|++|+|++| .+...-..   ..+...++|++|+|++|.+...    +...+...+.|++|+|++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34455666777777777777 66532111   1135567777777777777543    2333445567777777777776


Q ss_pred             cccChhhhh---cCCCCceeec--cCCcCccc----CCccccCCCCCCEEEccCCccc
Q 038407           78 GHIPVKIGD---FLPSLKYFNI--SMNAFDSS----IPTSFGNMNFLISLDLSNNQLT  126 (528)
Q Consensus        78 ~~~~~~~~~---~l~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~  126 (528)
                      +.-...+..   ..++|++|++  ++|.+...    +...+...+.|++|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            432111221   2456777777  66777643    2234445567777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=3.4e-08  Score=90.16  Aligned_cols=96  Identities=22%  Similarity=0.295  Sum_probs=63.5

Q ss_pred             EECCCCcCc---cCCChhhhccccCCEEeCCCccccc--cCCccccCCCCCCeeeCcCCcCcccCccccccCC--CCCEE
Q 038407          362 LDLSYNKLI---GQIPPQIGNLTRIQTLNLSYNNLTG--SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELN--TLAVF  434 (528)
Q Consensus       362 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L  434 (528)
                      ++++.|...   ...+.....+++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            556666432   1112223567888888888888886  3456667888888888888888865  2344444  88888


Q ss_pred             EccCCCCccCCCC-------CCcccCCCCcCc
Q 038407          435 NVAHNNLSGKIPE-------WTAQFATFNESS  459 (528)
Q Consensus       435 ~ls~N~l~~~~p~-------~~~~~~~l~~l~  459 (528)
                      ++++|++.+..|.       .+..+++|+.|+
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            8888888876653       234566666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=3.3e-07  Score=83.57  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=64.8

Q ss_pred             cCcccEEECCCCcCcc--CCChhhhccccCCEEeCCCccccccCCccccCCC--CCCeeeCcCCcCcccCc-------cc
Q 038407          356 ISYLSELDLSYNKLIG--QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLK--HIKSLDLSYNKLDGKIP-------LQ  424 (528)
Q Consensus       356 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~-------~~  424 (528)
                      +++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+..|       ..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            6789999999999997  3457788999999999999999965  3344444  99999999999987555       34


Q ss_pred             cccCCCCCEEE
Q 038407          425 LVELNTLAVFN  435 (528)
Q Consensus       425 ~~~l~~L~~L~  435 (528)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67899999987

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.25  E-value=9.5e-07  Score=71.30  Aligned_cols=61  Identities=18%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             eeeCcCCcCc-ccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          409 SLDLSYNKLD-GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       409 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..+..+++|+.+++.+|||.|+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            6677777775 23453322  3577888888888766666677778888888999999999865

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=2.7e-07  Score=77.98  Aligned_cols=84  Identities=11%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCcc-ccccCCccccCC----CCCCeeeCcCCc-CcccCccccccCCCC
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNN-LTGSIPSTFSNL----KHIKSLDLSYNK-LDGKIPLQLVELNTL  431 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  431 (528)
                      .|++||+++|.++..--..+.++++|+.|+|++|. +++.--..+..+    ++|++|+|++|. |+...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            69999999999886655667889999999999995 765433445554    479999999985 886666677889999


Q ss_pred             CEEEccCCCC
Q 038407          432 AVFNVAHNNL  441 (528)
Q Consensus       432 ~~L~ls~N~l  441 (528)
                      ++|++++|.-
T Consensus       142 ~~L~L~~c~~  151 (176)
T 3e4g_A          142 KYLFLSDLPG  151 (176)
T ss_dssp             CEEEEESCTT
T ss_pred             CEEECCCCCC
Confidence            9999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=5.3e-07  Score=76.12  Aligned_cols=85  Identities=8%  Similarity=0.013  Sum_probs=57.7

Q ss_pred             CCCCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhc---CCCCceeeccCCc-CcccCCccccCCCC
Q 038407           40 TKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDF---LPSLKYFNISMNA-FDSSIPTSFGNMNF  114 (528)
Q Consensus        40 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~---l~~L~~L~L~~n~-i~~~~~~~~~~l~~  114 (528)
                      .+|++||+++|.++...-..+.++++|++|+|++|. +++.--..+...   .++|++|++++|. |++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467888888888777666667788888888888874 664332333331   2468888888874 66544455667778


Q ss_pred             CCEEEccCCc
Q 038407          115 LISLDLSNNQ  124 (528)
Q Consensus       115 L~~L~l~~n~  124 (528)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888887775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.38  E-value=6.1e-05  Score=64.82  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=50.4

Q ss_pred             hcCCCCCEEEccCC-CCccc----cCcCccCCCCCCEEEccCCcCccccChhhhh---cCCCCceeeccCCcCccc----
Q 038407           37 ENNTKLESNFLLNN-SLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD---FLPSLKYFNISMNAFDSS----  104 (528)
Q Consensus        37 ~~l~~L~~L~L~~n-~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~i~~~----  104 (528)
                      .+-+.|++|+|++| .+...    +.+++..-+.|+.|+|++|.+.+.....+..   .-+.|++|+|++|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33445555555543 44321    2233444455555555555554222111111   134566666666655432    


Q ss_pred             CCccccCCCCCCEEEccCCcc---ccc----CChhhhhCCCCCCEEEccCCcC
Q 038407          105 IPTSFGNMNFLISLDLSNNQL---TGE----IPEHLAMGCVDLEYLLLSNNSL  150 (528)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~n~l---~~~----~~~~~~~~l~~L~~L~l~~n~l  150 (528)
                      +...+..-+.|++|+++++..   ...    +...+ ..-+.|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCc
Confidence            112333344566666654422   211    11122 2345667777765543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.00082  Score=53.90  Aligned_cols=55  Identities=24%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             EEECCCCcCc-cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcC
Q 038407          361 ELDLSYNKLI-GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL  417 (528)
Q Consensus       361 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  417 (528)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666654 23343221  2456666666666655555555555666666665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00015  Score=62.32  Aligned_cols=64  Identities=9%  Similarity=0.139  Sum_probs=34.0

Q ss_pred             ccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccC
Q 038407          180 SLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDN  243 (528)
Q Consensus       180 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n  243 (528)
                      .+..-..|+.|+|++|.+.+.    +.+.+..-+.|++|+|++|.|.+.    +..++..-+.|++|+|++|
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            344445566666666655432    222333445666666666666533    2233444556777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	528
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.7 bits (213), Expect = 2e-19
 Identities = 62/295 (21%), Positives = 102/295 (34%), Gaps = 33/295 (11%)

Query: 182 SKCSSLEGLYLSDNNLSGK--IPRWLGNLSMLQHIILPENH-FEGPIPMEFCQLDSLQIL 238
           ++   +  L LS  NL     IP  L NL  L  + +   +   GPIP    +L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
            I+  N+SG          +   L  ++N   G +P  +  L  L  I    N +SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISY 358
               + +   + +  S           +    +    +                      
Sbjct: 167 DSYGSFSKLFTSMTISR-----NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
            ++        +     ++G    +  L+L  N + G++P   + LK + SL++S     
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS----- 276

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPK 473
                               NNL G+IP+       F+ S+Y  N  LCG PLP 
Sbjct: 277 -------------------FNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 55/310 (17%), Positives = 93/310 (30%), Gaps = 53/310 (17%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
           + +LDLS   L    P                                            
Sbjct: 52  VNNLDLSGLNLPKPYP-------------------------------------------- 67

Query: 175 REILESLSKCSSLEGLYLSDN-NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233
             I  SL+    L  LY+    NL G IP  +  L+ L ++ +   +  G IP    Q+ 
Sbjct: 68  --IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
           +L  L+ S N +SG    +     +   +    N   G +P      +KL      +   
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 294 SGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353
                P             + +    + S +       ++  + +             + 
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245

Query: 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
                L    +      G +P  +  L  + +LN+S+NNL G IP    NL+       +
Sbjct: 246 LNGLDLRNNRIY-----GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 414 YNKLDGKIPL 423
            NK     PL
Sbjct: 300 NNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 51/268 (19%), Positives = 78/268 (29%), Gaps = 47/268 (17%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           LD+S  NL    P                       IP+S  N+ +L  L +        
Sbjct: 55  LDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIGGINNLVG 91

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILES-LSKCSSL 187
                      L YL +++ ++ G +      +  L  L    N     L   +S   +L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 188 EGLYLSDNNLSGKIPRWLGNLSML-----------------------QHIILPENHFEGP 224
            G+    N +SG IP   G+ S L                          +    +    
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 225 IPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQ 284
                   D          N          LS + + L L +N   G +P  L QL  L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 285 LIDLSNNILSGHIPPCLDNTTLHESYID 312
            +++S N L G IP   +      S   
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 89  PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNN 148
            +L   ++  N    ++P     + FL SL++S N L GEIP+         +    +NN
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

Query: 149 SL 150
             
Sbjct: 302 KC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 4/197 (2%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
             P+F      L  +  S+  L+G  P  +  +   L       N + G           
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
           L      + N    +  KI     +L    + ++        S    +   +  +   + 
Sbjct: 175 LFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 126 TGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS 185
           +            +L  L L NN + G L      L  L  L +  N+    +       
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 186 SLEGLYLSDNNLSGKIP 202
             +    ++N      P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 2e-17
 Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 6/242 (2%)

Query: 54  GLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN 113
           GL  +P        LLD+ NN +         + L +L    +  N      P +F  + 
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLV 79

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH 173
            L  L LS NQL  E+PE +     +L         +   +F     +  +         
Sbjct: 80  KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233
                 +      L  + ++D N++  IP+  G    L  + L  N            L+
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293
           +L  L +S N+IS    + S+ +    + +  +NN   +VP  L     +Q++ L NN +
Sbjct: 196 NLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 294 SG 295
           S 
Sbjct: 255 SA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 61/320 (19%), Positives = 95/320 (29%), Gaps = 47/320 (14%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162
             +P           LDL NN++T            +L  L+L NN +          L 
Sbjct: 23  EKVPKDLPPD--TALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLV 79

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIIL--PENH 220
            L RL L  N  +E+ E + K      L + +N ++         L+ +  + L      
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL 280
             G     F  +  L  + I+D NI+ I      L  S  +L L  N         L  L
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGL 194

Query: 281 NKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340
           N L  + LS N +S      L NT         +                          
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-------------------------- 228

Query: 341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIG------QIPPQIGNLTRIQTLNLSYNNLT 394
               K +          Y+  + L  N +          P           ++L  N + 
Sbjct: 229 ---NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

Query: 395 GS--IPSTFSNLKHIKSLDL 412
                PSTF  +    ++ L
Sbjct: 286 YWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 9e-12
 Identities = 53/309 (17%), Positives = 94/309 (30%), Gaps = 35/309 (11%)

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
           +LR +Q       ++ + L        L L +N ++        NL  L  +IL  N   
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
              P  F  L  L+ L +S N +  +                        V   L Q+  
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
           ++L                    L    I  ++  +                        
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL------------------- 169

Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
                           L+EL L  NK+       +  L  +  L LS+N+++     + +
Sbjct: 170 -------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 403 NLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEG 462
           N  H++ L L+ NKL  K+P  L +   + V  + +NN+S              + +   
Sbjct: 217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 463 NPFLCGLPL 471
              L   P+
Sbjct: 276 GVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 13/246 (5%)

Query: 7   SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL 66
               F +  +L  + L +  ++   P        KLE  +L  N L  L        + L
Sbjct: 47  KDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKELPEKMPKTLQEL 105

Query: 67  MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLT 126
            + +     ++  +   +      +     +          +F  M  L  + +++  +T
Sbjct: 106 RVHENEITKVRKSVFNGLN--QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 127 GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSS 186
             IP+ L      L  L L  N +          L NL +L L  N    +       + 
Sbjct: 164 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 187 LEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC------QLDSLQILNI 240
                  +NN   K+P  L +   +Q + L  N+       +FC      +  S   +++
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 241 SDNNIS 246
             N + 
Sbjct: 280 FSNPVQ 285

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 5e-17
 Identities = 69/389 (17%), Positives = 124/389 (31%), Gaps = 40/389 (10%)

Query: 64  KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
              M   +   N+   +       L  +           S        +N L  ++ SNN
Sbjct: 22  AEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI------ 177
           QLT   P       VD+         +       N     L   Q+      +       
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 178 -------LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFC 230
                  +  +S  S L  L            + L NL+ L+ + +  N           
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLA 194

Query: 231 QLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290
           +L +L+ L  ++N IS I     + +L +  L L  N  +      L  L  L  +DL+N
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDE--LSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT 350
           N +S  + P    T L E  +          +      +           +     +   
Sbjct: 251 NQISN-LAPLSGLTKLTELKLG---------ANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 351 YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                +  L+ L L +N +    P  + +LT++Q L  + N ++    S+ +NL +I  L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHN 439
              +N++    PL    L  +    +   
Sbjct: 357 SAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 9e-13
 Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 18/197 (9%)

Query: 23  SHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82
           ++  ++   P       T L+   L  N L  +    +    +L  LD++NN +    P+
Sbjct: 205 TNNQISDITPLG---ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPL 259

Query: 83  KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY 142
                L  L    +  N   +  P     +  L +L                    +L Y
Sbjct: 260 S---GLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIP 202
           L L  N++         +LT L+RL    N   ++  SL+  +++  L    N +S   P
Sbjct: 312 LTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDLTP 368

Query: 203 RWLGNLSMLQHIILPEN 219
             L NL+ +  + L + 
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 11  FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLD 70
                 L  ++L    ++   P   L   T LE N      +      PI   K+L  L 
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-----PISNLKNLTYLT 313

Query: 71  VSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP 130
           +  NN+    PV     L  L+    + N    S  +S  N+  +  L   +NQ++   P
Sbjct: 314 LYFNNISDISPVS---SLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP 368

Query: 131 EHLAMGCVDLEYLLLSNN 148
                    +  L L++ 
Sbjct: 369 LA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
              +   +  +L ++ L   N++   P   + + TKL+  F  NN +  +    +    +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SLANLTN 352

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNA 100
           +  L   +N +    P+     L  +    ++  A
Sbjct: 353 INWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 3e-16
 Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 3/256 (1%)

Query: 54  GLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMN 113
           GL  +P+    +   + +  N +   +P        +L    +  N        +F  + 
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH 173
            L  LDLS+N     +      G   L  L L    L+         L  L+ L L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 174 FREIL-ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQL 232
            + +  ++     +L  L+L  N +S    R    L  L  ++L +N      P  F  L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
             L  L +  NN+S +   A     +   L L  N +  +   +      LQ    S++ 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSE 259

Query: 293 LSGHIPPCLDNTTLHE 308
           +   +P  L    L  
Sbjct: 260 VPCSLPQRLAGRDLKR 275

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 44/260 (16%), Positives = 76/260 (29%), Gaps = 10/260 (3%)

Query: 162 TNLRRLQLDGNHFREIL-ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
              +R+ L GN    +   S   C +L  L+L  N L+         L++L+ + L +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 221 FEGPI-PMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
               + P  F  L  L  L++    +  +         +   L L  N  +         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 280 LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET 339
           L  L  + L  N +S              S       ++         F           
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLH---SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS 399
           F      +       + + L  L L+ N  +            +Q    S + +  S+P 
Sbjct: 209 FANNLSALPTEALAPLRA-LQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP- 265

Query: 400 TFSNLKHIKSLDLSYNKLDG 419
               L       L+ N L G
Sbjct: 266 --QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 4e-11
 Identities = 57/256 (22%), Positives = 82/256 (32%), Gaps = 10/256 (3%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
                  LQ  +PV I     + +   +  N        SF     L  L L +N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKC-SSL 187
                    +  +  L  N  L          L  L  L LD    +E+   L +  ++L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG 247
           + LYL DN L         +L  L H+ L  N         F  L SL  L +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 248 IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC-----LD 302
           ++ HA         L L  NN        L  L  LQ + L++N              L 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 303 NTTLHESYIDTSSPES 318
                 S +  S P+ 
Sbjct: 252 KFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 6e-11
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 5/218 (2%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
                F     LE + LS                 +L +  L    L  L         +
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
           L  L + +N LQ        D   +L +  +  N   S    +F  ++ L  L L  N++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 126 TGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS 185
               P         L  L L  N+L          L  L+ L+L+ N +     +    +
Sbjct: 190 AHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223
            L+    S + +   +P+ L    + +   L  N  +G
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 6/242 (2%)

Query: 230 CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289
           C  +     +     +  +      +  +  ++ L  N               L ++ L 
Sbjct: 8   CYNEPKVTTSCPQQGLQAV---PVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 290 NNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY 349
           +N+L+           L E    + + +          F            +   + +  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 350 TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409
                + + L  L L  N L         +L  +  L L  N ++      F  L  +  
Sbjct: 123 GLFRGLAA-LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGL 469
           L L  N++    P    +L  L    +  NNLS    E  A            NP++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 470 PL 471
             
Sbjct: 242 RA 243

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 38/265 (14%), Positives = 81/265 (30%), Gaps = 17/265 (6%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           LD++  NL   +  ++      +  F    +  D  +   F     +  +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLE 188
               +   C  L+ L L    L   +       +NL RL L G          +  SS  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 189 GLYLSDNNLSGKIPRW------LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD 242
            L   + +                    +  + L               +     L   D
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 243 NNISGIYHHASILSLSKDQ----LVLAH-NNFEGEVPIQLCQLNKLQLIDLSNNILSG-- 295
            + S +  +       +      L L+   +   E  ++L ++  L+ + +   +  G  
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 296 -HIPPCLDNTTLHESYIDTSSPESS 319
             +   L +  ++ S+  T +  + 
Sbjct: 242 QLLKEALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 45/297 (15%), Positives = 87/297 (29%), Gaps = 53/297 (17%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE 176
           +LDL+   L  ++   L      +       + ++  L   +F+   ++ + L  +    
Sbjct: 4   TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 60

Query: 177 --ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILP--ENHFEGPIPMEFCQL 232
             +   LS+CS L+ L L    LS  I   L   S L  + L       E  +       
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNI 292
             L  LN+S        H    +                        + +L L     N+
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAV------------------AHVSETITQLNLSGYRKNL 162

Query: 293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYR 352
               +   +           + S       F +                           
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ------------------------ 198

Query: 353 GRVISYLSELDLSY-NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIK 408
              ++YL  L LS    +I +   ++G +  ++TL +      G++      L H++
Sbjct: 199 ---LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 9/240 (3%)

Query: 190 LYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIY 249
           L L+  NL   +   L +   +     P +  + P+   F     +Q +++S++ I    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 250 HHASILSLSKDQ-LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLH- 307
            H  +   SK Q L L        +   L + + L  ++LS              ++   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 308 ----ESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELD 363
                        E      V        +  +    K   K+   T   R  + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 364 LSYNKLIGQIPPQIGNLTRIQTLNLSY-NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
                L      +   L  +Q L+LS   ++          +  +K+L +     DG + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 13/234 (5%)

Query: 20  VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79
           + L+  NL+ +    LL         F    S     L        +  +D+SN+ ++  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVI---AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 80  IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL-SNNQLTGEIPEHLAMGCV 138
               I      L+  ++        I  +    + L+ L+L   +  +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 139 DLEYLLLSNNSLEGH--------LFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGL 190
            L+ L LS                        NL   + +              + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 191 YLSDNNLSGKIPRWLGNLSMLQHIILPE-NHFEGPIPMEFCQLDSLQILNISDN 243
                 L     +    L+ LQH+ L           +E  ++ +L+ L +   
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 367 NKLIGQIPPQIGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDGKIPLQL 425
              + Q   +  +  R+Q ++LS + +   ++    S    +++L L   +L   I   L
Sbjct: 32  RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91

Query: 426 VELNTLAVFNVAHNN 440
            + + L   N++  +
Sbjct: 92  AKNSNLVRLNLSGCS 106

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 6/189 (3%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162
           +++P           L LS N L       L      L  L L     E      +  L 
Sbjct: 23  TALPPDLPKD--TTILHLSENLLYTFSLATLM-PYTRLTQLNLDRA--ELTKLQVDGTLP 77

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
            L  L L  N  + +        +L  L +S N L+      L  L  LQ + L  N  +
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
              P        L+ L++++NN++ +         + D L+L  N+    +P      + 
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 283 LQLIDLSNN 291
           L    L  N
Sbjct: 197 LPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 37/239 (15%), Positives = 60/239 (25%), Gaps = 35/239 (14%)

Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
            +SK +S   +     NL+  +P  L        + L EN               L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP 299
           +    ++ +                               L  L  +DLS+N L      
Sbjct: 62  LDRAELTKLQVD--------------------------GTLPVLGTLDLSHNQLQSLPLL 95

Query: 300 CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYL 359
                 L    +  +   S     +       +        K     +           L
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 360 SELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
           +      N L       +  L  + TL L  N+L  +IP  F     +    L  N   
Sbjct: 156 A-----NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 11/214 (5%)

Query: 228 EFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLID 287
           E  ++ S   +N    N++ +      L      L L+ N         L    +L  ++
Sbjct: 5   EVSKVASHLEVNCDKRNLTAL---PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 288 LSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI 347
           L        +        L    +  +  +S              +             +
Sbjct: 62  LDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 348 AYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407
                 + +          N+L    P  +    +++ L+L+ NNLT       + L+++
Sbjct: 121 RGLGELQELYL------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
            +L L  N     IP      + L    +  N  
Sbjct: 175 DTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 9/206 (4%)

Query: 40  TKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN 99
           +K+ S+  +N     L  LP    K   +L +S N L       +      L   N+   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLD-- 63

Query: 100 AFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF 159
               +  T       L  L   +          L    +    +L  + +    L     
Sbjct: 64  ---RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 160 -NLTNLRRLQLDGNHFREILESLSKCSSLEGL-YLSDNNLSGKIPRWLGNLSMLQHIILP 217
             L  L+ L L GN  + +   L   +       L++NNL+      L  L  L  ++L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 218 ENHFEGPIPMEFCQLDSLQILNISDN 243
           EN     IP  F     L    +  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 7e-05
 Identities = 39/234 (16%), Positives = 63/234 (26%), Gaps = 34/234 (14%)

Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
            + +   +  D  +   +   L K      L+LS+N L       L   + L  + L  +
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--D 63

Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279
             E         L  L  L++S N +  +         +   L ++ N         L  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRG 122

Query: 280 LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET 339
           L +LQ + L  N L    P  L  T   E     ++  +                     
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE---------------LPAGL 167

Query: 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNL 393
                           +  L  L L  N L   IP        +    L  N  
Sbjct: 168 LNG-------------LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 33/182 (18%), Positives = 50/182 (27%), Gaps = 6/182 (3%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN 75
           D   + LS   L   F    L   T+L    L    L       +    +L +L   + +
Sbjct: 32  DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT-----KLQVDGTLPVLGTLDLS 85

Query: 76  LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM 135
                 + +                  +S+P         +            +P  L  
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 136 GCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDN 195
               LE L L+NN+L          L NL  L L  N    I +       L   +L  N
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 196 NL 197
             
Sbjct: 206 PW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 2/157 (1%)

Query: 19  FVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQG 78
           + RL+ LNL+      L  + T      L  +      L  +      + +   + N   
Sbjct: 54  YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 79  HIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCV 138
            +P+     L  L+   +  N   +  P        L  L L+NN LT      L  G  
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLE 172

Query: 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR 175
           +L+ LLL  NSL   +    F    L    L GN + 
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 55/334 (16%), Positives = 103/334 (30%), Gaps = 31/334 (9%)

Query: 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174
              L+L+N  L+  +PE        LE L+ S NSL     P      +L+ L +D N+ 
Sbjct: 40  AHELELNNLGLS-SLPELPP----HLESLVASCNSLTE--LPEL--PQSLKSLLVDNNNL 90

Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
           + +            L     + +          S    II  +N+    +P     L+ 
Sbjct: 91  KAL------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 235 LQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294
           +   N     +  + +             +  +N   +    L    +  +   +     
Sbjct: 145 IAAGNNQLEELPELQNL-------PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197

Query: 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354
             +      TT++       +      S             + E  +  T          
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
            +S L       N    +I         ++ LN+S N L   +P+    L+    L  S+
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASF 313

Query: 415 NKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEW 448
           N L  ++P     L  L   +V +N L  + P+ 
Sbjct: 314 NHL-AEVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 67/329 (20%), Positives = 110/329 (33%), Gaps = 31/329 (9%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162
           SS+P    +   L SL  S N LT E+PE        L+ LL+ NN+L+        +L 
Sbjct: 51  SSLPELPPH---LESLVASCNSLT-ELPELPQ----SLKSLLVDNNNLKAL-----SDLP 97

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
            L       N+  E L  L   S L+ + + +N+L                  +   + +
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL------KKLPDLPPSLEFIAAGNNQ 151

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
                E   L  L  +   +N++  +      L        +     E +    L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
              +  +             N   +        P+S     V E       +     +  
Sbjct: 212 DNNLLKTLPD--LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
              +        +   L EL++S NKLI ++P     L R   L  S+N+L   +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQ 324

Query: 403 NLKHIKSLDLSYNKLDG--KIPLQLVELN 429
           NLK    L + YN L     IP  + +L 
Sbjct: 325 NLKQ---LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 14/142 (9%)

Query: 6   HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKS 65
                    +  +   L       +    +    ++L  N    N+             S
Sbjct: 226 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 285

Query: 66  LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
           L  L+VSNN L      ++    P L+    S N   + +P    N   L  L +  N L
Sbjct: 286 LEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPL 336

Query: 126 TGEIPEHLAMGCVDLEYLLLSN 147
             E P+        +E L +++
Sbjct: 337 R-EFPDIPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRW 204
              N+    +        +L  L +  N   E+         LE L  S N+L+ ++P  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLA-EVPEL 322

Query: 205 LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
             N   L+ + +  N      P     ++ L++ +
Sbjct: 323 PQN---LKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYN 415
              S L  + +  +      +     +  L +        +       L  +++L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471
            L    P        L+  N++ N L   +   T Q  +  E    GNP  C   L
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 2/130 (1%)

Query: 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE 176
            L  + +    +   HL       E  + +   L+         L  LR L +  +  R 
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 177 ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME-FCQLDSL 235
           +       +          N    +         LQ ++L  N       +    + +  
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 236 QILNISDNNI 245
            +  + +  +
Sbjct: 131 GLGGVPEQKL 140

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHI 214
           P          L+   +   + L  L    +L  LY+ +      +    L  L  L+++
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 215 ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVP 274
            + ++      P  F     L  LN+S N +  +          ++  VL+ N       
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL-VLSGNPLHCSCA 120

Query: 275 IQ-LCQLNKLQLIDLSNNILSGHIPPCLDN 303
           ++ L +  +  L  +    L  H    L +
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAH 150

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 25/118 (21%), Positives = 34/118 (28%), Gaps = 1/118 (0%)

Query: 103 SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162
                       L  L + N Q    +      G  +L  L +  + L            
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS-GKIPRWLGNLSMLQHIILPEN 219
            L RL L  N    +     +  SL+ L LS N L      RWL          +PE 
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQ 138

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTG----SIPSTFSNLKHIKSLDLS 413
           +  LD+   +L      ++   L + Q + L    LT      I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEW 448
            N+L       +++        +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 5e-07
 Identities = 41/446 (9%), Positives = 106/446 (23%), Gaps = 16/446 (3%)

Query: 16  DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPI----HCHKSLMLLDV 71
           D++ + +    L+      LL    + +   L +  L       I      + +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 72  SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE 131
            +N L       +   L +       ++  +  +  +   +       L   Q       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 132 HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLY 191
            L    + L    L +           +   +    +   +  R   +      S   + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
            +   +  +  +          +       +    +         +  ++  +       
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI 311
            + L                       +        L        +    +      + +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 312 DTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG 371
              +                       +   +            IS     D    +   
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--- 359

Query: 372 QIPPQIGNLTRIQTLNLSYNNLTG----SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427
                    + ++ L L+  +++     S+ +T      ++ LDLS N L     LQLVE
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 428 -----LNTLAVFNVAHNNLSGKIPEW 448
                   L    +     S ++ + 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 8e-05
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 23/120 (19%)

Query: 93  YFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG---CVDLEYLLLSNNS 149
              +                + L  L L++  ++      LA        L  L LSNN 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN- 407

Query: 150 LEGHLFPRNFNLTNLRRLQLDGNHFREILESLSK-CSSLEGLYLSDNNLSGKIPRWLGNL 208
                              L      +++ES+ +    LE L L D   S ++   L  L
Sbjct: 408 ------------------CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 9e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 160 NLTNLRRLQLDGNHF-----REILESLSKCSSLEGLYLSDNNLSGKIPRWLG-----NLS 209
             + LR L L            +  +L    SL  L LS+N L       L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 210 MLQHIILPENHFEGPIPMEFCQLD----SLQIL 238
           +L+ ++L + ++   +      L+    SL+++
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 6e-07
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHII 215
            +  N    R L L G     I    +     + +  SDN +  K+  +   L  L+ ++
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKTLL 69

Query: 216 LPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPI 275
           +  N            L  L  L +++N++  +     + SL     +    N       
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 276 Q----LCQLNKLQLIDLS 289
                + ++ +++++D  
Sbjct: 130 YRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 375 PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF 434
            Q  N  R + L+L    +   I +  + L    ++D S N++          L  L   
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 435 NVAHNNLSGKIPEW 448
            V +N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 108 SFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRL 167
            + N      LDL   ++   + E+L       + +  S+N +          L  L+ L
Sbjct: 13  QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 168 QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIP-----RWLGNLSMLQHIILPENHFE 222
            ++ N    I E L +        +  NN   ++        L +L+ L  +  P  + +
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 223 GPIPMEFCQLDSLQILN 239
                   ++  +++L+
Sbjct: 129 HYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
             ELDL   K I  I      L +   ++ S N +       F  L+ +K+L ++ N++ 
Sbjct: 20  DRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRIC 76

Query: 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
                    L  L    + +N+L                        +    
Sbjct: 77  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 44/320 (13%), Positives = 91/320 (28%), Gaps = 31/320 (9%)

Query: 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF-----REILESLSKCSSLEGLYLS 193
            L+   ++    +  +F       +++ + L GN       R + E+++    LE    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 194 DN---NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH 250
           D     +  +IP  L  L          +                 I  +S +      +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 251 HASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESY 310
             +     +    +A    E  V  +      L+ I    N L          T      
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 311 IDTSSPESSETSFVDEGFAFYK---------EKKIQETFKFTTKNIAYTYRGRVISYLSE 361
           + T     +            +            +Q+       + A     +    L E
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 362 LDLSYNKLIGQIPPQIGN------LTRIQTLNLSYNNLTGSIPST-----FSNLKHIKSL 410
           L L+   L  +    + +         +QTL L YN +      T        +  +  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 411 DLSYNKL--DGKIPLQLVEL 428
           +L+ N+   +  +  ++ E+
Sbjct: 308 ELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 41/337 (12%), Positives = 86/337 (25%), Gaps = 31/337 (9%)

Query: 90  SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMG---CVDLEYLLLS 146
           SLK   I+     S +       + +  + LS N +  E    L+       DLE    S
Sbjct: 9   SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 147 NNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLG 206
           +                 R         R +L++L KC  L  + LSDN         L 
Sbjct: 68  DIFTG-------------RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 114

Query: 207 NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAH 266
           +       +         +  +     +  +  ++ N  +        +   +++L    
Sbjct: 115 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 174

Query: 267 NNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDE 326
                +       L+ ++++                     E  +      +        
Sbjct: 175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 234

Query: 327 GFAFYKEKKIQETFKFTTKNIAYTYRGRVISY--------LSELDLSYNKLIGQIPPQI- 377
                K              ++      V+          L  L L YN++       + 
Sbjct: 235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294

Query: 378 ----GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
                 +  +  L L+ N            ++ + S 
Sbjct: 295 TVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFST 330

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 24/215 (11%), Positives = 65/215 (30%), Gaps = 14/215 (6%)

Query: 207 NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS---GIYHHASILSLSKDQLV 263
            L+    I   +++    +      LD +  L+     ++   G+ +  +++ L      
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSF 323
           +        +            +   + I        LD T+   + +   +  S+    
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 324 VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS-----YLSELDLSYNKLIGQIPPQIG 378
             +         +         +I       +        L+ L    NK+    P  + 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 379 NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
           +L  +  ++L  N ++   P   +N  ++  + L+
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 26/254 (10%), Positives = 52/254 (20%), Gaps = 26/254 (10%)

Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
           + R      +   EI   L +  +   L      L             L+ I + +N   
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
             I  +             +                        NN     P     L  
Sbjct: 67  EVIEADVFSNLPKLHEIRIEK----------------------ANNLLYINPEAFQNLPN 104

Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
           LQ + +SN  +         ++          +               ++   +      
Sbjct: 105 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW--LNK 162

Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
                 +                 N L           +    L++S   +         
Sbjct: 163 NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 222

Query: 403 NLKHIKSLDLSYNK 416
           NLK +++      K
Sbjct: 223 NLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 20/207 (9%)

Query: 207 NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAH 266
             +      L +      +     +L+S+  +  ++++I  +     + +++K  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVTK--LFLNG 77

Query: 267 NNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDE 326
           N      P+   +      +D +       +       +L   +   S            
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI---------- 127

Query: 327 GFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL 386
                     Q    +   N              +     +  I  I P +  LT++Q L
Sbjct: 128 ---NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183

Query: 387 NLSYNNLTGSIPSTFSNLKHIKSLDLS 413
            LS N+++       + LK++  L+L 
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELF 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI 201
            L L++  L          L  +  L L  N  R +  +L+    LE L  SDN L    
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 202 PRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQILNISDNNISGI 248
                NL  LQ ++L  N  +             L +LN+  N++   
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS---------------------T 400
           L L++  L   +   +  L  +  L+LS+N L    P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 401 FSNLKHIKSLDLSYNKL-DGKIPLQLVELNTLAVFNVAHNNLSGK 444
            +NL  ++ L L  N+L        LV    L + N+  N+L  +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 165 RRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP 224
           R L L       +L  L +   +  L LS N L    P  L  L  L+ +   +N  E  
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 225 IPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGE 272
             +        Q L + +N +        ++S  +   L L  N+   E
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 69  LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
           L +++ +L     +   + L  + + ++S N   +  P +   +  L  L  S+N L   
Sbjct: 3   LHLAHKDLTVLCHL---EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 129 IPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF-NLTNLRRLQLDGNHFREILESLSKCSSL 187
                       + LLL NN L+     +   +   L  L L GN   +      + + +
Sbjct: 59  DGVANLPRL---QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 20  VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79
                L+L G   +  L            ++    L ++  +    L+ L++SNN L   
Sbjct: 22  GSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENI-PELLSLNLSNNRLYRL 80

Query: 80  IPVKIG-DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEH 132
             +       P+LK  N+S N   S           L  L L  N L+    + 
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	528
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.1e-31  Score=252.34  Aligned_cols=257  Identities=32%  Similarity=0.509  Sum_probs=193.3

Q ss_pred             CCCEEEccCCcCcc--cCCccCCCCCCCCEEEccC-CcCC-ccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCee
Q 038407          139 DLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDG-NHFR-EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI  214 (528)
Q Consensus       139 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  214 (528)
                      .++.|+++++.+++  .+|+.+.++++|++|++++ |.+. .+|+.+.++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46666666666654  2455666666666666654 4444 344556666666666666666665555556666666666


Q ss_pred             ecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCC-CEEEccCCcC
Q 038407          215 ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKL-QLIDLSNNIL  293 (528)
Q Consensus       215 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L-~~L~ls~n~l  293 (528)
                      ++++|.+.+.+|..+..++.++.+++++|.+.                        +.+|..+..+..+ +.+++++|++
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~------------------------~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS------------------------GAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCE------------------------EECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccc------------------------cccccccccccccccccccccccc
Confidence            66666666566666666666666666555544                        4555666677665 7889999988


Q ss_pred             CcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCC
Q 038407          294 SGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQI  373 (528)
Q Consensus       294 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  373 (528)
                      ++..|..+...                                                     ....++++++...+.+
T Consensus       187 ~~~~~~~~~~l-----------------------------------------------------~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         187 TGKIPPTFANL-----------------------------------------------------NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             EEECCGGGGGC-----------------------------------------------------CCSEEECCSSEEEECC
T ss_pred             ccccccccccc-----------------------------------------------------cccccccccccccccc
Confidence            87666554332                                                     2557899999999899


Q ss_pred             ChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccC
Q 038407          374 PPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA  453 (528)
Q Consensus       374 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  453 (528)
                      |..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..+..+++|++|+|++|+++|.+|+. .++.
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L~  291 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ  291 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccCC
Confidence            9999999999999999999997655 6889999999999999999999999999999999999999999999974 5899


Q ss_pred             CCCcCcccCCCCCCCCCCCCCC
Q 038407          454 TFNESSYEGNPFLCGLPLPKSC  475 (528)
Q Consensus       454 ~l~~l~l~~Np~~c~~~l~~~c  475 (528)
                      +|+.+++.||+.+||.|++ .|
T Consensus       292 ~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         292 RFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCHHHhCCCccccCCCCC-CC
Confidence            9999999999999999986 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=3.4e-28  Score=238.44  Aligned_cols=215  Identities=24%  Similarity=0.348  Sum_probs=115.6

Q ss_pred             CCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCc
Q 038407           13 HQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLK   92 (528)
Q Consensus        13 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~   92 (528)
                      .+.+|++|++++++++ .+..  +..+++|++|++++|++++..  .+.++++|++|++++|++. .++. +.. +++|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~g--l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~-l~~-l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LAN-LTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GTT-CTTCC
T ss_pred             HhCCCCEEECCCCCCC-Cccc--cccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc-ccc-ccccc
Confidence            4456666666666665 3432  356666666666666666543  2666666666666666665 3322 222 56666


Q ss_pred             eeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCC
Q 038407           93 YFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN  172 (528)
Q Consensus        93 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  172 (528)
                      .|+++++.+++..  .......+.......+.+. .+.....  ....+........   .....+.............+
T Consensus       114 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~-~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         114 GLTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISALSG--LTSLQQLSFGNQV---TDLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGGGTT--CTTCSEEEEEESC---CCCGGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--ccccccccccccccccccc-ccccccc--ccccccccccccc---chhhhhcccccccccccccc
Confidence            6666666655332  2233445555555555544 2222111  1111111111111   01122333444444444444


Q ss_pred             cCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407          173 HFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       173 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      .... ...+..+++++.+++++|.+++..+  +...++|++|++++|.+++.  ..+..+++|+.+++++|++++.
T Consensus       186 ~~~~-~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         186 KVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             CCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccc-ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC
Confidence            4332 2345566777888888877765433  34567788888888877642  3566777888888887777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.2e-27  Score=234.45  Aligned_cols=356  Identities=23%  Similarity=0.299  Sum_probs=255.2

Q ss_pred             EccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCc
Q 038407           21 RLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNA  100 (528)
Q Consensus        21 ~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  100 (528)
                      .++.+++++.+..   ..+.+|++|+++++.++..  +.+..+++|++|++++|+++ .++. +.. +++|++|++++|+
T Consensus        28 ~l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~-L~~L~~L~L~~n~   99 (384)
T d2omza2          28 VLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQ   99 (384)
T ss_dssp             HTTCSSTTSEECH---HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSC
T ss_pred             HhCCCCCCCccCH---HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-ccC-Ccccccccccccc
Confidence            4555666655553   4567899999999988753  45778889999999999988 5553 444 7899999999998


Q ss_pred             CcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcc
Q 038407          101 FDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILES  180 (528)
Q Consensus       101 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  180 (528)
                      +.+..  .+.++++|+.|+++++.++ .++...  ....+.......+.+........................    ..
T Consensus       100 i~~i~--~l~~l~~L~~L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~  170 (384)
T d2omza2         100 IADIT--PLANLTNLTGLTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL----KP  170 (384)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC----GG
T ss_pred             ccccc--ccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccchh----hh
Confidence            87543  3788889999999888887 444332  456777787777776643322222222222222222111    23


Q ss_pred             cCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccc
Q 038407          181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKD  260 (528)
Q Consensus       181 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  260 (528)
                      +.............|...  ....+..+++++.+++++|.+++..+  +..+++|+.|++++|.++.+..  .......+
T Consensus       171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~--l~~l~~L~  244 (384)
T d2omza2         171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLT  244 (384)
T ss_dssp             GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred             hccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcch--hhcccccc
Confidence            444555666666666553  34567788999999999999987654  4567899999999999987632  22233448


Q ss_pred             eeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccce
Q 038407          261 QLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF  340 (528)
Q Consensus       261 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (528)
                      .+++++|.+++..+  +..+++|+.|++++|++++..+  +..                                     
T Consensus       245 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~-------------------------------------  283 (384)
T d2omza2         245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG-------------------------------------  283 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT-------------------------------------
T ss_pred             hhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--ccc-------------------------------------
Confidence            99999999987544  7889999999999998864221  111                                     


Q ss_pred             eeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCccc
Q 038407          341 KFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK  420 (528)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  420 (528)
                                     ++.++.+++++|.+.+  ...+..+++++.|++++|++++..  .+..+++|++|++++|++++ 
T Consensus       284 ---------------~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         284 ---------------LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             ---------------CTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-
T ss_pred             ---------------cccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-
Confidence                           3467888888888874  345788888999999999888653  37888899999999998874 


Q ss_pred             CccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCC
Q 038407          421 IPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGN  463 (528)
Q Consensus       421 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~N  463 (528)
                      ++ .+.++++|++|++++|++++..|  +.++++|+.+++++|
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            34 58888899999999999887655  567888888888887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=8.3e-28  Score=228.45  Aligned_cols=249  Identities=24%  Similarity=0.308  Sum_probs=191.8

Q ss_pred             CCCCEEEccCCcCcc--cCChhhhhcCCCCCEEEccC-CCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407           15 HDLEFVRLSHLNLNG--EFPNWLLENNTKLESNFLLN-NSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL   91 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~--~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L   91 (528)
                      .+++.|+|+++++.+  .+|..+ .++++|++|+|++ |.+++.+|..+.++++|++|++++|++.+..+..+.. +++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhh
Confidence            368888888888876  467764 7888888888886 7788888888888888888888888888555544444 7788


Q ss_pred             ceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCC-CCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407           92 KYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD-LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD  170 (528)
Q Consensus        92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  170 (528)
                      +.+++++|.+.+.+|..+.+++.++.+++++|.+.+.+|..+. .+.. ++.+++++|++++..+..+..+.. ..+++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~  205 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccc-ccccccccccccccccccccccccccccc-cccccc
Confidence            8888888888888888888888888888888888878887775 4444 488888888888777776666644 468888


Q ss_pred             CCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccc
Q 038407          171 GNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIY  249 (528)
Q Consensus       171 ~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (528)
                      ++......+ .+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..++.+++|++|+|++|+++|..
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            887765544 66778888888888888875544 5777888888888888888888888888888888888888888755


Q ss_pred             cchhhhccccceeeeccCcc
Q 038407          250 HHASILSLSKDQLVLAHNNF  269 (528)
Q Consensus       250 ~~~~~~~~~~~~L~L~~n~l  269 (528)
                      |. ......++.+++++|+.
T Consensus       285 P~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         285 PQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CC-STTGGGSCGGGTCSSSE
T ss_pred             CC-cccCCCCCHHHhCCCcc
Confidence            53 22222347778888864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.4e-26  Score=216.46  Aligned_cols=270  Identities=26%  Similarity=0.326  Sum_probs=193.2

Q ss_pred             CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEc
Q 038407          114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYL  192 (528)
Q Consensus       114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L  192 (528)
                      ..++++-++.+++ .+|..++   +++++|++++|+++...+..|.++++|++|++++|.+..+++ .|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3556666666666 6666542   456666776666665444456666666666666666666644 5666666666666


Q ss_pred             cCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCccccc
Q 038407          193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGE  272 (528)
Q Consensus       193 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~  272 (528)
                      ++|+++. +|..+  .+.++.|++.+|.+.+..+..+.....+..++...|....                      ...
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~  141 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGI  141 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGB
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cCC
Confidence            6666652 33322  2356666666666665544455555555555555554321                      123


Q ss_pred             CcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccc
Q 038407          273 VPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYR  352 (528)
Q Consensus       273 ~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (528)
                      .+..+..+++|+.+++++|.+.. +|..+                                                   
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~-l~~~~---------------------------------------------------  169 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITT-IPQGL---------------------------------------------------  169 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSC---------------------------------------------------
T ss_pred             CccccccccccCccccccCCccc-cCccc---------------------------------------------------
Confidence            34567888999999999998762 33221                                                   


Q ss_pred             ccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCC
Q 038407          353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLA  432 (528)
Q Consensus       353 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  432 (528)
                         +++|++|++++|......+..|..++.++.|++++|.+++..+..|.++++|++|+|++|+++ .+|.++..+++|+
T Consensus       170 ---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         170 ---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             ---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             ---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence               457999999999999888999999999999999999999988999999999999999999998 5688999999999


Q ss_pred             EEEccCCCCccCCCCCC------cccCCCCcCcccCCCCCCC
Q 038407          433 VFNVAHNNLSGKIPEWT------AQFATFNESSYEGNPFLCG  468 (528)
Q Consensus       433 ~L~ls~N~l~~~~p~~~------~~~~~l~~l~l~~Np~~c~  468 (528)
                      +|++++|+|+......+      ....+|+.++++||||.+.
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            99999999986544333      3467788999999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=215.83  Aligned_cols=229  Identities=20%  Similarity=0.225  Sum_probs=169.0

Q ss_pred             EEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccc
Q 038407          167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS  246 (528)
Q Consensus       167 L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  246 (528)
                      ++.++++++.+|..+.  +++++|+|++|+++...+.+|.+++.|++|++++|.+....+..+..+..++.+....+   
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~---   90 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN---   90 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC---
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc---
Confidence            4445555555554332  34566666666666444455666666666666666666555555555555555554322   


Q ss_pred             ccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccc
Q 038407          247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDE  326 (528)
Q Consensus       247 ~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (528)
                                          +.+....+..|.++++|+.|++++|.+....+..+..                       
T Consensus        91 --------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----------------------  127 (284)
T d1ozna_          91 --------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-----------------------  127 (284)
T ss_dssp             --------------------TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------
T ss_pred             --------------------cccccccchhhcccccCCEEecCCcccccccccccch-----------------------
Confidence                                2233344567888888999999988876443333322                       


Q ss_pred             ccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCC
Q 038407          327 GFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKH  406 (528)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  406 (528)
                                                   ..+|+.+++++|.++++.+..|..+++|+.|++++|++++..+.+|.++++
T Consensus       128 -----------------------------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         128 -----------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             -----------------------------hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc
Confidence                                         346889999999998777788888999999999999999888889999999


Q ss_pred             CCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          407 IKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       407 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      |+.+++++|+++++.|..|..+++|++|++++|++.+..|..+..+++|+.+++++|||.|+|++.
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            999999999999888999999999999999999999888888888899999999999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-26  Score=211.71  Aligned_cols=204  Identities=24%  Similarity=0.248  Sum_probs=151.4

Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeee
Q 038407          185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVL  264 (528)
Q Consensus       185 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L  264 (528)
                      ..+.+++.+++.++ .+|..+.  +.+++|+|++|++++..+..|.++++|++|++++|+++.+.               
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~---------------   71 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---------------   71 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---------------
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc---------------
Confidence            34445555555555 3444332  35666666666666555556666777777777776665331               


Q ss_pred             ccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeee
Q 038407          265 AHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT  344 (528)
Q Consensus       265 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (528)
                                 .+..+++|++|++++|++++. +..+..                                         
T Consensus        72 -----------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-----------------------------------------   98 (266)
T d1p9ag_          72 -----------VDGTLPVLGTLDLSHNQLQSL-PLLGQT-----------------------------------------   98 (266)
T ss_dssp             -----------CCSCCTTCCEEECCSSCCSSC-CCCTTT-----------------------------------------
T ss_pred             -----------ccccccccccccccccccccc-cccccc-----------------------------------------
Confidence                       234566777777777777532 322222                                         


Q ss_pred             ccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407          345 KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ  424 (528)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  424 (528)
                                 +++|+.|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus        99 -----------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_          99 -----------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             -----------ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence                       346888888888887777777888899999999999999888888889999999999999999888888


Q ss_pred             cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407          425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL  471 (528)
Q Consensus       425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l  471 (528)
                      |..+++|++|+|++|+++ .+|+.+..+.+|+.++++||||.|+|.+
T Consensus       168 ~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            999999999999999998 6787777899999999999999999865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=9.6e-25  Score=206.32  Aligned_cols=244  Identities=22%  Similarity=0.206  Sum_probs=166.8

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      ..+.++-++.+++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4566666666666 677654   256778888888777666667777788888888888777 45444444477788888


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccCCc
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDGNH  173 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  173 (528)
                      +++|+++.. |..  ....++.|++.+|.+. .++...+.....+..++...|....  .....+..+++|+.+++++|.
T Consensus        86 l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLKEL-PEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCSBC-CSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccCcC-ccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            888877743 332  2356777777777777 6666666666777777777664332  233445567777777777777


Q ss_pred             CCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407          174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS  253 (528)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (528)
                      +..++..+  +++|+.|++++|......+..+..++.++.|++++|.+++..+..+.++++|++|++++|+++.      
T Consensus       162 l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~------  233 (305)
T d1xkua_         162 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK------  233 (305)
T ss_dssp             CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS------
T ss_pred             ccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc------
Confidence            77665432  4677777777777776666777777777777777777776666677777777777777776653      


Q ss_pred             hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCc
Q 038407          254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG  295 (528)
Q Consensus       254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  295 (528)
                                         +|.++..+++|+.|++++|+++.
T Consensus       234 -------------------lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         234 -------------------VPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             -------------------CCTTTTTCSSCCEEECCSSCCCC
T ss_pred             -------------------cccccccccCCCEEECCCCccCc
Confidence                               34457778888888888887763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.5e-25  Score=204.66  Aligned_cols=255  Identities=22%  Similarity=0.240  Sum_probs=210.7

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      ..++.++++++ .+|..+.   +.+++|+|++|+++...+.+|.++++|++|++++|++. .++...+..++.++.+...
T Consensus        14 ~~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence            35677777776 7887652   57899999999999888888999999999999999998 5666666667888888764


Q ss_pred             -CCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCc
Q 038407           98 -MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE  176 (528)
Q Consensus        98 -~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  176 (528)
                       .+.++...+..|.++++|++|++++|.+. .++...+....+|+.+++++|.++...+..+..+++|+.|++++|++..
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence             66777777889999999999999999997 6666666778999999999999998767778899999999999999998


Q ss_pred             cCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhh
Q 038407          177 ILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASIL  255 (528)
Q Consensus       177 ~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  255 (528)
                      +++ .|..+++|+.+++++|++.+..|..|..+++|++|++++|++.+..+..|..+++|++|++++|++....+.....
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~  247 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW  247 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHH
Confidence            876 7889999999999999999888999999999999999999999888889999999999999999988654432211


Q ss_pred             ccccceeeeccCcccccCcccccC
Q 038407          256 SLSKDQLVLAHNNFEGEVPIQLCQ  279 (528)
Q Consensus       256 ~~~~~~L~L~~n~l~~~~~~~l~~  279 (528)
                       ...+++....+.+....|..+.+
T Consensus       248 -~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         248 -AWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             -HHHHHCCSEECCCBEEESGGGTT
T ss_pred             -HHHHhCcCCCCceEeCCchHHcC
Confidence             11134444455555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.7e-23  Score=189.57  Aligned_cols=202  Identities=22%  Similarity=0.202  Sum_probs=159.2

Q ss_pred             CCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEE
Q 038407          160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN  239 (528)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  239 (528)
                      ....+.+++.+++.++.+|+.+.  +++++|+|++|.+++..+..|..+++|++|++++|+++.. + .+..+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            44556667777777777766543  5688888888888766667788888888888888888743 3 356788888888


Q ss_pred             cccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCC
Q 038407          240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESS  319 (528)
Q Consensus       240 L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~  319 (528)
                      +++|++...                         +..+..+++|+.|++++|.+.+..+..+..                
T Consensus        84 Ls~N~l~~~-------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------  122 (266)
T d1p9ag_          84 LSHNQLQSL-------------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------  122 (266)
T ss_dssp             CCSSCCSSC-------------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTT----------------
T ss_pred             ccccccccc-------------------------ccccccccccccccccccccceeecccccc----------------
Confidence            888887643                         234667888889999888876433333222                


Q ss_pred             CccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCc
Q 038407          320 ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS  399 (528)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  399 (528)
                                                          +.++++|++++|.+....+..+..+++++.+++++|++++..++
T Consensus       123 ------------------------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_         123 ------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             ------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ------------------------------------ccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence                                                44788999999999877778888899999999999999988888


Q ss_pred             cccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407          400 TFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG  443 (528)
Q Consensus       400 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  443 (528)
                      .|+.+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++..
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            8999999999999999998 678888889999999999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=6.1e-20  Score=176.69  Aligned_cols=304  Identities=30%  Similarity=0.409  Sum_probs=159.9

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407           16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN   95 (528)
Q Consensus        16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~   95 (528)
                      ++++|+|++++++ .+|+    ..++|++|++++|+++. +|..   ..+|+.|++++|+++ .++.    ..+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            5677777777765 5664    24567777777777663 3433   346677777777665 4432    123566777


Q ss_pred             ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407           96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR  175 (528)
Q Consensus        96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  175 (528)
                      +++|.+.. +| .++.+++|++|+++++.+. ..+.    ....+..+.+..+....  ...+..++.++.+.+.+|...
T Consensus       105 L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-cc-chhhhccceeecccccccc-cccc----ccccccchhhccccccc--cccccccccceeccccccccc
Confidence            77776653 33 2455666777777666665 3332    23445566655554432  334445556666666666555


Q ss_pred             ccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhh
Q 038407          176 EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASIL  255 (528)
Q Consensus       176 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  255 (528)
                      ..+...   ...+.+...++.+. ..+ .+..++.|+.+++++|.... .+   ....++..+.+.++.+...       
T Consensus       176 ~~~~~~---~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-------  239 (353)
T d1jl5a_         176 KLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-------  239 (353)
T ss_dssp             SCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-------
T ss_pred             cccccc---cccccccccccccc-ccc-cccccccccccccccccccc-cc---ccccccccccccccccccc-------
Confidence            443211   12234444443332 121 23344555555555554431 11   1223344444444433221       


Q ss_pred             ccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccc
Q 038407          256 SLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK  335 (528)
Q Consensus       256 ~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (528)
                                           ....+.+...++..+.+.+. +.                                    
T Consensus       240 ---------------------~~~~~~l~~~~~~~~~~~~l-~~------------------------------------  261 (353)
T d1jl5a_         240 ---------------------PELPQSLTFLDVSENIFSGL-SE------------------------------------  261 (353)
T ss_dssp             ---------------------CCCCTTCCEEECCSSCCSEE-SC------------------------------------
T ss_pred             ---------------------cccccccccccccccccccc-cc------------------------------------
Confidence                                 11123444445444433210 00                                    


Q ss_pred             cccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCC
Q 038407          336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN  415 (528)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  415 (528)
                                         ........++..+.+.+.    ...+++|++|+|++|+++ .+|.   .+++|+.|+|++|
T Consensus       262 -------------------l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N  314 (353)
T d1jl5a_         262 -------------------LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFN  314 (353)
T ss_dssp             -------------------CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             -------------------ccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCC
Confidence                               011344555666655432    233567888888888877 4453   3567888888888


Q ss_pred             cCcccCccccccCCCCCEEEccCCCCccCCCCC
Q 038407          416 KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEW  448 (528)
Q Consensus       416 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  448 (528)
                      +|+ .+|..   +++|++|++++|+++ .+|..
T Consensus       315 ~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         315 HLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             cCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            887 44532   456888888888876 45653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-22  Score=201.53  Aligned_cols=234  Identities=17%  Similarity=0.115  Sum_probs=146.4

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCccccChhhhhc---
Q 038407           15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDF---   87 (528)
Q Consensus        15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---   87 (528)
                      .+|++||++++++++.--..++..+++++.|+|++|.++..    +..++..+++|++|||++|.++..-...+...   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998644445578899999999999998753    34557789999999999999863222223322   


Q ss_pred             -CCCCceeeccCCcCccc----CCccccCCCCCCEEEccCCcccccCChhh----hhCCCCCCEEEccCCcCcccC----
Q 038407           88 -LPSLKYFNISMNAFDSS----IPTSFGNMNFLISLDLSNNQLTGEIPEHL----AMGCVDLEYLLLSNNSLEGHL----  154 (528)
Q Consensus        88 -l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~----  154 (528)
                       ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+    ................+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence             34799999999998753    34567788999999999998863211111    112223444444444332111    


Q ss_pred             CccCCCCCCCCEEEccCCcCCccC-----ccc-CCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeecc
Q 038407          155 FPRNFNLTNLRRLQLDGNHFREIL-----ESL-SKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGP  224 (528)
Q Consensus       155 ~~~~~~l~~L~~L~l~~n~~~~~~-----~~~-~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~  224 (528)
                      ...+.....++.++++++......     ..+ ........+++..+.+...    ....+...+.++.+++.+|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            111234567778888777654321     011 1223456677776655321    112334567788888888776421


Q ss_pred             -----CcccccCCCCCCEEEcccCccccc
Q 038407          225 -----IPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       225 -----~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                           ..........++.+++++|.+...
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  270 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAK  270 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccchhhccccccccccccccccccccccc
Confidence                 223344566788888888876544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=2.6e-17  Score=158.00  Aligned_cols=94  Identities=26%  Similarity=0.256  Sum_probs=67.6

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA  437 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  437 (528)
                      .+...++..+.+.+.. .   -.......++..+.+.+.    ...+++|++|+|++|+++ .+|.   .+++|+.|+++
T Consensus       245 ~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~  312 (353)
T d1jl5a_         245 SLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIAS  312 (353)
T ss_dssp             TCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             cccccccccccccccc-c---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECC
Confidence            4666676666554321 1   113456777888877743    345789999999999998 5664   36789999999


Q ss_pred             CCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407          438 HNNLSGKIPEWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      +|+++ .+|+.   +++|+.+++++|+...
T Consensus       313 ~N~L~-~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         313 FNHLA-EVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             SSCCS-CCCCC---CTTCCEEECCSSCCSS
T ss_pred             CCcCC-ccccc---cCCCCEEECcCCcCCC
Confidence            99998 56653   4689999999998654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=162.80  Aligned_cols=218  Identities=17%  Similarity=0.119  Sum_probs=161.1

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      ++++.++.+++ .+|..++   +++++|++++|.++...+.+|.++++|++|++++|.+...++...+..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            67888888887 7887653   5789999999999877777889999999999999988766776666668899998876


Q ss_pred             C-CcCcccCCccccCCCCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCccCCCCC-CCCEEEccCCcC
Q 038407           98 M-NAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT-NLRRLQLDGNHF  174 (528)
Q Consensus        98 ~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~  174 (528)
                      . |.+....+..|.++++|+++++++|.+. ..+. .....+..+..+..+++.+.......+.+++ .++.|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 6777778888999999999999999887 4443 2233445566666677777765555666554 688888888888


Q ss_pred             CccCcccCCCCCCCEE-EccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEc
Q 038407          175 REILESLSKCSSLEGL-YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI  240 (528)
Q Consensus       175 ~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  240 (528)
                      ..++.......+++++ ++++|.++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            8877755555665555 45667777555556788888888888888888555555666655555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.8e-18  Score=153.83  Aligned_cols=203  Identities=18%  Similarity=0.299  Sum_probs=140.4

Q ss_pred             EEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC
Q 038407           20 VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN   99 (528)
Q Consensus        20 L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n   99 (528)
                      ++++.+++++.+.   +..+.+|++|++.+|.++..  ..+..+++|++|++++|.++ .++. +.. +++++++++++|
T Consensus        24 ~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~-l~~-l~~l~~l~~~~n   95 (227)
T d1h6ua2          24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP-LKN-LTKITELELSGN   95 (227)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CCSCCEEECCSC
T ss_pred             HHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc-ccc-cccccccccccc
Confidence            4555566664433   35667778888888877653  35777788888888888777 3322 333 678888888887


Q ss_pred             cCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc
Q 038407          100 AFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE  179 (528)
Q Consensus       100 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  179 (528)
                      .++..  ..+.++++|+.++++++... .++.  +...+.++.+.++.+.+..  ...+...++|++|++++|.+.... 
T Consensus        96 ~~~~i--~~l~~l~~L~~l~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2          96 PLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             ccccc--cccccccccccccccccccc-ccch--hccccchhhhhchhhhhch--hhhhccccccccccccccccccch-
Confidence            77633  35677788888888877765 3332  2356778888888777764  334567778888888888776554 


Q ss_pred             ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEccc
Q 038407          180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD  242 (528)
Q Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  242 (528)
                      .+.++++|++|++++|++++. + .++.+++|++|++++|++++..  .+.++++|+.|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            367788888888888887643 3 3777888888888888887543  377888888888763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=2.8e-19  Score=155.76  Aligned_cols=182  Identities=21%  Similarity=0.264  Sum_probs=124.0

Q ss_pred             CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCC
Q 038407          212 QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN  291 (528)
Q Consensus       212 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n  291 (528)
                      ++++.++++++ .+|..+  .+++++|+|++|+|++.                       ..+..|.++++|+.|++++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~-----------------------~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRI-----------------------SSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSB-----------------------CCSCSGGGCTTCCEEECCSS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCccc-----------------------ccccccCCCceEeeeecccc
Confidence            34555555555 334333  14556666666665433                       22345677888888888888


Q ss_pred             cCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCcc
Q 038407          292 ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG  371 (528)
Q Consensus       292 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  371 (528)
                      .+....+..+..                                                    +++|++|++++|++..
T Consensus        65 ~i~~~~~~~~~~----------------------------------------------------~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          65 QLTGIEPNAFEG----------------------------------------------------ASHIQELQLGENKIKE   92 (192)
T ss_dssp             CCCCBCTTTTTT----------------------------------------------------CTTCCEEECCSCCCCE
T ss_pred             cccccccccccc----------------------------------------------------ccccceeeeccccccc
Confidence            887655555443                                                    3368888888888887


Q ss_pred             CCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcc
Q 038407          372 QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQ  451 (528)
Q Consensus       372 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  451 (528)
                      ..+.+|.++++|++|+|++|+|+++.+++|..+++|++|+|++|.+....+.. .....++.+.+..|.++...|..   
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---  168 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---  168 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh---
Confidence            77788888999999999999999888888889999999999999887433221 11234566677778887777764   


Q ss_pred             cCCCCcCcccCCCCCCCCCCCCCC
Q 038407          452 FATFNESSYEGNPFLCGLPLPKSC  475 (528)
Q Consensus       452 ~~~l~~l~l~~Np~~c~~~l~~~c  475 (528)
                      +..++.+++..|.+.|.++-...|
T Consensus       169 l~~~~l~~L~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         169 VRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             TTTSBGGGSCTTTCCCCCC---CC
T ss_pred             hcCCEeeecCHhhCcCCCCCCCCC
Confidence            455666788889888887765554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=5.1e-19  Score=154.06  Aligned_cols=116  Identities=28%  Similarity=0.380  Sum_probs=108.2

Q ss_pred             CcccEEECCCCcCcc-CCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407          357 SYLSELDLSYNKLIG-QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN  435 (528)
Q Consensus       357 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (528)
                      +++++|+|++|+|++ ..+..|.++++|+.|+|++|.+.+..+..|..+++|++|+|++|+|+++.+..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            479999999999976 4467789999999999999999999999999999999999999999998899999999999999


Q ss_pred             ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      |++|+|++..|..+..+++|+.+++++|||.|+|++.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~  145 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchH
Confidence            9999999999999999999999999999999998654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=5.5e-18  Score=151.86  Aligned_cols=191  Identities=22%  Similarity=0.275  Sum_probs=159.4

Q ss_pred             hhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCC
Q 038407           10 FFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP   89 (528)
Q Consensus        10 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~   89 (528)
                      .++.+++|++|++++|+++ .++.  ++++++|++|++++|.+++..+  +..+++++++++++|.++ .++ .+.. ++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~-l~  107 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQ  107 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CT
T ss_pred             CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccc-cc
Confidence            3466789999999999998 5654  6899999999999999987543  889999999999999988 564 3444 88


Q ss_pred             CCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEc
Q 038407           90 SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQL  169 (528)
Q Consensus        90 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  169 (528)
                      +|++++++++...+.  ..+...+.++.+.++.+.+. ....  +.++++|++|++++|.+..  ...+.++++|++|++
T Consensus       108 ~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         108 SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKA  180 (227)
T ss_dssp             TCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEEC
T ss_pred             ccccccccccccccc--chhccccchhhhhchhhhhc-hhhh--hcccccccccccccccccc--chhhcccccceeccc
Confidence            999999999987643  45677889999999999887 3332  3468899999999999875  345889999999999


Q ss_pred             cCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407          170 DGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE  218 (528)
Q Consensus       170 ~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  218 (528)
                      ++|++.+++ .+..+++|++|++++|++++. + .+.++++|+.|++++
T Consensus       181 s~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKISDIS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCCCG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             CCCccCCCh-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            999998875 478899999999999999854 3 388999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=156.97  Aligned_cols=200  Identities=19%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             CEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCccc-CCccccCCCCCCEEEcc
Q 038407           43 ESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLS  121 (528)
Q Consensus        43 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~  121 (528)
                      +.++.++..++ .+|..+.  +++++|++++|+++ .+|...+..+++|++|++++|.+... .+..|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45555555555 2333221  35666666666665 55555444466666666666665432 33456666666666654


Q ss_pred             C-CcccccCChhhhhCCCCCCEEEccCCcCcccCCc-cCCCCCCCCEEEccCCcCCccCc-ccCCCC-CCCEEEccCCcc
Q 038407          122 N-NQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFP-RNFNLTNLRRLQLDGNHFREILE-SLSKCS-SLEGLYLSDNNL  197 (528)
Q Consensus       122 ~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~-~L~~L~L~~n~l  197 (528)
                      . |.+. ..+...+.++++|+++++++|.+....+. .+..+..++.+...++.+..++. .+..++ .++.|++++|++
T Consensus        87 ~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            3 3444 44444445566666666666665532111 12233444444445555555443 333332 455566666666


Q ss_pred             CccCCccccCCCCCCee-ecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407          198 SGKIPRWLGNLSMLQHI-ILPENHFEGPIPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       198 ~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                      +...+..+ ...+++++ ++++|.++...+..|.++++|++|++++|+++.+
T Consensus       166 ~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         166 QEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             CEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             cccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            53333332 23333333 3455555544444455666666666666655543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.2e-17  Score=145.64  Aligned_cols=181  Identities=23%  Similarity=0.313  Sum_probs=132.3

Q ss_pred             EEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC
Q 038407           20 VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN   99 (528)
Q Consensus        20 L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n   99 (528)
                      .++..+.+.+.++.   ..+.+|++|++++|.++...  .+..+++|++|++++|+++ .++. +. .+++|++|++++|
T Consensus        29 ~~l~~~~~~~~~~~---~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n  100 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDEN  100 (210)
T ss_dssp             HHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSS
T ss_pred             HHhCcCccCCccCH---HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-cc-cCccccccccccc
Confidence            34555666655553   34567888888888877542  4677888888888888887 4442 33 3778888888888


Q ss_pred             cCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc
Q 038407          100 AFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE  179 (528)
Q Consensus       100 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  179 (528)
                      ++++. + .+.++++|+.|++++|.+. .++.  +.+++.++.+++++|.+++  ...+..+++|+++++++|++.+++ 
T Consensus       101 ~i~~l-~-~l~~l~~L~~L~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-  172 (210)
T d1h6ta2         101 KVKDL-S-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-  172 (210)
T ss_dssp             CCCCG-G-GGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-
T ss_pred             ccccc-c-ccccccccccccccccccc-cccc--ccccccccccccccccccc--cccccccccccccccccccccccc-
Confidence            88743 3 5777888888888888876 5543  2467888888888888875  445667888888888888888765 


Q ss_pred             ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407          180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE  218 (528)
Q Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  218 (528)
                      .+..+++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            37788888888888888874 44 578888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-20  Score=187.04  Aligned_cols=380  Identities=14%  Similarity=0.041  Sum_probs=214.6

Q ss_pred             CCCCEEEccCCCCcccc-CcCccCCCCCCEEEccCCcCccccChh---hhhcCCCCceeeccCCcCccc----CCcccc-
Q 038407           40 TKLESNFLLNNSLPGLF-LLPIHCHKSLMLLDVSNNNLQGHIPVK---IGDFLPSLKYFNISMNAFDSS----IPTSFG-  110 (528)
Q Consensus        40 ~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~~~l~~L~~L~L~~n~i~~~----~~~~~~-  110 (528)
                      ++|+.||++++++++.. ...+..+++++.|+|++|.++..-...   ....+++|++|+|++|.|+..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35788888888887642 233456788888888888876321111   123477888888888887532    112222 


Q ss_pred             CCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEccCCcCcccCCccC-----CCCCCCCEEEccCCcCCccC----
Q 038407          111 NMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLSNNSLEGHLFPRN-----FNLTNLRRLQLDGNHFREIL----  178 (528)
Q Consensus       111 ~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~----  178 (528)
                      ...+|++|++++|++++..-.   ..+..+++|++|++++|.+.......+     ...............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            234688888888887632111   122357788888888887764211111     12223344444444333221    


Q ss_pred             -cccCCCCCCCEEEccCCccCccC----Cccc-cCCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccCccccc
Q 038407          179 -ESLSKCSSLEGLYLSDNNLSGKI----PRWL-GNLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDNNISGI  248 (528)
Q Consensus       179 -~~~~~l~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~  248 (528)
                       ..+.....++.++++++......    ...+ ........+++.++.+...    ....+...+.++.+++++|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence             13344567788888877654211    1111 1223456777777765422    112344567888888888876432


Q ss_pred             ccc-----hhhhccccceeeeccCccccc----CcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCC
Q 038407          249 YHH-----ASILSLSKDQLVLAHNNFEGE----VPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESS  319 (528)
Q Consensus       249 ~~~-----~~~~~~~~~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~  319 (528)
                      ...     ........+.+++++|.+...    ....+...+.++.+++++|.+.+.....+..                
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~----------------  305 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE----------------  305 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH----------------
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc----------------
Confidence            111     111122347778888776533    2234456777888888887764211000000                


Q ss_pred             CccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCCh----hhhccccCCEEeCCCccccc
Q 038407          320 ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPP----QIGNLTRIQTLNLSYNNLTG  395 (528)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~  395 (528)
                                                     ........|+.+++++|.+......    .+...++|++|+|++|++++
T Consensus       306 -------------------------------~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~  354 (460)
T d1z7xw1         306 -------------------------------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  354 (460)
T ss_dssp             -------------------------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             -------------------------------cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccC
Confidence                                           0000123578888888887644322    33445678888888888764


Q ss_pred             c----CCccc-cCCCCCCeeeCcCCcCccc----CccccccCCCCCEEEccCCCCccCCCCCC----c-ccCCCCcCccc
Q 038407          396 S----IPSTF-SNLKHIKSLDLSYNKLDGK----IPLQLVELNTLAVFNVAHNNLSGKIPEWT----A-QFATFNESSYE  461 (528)
Q Consensus       396 ~----~~~~~-~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~----~-~~~~l~~l~l~  461 (528)
                      .    ++..+ ...+.|++|+|++|+++..    +...+..+++|++|+|++|+++......+    . +...|+.+++.
T Consensus       355 ~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~  434 (460)
T d1z7xw1         355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY  434 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECC
Confidence            2    22223 2456788888888888742    33455667888888888888764221111    1 22357777777


Q ss_pred             CCCCC
Q 038407          462 GNPFL  466 (528)
Q Consensus       462 ~Np~~  466 (528)
                      +|.+.
T Consensus       435 ~~~~~  439 (460)
T d1z7xw1         435 DIYWS  439 (460)
T ss_dssp             TCCCC
T ss_pred             CCCCC
Confidence            77654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.4e-17  Score=145.41  Aligned_cols=180  Identities=23%  Similarity=0.323  Sum_probs=138.4

Q ss_pred             EccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcc
Q 038407           46 FLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL  125 (528)
Q Consensus        46 ~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  125 (528)
                      .+..+.+++.+.  ...+.+|++|++++|.++ .++ .+. .+++|++|++++|++++..  .++.+++|++|++++|++
T Consensus        30 ~l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccC--HHHhcCccEEECcCCCCC-Cch-hHh-hCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            455555554433  234678899999999887 444 343 3889999999999988643  467889999999999998


Q ss_pred             cccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccc
Q 038407          126 TGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWL  205 (528)
Q Consensus       126 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  205 (528)
                      + .++.  +.++++|+.|++++|.+..  .+.+..+++++.+++++|.+.... .+..+++|+++++++|.+.+. + .+
T Consensus       103 ~-~l~~--l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i-~-~l  174 (210)
T d1h6ta2         103 K-DLSS--LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-V-PL  174 (210)
T ss_dssp             C-CGGG--GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-G-GG
T ss_pred             c-cccc--ccccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccccc-c-cc
Confidence            8 6663  3478899999999998774  456778889999999999887654 456788999999999988753 3 37


Q ss_pred             cCCCCCCeeecCCceeeccCcccccCCCCCCEEEccc
Q 038407          206 GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD  242 (528)
Q Consensus       206 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  242 (528)
                      .++++|++|++++|++++ ++ .+.++++|++|++++
T Consensus       175 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            888999999999999884 34 588899999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5e-17  Score=142.07  Aligned_cols=161  Identities=27%  Similarity=0.356  Sum_probs=78.3

Q ss_pred             CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407           63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY  142 (528)
Q Consensus        63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  142 (528)
                      +.++++|+++++.++ .+. .+.. +++|++|++++|++++..  .++++++|++|++++|.+. .++.  +.+++.|++
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~-l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEY-LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             hcCCCEEECCCCCCC-Ccc-cccc-CCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--ccccccccc
Confidence            344444444444444 221 1222 445555555555544322  1445555555555555544 3332  234555555


Q ss_pred             EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee
Q 038407          143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE  222 (528)
Q Consensus       143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  222 (528)
                      |++++|.+..  .+.+..+++|+.|++++|++..++ .+..+++|+.|++.+|.+++.  ..++++++|++|++++|+++
T Consensus       111 L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         111 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            5555555443  223445555555555555554432 345555566666666655532  23555666666666666655


Q ss_pred             ccCcccccCCCCCCEE
Q 038407          223 GPIPMEFCQLDSLQIL  238 (528)
Q Consensus       223 ~~~~~~l~~l~~L~~L  238 (528)
                      +. + .+.++++|++|
T Consensus       186 ~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 DI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CC-G-GGGGCTTCSEE
T ss_pred             CC-c-cccCCCCCCcC
Confidence            32 2 35555665554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.9e-17  Score=141.62  Aligned_cols=178  Identities=24%  Similarity=0.306  Sum_probs=132.6

Q ss_pred             EEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccC
Q 038407           19 FVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISM   98 (528)
Q Consensus        19 ~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~   98 (528)
                      ...++.+++++.+.   ...++++++|++++|.++..  +.+..+++|++|++++|+++ .++. +.. +++|++|++++
T Consensus        22 ~~~l~~~~~~~~~~---~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~l~~   93 (199)
T d2omxa2          22 KTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNN   93 (199)
T ss_dssp             HHHTTCSSTTSEEC---HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCS
T ss_pred             HHHhCCCCCCCccC---HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-ccC-Ccccccccccc
Confidence            34566666665444   24577888888888888753  35677888888888888887 4443 433 78888888888


Q ss_pred             CcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccC
Q 038407           99 NAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREIL  178 (528)
Q Consensus        99 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  178 (528)
                      |.+...  ..+.+++.|+.|+++++... .++.  +..+++|+.|++++|++..  .+.+..+++|++|++.+|+++.++
T Consensus        94 n~~~~~--~~l~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2          94 NQIADI--TPLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             SCCCCC--GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG
T ss_pred             cccccc--cccccccccccccccccccc-cccc--cchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc
Confidence            887643  24778888889998888876 4432  3468889999999888874  456778888999999999888765


Q ss_pred             cccCCCCCCCEEEccCCccCccCCccccCCCCCCee
Q 038407          179 ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI  214 (528)
Q Consensus       179 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  214 (528)
                       .+.++++|++|++++|++++ ++ .++.+++|++|
T Consensus       167 -~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 -PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             -cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence             47788999999999998874 33 57788888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=153.23  Aligned_cols=223  Identities=17%  Similarity=0.169  Sum_probs=161.3

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      +++|++++.+.......++.  ..+..+.++......... ......+|++||++++.++......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            47899988876554444443  345677777665543322 233456899999999988755445666678999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCC-cccccCChhhhhCCCCCCEEEccCCc-CcccCC-ccCC-CCCCCCEEEccCCc
Q 038407           98 MNAFDSSIPTSFGNMNFLISLDLSNN-QLTGEIPEHLAMGCVDLEYLLLSNNS-LEGHLF-PRNF-NLTNLRRLQLDGNH  173 (528)
Q Consensus        98 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~-~l~~L~~L~l~~n~  173 (528)
                      +|.+++..+..+..+++|++|+++++ .++...-..+..++++|++|++++|. +++... ..+. ..++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988777788889999999999996 45422222344578999999999863 442111 1122 35789999999763


Q ss_pred             --CCc--cCcccCCCCCCCEEEccCC-ccCccCCccccCCCCCCeeecCCc-eeeccCcccccCCCCCCEEEcccC
Q 038407          174 --FRE--ILESLSKCSSLEGLYLSDN-NLSGKIPRWLGNLSMLQHIILPEN-HFEGPIPMEFCQLDSLQILNISDN  243 (528)
Q Consensus       174 --~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~L~~n  243 (528)
                        ++.  +...+..+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              332  2223456899999999987 466666777888999999999995 677666677888999999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=147.87  Aligned_cols=180  Identities=18%  Similarity=0.119  Sum_probs=86.3

Q ss_pred             CCCCCEEEccCCCCccc-cCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC-cCccc-CCccccCCCCC
Q 038407           39 NTKLESNFLLNNSLPGL-FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN-AFDSS-IPTSFGNMNFL  115 (528)
Q Consensus        39 l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L  115 (528)
                      ..+|++|++++|.++.. +...+..+++|++|+++++.+++..+..+.+ +++|++|++++| .++.. ....+.++++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhc
Confidence            34555555555555432 2223445555555555555555443344433 455555555553 23211 11112345556


Q ss_pred             CEEEccCCc-ccc-cCChhhhhCCCCCCEEEccCCc--CcccCCc-cCCCCCCCCEEEccCCc-CCc-cCcccCCCCCCC
Q 038407          116 ISLDLSNNQ-LTG-EIPEHLAMGCVDLEYLLLSNNS--LEGHLFP-RNFNLTNLRRLQLDGNH-FRE-ILESLSKCSSLE  188 (528)
Q Consensus       116 ~~L~l~~n~-l~~-~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~-~~~~l~~L~~L~l~~n~-~~~-~~~~~~~l~~L~  188 (528)
                      ++|+++++. ++. .+...+....+.|+.|+++++.  ++..... ...++++|++|++++|. +++ ....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            666665542 221 1112222234556666665432  2221111 12245666666666543 332 122455666677


Q ss_pred             EEEccCC-ccCccCCccccCCCCCCeeecCCc
Q 038407          189 GLYLSDN-NLSGKIPRWLGNLSMLQHIILPEN  219 (528)
Q Consensus       189 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  219 (528)
                      +|++++| .+++.....++++++|++|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777664 454444445666677777777666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.4e-16  Score=128.41  Aligned_cols=130  Identities=15%  Similarity=0.113  Sum_probs=104.4

Q ss_pred             hhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCC
Q 038407           10 FFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP   89 (528)
Q Consensus        10 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~   89 (528)
                      .+.++.++++|+|++|+++ .++. ++..+++|++|+|++|.++..  +.+..+++|++|++++|+++ .++..++..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccc
Confidence            3568889999999999997 6664 457899999999999999865  45888999999999999998 67766666688


Q ss_pred             CCceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEc
Q 038407           90 SLKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLL  145 (528)
Q Consensus        90 ~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l  145 (528)
                      +|++|++++|++..... ..+..+++|++|++++|.++ ..|.   .++..+++|++||-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            99999999999875422 46788899999999999887 6663   23456788888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=126.29  Aligned_cols=113  Identities=17%  Similarity=0.155  Sum_probs=98.9

Q ss_pred             cccEEECCCCcCccCCChhhhccccCCEEeCCCc-cccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407          358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN-NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV  436 (528)
Q Consensus       358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  436 (528)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567899998887 56788889999999999876 588777889999999999999999999988999999999999999


Q ss_pred             cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407          437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP  472 (528)
Q Consensus       437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~  472 (528)
                      ++|+++...+..+ ....++.+++++|||.|+|.+.
T Consensus        88 s~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3          88 SFNALESLSWKTV-QGLSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             CSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGGH
T ss_pred             cCCCCcccChhhh-ccccccccccCCCcccCCchHH
Confidence            9999996555555 5557999999999999998653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=8e-16  Score=146.89  Aligned_cols=242  Identities=17%  Similarity=0.139  Sum_probs=147.9

Q ss_pred             cCchhhhCCCCCCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCCccc----------cCcCccCCCCCCEEEcc
Q 038407            6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSLPGL----------FLLPIHCHKSLMLLDVS   72 (528)
Q Consensus         6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~----------~~~~~~~~~~L~~L~ls   72 (528)
                      .+..++.+...|++|+|++|.+.......+   +...++|+.++++++.....          +...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            456677888889999998888754322222   45678888888887654321          22335567888888888


Q ss_pred             CCcCccccChhh---hhcCCCCceeeccCCcCcccCCcc-------------ccCCCCCCEEEccCCcccccCChh---h
Q 038407           73 NNNLQGHIPVKI---GDFLPSLKYFNISMNAFDSSIPTS-------------FGNMNFLISLDLSNNQLTGEIPEH---L  133 (528)
Q Consensus        73 ~n~l~~~~~~~~---~~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~---~  133 (528)
                      +|.++......+   ....++|++|++++|.+.......             ....+.|+.+++++|.+.......   .
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            888764322222   123678888888888764211111             124567888888877765221111   1


Q ss_pred             hhCCCCCCEEEccCCcCccc-----CCccCCCCCCCCEEEccCCcCCcc-----CcccCCCCCCCEEEccCCccCccCCc
Q 038407          134 AMGCVDLEYLLLSNNSLEGH-----LFPRNFNLTNLRRLQLDGNHFREI-----LESLSKCSSLEGLYLSDNNLSGKIPR  203 (528)
Q Consensus       134 ~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~  203 (528)
                      ....+.|++|++++|.++..     ....+..+++|++|++++|.+...     ...+..+++|++|++++|.+.+....
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            23466788888888877642     223355677788888887776532     22456677788888888777643222


Q ss_pred             ----cccC--CCCCCeeecCCceeeccC----ccccc-CCCCCCEEEcccCcccc
Q 038407          204 ----WLGN--LSMLQHIILPENHFEGPI----PMEFC-QLDSLQILNISDNNISG  247 (528)
Q Consensus       204 ----~l~~--l~~L~~L~L~~n~i~~~~----~~~l~-~l~~L~~L~L~~n~l~~  247 (528)
                          .+..  .+.|++|++++|.|+...    ...+. .+++|++|++++|++..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence                2222  356777788777776432    22232 45677777777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-15  Score=123.33  Aligned_cols=113  Identities=24%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCC
Q 038407           60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD  139 (528)
Q Consensus        60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  139 (528)
                      +.+..++++|+|++|+++ .++. ++..+++|++|++++|+|+..  +.|..+++|++|++++|+++ .++..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            334556666666666666 4543 333356667777777666643  23566666777777777766 555555555666


Q ss_pred             CCEEEccCCcCcccC-CccCCCCCCCCEEEccCCcCCcc
Q 038407          140 LEYLLLSNNSLEGHL-FPRNFNLTNLRRLQLDGNHFREI  177 (528)
Q Consensus       140 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~  177 (528)
                      |++|++++|+++... ...+..+++|++|++++|.+...
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccc
Confidence            666666666665321 12344455555555555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=2.4e-15  Score=143.50  Aligned_cols=195  Identities=18%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             cCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCcc-------------cccCCCCCCEEEcccC
Q 038407          181 LSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPM-------------EFCQLDSLQILNISDN  243 (528)
Q Consensus       181 ~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~-------------~l~~l~~L~~L~L~~n  243 (528)
                      +..+++|+.|++++|.+...    +...+...++|++|++++|.+......             .....+.|+.+++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            44556677777776666532    122334456677777766665421111             1124566777777777


Q ss_pred             cccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC-CcCCccccccccCCCCCCCCcc
Q 038407          244 NISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC-LDNTTLHESYIDTSSPESSETS  322 (528)
Q Consensus       244 ~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~  322 (528)
                      .+......                    .+...+..++.|+.|++++|.+....... +.                    
T Consensus       169 ~i~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~--------------------  208 (344)
T d2ca6a1         169 RLENGSMK--------------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------  208 (344)
T ss_dssp             CCTGGGHH--------------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------
T ss_pred             cccccccc--------------------cccchhhhhhhhcccccccccccccccccchh--------------------
Confidence            65432111                    12234556677888888888765210000 00                    


Q ss_pred             ccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC----CChhhhccccCCEEeCCCccccccCC
Q 038407          323 FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ----IPPQIGNLTRIQTLNLSYNNLTGSIP  398 (528)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~  398 (528)
                                                  ......++|+.|++++|.++..    +...+..+++|++|+|++|.+++...
T Consensus       209 ----------------------------~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         209 ----------------------------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             ----------------------------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             ----------------------------hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence                                        0001145688888888887532    33456778888899999888875322


Q ss_pred             c----cccC--CCCCCeeeCcCCcCcccC----ccccc-cCCCCCEEEccCCCCcc
Q 038407          399 S----TFSN--LKHIKSLDLSYNKLDGKI----PLQLV-ELNTLAVFNVAHNNLSG  443 (528)
Q Consensus       399 ~----~~~~--l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~ls~N~l~~  443 (528)
                      .    .+..  .+.|++|++++|+|+...    ...+. +.+.|++|++++|++..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2    2222  367889999999886432    22332 56789999999998863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4.2e-14  Score=112.30  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=77.4

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407           18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS   97 (528)
Q Consensus        18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~   97 (528)
                      |+|+|++|+++ .++.  ++.+++|++|++++|.++. +|..+..+++|++|++++|.++ .++ .+.. +++|++|+++
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~-l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVAN-LPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccC-cccc-ccccCeEECC
Confidence            56788888776 5554  5677778888887777764 4556777777777777777777 454 2333 6777777777


Q ss_pred             CCcCcccCC-ccccCCCCCCEEEccCCcccc--cCChhhhhCCCCCCEE
Q 038407           98 MNAFDSSIP-TSFGNMNFLISLDLSNNQLTG--EIPEHLAMGCVDLEYL  143 (528)
Q Consensus        98 ~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L  143 (528)
                      +|+++.... ..+..+++|++|++++|+++.  ..+..+...+++|+.|
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            777764432 456677777777777777652  2233344445555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.2e-14  Score=113.00  Aligned_cols=103  Identities=20%  Similarity=0.294  Sum_probs=86.9

Q ss_pred             cEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCC
Q 038407          360 SELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN  439 (528)
Q Consensus       360 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  439 (528)
                      +.||+++|+++ .++ .+..+++|++|++++|+++ .+|..|+.+++|+.|++++|+|++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            47899999998 444 4889999999999999998 567789999999999999999985 44 5889999999999999


Q ss_pred             CCccCCC-CCCcccCCCCcCcccCCCCCC
Q 038407          440 NLSGKIP-EWTAQFATFNESSYEGNPFLC  467 (528)
Q Consensus       440 ~l~~~~p-~~~~~~~~l~~l~l~~Np~~c  467 (528)
                      +++.... ..+..+++|+.+++++||...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9986532 456778999999999998654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-12  Score=108.80  Aligned_cols=86  Identities=21%  Similarity=0.248  Sum_probs=74.8

Q ss_pred             cCcccEEECCCC-cCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEE
Q 038407          356 ISYLSELDLSYN-KLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF  434 (528)
Q Consensus       356 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  434 (528)
                      +++|++|++++| .++.+.+.+|.++++|+.|+|++|+|+.+.+.+|.++++|++|+|++|+|+.+.+..|..+ +|++|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence            347999999766 5887777889999999999999999998889999999999999999999996666566554 69999


Q ss_pred             EccCCCCc
Q 038407          435 NVAHNNLS  442 (528)
Q Consensus       435 ~ls~N~l~  442 (528)
                      +|++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            99999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=2.8e-14  Score=123.62  Aligned_cols=125  Identities=24%  Similarity=0.277  Sum_probs=79.4

Q ss_pred             CCEEEccCC--cCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEE
Q 038407           66 LMLLDVSNN--NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYL  143 (528)
Q Consensus        66 L~~L~ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  143 (528)
                      ++.+++++.  .+. .++..+.. +++|++|++++|.|+.. + .+..+++|++|++++|.++ .++... ..+++|++|
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L   98 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLST-LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEEL   98 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHH-TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEE
T ss_pred             cceeeeecccCchh-hhhhHHhc-ccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccc-ccccccccc
Confidence            444555443  233 44445554 67777788877777643 2 4677777888888777776 665433 234567777


Q ss_pred             EccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccC
Q 038407          144 LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLS  198 (528)
Q Consensus       144 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~  198 (528)
                      ++++|.++.  .+.+..+++|++|++++|++..++.  .+..+++|+.|++++|++.
T Consensus        99 ~l~~N~i~~--l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          99 WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECSEEECCC--HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc--cccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            777777764  2345566677777777777766543  4666777777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=5.3e-14  Score=121.87  Aligned_cols=128  Identities=23%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             CCCEEEccCC--cCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407           16 DLEFVRLSHL--NLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY   93 (528)
Q Consensus        16 ~L~~L~Ls~~--~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~   93 (528)
                      .++.+++++.  .+. .++.. +..+++|++|+|++|.++..  +.+.++++|++|++++|.++ .++..... +++|++
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~s-l~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDAT-LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHH-HHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCE
T ss_pred             ccceeeeecccCchh-hhhhH-HhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccccccc-cccccc
Confidence            3445555443  122 33334 46677777777777776643  24666777777777777766 55533222 456777


Q ss_pred             eeccCCcCcccCCccccCCCCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcc
Q 038407           94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEG  152 (528)
Q Consensus        94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~  152 (528)
                      |++++|+++..  ..+.++++|++|++++|+++ .++. ..+..+++|++|++++|++..
T Consensus        98 L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          98 LWISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccc--ccccccccccccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence            77777766643  23556666777777776665 4432 233456666666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.3e-09  Score=87.16  Aligned_cols=67  Identities=28%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             hhccccCCEEeCCCccccccC--CccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407          377 IGNLTRIQTLNLSYNNLTGSI--PSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG  443 (528)
Q Consensus       377 ~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  443 (528)
                      +..+++|++|+|++|+|+...  +..++.+++|+.|+|++|+|+...+-.+.....|+.|++++|++..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            344555555555555555322  2334455555555555555554333233333445555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.9e-08  Score=83.18  Aligned_cols=68  Identities=29%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             hhhcCCCCceeeccCCcCcccC--CccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc
Q 038407           84 IGDFLPSLKYFNISMNAFDSSI--PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG  152 (528)
Q Consensus        84 ~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  152 (528)
                      +...+++|++|++++|+|+...  +..+..+++|+.|++++|.++ .++...+.....|++|++++|.+..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            3334677777777777776442  244556777777777777776 5555433345566777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=1e-06  Score=72.84  Aligned_cols=93  Identities=18%  Similarity=0.129  Sum_probs=47.6

Q ss_pred             hhhhCCCCCCEEEccCC-cCcccCChh---hhhcCCCCCEEEccCCCCccccC----cCccCCCCCCEEEccCCcCcccc
Q 038407            9 NFFYHQHDLEFVRLSHL-NLNGEFPNW---LLENNTKLESNFLLNNSLPGLFL----LPIHCHKSLMLLDVSNNNLQGHI   80 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~-~~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~ls~n~l~~~~   80 (528)
                      ....+.++|++|+|+++ .+....-..   .+...+.|++|+|++|.+.....    ..+...+.|++|++++|.++...
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            33455677888888764 344321111   13455667777777776654322    22334566666666666665322


Q ss_pred             Chhhhhc---CCCCceeeccCCcC
Q 038407           81 PVKIGDF---LPSLKYFNISMNAF  101 (528)
Q Consensus        81 ~~~~~~~---l~~L~~L~L~~n~i  101 (528)
                      ...++..   .++|++|++++|.+
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHHHHhCCcCCEEECCCCcC
Confidence            2222221   23455555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=3.2e-05  Score=63.46  Aligned_cols=113  Identities=14%  Similarity=0.119  Sum_probs=69.0

Q ss_pred             hhhcCCCCCEEEccCC-CCccc----cCcCccCCCCCCEEEccCCcCccccChhhh---hcCCCCceeeccCCcCccc--
Q 038407           35 LLENNTKLESNFLLNN-SLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIG---DFLPSLKYFNISMNAFDSS--  104 (528)
Q Consensus        35 ~~~~l~~L~~L~L~~n-~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~l~~L~~L~L~~n~i~~~--  104 (528)
                      +..+.+.|++|+|+++ .+...    +..++...+.|++|++++|.+.......+.   ...+.|++|++++|.++..  
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            3456788999999874 45432    334566778899999999887633222222   2256788888888887642  


Q ss_pred             --CCccccCCCCCCEEEccCCcccccCChh-------hhhCCCCCCEEEccCC
Q 038407          105 --IPTSFGNMNFLISLDLSNNQLTGEIPEH-------LAMGCVDLEYLLLSNN  148 (528)
Q Consensus       105 --~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n  148 (528)
                        +...+...+.|++|++++|.+. .+...       .....+.|+.|+++.+
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              2234555677888888777654 22211       1123456666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=1.6e-05  Score=65.28  Aligned_cols=69  Identities=19%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             hhhhCCCCCCEEEccCC-cCcccCChhh---hhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCc
Q 038407            9 NFFYHQHDLEFVRLSHL-NLNGEFPNWL---LENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQ   77 (528)
Q Consensus         9 ~~l~~~~~L~~L~Ls~~-~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~   77 (528)
                      ....+.++|++|+|+++ .++...-..+   +...++|++|++++|.++..    +...+...+.++.+++++|.+.
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            33456677777777763 4543221111   34556666666666665443    1223344556666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=0.0001  Score=60.31  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             hhhcCCCCCEEEccC-CCCccc----cCcCccCCCCCCEEEccCCcCccccChhhh---hcCCCCceeeccCCcCccc--
Q 038407           35 LLENNTKLESNFLLN-NSLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIG---DFLPSLKYFNISMNAFDSS--  104 (528)
Q Consensus        35 ~~~~l~~L~~L~L~~-n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~l~~L~~L~L~~n~i~~~--  104 (528)
                      +..+.+.|++|+|++ +.++..    +..++...++|++|++++|.++......+.   ...++++.+++++|.+...  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            346778999999987 456432    334556778899999999987743322222   2256788888888877532  


Q ss_pred             --CCccccCCCCCCEEEcc--CCccccc----CChhhhhCCCCCCEEEccCC
Q 038407          105 --IPTSFGNMNFLISLDLS--NNQLTGE----IPEHLAMGCVDLEYLLLSNN  148 (528)
Q Consensus       105 --~~~~~~~l~~L~~L~l~--~n~l~~~----~~~~~~~~l~~L~~L~l~~n  148 (528)
                        +...+...+.|+.++++  +|.+...    +...+ ...+.|++|+++.+
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L-~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHH-HhCCCcCEEeCcCC
Confidence              22445566677765554  3444321    11112 24556666666544